[ { "uniprot_canonical_ac": "A0A8W4FLK4-1", "uniprot_ac": "A0A8W4FLK4", "uniprot_id": "A0A8W4FLK4_PIG", "mass": { "chemical_mass": 67052.0, "monoisotopic_mass": 67052.0 }, "refseq": { "ac": "XP_020947327", "name": "putative fidgetin-like protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947327" }, "gene_names": [ { "name": "FIGNL2", "type": "recommended", "evidence": [ { "id": "A0A8W4FLK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ] }, { "name": "FIGNL2", "type": "synonym", "evidence": [ { "id": "XP_020947327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947327" } ] } ], "protein_names": [ { "name": "Fidgetin-like protein 2", "type": "recommended", "evidence": [ { "id": "A0A8W4FLK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4/entry#names_and_taxonomy" } ] }, { "name": "putative fidgetin-like protein 2", "type": "synonym", "evidence": [ { "id": "XP_020947327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947327" } ] } ], "function": [ { "annotation": "Microtubule-severing enzyme that negatively regulates cell migration and wound healing. In migrating cells, targets dynamic microtubules (MTs) at the leading edge and severs them, thereby suppressing motility. Microtubule severing releases ARHGEF2 which activates RHOA, which in turn regulates focal ahesion turnover via focal adhesion kinase, as opposed to F-actin polymerization, to suppress cell motility. Negative regulator of axon regeneration that suppresses axonal growth by selectively severing dynamic MTs in the distal axon shaft and growth cone. Contributes to proper cell branching during endothelial and neuronal development.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4#function" }, { "database": "UniProtKB", "id": "ARBA00058070", "url": "https://www.uniprot.org/uniprotkb/ARBA00058070#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FIGNL2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4", "locus": { "chromosome": "5", "start_pos": 17180773, "end_pos": 17182743, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062762", "url": "https://www.ensembl.org/id/ENSSSCG00000062762" } ] } } ], "crossref": [ { "id": "A0A8W4FLK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FLK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100522548", "url": "https://www.ncbi.nlm.nih.gov/gene/100522548", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522548", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522548", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FLK4", "url": "https://www.orthodb.org/?gene=A0A8W4FLK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23074", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23074", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23074:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23074:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947327", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947327", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHWTPEHAQPLNQWPEQHLDVSSTTPSPAHKLELPPGGRQRCHYAWAHDDISALTASNLLKRYAEKYSGVLDSPYERPTLGGYGDAAFLNGAKGDPEPWPGPETPYPLASLHEGLPGTKSGSGGGSGGLGGSPVLAGNLPESLYASNTCGGPSSAPEYAAGYGGGYLAPGYCAQTGAALPPPPPAALLQPPPPPGYGPSGPLYNYPAGGYAAQPGYGALPPPPAPPPAPYLTSGLAAPTPLPASAPPRPAPASYGFQAAAEAGVSLKRKAADEGAEGRYRKYAYEPAKAPAADGASYPAADNGECRGNGFRAKQPGTAEEASGKYGGGVPLKVLGSPVYGPQLEPFEKFPERAPAPAPRGGFAVPSGEPPKGVDPGTLELVTSKMVDCGPPVQWADVAGQGALKAALEEELVWPLLRPPAYPGSPRPPRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPAVLLISELDALLPARDDGAAAAGALQAPLLACLDSGCGAGSDGVLVVGTTSRPAALDEATRRRFALRFYVTLPDGPARGQILQRVLAQQGCALSERELAALVQGTQGFSGGELGQLCQQAAAGAGLPGLQRPLSYKDLEAALAKVGPRASPKDLDSFVEWDKMYGFGH", "length": 656, "header": "tr|A0A8W4FLK4-1|A0A8W4FLK4_PIG Isoform 1 of Fidgetin-like protein 2 OS=Sus scrofa OX=9823 GN=FIGNL2 PE=3 SV=1 CANONICAL=A0A8W4FLK4-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FLK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4/entry", "sequence": { "sequence": "MHWTPEHAQPLNQWPEQHLDVSSTTPSPAHKLELPPGGRQRCHYAWAHDDISALTASNLLKRYAEKYSGVLDSPYERPTLGGYGDAAFLNGAKGDPEPWPGPETPYPLASLHEGLPGTKSGSGGGSGGLGGSPVLAGNLPESLYASNTCGGPSSAPEYAAGYGGGYLAPGYCAQTGAALPPPPPAALLQPPPPPGYGPSGPLYNYPAGGYAAQPGYGALPPPPAPPPAPYLTSGLAAPTPLPASAPPRPAPASYGFQAAAEAGVSLKRKAADEGAEGRYRKYAYEPAKAPAADGASYPAADNGECRGNGFRAKQPGTAEEASGKYGGGVPLKVLGSPVYGPQLEPFEKFPERAPAPAPRGGFAVPSGEPPKGVDPGTLELVTSKMVDCGPPVQWADVAGQGALKAALEEELVWPLLRPPAYPGSPRPPRTVLLFGPRGAGKALLGRCLATQLGATLLRLRGATLAAPGAAEGARLLQAAFAAARCRPPAVLLISELDALLPARDDGAAAAGALQAPLLACLDSGCGAGSDGVLVVGTTSRPAALDEATRRRFALRFYVTLPDGPARGQILQRVLAQQGCALSERELAALVQGTQGFSGGELGQLCQQAAAGAGLPGLQRPLSYKDLEAALAKVGPRASPKDLDSFVEWDKMYGFGH", "length": 656, "header": "tr|A0A8W4FLK4-1|A0A8W4FLK4_PIG Isoform 1 of Fidgetin-like protein 2 OS=Sus scrofa OX=9823 GN=FIGNL2 PE=3 SV=1 CANONICAL=A0A8W4FLK4-1" }, "locus": { "chromosome": "5", "start_pos": 17182743, "end_pos": 17180776, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099585.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099585.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080351.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080351.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522548", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522548", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of wound healing, spreading of epidermal cells", "id": "GO:1903690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903690", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "microtubule severing", "id": "GO:0051013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051013", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "negative regulation of axon regeneration", "id": "GO:0048681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048681", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "microtubule severing ATPase activity", "id": "GO:0008568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008568", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" }, { "name": "cell leading edge", "id": "GO:0031252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031252", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLK4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8W4FLK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK4" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 427, "end_pos": 562, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FLL3-1", "uniprot_ac": "A0A8W4FLL3", "uniprot_id": "A0A8W4FLL3_PIG", "mass": { "chemical_mass": 41425.0, "monoisotopic_mass": 41425.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MAGE domain-containing protein", "type": "recommended", "evidence": [ { "id": "A0A8W4FLL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLL3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL3", "locus": {} } ], "crossref": [ { "id": "A0A8W4FLL3", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FLL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR002190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": 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{ "database": "Ensembl Peptide", "id": "ENSSSCP00000079207.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079207.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLM3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM3" } ], "reference": [ { 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"https://www.ebi.ac.uk/interpro/entry/IPR039744", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12010", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12010", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12010:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12010:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FLM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56, "header": "tr|A0A8W4FLM5-1|A0A8W4FLM5_PIG Isoform 1 of Small ribosomal subunit protein uS14 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A8W4FLM5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FLM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5/entry", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56, "header": "tr|A0A8W4FLM5-1|A0A8W4FLM5_PIG Isoform 1 of Small ribosomal subunit protein uS14 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A8W4FLM5-1" }, "locus": { "chromosome": "7", "start_pos": 55720155, "end_pos": 55719988, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093169.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093169.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080112.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080112.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus 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{ "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "A0A8W4FLM5", "url": "https://omabrowser.org/oma/group/A0A8W4FLM5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"MPRESSGIRVPLRRLKPLDCAGQEKLLERARKVYGQGVNWCFSLISHYRDGLGRGSFAGSFLDYFAADCSYPLRRAIQEGPLRVDFPKVNYADLEDSEDEAALGGRKILPDRMRAARDRANQKLVDFIVKRKGADPHLLDIVKGRKRSRWLASFLRSGRYVICVETYLEDDDQLDVVVRHLQDIYREIDRNVLALTRDDKVSFVLEVLLPEAIICSIAALDGLDYKQAEQKYLQGPPVRYREKELFDRKVLRELSKRSARRLRAK", "length": 265, "header": "tr|A0A8W4FM46-1|A0A8W4FM46_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A8W4FM46-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FM46-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM46/entry", "sequence": { "sequence": "MPRESSGIRVPLRRLKPLDCAGQEKLLERARKVYGQGVNWCFSLISHYRDGLGRGSFAGSFLDYFAADCSYPLRRAIQEGPLRVDFPKVNYADLEDSEDEAALGGRKILPDRMRAARDRANQKLVDFIVKRKGADPHLLDIVKGRKRSRWLASFLRSGRYVICVETYLEDDDQLDVVVRHLQDIYREIDRNVLALTRDDKVSFVLEVLLPEAIICSIAALDGLDYKQAEQKYLQGPPVRYREKELFDRKVLRELSKRSARRLRAK", "length": 265, "header": "tr|A0A8W4FM46-1|A0A8W4FM46_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A8W4FM46-1" }, "locus": { "chromosome": "X", "start_pos": 124111017, "end_pos": 124110223, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105827.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105827.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080414.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080414.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM46", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8W4FM46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM46" }, { "id": "PF20884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MUM1-like PWWP", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 41, "start_aa": "Glu", "end_aa": "Cys", 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"monoisotopic_mass": 49553.0 }, "refseq": {}, "gene_names": [ { "name": "YBX2", "type": "recommended", "evidence": [ { "id": "A0A8W4FM49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49" } ] } ], "protein_names": [ { "name": "Y-box binding protein 2", "type": "synonym", "evidence": [ { "id": "A0A8W4FM49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM49", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "YBX2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49", "locus": { "chromosome": "12", "start_pos": 52635385, "end_pos": 52641651, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017938", "url": "https://www.ensembl.org/id/ENSSSCG00000017938" } ] } } ], "crossref": [ { "id": "A0A8W4FM49", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FM49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017938", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017938", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519387", "url": "https://www.ncbi.nlm.nih.gov/gene/100519387", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519387", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519387", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR11544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FM49", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM49-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFU0", "url": "https://www.uniprot.org/uniprotkb/F1SFU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFU0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWAGDRHVAAPGRGPGVLTRRRAGASASARSPGGGAGVRARGGCSARIGLWPGGGACASRGCWLLLASVQGRLPACGRGSGREDRAGRRVREPGGGAGAVAAAAAEEEVAAGAGTGPGGMSEAEAAVVATAAPAATVPATAAGVVAVVVPVPAGEPQKAGGGAGGGGVGAASGPAAGTPSAPGPRTPGNPATAASGTSAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRYLRNPGRGVEWTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAPNRRRFRRFIPRPRPAAPPPMVAEAPSGGTEPGSEGERAEDSGQRPRRRRPPPFFYRRRFVRGPRPLNQQQPLEGTDGVEPKETAPLEGDQQQGDERVPPPRFRPRYRRPFRPRPPQQPTTEGGDGETKPSQGPTDGSRPEPQRPRNRPYFQRRRQQPPGPRQSAAPETSAPINSGDPSTTILE", "length": 480, "header": "tr|A0A8W4FM49-1|A0A8W4FM49_PIG Isoform 1 of Y-box binding protein 2 OS=Sus scrofa OX=9823 GN=YBX2 PE=1 SV=1 CANONICAL=A0A8W4FM49-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FM49-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM49/entry", "sequence": { "sequence": 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"mass": { "chemical_mass": 15091.0, "monoisotopic_mass": 15091.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Glycine cleavage system H protein, mitochondrial", "type": "recommended", "evidence": [ { "id": "A0A8W4FM77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77/entry#names_and_taxonomy" } ] }, { "name": "Lipoic acid-containing protein", "type": "synonym", "evidence": [ { "id": "A0A8W4FM77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The glycine cleavage system catalyzes the degradation of glycine. The H protein (GCSH) shuttles the methylamine group of glycine from the P protein (GLDC) to the T protein (GCST). Has a pivotal role in the lipoylation of enzymes involved in cellular energetics such as the mitochondrial dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (DLAT), and the mitochondrial dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (DLST).", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM77", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77#function" }, { "database": "UniProtKB", "id": "ARBA00046240", "url": "https://www.uniprot.org/uniprotkb/ARBA00046240#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM77", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77", "locus": {} } ], "crossref": [ { "id": "A0A8W4FM77", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FM77", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06848", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06848", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003016", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003016", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11715", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11715", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11715:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11715:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01597", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01597", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FM77", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM77-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVASLWAAVFNLRNVSEPAAPCLLQPSGLQGWGGAVRLLLTSPAVLSVRKFTDKHEWVTTENGIGTVGISNLAQEVLGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVNEIDEALAENPYLSTNLVMKMAG", "length": 142, "header": "tr|A0A8W4FM77-1|A0A8W4FM77_PIG Isoform 1 of Glycine cleavage system H protein, mitochondrial OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A8W4FM77-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FM77-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77/entry", "sequence": { "sequence": "MAVASLWAAVFNLRNVSEPAAPCLLQPSGLQGWGGAVRLLLTSPAVLSVRKFTDKHEWVTTENGIGTVGISNLAQEVLGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVNEIDEALAENPYLSTNLVMKMAG", "length": 142, "header": "tr|A0A8W4FM77-1|A0A8W4FM77_PIG Isoform 1 of Glycine cleavage system H protein, mitochondrial OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=A0A8W4FM77-1" }, "locus": { "chromosome": "13", "start_pos": 30081217, "end_pos": 30080230, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105102.1", "url": 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"https://www.uniprot.org/uniprotkb/A0A8W4FM77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM77", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77" } ], "pmid": "" }, { "name": "glycine cleavage complex", "id": "GO:0005960", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005960", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM77", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM77" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycine decarboxylation via glycine cleavage system", "id": "GO:0019464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019464", "evidence": [ { 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"MSCRSTVRSQSSGRRGFSASSARVPGVCRSGFSTVSVSRSRGSGGLSGVCGGAGFGSRSLYSLGGSKRISIAGGYGGGVGAGFGFGGGARSGFGFGAGSGGFGLGGGAGFVGGYGGSGFPVCPPGGIQEVTINQNLLTPLNLQIDPTIQRVRTEEREQIKTLNNKFASFIDKVRFLEQQNKVLDTKWTLLQEQGIKTVRQNLEPLFEQYINDLRRQLDSILGERGRLDSELRGMQDLVEDFKKKYEDEINKRTAAENEFVNLKKDVDTAYMNKVELQAKVDSLTDEINFLRAFYDAELAQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEDIAQRSRAEAESWYQSKYEELRVTAGRHGDDLRNTKQEISEINRMIQRLRSEIDHVKKQCASLQSAIADAEQRGEMALKDARNKLAELEDALQKAKQDMARLLKEYQELMNTKLALDVEIATYRKLLEGEECRMNGPACLVLILSLPSTAVVQSTVSSGYGGASGVGSGLGLGGGSGYSYSSGHGLGGGFSSGSGRAIGGGLSSSGGSSSTIKYTTTTSSSSSRKGYRH", "length": 563, "header": "tr|A0A8W4FM80-1|A0A8W4FM80_PIG Isoform 1 of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737483 PE=3 SV=1 CANONICAL=A0A8W4FM80-1" }, "isoforms": [ { "isoform_ac": "A0A287BA49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA49/entry", "sequence": { "sequence": 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"MLTGGQELTLIKCQRCFKDQLGAVMHVTHHRVACGPRVRGLPPSQRTDGREGPRFLALSVSACIMTTHSEPNVSPAAGPSLSPTPALRARLCLLCRVALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGTSIFLSVTSILQRGCSKFRLLGKIVWRSFLLICIGIVIVNPNYCLGPLSWEKARIPGVLQRLGVTYFVVAVLELLFAKPVPESCASERSCFSLLDVTSSWPQWLFVLVLEGVWLALTFFLPVPGCPTGYLGPGGIGDLGKYPNCTGGAAGYIDRLLLGDDHLYQHPSPAVLYHTKVAYDPEGILGTINSILMAYLGVQAGKILLYHKDRTKGILIRFAAWGCFLGLISVALTKASENEGFIPVNKNLWSTSYVTTLSSSAFLILLVLYPIVDVKGLWTGTPFFYPGMNSILVYVGHEVFANYFPFQWRLGDSQSHREHLVQNIVATALWVLIAYVLYRKNVFWKI", "length": 483, "header": "tr|A0A8W4FMK9-1|A0A8W4FMK9_PIG Isoform 1 of Heparan-alpha-glucosaminide N-acetyltransferase OS=Sus scrofa OX=9823 GN=LOC100154844 PE=4 SV=1 CANONICAL=A0A8W4FMK9-1" }, "locus": { "chromosome": "17", "start_pos": 8661614, "end_pos": 8644923, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103575.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103575.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080587.1", "url": 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"ENSSSCP00000007464.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007464.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 84, "start_aa": "Thr", "end_pos": 84, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr84", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall 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"description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMK9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMK9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lysosomal transport", "id": "GO:0007041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007041", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMK9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMK9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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"length": 1356, "header": "tr|A0A8W4FN40-1|A0A8W4FN40_PIG Isoform 1 of Zinc finger protein 541 OS=Sus scrofa OX=9823 GN=ZNF541 PE=4 SV=1 CANONICAL=A0A8W4FN40-1" }, "locus": { "chromosome": "6", "start_pos": 53306736, "end_pos": 53280563, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102138.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102138.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080313.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080313.1" } ] } }, { "isoform_ac": "I3LLB8-1", "url": "https://www.uniprot.org/uniprotkb/I3LLB8/entry", "sequence": { "sequence": "MDQYGLGGEGALPSEMHLPSFSESPGLHCSDSLNRDLGPRTRDLLYAGLGSLDLDPSLPTPDVPSEALEDNLDTLSLYSGRDSDSMKLLEEYADPESQPSLQDLGLGVLKVPKEADEGGRAASGSARKGRRQHSSPQNPLLDCSLCGKVFSSASSLSKHYLTHSQERKHVCKICSKAFKRQDHLTGHMLTHQKTKPFVCIEQGCSKSYCDYRSLRRHYEVQHGLCILKEAPPEEEACGDSPHAHEVAGQPAPGGLRSLVPPEARSPGSLLPNRDLLRCIVSSIVHQKLPSPGPAPAGPPDSGEGRNTPCSCPPLSGSSSCAPGTLGPEVPEEPRPLRKEPAADLFTAVHARAAENNGPNPAESEPPLLQLPSSLEGWPEGSPLPSCLPLFRGQTVPAGAQPSGHSFQWLRNLPGCPQSKGNNMFVVHKPPSVPSSSREGSEPGPGLSSASPSGEPSPSLGAGLEDALPFPPSLLKAPGEASGDPRYASAEDDSWASKKSKFDCNSFSWQNPGEPGPQDVQKPGSLSSEATPLFRQLFLKSQEPLVGHEQMQVFQMITKSQRLFSHTQVPGPEGKQGALKALQGPWPLAPTVDSLHAGPVNPEPEGSPAHRRKSSPAFPREASPGSASRDAKGGPRAAAAPPALAASASDPPGNPDFSSLAKQLRAAKGTMDLGNVFAPGSQRQTPSGGDELPGAQLPGKQAQAEDGTASGATQGEKGPTCSRAGGYRLLSSNSRAQRLPGFRKEKARMDVCCAASPSQVAMASFSAGPPVDAPRDATSKLTIFNRIQGGNIYRLPQPMKEENMAGGCNQHSGGPTDWAEPMSTYICKNCSQMFYTEKGLSSHMCFHSNQWPSPRGKQEQQVCGTELCRPPRQVQRPEGDGQSPPGARKPLDSMTVAPLVGPVPGPVAAANRPPGSKGQEKDGEERDSKETSQPRKRKKRPQPSTFGEPGPGGGHQSCLRSPVFLVDRLLKGLFQCSPYTPPPMLSPIREGSGLYFSTLCSTSAQAGPDRLISTVLDHTDGSFGICVVKDDTKISIEPHINIGSRFQAEIPELQDRLLAGTDEHVASLVWKPWGDVMTNPETQDRVTELCNAACSSVMPGGGTNLELALHCLHEAQGDVQEALETLLLRGPQKSRTHPLADYRYTGSDTWTPMEKRLFKKAFCAHKKDFYLIHKTIQTKTVAQCVEYYYIWKKMIKFDCGRAPGLEKRVRREADEADRTETKVTCSPRERPGHRPTPELKIKTKSYRRESTLNASPNAGPKRMPEPPGSVEGQGVFPCRECERVFDKIKSRNAHMKRHRLQDHMEPLVRVKWPVKPFQLKEEEEEDEEMGTDIGPLPW", "length": 1337, "header": "tr|I3LLB8-1|A0A8W4FN40_PIG Computationally mapped isoform of Zinc finger protein 541 OS=Sus scrofa OX=9823 GN=ZNF541 PE=4 SV=4 CANONICAL=A0A8W4FN40-1" }, "locus": { "chromosome": "6", "start_pos": 53306736, "end_pos": 53280563, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027913.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027913.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024886.4", "url": "https://www.ensembl.org/id/ENSSSCP00000024886.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 60, "start_aa": "Thr", "end_pos": 60, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr60", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 815, "start_aa": "Thr", "end_pos": 815, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr815", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LLB8", "url": "https://www.uniprot.org/uniprotkb/I3LLB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "male meiotic nuclear division", "id": "GO:0007140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007140", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "meiotic cell cycle", "id": "GO:0051321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051321", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FN40" } ], "pmid": "" }, { "name": "histone deacetylase complex", "id": "GO:0000118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000118", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FN40", "url": 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"categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FWALRIA", "url": "https://omabrowser.org/oma/group/FWALRIA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FP18", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP18-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UNZ8", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UNZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQ40", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQ40-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQ40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYH5", "url": "https://www.uniprot.org/uniprotkb/F1RYH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYH5-1", "url": "https://www.uniprot.org/uniprotkb/F1RYH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGQQFTNKLQEEVICPICMDILQDPATIDCGHSFCLQCIMRSREGLDSVIKCPLCNKIVKRDTIRPNWLLVNLVEKIQAMDPSEEQPEVKELKCPKHGERFHYFCESDGKVLCVACCGSKDHKFHNTILLEEAAQSFQGQIQSQVEALLQKERAIVQMKLQGDQRITTLMAQVEQEKQKISTVFEQLLQALKEEKNFLLSRINWLDQELTKDRNSYLASAEAQLQSLRKLKDSLKARQLLPPREMLQDIKPVLSRSAGFRFLSPPPVSADLEKKLNETKLRHESLIESLKKFQDKCQADGKKDKSRFLKGLDKHYIKSWYLLEKSNPTPMETLEPESPSDDRNAKPLPPKLKLSPSLPNLFRSRSRASIASFVFYSNEDSSEDPGSPGAAWTEELKAALTPVTLDAASAHPDLIISQDLKTVTLDPVPQSRCAEPTDPARFHPFRCVLGLPGLSSGCQTWEAELEGPEGGGCLVGVASELVTRRGPLMIEPLTGFWVLRIVGFDCQALTEGGTREELSVRPRKVGIHVNHEGGEVVFYDSITSSRIYTFHTSFPGQVLPFFRLLFPGTQITLSP", "length": 575, "header": "tr|A0A8W4FP18-1|A0A8W4FP18_PIG Isoform 1 of Tripartite motif containing 31 OS=Sus scrofa OX=9823 GN=TRIM31 PE=1 SV=1 CANONICAL=A0A8W4FP18-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FP18-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18/entry", "sequence": { "sequence": "MAGQQFTNKLQEEVICPICMDILQDPATIDCGHSFCLQCIMRSREGLDSVIKCPLCNKIVKRDTIRPNWLLVNLVEKIQAMDPSEEQPEVKELKCPKHGERFHYFCESDGKVLCVACCGSKDHKFHNTILLEEAAQSFQGQIQSQVEALLQKERAIVQMKLQGDQRITTLMAQVEQEKQKISTVFEQLLQALKEEKNFLLSRINWLDQELTKDRNSYLASAEAQLQSLRKLKDSLKARQLLPPREMLQDIKPVLSRSAGFRFLSPPPVSADLEKKLNETKLRHESLIESLKKFQDKCQADGKKDKSRFLKGLDKHYIKSWYLLEKSNPTPMETLEPESPSDDRNAKPLPPKLKLSPSLPNLFRSRSRASIASFVFYSNEDSSEDPGSPGAAWTEELKAALTPVTLDAASAHPDLIISQDLKTVTLDPVPQSRCAEPTDPARFHPFRCVLGLPGLSSGCQTWEAELEGPEGGGCLVGVASELVTRRGPLMIEPLTGFWVLRIVGFDCQALTEGGTREELSVRPRKVGIHVNHEGGEVVFYDSITSSRIYTFHTSFPGQVLPFFRLLFPGTQITLSP", "length": 575, "header": "tr|A0A8W4FP18-1|A0A8W4FP18_PIG Isoform 1 of Tripartite motif containing 31 OS=Sus scrofa OX=9823 GN=TRIM31 PE=1 SV=1 CANONICAL=A0A8W4FP18-1" }, "locus": { "chromosome": "7", "start_pos": 22681033, "end_pos": 22668430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098580.2", "url": "https://www.ensembl.org/id/ENSSSCT00000098580.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080050.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080050.1" } ] } }, { "isoform_ac": "A0ABB5UNZ8-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNZ8/entry", "sequence": { "sequence": "MAGQQFTNKLQEEVICPICMDILQDPATIDCGHSFCLQCIMRSREGLDSVIKCPLCNKIVKRDTIRPNWLLVNLVEKIQAMDPSEEQPEVKELKCPKHGERFHYFCESDGKVLCVACCGSKDHKFHNTILLEEAAQSFQGQIQSQVEALLQKERAIVQMKLQGDQRITTLMAQVEQEKQKISTVFEQLLQALKEEKNFLLSRINWLDQELTKDRNSYLASAEAQLQSLRKLKDSLKARQLLPPREMLQDIKPVLSRSAGFRFLSPPPVSADLEKKLNETKLRHESLIESLKKFQDKCQADGKKDKSRFLKGLDKHYIKSWYLLEKSNPTPMETLEPESPSDDRNAKPLPPKLKLSPSLPNLFRSRSRASIASFVFYSNEDSSEDPGSPGAAWTEELKAALSEWLRAIKSP", "length": 410, "header": "tr|A0ABB5UNZ8-1|A0ABB5UNZ8_PIG Computationally mapped isoform of Tripartite motif containing 31 OS=Sus scrofa OX=9823 GN=TRIM31 PE=1 SV=1 CANONICAL=A0A8W4FP18-1" }, "locus": { "chromosome": "7", "start_pos": 22681033, "end_pos": 22670015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107304.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107304.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081697.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081697.1" } ] } }, { "isoform_ac": "A0ABB5UQ40-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQ40/entry", "sequence": { "sequence": "MAGQQFTNKLQEEVICPICMDILQDPATIDCGHSFCLQCIMRSREGLDSVIKCPLCNKIVKRDTIRPNWLLVNLVEKIQAMDPSEEQPEVKELKCPKHGERFHYFCESDGKVLCVACCGSKDHKFHNTILLEEAAQSFQGQIQSQVEALLQKERAIVQMKLQGDQRITTLMAQVEQEKQKISTVFEQLLQALKEEKNFLLSRINWLDQELTKDRNSYLASAEAQLQSLRKLKDSLKARQLLPPREMLQDIKPVLSRSAGFRFLSPPPVSADLEKKLNETKLRHESLIESLKKFQDKCQADGKKDKSRFLKGLDKHYIKSWYLLEKSNPTPMETLEPESPSDDRNAKPLPPKLKLSPSLPNLFRSRSRASIASFVFYSNEDSSEDPGSPGAAWTEELKAALRSEDSDAGPCSSKSLC", "length": 416, "header": "tr|A0ABB5UQ40-1|A0ABB5UQ40_PIG Computationally mapped isoform of Tripartite motif containing 31 OS=Sus scrofa OX=9823 GN=TRIM31 PE=1 SV=1 CANONICAL=A0A8W4FP18-1" }, "locus": { "chromosome": "7", "start_pos": 22681033, "end_pos": 22668854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107306.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107306.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081699.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081699.1" } ] } }, { "isoform_ac": "F1RYH5-1", "url": "https://www.uniprot.org/uniprotkb/F1RYH5/entry", "sequence": { "sequence": "MAGQQFTNKLQEEVICPICMDILQDPATIDCGHSFCLQCIMRSREGLDSVIKCPLCNKIVKRDTIRPNWLLVNLVEKIQAMDPSEEQPEVKELKCPKHGERFHYFCESDGKVLCVACCGSKDHKFHNTILLEEAAQSFQAQVEQEKQKISTVFEQLLQALKEEKNFLLSRINWLDQELTKDRNSYLASAEAQLQSLRKLKDSLKARQLLPPREMLQDIKPVLSRSAGFRFLSPPPVSADLEKKLNETKLRHESLIESLKKFQDKCQADGKKDKSRFLKGLDKHYIKSWYLLEKSNPTPMETLEPESPSDDRNAKPLPPKLKLSPSLPNLFRSRSRASIASFVFYSNEDSSEDPGSPGAAWTEELKAALTPVTLDAASAHPDLIISQDLKTVTLDPVPQSRCAEPTDPARFHPFRCVLGLPGLSSGCQTWEAELEGPEGGGCLVGVASELVTRRGPLMIEPLTGFWVLRIVGFDCQALTEGGTREELSVRPRKVGIHVNHEGGEVVFYDSITSSRIYTFHTSFPGQVLPFFRLLFPGTQITLSP", "length": 543, "header": "tr|F1RYH5-1|F1RYH5_PIG Computationally mapped isoform of Tripartite motif containing 31 OS=Sus scrofa OX=9823 GN=TRIM31 PE=1 SV=5 CANONICAL=A0A8W4FP18-1" }, "locus": { "chromosome": "7", "start_pos": 22681033, "end_pos": 22668430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001357.6", "url": "https://www.ensembl.org/id/ENSSSCT00000001357.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001326.5", "url": "https://www.ensembl.org/id/ENSSSCP00000001326.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP18", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9U0Q1-1", "protein_name": "Tripartite motif containing 31", "gene_name": "TRIM31", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAHQQFTGKLQEEMICPICLDILQDPATIDCGHNFCLSCITQSGEAADSVLKCPLCNKIVKRDTITPNWLLVNLVEKIQAMDPSDMQPETEELRCLRHGEKCHYFCEVDGKFLCVVCRESKDHKTHNTTLIEEAAQNYQGRIQSQIEVLQQKEREIIQVMAQGEHCIKVSMYQVELEKEMVIEAFRQLRKVLKEEKSFLLSRINWLGQEISKGEKLYVTSTKSQLNYLRKLKDSLKSRQCLPPGQLLQDIKIALCRSEAFRFLNPTPVSMDLEKKLSDIKSRHDSLTKSLKKFKDILQADSKKDKSKFLSGLSEEDRKSWYLAEKNDPKTNKTSEPELSPPVDRTTKPVLQNPKLSISLSPLFRKRNRDSFVSYSSNRDSSENLGSPGATNIEELKTMIDPLTLDAASAHPDLIISQDLKTVTLKPVPQRVCAGDTDPERFYPFRCVLGLPGLCSGCQTWEAELQGPEGGGCVVGVASELVPRKGMLQIEPLSGFWALRIAGSECQALTETGTREDLSVCLRKVGVHVNHECGKVVFYDATTSNHLYTFHASFPGQIFPFFRLLVPGTQITLSP", "length": 574 }, "evidence": [ { "id": "A0A8W4FP18", "url": "https://omabrowser.org/oma/group/A0A8W4FP18/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZN56-1", "protein_name": "Tripartite motif-containing 31", "gene_name": "Trim31", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADPKMASQLQEDVTCPICLEILQDPVTIDCGHNFCLKCINQIGKTSENILCPLCKCSVSKNTFRPNKLLASLAEKIQTMDPADIQQEKEEARCQKHKKKLYYFCEQDGALLCVVCRDSKDHKFHDVTLIDEAVQNYKVQIESQAQDLGRKDKEIIEEKKRGEGAIWTFRAQVELEKLKVIEEFKHLRQRLDEEESFLLSRMDWLEKQGAKQLGQYVTVTEKQLNSLRTLTKSLKIRLQSSSIELLKDIKDTLSRNKEFQFLSPIPVPVDLEKKRSEAKARLESVLKSLTEFKDNLKAKGKKDKSEFVSSLNKEERESWSLLQKNNSMSPTPVPMTLDKDSADPDLTISHDGKKVTLYYIAGKASNKQAKPRPFYPFHCVRGSPGLSSGRRVWEAEIWEPSGGACIIGVATELAQGSQSQNIRMQNCIWALRISPTGCQPFTNCKTQEHLQVCLKKVGVYVNHDCGEVIFYDAITSKHIYTFQTSFNGRVFPLFGLQVTCSHITLTP", "length": 507 }, "evidence": [ { "id": "A0A8W4FP18", "url": "https://omabrowser.org/oma/group/A0A8W4FP18/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R0K2-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "Trim31", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGQPLACQLQEEVTCPICMEILQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKLLASLAEKIQSMDPADIQAEKEDSRCQRHKEKLHYFCEQDGAFLCVVCRDSKDHKSHNVTLIDEAAQNYKVQIESQAQDLGQKDKKIIEEKKQGEGAIWAFRAQVDLEKLKIHEEFKLLRQRLDEEESFLLSRLDWLEQQGAKQLRQYVTVTEKQLNSLRKLTKSLKIRLQSSSMELLKDIKDALSRGKEFQFLNPNPVPEDLEKKCSEAKARHESIIKTLTELKDDMNAEGKRDKSAFMNSLNKEEKESWSLLQKNNSVLPTSVPVTLDKSSADPDLTFSQDLKKVTLYIVAGKASNRQAKPRPFYPFHCVRGSPGLSSGRQVWEAEIRGPSGGACIVGVVTELARGAQSQTVSAQSYIWALRISPSGCQPFTNCKAQEYLQVCLKKVGVYVNHDCGEVVFYDAITSKHIYTFQTSFDGKVFPLFGLQVACSHITLSP", "length": 507 }, "evidence": [ { "id": "A0A8W4FP18", "url": "https://omabrowser.org/oma/group/A0A8W4FP18/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BZY9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM31", "gene_name": "TRIM31", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQLNDLKKLVDSLKTKQNMPPRQLLEDIKVVLCRSEEFQFLNPTPVPLELEKKLSEAKSRHDSITGSLKKFKDQLQADRKKDENRFFKSMNKNDMKSWGLLQKNNHKMNKTSEPGSSSAGGRTTSGPPNHHSSAPSHSLFRASSAGKVTFPVCLLASYDEISGQGASSQDTKTFDVALSEELHAALSEWLTAIRAWFCEVPSS", "length": 425 }, "evidence": [ { "id": "A0A8W4FP18", "url": "https://omabrowser.org/oma/group/A0A8W4FP18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP18", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP18", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP18", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP18", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8W4FP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 131, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8W4FP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP18" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 383, "end_pos": 575, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "A0A8W4FP18", "database": 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[], "site_annotation": [ { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FPJ3-1", "uniprot_ac": "A0A8W4FPJ3", "uniprot_id": "A0A8W4FPJ3_PIG", "mass": { "chemical_mass": 344779.0, "monoisotopic_mass": 344779.0 }, "refseq": {}, "gene_names": [ { "name": "CFAP54", "type": "recommended", "evidence": [ { "id": "A0A8W4FPJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3" } ] } ], "protein_names": [ { "name": "Cilia and flagella associated protein 54", "type": "synonym", "evidence": [ { "id": "A0A8W4FPJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPJ3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP54", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3", "locus": { "chromosome": "5", "start_pos": 86792450, "end_pos": 87102623, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033574", "url": "https://www.ensembl.org/id/ENSSSCG00000033574" } ] } } ], "crossref": [ { "id": "ENSSSCG00000033574", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033574", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33487", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33487", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33487:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33487:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14858", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14858", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A8T7", "url": "https://www.uniprot.org/uniprotkb/A0A287A8T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8T7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPJ3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 3038, "header": "tr|A0A8W4FPJ3-1|A0A8W4FPJ3_PIG Isoform 1 of Cilia and flagella associated protein 54 OS=Sus scrofa OX=9823 GN=CFAP54 PE=4 SV=1 CANONICAL=A0A8W4FPJ3-1" }, "isoforms": [ { "isoform_ac": "A0A287A8T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8T7/entry", "sequence": { "sequence": "MAAHGTCSFSPSNLSPTSVSPPGPPPTPPPTSTAISKSPLESKASSLSPVPHSTCHEDSLPLAVFYGPLDAKNPLLVSCEKEIQELLGFMKRKKALATTEEQKHEFHRRCATSLFNIWTKYAPRLPAAYYNEKLLKVGDSLCEMKFHALNGKNICSYQLVCDSDTNLQNRESVIHCLHILSSLRLIMQAALPQEHLCWIIFNGTIYIYTICRKLMIIGHSSKALEYLLWASMCMESSVPLLAVRYLTWRASLYTAVCQCYYDCHAGVHGEAFARRALAKIDELRQLELMSSSPSQEESRRCYREAAIKMAVMIFKRGVFESRRKNKSLFRPKIRVNLREAQTLQWPRTVTERLLDEMFDSTASRFLAVLEALSDSNRRTLQTGPVVTEEVEVRDVVSELFIAGRELLITSNTGAEGTLDFPKSSLLPLIIQRKNVISVDAAVKFIKLAFTYEEWSLFESSAGQLIDFLQRQDDPESKKAEKELLLLIAIEPLINVKRNKGLIFPLENFKEGQVYCKKIAFHDTCGKACGHSEDVFLLATTLYSCVCDSPQDAQPDKEIVVDTIMFLWQKCKLGLQRLNVARNDSAKLTQKISTNKVFVFVFLQMLLVIASLICDTYFKSKFSLFIHLHNYCCKLKLIFFMNL", "length": 642, "header": "tr|A0A287A8T7-1|A0A287A8T7_PIG Computationally mapped isoform of Cilia and flagella associated protein 54 OS=Sus scrofa OX=9823 GN=CFAP54 PE=4 SV=2 CANONICAL=A0A8W4FPJ3-1" }, "locus": { "chromosome": "5", "start_pos": 87102594, "end_pos": 87055238, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045047.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045047.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040348.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040348.2" } ] } }, { "isoform_ac": "A0A8W4FPJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ3/entry", "sequence": { "sequence": 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"MWSPGGSLLQTLPRLLQHATLPGHAELPPRWAQQLAASRDNSADSLPRGGGASAAAAAVAAAAASGALLGACLERHGQPAASELPAPGGALAGSPGSGSGGGVVVGVAEVRNWRCCCLGSTCWCRSLVLVCVLAALCFASLALVRRYLQHLLLWVETLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQSSEKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSIGLLPTQLLNSYLGTTLRTMEDVIAEQSVSGYFVFCLQIIISIGLMFYVVHRAQVELNAAIVACEMELKTSLVKGNQPDISGSSLYNKRTLTFSGGGINIV", "length": 384, "header": "tr|A0A287AL97-1|A0A287AL97_PIG Computationally mapped isoform of Transmembrane protein 64 OS=Sus scrofa OX=9823 GN=TMEM64 PE=4 SV=1 CANONICAL=A0A8W4FMV1-1" }, "locus": { "chromosome": "4", "start_pos": 46361356, "end_pos": 46340648, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052324.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052324.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044797.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044797.1" } ] } }, { "isoform_ac": "A0A8W4FMV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1/entry", "sequence": { "sequence": "MWSPGGSLLQTLPRLLQHATLPGHAELPPRWAQQLAASRDNSADSLPRGGGASAAAAAVAAAAASGALLGACLERHGQPAASELPAPGGALAGSPGSGSGGGVVVGVAEVRNWRCCCLGSTCWCRSLVLVCVLAALCFASLALVRRYLQHLLLWVETLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQSSEKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSIIISIGLMFYVVHRAQVELNAAIVACEMELKTSLVKGNQPDISGSSLYNKRTLTFSGGGINIV", "length": 332, "header": "tr|A0A8W4FMV1-1|A0A8W4FMV1_PIG Isoform 1 of Transmembrane protein 64 OS=Sus scrofa OX=9823 GN=TMEM64 PE=4 SV=1 CANONICAL=A0A8W4FMV1-1" }, "locus": { "chromosome": "4", "start_pos": 46361356, "end_pos": 46340648, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100834.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100834.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079640.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517583", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517583", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AB80-1", "protein_name": "Transmembrane protein 64", "gene_name": "Tmem64", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNPGGSLLHTLPRALQHAGRPGGAEQPGRWAPERTAGGDCSEDRLPRGGGASAAAAAAAASGALLGAYLERHGPPAASDLPAPAGALAGGPGSGGGVVVGVAEVRNWRCCCLGSTCWCRSLVLVCVLAALCFASLALVRRYLQHLLLWVESLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQSSDKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSVGLLPTQLLNSYLGTTLRTMEDVIAEQSVSGYFVFCLQIVISIGLMFYVVHRAQVELNAAIVACEMELKTSLVKGSQPNPSGSSFYNKRTLTFSGARSIRLRESHTTVHV", "length": 388 }, "evidence": [ { "id": "A0A8W4FMV1", "url": "https://omabrowser.org/oma/group/A0A8W4FMV1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1LU94-1", "protein_name": "Transmembrane protein 64", "gene_name": "tmem64", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MWSSGPVQGVLKALKHAAGKGHIQLSRWLQRTPDSLDCDKIDILICNVFDERANGGKTDADPAGLTEPASSFTPEFRHPCCITTCCFKSALLACVLTAVCFSSVALVRQYLKDVLLWVESLDSLVGAMLFIVGLITVSFPCGWGYIVLNVAAGYLYGFVLGMGLVMVGVLIGTFIAHVVCKRLLTNWVLSKIGSSEQLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSVSITDVSLPNYLVASSVGLLPTQLLNSYLGTTLRTMEDVIAEQSISGYFVFSLQIFISIGLMFYVVHRAQVELNAAIAACQMEMKTSYMNGSAANHGGSTYCSKRTAATGGGINVV", "length": 348 }, "evidence": [ { "id": "A0A8W4FMV1", "url": "https://omabrowser.org/oma/group/A0A8W4FMV1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3U145-1", "protein_name": "Transmembrane protein 64", "gene_name": "Tmem64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRNPGGSLPHTLPRALQHAGRTGVVEQPGRWAPERTAGGDRSEDRLPRGGGASAAAAAAAAAASGALLGAYLERHGLPAASDLPAPAGALAGGPGSGGGVVVGVAEVRNWRCCCLGSTCWCRSLVLVCVLAALCFASLALVRRYLQHLLLWVESLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQNSDKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSITDVPLPSYLMASSAGLLPTQLLNSYLGTTLRTMEDVIAEQSLSGYFVFCLQIVISIGLMFYVVHRAQVELNAAIVACEMELKTSLVKGNQSDPSGSSFYNKRTLTFSGGGINIV", "length": 381 }, "evidence": [ { "id": "A0A8W4FMV1", "url": "https://omabrowser.org/oma/group/A0A8W4FMV1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YI46-1", "protein_name": "Transmembrane protein 64", "gene_name": "TMEM64", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRSPGGILLQALPRLLQHAALPGLAELPARWALPRGAGGDGPADRLPRGGGASAAAAAAAASGALLGAYLERHGPPEASELPEPGGALAGGPGSGGGGVVVGVAEVRNWRCCCLGSTCWCRSLVLVCVLAALCFASLALVRRYLHHLLLWVESLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMMVGVLIGTFIAHVVCKRLLTAWVAARIQSSEKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSITDLSLPNYLMASSVGLLPTQLLNSYLGTTLRTMEDVIAEQSVSGYFVFCLQIIISIGLMFYVVHRAQVELNAAIVACEMELKSSLVKGNQPNTSGSSFYNKRTLTFSGGGINVV", "length": 380 }, "evidence": [ { "id": "A0A8W4FMV1", "url": "https://omabrowser.org/oma/group/A0A8W4FMV1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of fat cell differentiation", "id": "GO:0045600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045600", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" }, { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" }, { "name": "regulation of cytosolic calcium ion concentration", "id": "GO:0051480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051480", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" }, { "name": "positive regulation of bone resorption", "id": "GO:0045780", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045780", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" }, { "name": "negative regulation of osteoblast differentiation", "id": "GO:0045668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045668", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" }, { "name": "positive regulation of osteoclast differentiation", "id": "GO:0045672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045672", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8W4FMV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMV1" }, { "id": "PF09335", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09335" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VTT", "eco_id": "ECO_0000259", "start_pos": 184, "end_pos": 270, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FJS9-1", "uniprot_ac": "A0A8W4FJS9", "uniprot_id": "A0A8W4FJS9_PIG", "mass": { "chemical_mass": 8388.0, "monoisotopic_mass": 8388.0 }, "refseq": {}, "gene_names": [ { "name": "NDUFC2", "type": "recommended", "evidence": [ { "id": "A0A8W4FJS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJS9" } ] } ], "protein_names": [ { "name": "NADH:ubiquinone oxidoreductase subunit C2", "type": "synonym", "evidence": [ { "id": "A0A8W4FJS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJS9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AZV7", "url": "https://www.uniprot.org/uniprotkb/A0A287AZV7#function" }, { "database": "UniProtKB", "id": "PIRNR017834", "url": "https://www.uniprot.org/uniprotkb/PIRNR017834#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FJS9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJS9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFC2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJS9", "locus": { "chromosome": "9", "start_pos": 12485167, "end_pos": 12492591, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039494", "url": "https://www.ensembl.org/id/ENSSSCG00000039494" } ] } } ], "crossref": [ { "id": "A0A8W4FJS9", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FJS9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039494", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039494", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13099:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13099:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06374", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06374", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AZV7", "url": 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"tr|A0A5G2QLQ2-1|A0A8W4FPU7_PIG Computationally mapped isoform of ATP synthase mitochondrial F1 complex assembly factor 1 OS=Sus scrofa OX=9823 GN=ATPAF1 PE=1 SV=1 CANONICAL=A0A8W4FPU7-1" }, "locus": { "chromosome": "6", "start_pos": 164856064, "end_pos": 164830757, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089645.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089645.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065776.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065776.1" } ] } }, { "isoform_ac": "A0A5G2QUN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUN6/entry", "sequence": { "sequence": "MAAAVAATGGAGPAVLQVAGLYRGLCAVRSRALGLGLVSPAQLRVFPVRRGSGRPAGGADGSGVEAELEANPFYDRYRDKIQQLRRSDPVAFESRLEKRSEFRKQPVGHSKQGDFIKCVEEKTNTLGKQPKSRGFTKDKTLSSIFNIEMVKDKTAEEIKQIWQQYFAAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGEAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKETFGLVETFNFRPNELSYWTLYSQYPPRTPAQREDTSECGTNSS", "length": 326, "header": "tr|A0A5G2QUN6-1|A0A8W4FPU7_PIG Computationally mapped isoform of ATP synthase mitochondrial F1 complex assembly factor 1 OS=Sus scrofa OX=9823 GN=ATPAF1 PE=1 SV=1 CANONICAL=A0A8W4FPU7-1" }, "locus": { "chromosome": "6", "start_pos": 164861673, "end_pos": 164830832, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067857.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067857.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061881.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061881.1" } ] } }, { "isoform_ac": "A0A8W4FPU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPU7/entry", "sequence": { "sequence": "MAAAVAATGGAGPAVLQVAGLYRGLCAVRSRALGLGLVSPAQLRVFPVRRGSGRPAGGADGSGVEAELEANPFYDRYRDKIQQLRRSDPVAFESRLEKRSEFRKQPVGHSKQGDFIKCVEEKTNTLGKQPKSRGFTKDKTLSSIFNIEMVKDKTAEEIKQIWQQYFAAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGTELHFTALINIQTRGEAAASQLILYHYPELKEEKGIVLMTAEMDSTFLNVAEAQCIANQVQLFYATDRKETFGLVETFNFRPNEFKYMSVIADRSKCSHIGCGKNVAIK", "length": 322, "header": "tr|A0A8W4FPU7-1|A0A8W4FPU7_PIG Isoform 1 of ATP synthase mitochondrial F1 complex assembly factor 1 OS=Sus scrofa OX=9823 GN=ATPAF1 PE=1 SV=1 CANONICAL=A0A8W4FPU7-1" }, "locus": { "chromosome": "6", "start_pos": 164856881, "end_pos": 164830832, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101551.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101551.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080974.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080974.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": 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"RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B2H1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2H1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGT6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRSQVALLGLGLLLMLLLYVGLPGPSEQTSWLWGDPNITILAGLTPGDSPLFYREVLPLHQARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEASTEAGRAELLERVLRNLEVQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRHLPNHSVVKLRDAGHACYLHKPQDFHLVLLAFLDHLP", "length": 242, "header": "tr|A0A8W4FLI6-1|A0A8W4FLI6_PIG Isoform 1 of Protein ABHD14A OS=Sus scrofa OX=9823 GN=ABHD14A PE=3 SV=1 CANONICAL=A0A8W4FLI6-1" }, "isoforms": [ { "isoform_ac": "A0A287B2H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2H1/entry", "sequence": { "sequence": "MLVTRHQPREVTYRFVKEPRGHRPRTVVQSSMSRSQVALLGLGLLLMLLLYVGLPGPSEQTSWLWGDPNITILAGLTPGDSPLFYREVLPLHQARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEASTEAGRAELLERVLRNLEVQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRHLPNHSVVKLRDAGHACYLHKPQDFHLVLLAFLDHLP", "length": 273, "header": "tr|A0A287B2H1-1|A0A287B2H1_PIG Computationally mapped isoform of Protein ABHD14A OS=Sus scrofa OX=9823 GN=ABHD14A PE=3 SV=1 CANONICAL=A0A8W4FLI6-1" }, "locus": { "chromosome": "13", "start_pos": 34110932, "end_pos": 34105233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044844.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044844.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050444.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050444.1" } ] } }, { "isoform_ac": "A0A5G2RGT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT6/entry", "sequence": { "sequence": "MVAALFGCWLLLGGARPAVAGRVNPVGPTVVQSSMSRSQVALLGLGLLLMLLLYVGLPGPSEQTSWLWGDPNITILAGLTPGDSPLFYREVLPLHQARRPRLSSCMGSWTASWLRSHCSSSATCLTTLW", "length": 129, "header": "tr|A0A5G2RGT6-1|A0A8W4FLI6_PIG Computationally mapped isoform of Protein ABHD14A OS=Sus scrofa OX=9823 GN=ABHD14A PE=3 SV=2 CANONICAL=A0A8W4FLI6-1" }, "locus": { "chromosome": "13", "start_pos": 34110843, "end_pos": 34105729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086266.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086266.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070470.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070470.1" } ] } }, { "isoform_ac": "A0A8W4FLI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6/entry", "sequence": { "sequence": "MSRSQVALLGLGLLLMLLLYVGLPGPSEQTSWLWGDPNITILAGLTPGDSPLFYREVLPLHQARRVDVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDLPGFGNSAPSKEASTEAGRAELLERVLRNLEVQNAVLVSPSLSGRYALPFLMRGHHQLHGFVPIAPASTQNYTQEQFWAVKTPTLILYGELDRILAQESLQQLRHLPNHSVVKLRDAGHACYLHKPQDFHLVLLAFLDHLP", "length": 242, "header": "tr|A0A8W4FLI6-1|A0A8W4FLI6_PIG Isoform 1 of Protein ABHD14A OS=Sus scrofa OX=9823 GN=ABHD14A PE=3 SV=1 CANONICAL=A0A8W4FLI6-1" }, "locus": { "chromosome": "13", "start_pos": 34110932, "end_pos": 34108271, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096635.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096635.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079768.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079768.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RGT6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8W4FLI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLI6" }, { "id": "PF12697", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12697" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 167, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 38, "end_pos": 40 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FNV3-1", "uniprot_ac": "A0A8W4FNV3", "uniprot_id": "A0A8W4FNV3_PIG", "mass": { "chemical_mass": 27623.0, "monoisotopic_mass": 27623.0 }, "refseq": {}, "gene_names": [ { "name": "PSMA2", "type": "recommended", "evidence": [ { "id": "A0A8W4FNV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ] } ], "protein_names": [ { "name": "Proteasome subunit alpha type-2", "type": "recommended", "evidence": [ { "id": "A0A8W4FNV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex).", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZH5#function" }, { "database": "UniProtKB", "id": "ARBA00003876", "url": "https://www.uniprot.org/uniprotkb/ARBA00003876#function" }, { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3#function" }, { "database": "UniProtKB", "id": "A0A8W4FFE9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMA2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3", "locus": { "chromosome": "18", "start_pos": 51921238, "end_pos": 51909473, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039582", "url": "https://www.ensembl.org/id/ENSSSCG00000039582" } ] } } ], "crossref": [ { "id": "A0A8W4FNV3", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FNV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039582", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039582", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03750", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03750", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1UJP8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UJP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFE9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLL4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCGLSQRCSYNKYLRMCGFSVYLCFFLSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA", "length": 248, "header": "tr|A0A8W4FNV3-1|A0A8W4FNV3_PIG Isoform 1 of Proteasome subunit alpha type-2 OS=Sus scrofa OX=9823 GN=PSMA2 PE=1 SV=1 CANONICAL=A0A8W4FNV3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UJP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJP8/entry", "sequence": { "sequence": "MAERGYSFSLTTFRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA", "length": 164, "header": "tr|A0A4X1UJP8-1|A0A4X1UJP8_PIG Computationally mapped isoform of Proteasome 20S subunit alpha 2 OS=Sus scrofa OX=9823 GN=PSMA2 PE=1 SV=1 CANONICAL=A0A8W4FNV3-1" }, "locus": { "chromosome": "18", "start_pos": 51919687, "end_pos": 51909489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073996.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073996.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062401.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062401.1" } ] } }, { "isoform_ac": "A0A5G2QZH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZH5/entry", "sequence": { "sequence": "VRCSYNKYLRMCGFSVYLCFFLSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA", "length": 243, "header": "tr|A0A5G2QZH5-1|A0A8W4FNV3_PIG Computationally mapped isoform of Proteasome subunit alpha type-2 OS=Sus scrofa OX=9823 GN=PSMA2 PE=1 SV=1 CANONICAL=A0A8W4FNV3-1" }, "locus": { "chromosome": "18", "start_pos": 51919687, "end_pos": 51912835, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090039.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090039.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063640.1" } ] } }, { "isoform_ac": "A0A8W4FFE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFE9/entry", "sequence": { "sequence": "VCSYNKYLRMCGFSVYLCFFLSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA", "length": 242, "header": "tr|A0A8W4FFE9-1|A0A8W4FNV3_PIG Computationally mapped isoform of Proteasome subunit alpha type-2 OS=Sus scrofa OX=9823 GN=PSMA2 PE=1 SV=1 CANONICAL=A0A8W4FNV3-1" }, "locus": { "chromosome": "18", "start_pos": 51919687, "end_pos": 51912961, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104743.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104743.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078154.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078154.1" } ] } }, { "isoform_ac": "A0A8W4FLL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLL4/entry", "sequence": { "sequence": "LISEGYSLKSCLVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA", "length": 162, "header": "tr|A0A8W4FLL4-1|A0A8W4FLL4_PIG Computationally mapped isoform of Proteasome 20S subunit alpha 2 OS=Sus scrofa OX=9823 GN=PSMA2 PE=1 SV=1 CANONICAL=A0A8W4FNV3-1" }, "locus": { "chromosome": "18", "start_pos": 51919687, "end_pos": 51914872, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096245.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096245.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079197.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079197.1" } ] } }, { "isoform_ac": "A0A8W4FNV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3/entry", "sequence": { "sequence": "MCGLSQRCSYNKYLRMCGFSVYLCFFLSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVKDYLAAIA", "length": 248, "header": "tr|A0A8W4FNV3-1|A0A8W4FNV3_PIG Isoform 1 of Proteasome subunit alpha type-2 OS=Sus scrofa OX=9823 GN=PSMA2 PE=1 SV=1 CANONICAL=A0A8W4FNV3-1" }, "locus": { "chromosome": "18", "start_pos": 51919687, "end_pos": 51912980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101830.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101830.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080852.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080852.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "response to virus", "id": "GO:0009615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009615", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "regulation of proteasomal protein catabolic process", "id": "GO:0061136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061136", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "proteasome core complex, alpha-subunit complex", "id": "GO:0019773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019773", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNV3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": 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Forms a complex with RABEP1 that acts as Rab4/Rab5 effector regulating endosome fusion. Involved in endocytic membrane fusion and membrane trafficking of recycling endosomes. Also functions as a ubiquitin ligase.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SVQ1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVQ1#function" }, { "database": "UniProtKB", "id": "ARBA00094214", "url": "https://www.uniprot.org/uniprotkb/ARBA00094214#function" }, { "database": "UniProtKB", "id": "F1RJI2", "url": "https://www.uniprot.org/uniprotkb/F1RJI2#function" }, { "database": "UniProtKB", "id": "A0A5G2QSH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJI2", "url": "https://www.uniprot.org/uniprotkb/F1RJI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RABGEF1", "url": "https://www.uniprot.org/uniprotkb/F1RJI2", "locus": { "chromosome": "3", "start_pos": 16308120, 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"categories": [ "Protein Classification" ] }, { "id": "IPR041545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516668", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516668", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTITCAT", "url": "https://omabrowser.org/oma/group/PTITCAT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJI2", "url": "https://www.orthodb.org/?gene=F1RJI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23101", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23101", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23101:SF126", "url": 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"MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKMFLESMHYKRDLSIEEQSECTQDFYQTVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQSLAAIDSENVENDKLPPPLQPQVYAG", "length": 491, "header": "tr|F1RJI2-1|F1RJI2_PIG Isoform 1 of Rab5 GDP/GTP exchange factor OS=Sus scrofa OX=9823 GN=RABGEF1 PE=1 SV=3 CANONICAL=F1RJI2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SVQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SVQ1/entry", "sequence": { "sequence": "MAAAKLKPSREKMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKMFLESMHYKRDLSIEEQSECTQDFYQTVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQSLAAIDSENVENDKLPPPLQPQVYAG", "length": 503, "header": "tr|A0A4X1SVQ1-1|A0A4X1SVQ1_PIG Computationally mapped isoform of Rab5 GDP/GTP exchange factor OS=Sus scrofa OX=9823 GN=RABGEF1 PE=1 SV=1 CANONICAL=F1RJI2-1" }, "locus": { "chromosome": "3", "start_pos": 16362951, "end_pos": 16310188, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098409.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098409.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079605.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079605.1" } ] } }, { "isoform_ac": "A0A5G2QSH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH0/entry", "sequence": { "sequence": "EATSNLRPTAREKMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKMFLESMHYKRDLSIEEQSECTQDFYQTVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQSLAAIDSENVENDKLPPPLQPQVYAG", "length": 504, "header": "tr|A0A5G2QSH0-1|F1RJI2_PIG Computationally mapped isoform of Rab5 GDP/GTP exchange factor OS=Sus scrofa OX=9823 GN=RABGEF1 PE=1 SV=2 CANONICAL=F1RJI2-1" }, "locus": { "chromosome": "3", "start_pos": 16345041, "end_pos": 16310188, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088016.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088016.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064947.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064947.2" } ] } }, { "isoform_ac": "F1RJI2-1", "url": "https://www.uniprot.org/uniprotkb/F1RJI2/entry", "sequence": { "sequence": "MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRVGSKKEIQEAKAPSPSINRQTSIETDRVSKEFIEFLKTFHKTGQEIYKQTKMFLESMHYKRDLSIEEQSECTQDFYQTVAERMQTRGKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKVTKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESENWSPDACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQSLAAIDSENVENDKLPPPLQPQVYAG", "length": 491, "header": "tr|F1RJI2-1|F1RJI2_PIG Isoform 1 of Rab5 GDP/GTP exchange factor OS=Sus scrofa OX=9823 GN=RABGEF1 PE=1 SV=3 CANONICAL=F1RJI2-1" }, "locus": { "chromosome": "3", "start_pos": 16344822, "end_pos": 16310188, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008480.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008480.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008261.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008261.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSH0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSH0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516668", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516668", "resource": "KEGG Pathway" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ABA8-1", "protein_name": "Rab5 GDP/GTP exchange factor", "gene_name": "Rabgef1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGGGDAHPLSQNTGREPAWSIEKKMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQRQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRAGSKKEIQEAKAPSPSINRQTSIETDRVTKEFIDFLKTFHKTGQEVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERLQTRGKVPPEKVEKMMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESESWSPEACLGVKQMYKNLDLLSQLNERQERIMTEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQPLAAIDSENVENDKLPPPLQPQVYAG", "length": 515 }, "evidence": [ { "id": "F1RJI2", "url": "https://omabrowser.org/oma/group/F1RJI2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AMI9-1", "protein_name": "Rab5 GDP/GTP exchange factor", "gene_name": "RABGEF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQTKKMSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAERLQREEEEAYASSQSTQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFTASSRTGAKKAEIQEAKAPSPSINRQASIETDRVSKEFIEFLKTYHKPGQDIYKQCKLFLDTMNHKRDLSIEEQSECAQDFYQNVAEKLQTRWKVPPEKVEKAMDQIEKYIMTRQYKYVFCPETTDDEKKDLTVQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRFMTGQTSPKKQESDSWSPDVCLGVKQMYKNLDLLSQLNERQDRIVSEAKKLEKDLIDWTDGVAKEVQDIVEKYPLEIKPKNQALAAIDSENVENDKLPPPLQPQVYAG", "length": 497 }, "evidence": [ { "id": "F1RJI2", "url": "https://omabrowser.org/oma/group/F1RJI2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9JM13-1", "protein_name": "Rab5 GDP/GTP exchange factor", "gene_name": "Rabgef1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQRQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNEKTRKVTTVKKFFSASSRAGSKKEIQEAKAPSPSINRQTSIETDRVTKEFIDFLKTFHKTGQEVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERMQTRGKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQESESWPPEACLGVKQMYKNLDLLSQLNERQERIMNEAKKLEKDLIDWTDGIAKEVQDIVEKYPLEIKPPNQPLAAIDSENVENDKLPPPLQPQVYAG", "length": 491 }, "evidence": [ { "id": "F1RJI2", "url": "https://omabrowser.org/oma/group/F1RJI2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UJ41-2", "protein_name": "Rab5 GDP/GTP exchange factor", "gene_name": "RABGEF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RJI2", "url": "https://www.uniprot.org/uniprotkb/F1RJI2" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1RJI2", "url": "https://www.uniprot.org/uniprotkb/F1RJI2" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1RJI2", "url": "https://www.uniprot.org/uniprotkb/F1RJI2" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1RJI2", "url": "https://www.uniprot.org/uniprotkb/F1RJI2" } ], "pmid": "" } ] }, { "name": "Cellular Component", 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"MAEITNIRPSFDVSPVVAGLIGASVLVVCVSVTVFVWTCCHQQAEKKHKTPPYKFIHMLKGISIYPETLSNKKKIIKVRRDKDGPGREGGRGNLLVDAAEAGLLGQDKGPGGPSPGSCIDQLPIKVDYGEELRSPIASLTPGESKTTSPSSPEEDVMLGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRKTLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQLTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIAKKKTHVKKCTLNPVFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVTASGAEHWREVCESPRKPVAKWHSLSEY", "length": 431, "header": "tr|F1RLM5-1|F1RLM5_PIG Isoform 1 of Synaptotagmin 11 OS=Sus scrofa OX=9823 GN=SYT11 PE=1 SV=2 CANONICAL=F1RLM5-1" }, "isoforms": [ { "isoform_ac": "A0A8D0QED2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QED2/entry", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000006934.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0QED2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QED2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154741", "resource": "KEGG Pathway" }, { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" } ], "orthologs": [ { "uniprot_canonical_ac": "O08835-1", "protein_name": "Synaptotagmin-11", "gene_name": "Syt11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MAEITNIRPSFDVSPVVAGLIGASVLVVCVSVTVFVWSCCHQQAEKKQKNPPYKFIHMLKGISIYPETLSNKKKIIKVRRDKDGPGREGGRRNLLVDAAEAGLLSRDKDPRGPSSGSCIDQLPIKMDYGEELRSPITSLTPGESKTTSPSSPEEDVMLGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRKTLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQLTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIAKKKTHVKKCTLNPIFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVTASGAEHWREVCESPRKPVAKWHSLSEY", "length": 431 }, "evidence": [ { "id": "F1RLM5", "url": "https://omabrowser.org/oma/group/F1RLM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9R0N3-1", "protein_name": "Synaptotagmin-11", "gene_name": "Syt11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEITNIRPSFDVSPVAAGLIGASVLVVCVSVTVFVWTCCHQQAEKKHKTPPYKFIHMLKGISIYPETLSNKKKIIKVRRDKDGPRRESGRGNLLINAESGLLSHDKDPRGPSPASCMDQLPIKRDYGEELRSPMTSLTPGESKATSPSSPEEDVMLGSLTFSVDYNFPKKALVVTIQEAHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRKTLDPVFDETFTFYGIPYSQLQDLVLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQLTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIAKKKTHVKKCTLNPVFNESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVTTSGAEHWREVCESPRKPIAKWHSLSEY", "length": 430 }, "evidence": [ { "id": "F1RLM5", "url": "https://omabrowser.org/oma/group/F1RLM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 19, "go_terms": [ { "name": "plasma membrane repair", "id": "GO:0001778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001778", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "negative regulation of microglial cell 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"GO:0032720", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032720", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "negative regulation of phagocytosis", "id": "GO:0050765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050765", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "regulation of calcium ion-dependent exocytosis", "id": "GO:0017158", "url": 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activation of synaptic vesicle fusion", "id": "GO:0099502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099502", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "negative regulation of secretion by cell", "id": "GO:1903531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903531", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 14, "go_terms": [ { "name": "phagocytic cup", "id": "GO:0001891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001891", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "exocytic vesicle", "id": "GO:0070382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070382", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "early phagosome", "id": "GO:0032009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032009", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "dopaminergic synapse", "id": "GO:0098691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098691", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F1RLM5", "url": "https://www.uniprot.org/uniprotkb/F1RLM5" } ], "pmid": "" }, { "name": "SNARE binding", "id": "GO:0000149", "url": 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"id": "ENSSSCT00000057469.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057469.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034795.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034795.1" } ] } }, { "isoform_ac": "A0A5G2R2V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2V4/entry", "sequence": { "sequence": "TPKDTMRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDPRKQEIIAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKTMEEPIALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGRNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANKKCDLISVPKKTADMAGVQNEAKLDEILKEIKSIKDTICNQDERISKLEQQMAKIAA", "length": 479, "header": "tr|A0A5G2R2V4-1|F1RGA9_PIG Computationally mapped isoform of Coronin OS=Sus scrofa OX=9823 GN=CORO1C PE=1 SV=1 CANONICAL=F1RGA9-1" }, "locus": { "chromosome": "14", "start_pos": 42142808, "end_pos": 42095590, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087808.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087808.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070672.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070672.1" } ] } }, { "isoform_ac": "F1RGA9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGA9/entry", "sequence": { "sequence": "MRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDPRKQEIIAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKTMEEPIALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGRNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANKKCDLISVPKKTADMAGVQNEAKLDEILKEIKSIKDTICNQDERISKLEQQMAKIAA", "length": 474, "header": "tr|F1RGA9-1|F1RGA9_PIG Isoform 1 of Coronin OS=Sus scrofa OX=9823 GN=CORO1C PE=1 SV=3 CANONICAL=F1RGA9-1" }, "locus": { "chromosome": "14", "start_pos": 42142808, "end_pos": 42097021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010896.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010896.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010611.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010611.3" } ] } }, { "isoform_ac": "I3L920-1", "url": "https://www.uniprot.org/uniprotkb/I3L920/entry", "sequence": { "sequence": "MWVAEPRSGSTLEVNGLARKAQHFGSPCFSPFSLLYTMRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDPRKQEIIAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKTMEEPIALHEMDTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKLHERKCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGRNADPILISLKHGYIPGKNRDLKVVKKNILDSKPTANKKCDLISVPKKTADMAGVQNEAKLDEILKEIKSIKDTICNQDERISKLEQQMAKIAA", "length": 511, "header": "tr|I3L920-1|F1RGA9_PIG Computationally mapped isoform of Coronin OS=Sus scrofa OX=9823 GN=CORO1C PE=1 SV=2 CANONICAL=F1RGA9-1" }, "locus": { "chromosome": "14", "start_pos": 42142808, "end_pos": 42093978, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031523.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031523.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020531.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020531.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L920", "url": "https://www.uniprot.org/uniprotkb/I3L920" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156622", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156622", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "regulation of ruffle assembly", "id": "GO:1900027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900027", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "negative regulation of epithelial cell migration", "id": "GO:0010633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010633", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "regulation of fibroblast migration", "id": "GO:0010762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010762", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "neural crest cell migration", "id": "GO:0001755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001755", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "establishment of protein localization", "id": "GO:0045184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045184", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "negative regulation of focal adhesion assembly", "id": "GO:0051895", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051895", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "negative regulation of substrate adhesion-dependent cell spreading", "id": "GO:1900025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900025", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "positive regulation of lamellipodium morphogenesis", "id": "GO:2000394", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000394", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "positive regulation of osteoclast differentiation", "id": "GO:0045672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045672", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "macrophage chemotaxis", "id": "GO:0048246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048246", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "membrane fission", "id": "GO:0090148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090148", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "endosome membrane tubulation", "id": "GO:0097750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097750", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "endosome fission", "id": "GO:0140285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140285", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "F1RGA9", "url": "https://www.uniprot.org/uniprotkb/F1RGA9" } ], "pmid": "" }, { "name": "lateral plasma membrane", "id": "GO:0016328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016328", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9T5", "url": "https://www.uniprot.org/uniprotkb/I3L9T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9T5-1", "url": "https://www.uniprot.org/uniprotkb/I3L9T5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLLPQLESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA", "length": 439, "header": "tr|A0A8W4FR49-1|A0A8W4FR49_PIG Isoform 1 of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "isoforms": [ { "isoform_ac": "A0A480TNG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A480TNG5/entry", "sequence": { "sequence": "MGQDQTKQQIEKGLQLYQSNQTEKALQVWMKVLEKSSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQIDTARELEDANFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQLGGQVSLSMGNAFLGLSLFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYGKGWSLKYRAMSQYHMAVAYRLLGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRNRGDLETAFPRYDSAMSIMTEIGNRLGQVQVLLGVAKCWVARKALDKALDAIERAQDLAEEVGNKLGQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV", "length": 412, "header": "tr|A0A480TNG5-1|A0A480TNG5_PIG Computationally mapped isoform of 43 kDa receptor-associated protein of the synapse OS=Sus scrofa OX=9823 GN=PSMC3 PE=3 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15180786, "end_pos": 15168088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036890.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036890.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035849.3", "url": "https://www.ensembl.org/id/ENSSSCP00000035849.3" } ] } }, { "isoform_ac": "A0A4X1VKL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VKL2/entry", "sequence": { "sequence": "MGQDQTKQQIEKGLQLYQSNQTEKALQVWMKVLEKSSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQIDTARELEDANFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQLGGQVSLSMGNAFLGLSLFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYGKGWSLKYRAMSQYHMAVAYRLLGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRNRGDLELGQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV", "length": 353, "header": "tr|A0A4X1VKL2-1|A0A4X1VKL2_PIG Computationally mapped isoform of Proteasome 26S subunit, ATPase 3 OS=Sus scrofa OX=9823 GN=PSMC3 PE=3 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15180786, "end_pos": 15168088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044038.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044038.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054390.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054390.2" } ] } }, { "isoform_ac": "A0A4X1VPQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VPQ3/entry", "sequence": { "sequence": "MGQDQTKQQIEKGLQLYQSNQTEKALQVWMKVLEKSSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQIDTARELEDANFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQLGGQVSLSMGNAFLGLSLFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKESMKIALQHGDRPLQALCLLCFADIHRNRGDLETAFPRYDSAMSIMTEIGNRLGQVQVLLGVAKCWVARKALDKALDAIERAQDLAEEVGNKLGQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV", "length": 359, "header": "tr|A0A4X1VPQ3-1|A0A4X1VPQ3_PIG Computationally mapped isoform of Proteasome 26S subunit, ATPase 3 OS=Sus scrofa OX=9823 GN=PSMC3 PE=3 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15180786, "end_pos": 15168088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039348.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039348.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041277.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041277.2" } ] } }, { "isoform_ac": "A0A4X1VSB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSB6/entry", "sequence": { "sequence": "MNLLPQLESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKLLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA", "length": 397, "header": "tr|A0A4X1VSB6-1|A0A8W4FR49_PIG Computationally mapped isoform of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15191111, "end_pos": 15185690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014459.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014459.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014067.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014067.4" } ] } }, { "isoform_ac": "A0A5G2Q9I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9I2/entry", "sequence": { "sequence": "MLSQVMGFRHSRPDLPPSQSPASPPRLCPGGLPRQRARAELGRWQEPGAVDTSCICSGEERGESPAQDGRTGPEMNLLPQLESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA", "length": 513, "header": "tr|A0A5G2Q9I2-1|A0A8W4FR49_PIG Computationally mapped isoform of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15191111, "end_pos": 15180468, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091007.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091007.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059968.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059968.1" } ] } }, { "isoform_ac": "A0A5G2QSU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU8/entry", "sequence": { "sequence": "MKSPAFTEPTPLDWLFLCLDHSLPGPQNEGRKEGTHGGVWPSHPAPSLCLLQDYEKALFFPCKAAELVNDYGKGWSLKYRAMSQYHMAVAYRLLGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRNRGDLETAFPRYDSAMSIMTEIGNRLGQVQSSAGVKKDIINLSPRLLSGLIFNLLLQEMNLLPQLESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA", "length": 629, "header": "tr|A0A5G2QSU8-1|A0A5G2QSU8_PIG Computationally mapped isoform of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15191111, "end_pos": 15176841, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070776.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070776.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068006.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068006.1" } ] } }, { "isoform_ac": "A0A8D0VZ90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VZ90/entry", "sequence": { "sequence": "MGQDQTKQQIEKGLQLYQSNQTEKALQVWMKVLEKSSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQIDTARELEDANFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQLGGQVSLSMGNAFLGLSLFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYGKGWSLKYRAMSQYHMAVAYRLLGHLGSAMECCETAFPRYDSAMSIMTEIGNRLGQVQVLLGVAKCWVARKALDKALDAIERAQDLAEEVGNKLGQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGEKNSRLQALPCSHIFHLRCLQNNGTRSCPNCRRSSMKPGFV", "length": 379, "header": "tr|A0A8D0VZ90-1|A0A8W4FR49_PIG Computationally mapped isoform of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15180786, "end_pos": 15168088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047694.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047694.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039934.3", "url": "https://www.ensembl.org/id/ENSSSCP00000039934.3" } ] } }, { "isoform_ac": "A0A8D1YR24-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1YR24/entry", "sequence": { "sequence": "MGQDQTKQQIEKGLQLYQSNQTEKALQVWMKVLEKSSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQIDTARELEDANFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQLGGQVSLSMGNAFLGLSLFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKEMNLLPQLESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA", "length": 617, "header": "tr|A0A8D1YR24-1|A0A8W4FR49_PIG Computationally mapped isoform of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15191111, "end_pos": 15168088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060329.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060329.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034659.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034659.2" } ] } }, { "isoform_ac": "A0A8W4FR49-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FR49/entry", "sequence": { "sequence": "MNLLPQLESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA", "length": 439, "header": "tr|A0A8W4FR49-1|A0A8W4FR49_PIG Isoform 1 of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=1 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15191111, "end_pos": 15185690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100718.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100718.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080996.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080996.1" } ] } }, { "isoform_ac": "I3L9T5-1", "url": "https://www.uniprot.org/uniprotkb/I3L9T5/entry", "sequence": { "sequence": "MGQDQTKQQIEKGLQLYQSNQTEKALQVWMKVLEKSSDLVGRFRVLGCLVTAHSEMGRYKEMLKFAVVQIDTARELEDANFLLESYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGAQLGGQVSLSMGNAFLGLSLFQKALESFEKALRYAHNNDDAMLECRVCCSLGSFYAQVKDYEKALFFPCKAAELVNDYGKGWSLKYRAMSQYHMAVAYRLLGHLGSAMECCEESMKIALQHGDRPLQALCLLCFADIHRNRGDLETAFPRYDSAMSIMTEIGNRLGQVQVLLGVAKCWVARKALDKALDAIERAQDLAEEVGNKLGQLKLHCLSESIYRSKGLQRELRAHVVRFHECVEETELYCGLCGESIGEKNSRLQALPCSHIFHLRLCPGGLPRQRARAELGRWQEPGAVDTSCICSGEERGESPAQDGRTGPVSGQSPLLPKVPAEQWDAELPQLPPLIHEAWLCVTLPGLHLASPAPLPSPWSAPPPPPPPD", "length": 497, "header": "tr|I3L9T5-1|A0A8W4FR49_PIG Computationally mapped isoform of 26S proteasome regulatory subunit 6A OS=Sus scrofa OX=9823 GN=PSMC3 PE=1 SV=3 CANONICAL=A0A8W4FR49-1" }, "locus": { "chromosome": "2", "start_pos": 15180869, "end_pos": 15168088, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025570.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025570.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020798.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020798.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VSB6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VSB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512454", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512454", "resource": "KEGG Pathway" }, { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", 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"A0A5G2QSV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHX9", "url": "https://www.uniprot.org/uniprotkb/F1RHX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHX9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGSEELALREDTLKVLAAFLRRDEAAGSPILSPPRSPAQEEQTDFLSRLRRCLPCSLGRGAVPPESPRPCSLPLRPCYGSEPGPATPDFYALVAQRLEQLVQEQLRSPPSPELQGHPPTEKEALLRKLVALLEEEAEVINQKLASDPALQRKLARLSAGSFSRLVELFSNREGSPGPSQARPSMPCPGPPPPSPEPLARLALAMELTRRVAGLGGTLAGLSVEHVHSFAPWIQAHGGWEGILAVSPVDLNLPLD", "length": 255, "header": "tr|F1RHX9-1|F1RHX9_PIG Isoform 1 of BCL2 like 12 OS=Sus scrofa OX=9823 GN=BCL2L12 PE=3 SV=3 CANONICAL=F1RHX9-1" }, "isoforms": [ { "isoform_ac": "A0A287A9D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9D9/entry", "sequence": { "sequence": "MAGSEELALREDTLKVLAAFLRRDEAAGSPILSPPRSPAQEEQTDFLSRLRRCLPCSLGRGAVPPESPRPCSLPLRPCYGSEPGPATPDFYALVAQRLEQLVQEQLRSPPSPELQGHPPTEKEALLRKLVALLEEEAEVINQKEGILAVSPVDLNLPLD", "length": 159, "header": "tr|A0A287A9D9-1|A0A287A9D9_PIG Computationally mapped isoform of BCL2 like 12 OS=Sus scrofa OX=9823 GN=BCL2L12 PE=3 SV=1 CANONICAL=F1RHX9-1" }, "locus": { "chromosome": "6", "start_pos": 54713952, "end_pos": 54708017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061857.1", "url": "https://www.ensembl.org/id/ENSSSCT00000061857.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040417.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040417.1" } ] } }, { "isoform_ac": "A0A287AN22-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AN22/entry", "sequence": { "sequence": "MAGSEELALREDTLKVLAAFLRRDEAAGSPILSPPRSPAQEEQTDFLSRLRRCLPCSLGRGAVPPESPRPCSLPLRPCYGSEPGPATPDFYALVAQRLEQLVQEQLRSPPSPGGHPGSFTCGLELTPGLNSASEAVPRS", "length": 139, "header": "tr|A0A287AN22-1|A0A287AN22_PIG Computationally mapped isoform of BCL2 like 12 OS=Sus scrofa OX=9823 GN=BCL2L12 PE=3 SV=2 CANONICAL=F1RHX9-1" }, "locus": { "chromosome": "6", "start_pos": 54713984, "end_pos": 54708017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043787.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043787.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045402.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045402.2" } ] } }, { "isoform_ac": "A0A4X1VXB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXB1/entry", "sequence": { "sequence": "MAGSEELALREDTLKVLAAFLRRDEAAGSPILSPPRSPAQEEQTDFLSRLRRCLPCSLGVEHVHSFAPWIQAHGGWEGILAVSPVDLNLPLD", "length": 92, "header": "tr|A0A4X1VXB1-1|F1RHX9_PIG Computationally mapped isoform of BCL2 like 12 OS=Sus scrofa OX=9823 GN=BCL2L12 PE=3 SV=1 CANONICAL=F1RHX9-1" }, "locus": { "chromosome": "6", "start_pos": 54713952, "end_pos": 54708017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072992.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072992.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068030.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068030.1" } ] } }, { "isoform_ac": "A0A5G2QSV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSV8/entry", "sequence": { "sequence": "MAGSEELALREDTLKVLAAFLRRDEAAGSPILSPPRPSYSRLLRPGGPEAGTAGPRATEIPTPRITGSPTHRKGSPAAEAGGLAGGGGRSHKPEAGLRPCLAAQIGPPLCRLLQPPSGALLKPGGQPWPKPSTPLDAVPWAPAAFPGAPGPPGPGYGADPARGRAGGHPGWTQCRACAQLRTLDPGPWGLGGHPGSFTCGLELTPGLNSASEAVPRSDLRSLRSFPKSPCSTQGCGVAAALSVFAKKKKPKNKKLFKTLSY", "length": 261, "header": "tr|A0A5G2QSV8-1|F1RHX9_PIG Computationally mapped isoform of BCL2 like 12 OS=Sus scrofa OX=9823 GN=BCL2L12 PE=3 SV=2 CANONICAL=F1RHX9-1" }, "locus": { "chromosome": "6", "start_pos": 54714116, "end_pos": 54708017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082562.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082562.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068016.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068016.2" } ] } }, { "isoform_ac": "F1RHX9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHX9/entry", "sequence": { "sequence": "MAGSEELALREDTLKVLAAFLRRDEAAGSPILSPPRSPAQEEQTDFLSRLRRCLPCSLGRGAVPPESPRPCSLPLRPCYGSEPGPATPDFYALVAQRLEQLVQEQLRSPPSPELQGHPPTEKEALLRKLVALLEEEAEVINQKLASDPALQRKLARLSAGSFSRLVELFSNREGSPGPSQARPSMPCPGPPPPSPEPLARLALAMELTRRVAGLGGTLAGLSVEHVHSFAPWIQAHGGWEGILAVSPVDLNLPLD", "length": 255, "header": "tr|F1RHX9-1|F1RHX9_PIG Isoform 1 of BCL2 like 12 OS=Sus scrofa OX=9823 GN=BCL2L12 PE=3 SV=3 CANONICAL=F1RHX9-1" }, "locus": { "chromosome": "6", "start_pos": 54713952, "end_pos": 54708017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003528.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003528.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003445.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003445.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 87, "start_aa": "Thr", "end_pos": 87, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VXB1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VXB1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521559", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521559", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z9I2-1", "protein_name": "Bcl2 like 12", "gene_name": "Bcl2l12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGSEELGLQEDTLKVLTAFLRRGETAGSPVPTPPRSPAQEETTDFLSRLRRCLPCPLGREAPPPESSRPCFLPLRPCYGSEPGPASSDFYALVAQRLEQLVQEQLKSPPSSEIQGPPPTEKEALLRRLVALLEEEAEVINQKLASDPALHRKLARLSAGSFARLVELFSSRGGSSSPNCSSPSMPCPGPPPPSPDPLARLALAMELSRRVAGLGGTLASLSIEHVHSFAPWIQAHGGWAGILATSPVDLNLPLD", "length": 255 }, "evidence": [ { "id": "F1RHX9", "url": "https://omabrowser.org/oma/group/F1RHX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IHC8-1", "protein_name": "Bcl-2-like protein 12 isoform X1", "gene_name": "Bcl2l12", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGSEDLGLREDTLRVLAAFLRRGEAAGSPVPTPPRNPAQEEPTDFLSRLRRCLPCPLGRGAPPLESSRPCFLPLRPCYGSQPGPASSDFYALVAQRLEQLVQEQLRSPPSPEFQGPPSTEKEALLRRLVALLEEEAEVINQKLASDPALHRRLARLSAGSFARLVELFSSREVSSSPNCASPSLPCPAPPPPSPEPLARLALAMELSRRVAGLGGTLAGLSVEHVHSFAPWIQAHGGWAGILAMSPVDLNLPLD", "length": 255 }, "evidence": [ { "id": "F1RHX9", "url": "https://omabrowser.org/oma/group/F1RHX9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9HB09-1", "protein_name": "Bcl-2-like protein 12", "gene_name": "BCL2L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGSEELGLREDTLRVLAAFLRRGEAAGSPVPTPPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPCSLPIRPCYGLEPGPATPDFYALVAQRLEQLVQEQLKSPPSPELQGPPSTEKEAILRRLVALLEEEAEVINQKLASDPALRSKLVRLSSDSFARLVELFCSRDDSSRPSRACPGPPPPSPEPLARLALAMELSRRVAGLGGTLAGLSVEHVHSFTPWIQAHGGWEGILAVSPVDLNLPLD", "length": 250 }, "evidence": [ { "id": "F1RHX9", "url": "https://omabrowser.org/oma/group/F1RHX9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1RHX9", "url": "https://www.uniprot.org/uniprotkb/F1RHX9" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "F1RHX9", "url": "https://www.uniprot.org/uniprotkb/F1RHX9" } ], "pmid": "" }, { "name": "negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator", "id": "GO:1902166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902166", "evidence": [ { "database": "UniProtKB", "id": "F1RHX9", "url": "https://www.uniprot.org/uniprotkb/F1RHX9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RHX9", "url": "https://www.uniprot.org/uniprotkb/F1RHX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RHX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 255, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RHX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RHX9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 87 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", 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"PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A8Y6", "url": "https://www.uniprot.org/uniprotkb/A0A287A8Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6U4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6U4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYE8-1", 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"MLTDGGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPAPGVGGGGSGAGGGDAALDFKLAAAVLRTGGGGSASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTEVSQLTPPSQDQSQVPRVPMHTLAMVVPPQEPDRTSQENSSAILGVQKGTSKQKSSSLQVADQDVLPPFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQKDTVSLQQQCSHRGVFPEGEGDGGLSEDHFSELPQVDTILFKDNDVDDEQQPPASAEQIDFVPVQPLSSPQCNFTSELGSNGTNSLDLQKVSGNHQIIGQPQIALTGHDQGPLVQEPDGLMVATPAQTLTDTLDDLIAAVSSRVPTGSNNSSQTTECLTPEPCSQSPSNVASQSIPSVYPSVDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLINRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVRAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKRKQEEDEENKPKENSELPEDEDEEENDEDVEQEVPIEPPSATTTTTIGISATSATFTNVFGKKRANVVTTPSTNRKNKKNKTKETPPTAHLILPEQHISLAQQKAEKNKINGEPRGGGAGGNSDSDNLDSTDCNSESSSGGKSQELNFTVDVNSSSDRRYPSLLLHSQEEKTSTTASKTQTRLEGEVNSNSLSTSYKSVSLPLSSSNIKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLINALIQDPAKELEDLIPKNHIRTPASTKSIHANFSSGVGTTAASSKNTFPLGAPSLVTSQATTLSTFQPSNKLSKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTFSPSPNTWGPFPVRPVNPGNTNSSPKHNNTGRLPNQNGTVLPSESAGLAPASCPITVSSVVAASQQLCVTNTRTPSSVRKQLFACVPKTSPPATAISSVTSTCSSLPSVSSVPVTTGQGPTTFPPASTPQAQLSSQKMESFSAMPPPKEKVSAQDQSMATLCTPSSTANSCSSSASNTPGAPETRPSGSPTPPSSNTQEEAQPSGASDLSPMAMPFASTSEPAPLTLASPRLVAADNQDTSNLPHLALPAPRVSHRMQPRGSFYSVVPNATIHQDPQSIFVTNPVPITPPQGPPAAVQLSSAMNIMNGSQMHINPANKSLPPTFGPATLFNHFSSLFDNSQVPANQGWGDGPLSSRVAADASFTVQSAFLGNSVLGHLENVHPDNSKAPGFRSPSQRVSTSPVGLPSIDPSGSSPSSSSAPLTNFSGIPGTRVFLQGPAPVGTPSFNRQHFSPHPWTSTSNSSTSAPPTLGQPKGGSASQDRKIPPPIGTERLARIRQGGSVAQAPVGTSFVAPVGHSGIWSFGVNAVSEGLSGWSQSVIGNHPMHQQLSDPSTFSQHQPMERDDSGMVAPSNIFHQPMASSFVDFSKGLPISMYGGTIIPSHPQLADVPGGPLFNGLHNPDPAWNPMIKVIQNSTECTDAQQIWPGTWAPHIGNMHLKYVN", "length": 2540, "header": "tr|F1RGE8-1|F1RGE8_PIG Isoform 1 of Ankyrin repeat and KH domain containing 1 OS=Sus scrofa OX=9823 GN=ANKHD1 PE=4 SV=5 CANONICAL=F1RGE8-1" }, "isoforms": [ { "isoform_ac": "A0A287A8Y6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8Y6/entry", "sequence": { "sequence": "MLTDGGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPAPGVGGGGSGAGGGDAALDFKLAAAVLRTGGGGSASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLAAGQAGGHEDYFGGHRSGQASGEGGL", "length": 576, "header": "tr|A0A287A8Y6-1|A0A287A8Y6_PIG Computationally mapped isoform of Ankyrin repeat and KH domain containing 1 OS=Sus scrofa OX=9823 GN=ANKHD1 PE=4 SV=3 CANONICAL=F1RGE8-1" }, "locus": { "chromosome": "2", "start_pos": 142233407, "end_pos": 142166410, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047944.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047944.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040254.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040254.3" } ] } }, { "isoform_ac": "A0A5G2Q6U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6U4/entry", "sequence": { "sequence": "MLTDGGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPAPGVGGGGSGAGGGDAALDFKLAAAVLRTGGGGSASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTEVSQLTPPSQDQSQVPRVPMHTLAMVVPPQEPDRTSQENSSAILGVQKGTSKQKSSSLQVADQDVLPPFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQKDTVSLQQQCSHRGVFPEGEGDGGLSEDHFSELPQVDTILFKDNDVDDEQQPPASAEQIDFVPVQPLSSPQCNFTSELGSNGTNSLDLQKVSGNHQIIGQPQIALTGHDQGPLVQEPDGLMVATPAQTLTDTLDDLIAAVSSRVPTGSNNSSQTTECLTPEPCSQSPSNVASQSIPSVYPSVDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLINRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVRAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKRKQEEDEENKPKENSELPEDEDEEENDEDVEQEVPIEPPSATTTTTIGISATSATFTNVFGKKRANVVTTPSTNRKNKKNKTKETPPTAHLILPEQHISLAQQKAEKNKINGEPRGGGAGGNSDSDNLDSTDCNSESSSGGKSQELNFTVDVNSSSDRRYPSLLLHSQEEKTSTTASKTQTRLEGEVNSNSLSTSYKSVSLPLSSSNIKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLINALIQDPAKELEDLIPKNHIRTPASTKSIHANFSSGVGTTAASSKNTFPLGAPSLVTSQATTLSTFQPSNKLSKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTFSPSPNTWGPFPVRPVNPGNTNSSPKHNNTGRLPNQNGTVLPSESAGLAPASCPITVSSVVAASQQLCVTNTRTPSSVRKQLFACVPKTSPPATAISSVTSTCSSLPSVSSVPVTTGQGPTTFPPASTPQAQLSSQKMESFSAMPPPKEKVSAQDQSMATLCTPSSTANSCSSSASNTPGAPETRPSGSPTPPSSNTQEEAQPSGASDLSPMAMPFASTSEPAPLTLASPRLVAADNQDTSNLPHLALPAPRVSHRMQPRGSFYSVVPNATIHQDPQSIFVTNPVPITPPQGPPAAVQLSSAMNIMNGSQMHINPANKSLPPTFGPATLFNHFSSLFDNSQVPANQGWGDGPLSSRVAADASFTVQSAFLGNSVLGHLENVHPDNSKAPGFRSPSQRVSTSPVATSAPPTLGQPKGGSASQDRKIPPPIGTERLARIRQGGSVAQAPVGTSFVAPVGHSGIWSFGVNAVSEGLSGWSQSVIGNHPMHQQLSDPSTFSQHQPMERDDSGMVAPSNIFHQPMASSFVDFSKGLPISMYGGTIIPSHPQLADVPGGPLFNGLHNPDPAWNPMIKVIQNSTECTDAQQIWPGTWAPHIGNMHLKYVN", "length": 2481, "header": "tr|A0A5G2Q6U4-1|F1RGE8_PIG Computationally mapped isoform of Ankyrin repeat and KH domain containing 1 OS=Sus scrofa OX=9823 GN=ANKHD1 PE=4 SV=2 CANONICAL=F1RGE8-1" }, "locus": { "chromosome": "2", "start_pos": 142297664, "end_pos": 142166410, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066842.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066842.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059743.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059743.2" } ] } }, { "isoform_ac": "A0A5G2QYE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYE8/entry", "sequence": { "sequence": "MLTDGGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPAPGVGGGGSGAGGGDAALDFKLAAAVLRTGGGGSASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLDKQEDMKTILEGIDPAKHQVRVAFDACKLLHKE", "length": 622, "header": "tr|A0A5G2QYE8-1|F1RGE8_PIG Computationally mapped isoform of Ankyrin repeat and KH domain containing 1 OS=Sus scrofa OX=9823 GN=ANKHD1 PE=4 SV=2 CANONICAL=F1RGE8-1" }, "locus": { "chromosome": "2", "start_pos": 142233435, "end_pos": 142166410, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089174.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089174.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063239.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063239.2" } ] } }, { "isoform_ac": "F1RGE8-1", "url": "https://www.uniprot.org/uniprotkb/F1RGE8/entry", "sequence": { "sequence": "MLTDGGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPAPGVGGGGSGAGGGDAALDFKLAAAVLRTGGGGSASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLDAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFAEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTEVSQLTPPSQDQSQVPRVPMHTLAMVVPPQEPDRTSQENSSAILGVQKGTSKQKSSSLQVADQDVLPPFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQKDTVSLQQQCSHRGVFPEGEGDGGLSEDHFSELPQVDTILFKDNDVDDEQQPPASAEQIDFVPVQPLSSPQCNFTSELGSNGTNSLDLQKVSGNHQIIGQPQIALTGHDQGPLVQEPDGLMVATPAQTLTDTLDDLIAAVSSRVPTGSNNSSQTTECLTPEPCSQSPSNVASQSIPSVYPSVDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLINRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVRAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKRKQEEDEENKPKENSELPEDEDEEENDEDVEQEVPIEPPSATTTTTIGISATSATFTNVFGKKRANVVTTPSTNRKNKKNKTKETPPTAHLILPEQHISLAQQKAEKNKINGEPRGGGAGGNSDSDNLDSTDCNSESSSGGKSQELNFTVDVNSSSDRRYPSLLLHSQEEKTSTTASKTQTRLEGEVNSNSLSTSYKSVSLPLSSSNIKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLINALIQDPAKELEDLIPKNHIRTPASTKSIHANFSSGVGTTAASSKNTFPLGAPSLVTSQATTLSTFQPSNKLSKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTFSPSPNTWGPFPVRPVNPGNTNSSPKHNNTGRLPNQNGTVLPSESAGLAPASCPITVSSVVAASQQLCVTNTRTPSSVRKQLFACVPKTSPPATAISSVTSTCSSLPSVSSVPVTTGQGPTTFPPASTPQAQLSSQKMESFSAMPPPKEKVSAQDQSMATLCTPSSTANSCSSSASNTPGAPETRPSGSPTPPSSNTQEEAQPSGASDLSPMAMPFASTSEPAPLTLASPRLVAADNQDTSNLPHLALPAPRVSHRMQPRGSFYSVVPNATIHQDPQSIFVTNPVPITPPQGPPAAVQLSSAMNIMNGSQMHINPANKSLPPTFGPATLFNHFSSLFDNSQVPANQGWGDGPLSSRVAADASFTVQSAFLGNSVLGHLENVHPDNSKAPGFRSPSQRVSTSPVGLPSIDPSGSSPSSSSAPLTNFSGIPGTRVFLQGPAPVGTPSFNRQHFSPHPWTSTSNSSTSAPPTLGQPKGGSASQDRKIPPPIGTERLARIRQGGSVAQAPVGTSFVAPVGHSGIWSFGVNAVSEGLSGWSQSVIGNHPMHQQLSDPSTFSQHQPMERDDSGMVAPSNIFHQPMASSFVDFSKGLPISMYGGTIIPSHPQLADVPGGPLFNGLHNPDPAWNPMIKVIQNSTECTDAQQIWPGTWAPHIGNMHLKYVN", "length": 2540, "header": "tr|F1RGE8-1|F1RGE8_PIG Isoform 1 of Ankyrin repeat and KH domain containing 1 OS=Sus scrofa OX=9823 GN=ANKHD1 PE=4 SV=5 CANONICAL=F1RGE8-1" }, "locus": { "chromosome": "2", "start_pos": 142297664, "end_pos": 142166410, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015694.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015694.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015281.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015281.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2069, "start_aa": "Thr", "end_pos": 2069, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2069", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2166, "start_aa": "Thr", "end_pos": 2166, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2166", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2321, "start_aa": "Thr", "end_pos": 2321, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2321", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6U4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6U4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E9PUR0-1", "protein_name": "Ankyrin repeat and KH domain containing 1", "gene_name": "Ankhd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTDSGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPAPGVGGGGGGGGGSSSSSSAGGGDAALDFKLAAAVLRTGGGGGASGSDEDEVSEVESFILDQEDLDNPVLKTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAENTHSTGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFIDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGAHLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLTSPSQDESQVPRVPIHTLAMVVPPQEPDRTSQETSTALLGVQKGASKQKSSSLQVADQDLLPPFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQRDTESPHQQCSNRGVFMAGEEDGSLPQDHSSESPQLDTVLFKDHDIDDKQQSPPSAEQIDFVPVQPLSSPQCNFFSDLGSNGTNSLVLQKVSGNQQIVGQPQIAIAGHEQGLLVQEPDGLMVATPAQTLTDTLDDLIAAVSTRVPVGSNNPSQTTECPTPESCYQTPSNMATPSTPPVYPSVDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLINRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVQAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVSQFPSDIECMRYIATITDKELLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKRKQEDEENKPKENSEQPEGEDEENDEDVEQEIPIEPPSATTTTTIGISATSTTFTNVFGKKRANVVTTPSTNRKNKKNKTKESPPTAHLILPEPHISLAQQKADKNKINGEPRGGGAGGNSDSDNIDSTDCNSESSSGGKSQEFSFPVDVNPASDKRCSTVVSSQEEKAVTTTSKTQTRLDGEVNSMSTSYKSLPLSSPTMKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLINALIQDPAKELEDLIPKNHIRTPASTKSIHTNFSSGVGTTATSSKNAFPLGAPALVTSQATTLSTFQPTNKLSKNVPTNVRSPFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTFSPSPNTWGPFPVRPVNPGNTSSSPKHNNTARLPNQNGPVLPSESPGLATTGCPITVSSVVAASQQLCMTNSRTPSSVRKQLFACVPKTSPPATVISSVTSTSSSLPSVSSTSITSGHVTTTFMPAPTQVPLSSQKVESFSVIPPPKEKVSTQDQPLTNLCTPSPAATSCNSSASNTSGAPEAHPSSTPPPPPGNTQEEGQPSKASDLSPVSMPFASNSETAPLTLASPRLVAADNRDTGSLPQLTVPAPRVSHRMQPRGSFYSVVPNATMHQDPQSIFVTNPVPLTPPQGPPAAVQLSSAVNIMNGSQVHINPANKSLQPTFGPATLFNHFSSLFDSGQVPANQGWGDGPLPSRVAADASFTVQSAFLSNSVLGHLENVHPDNSKAPGFRPPSQRVSTSPVGLPSIDPSGNSPSAAAPLTSFSGIPGTRVFLQGPAPVGTPSFNRQHFSPHPWTSASNTCDSPIPSVSSGSSSPLSATSAPPTLGQQPKGNSASQDRKIPPPIGTERLARIRQGGSVAQAPVGTSFVAPVGHGGIWSFGVNAMSEGLSGWSQSVIGNHPMHQQLSDPSTFSQHQPMERDDSGMVAPTNIFHQPMGLPISMYGGTIIPSHPQLADVPGGPLFNGLHNPDPAWNPMIKVIQNSAECTEAQQIWPGTWAPHIGNMHLKYVN", "length": 2548 }, "evidence": [ { "id": "F1RGE8", "url": "https://omabrowser.org/oma/group/F1RGE8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWZ3-1", "protein_name": "Ankyrin repeat and KH domain-containing protein 1", "gene_name": "ANKHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTDSGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPASGVGSSGGGGSGSGTGGGDAALDFKLAAAVLRTGGGGGASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMKAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNKGDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDHGAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLMEASQEGHLELVKYLLASGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLPPPSQDQSQVPRVPTHTLAMVVPPQEPDRTSQENSPALLGVQKGTSKQKSSSLQVADQDLLPSFHPYQPLECIVEETEGKLNELGQRISAIEKAQLKSLELIQGEPLNKDKIEELKKNREEQVQKKKKILKELQKVERQLQMKTQQQFTKEYLETKGQKDTVSLHQQCSHRGVFPEGEGDGSLPEDHFSELPQVDTILFKDNDVDDEQQSPPSAEQIDFVPVQPLSSPQCNFSSDLGSNGTNSLELQKVSGNQQIVGQPQIAITGHDQGLLVQEPDGLMVATPAQTLTDTLDDLIAAVSTRVPTGSNSSSQTTECLTPESCSQTTSNVASQSMPPVYPSVDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVVEILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNRNTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIHRGAHIDVRNKKGNTPLWLASNGGHFDVVQLLVQAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIECMRYIATITDKELLKKCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALAAKREKRKEKRKKKKEEQKRKQEEDEENKPKENSELPEDEDEEENDEDVEQEVPIEPPSATTTTTIGISATSATFTNVFGKKRANVVTTPSTNRKNKKNKTKETPPTAHLILPEQHMSLAQQKADKNKINGEPRGGGAGGNSDSDNLDSTDCNSESSSGGKSQELNFVMDVNSSKYPSLLLHSQEEKTSTATSKTQTRLEGEVTPNSLSTSYKTVSLPLSSPNIKLNLTSPKRGQKREEGWKEVVRRSKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGGTESTRYAVQLINALIQDPAKELEDLIPKNHIRTPASTKSIHANFSSGVGTTAASSKNAFPLGAPTLVTSQATTLSTFQPANKLNKNVPTNVRSSFPVSLPLAYPHPHFALLAAQTMQQIRHPRLPMAQFGGTFSPSPNTWGPFPVRPVNPGNTNSSPKHNNTSRLPNQNGTVLPSESAGLATASCPITVSSVVAASQQLCVTNTRTPSSVRKQLFACVPKTSPPATVISSVTSTCSSLPSVSSAPITSGQAPTTFLPASTSQAQLSSQKMESFSAVPPTKEKVSTQDQPMANLCTPSSTANSCSSSASNTPGAPETHPSSSPTPTSSNTQEEAQPSSVSDLSPMSMPFASNSEPAPLTLTSPRMVAADNQDTSNLPQLAVPAPRVSHRMQPRGSFYSMVPNATIHQDPQSIFVTNPVTLTPPQGPPAAVQLSSAVNIMNGSQMHINPANKSLPPTFGPATLFNHFSSLFDSSQVPANQGWGDGPLSSRVATDASFTVQSAFLGNSVLGHLENMHPDNSKAPGFRPPSQRVSTSPVGLPSIDPSGSSPSSSSAPLASFSGIPGTRVFLQGPAPVGTPSFNRQHFSPHPWTSASNSSTSAPPTLGQPKGVSASQDRKIPPPIGTERLARIRQGGSVAQAPAGTSFVAPVGHSGIWSFGVNAVSEGLSGWSQSVMGNHPMHQQLSDPSTFSQHQPMERDDSGMVAPSNIFHQPMASGFVDFSKGLPISMYGGTIIPSHPQLADVPGGPLFNGLHNPDPAWNPMIKVIQNSTECTDAQQIWPGTWAPHIGNMHLKYVN", "length": 2542 }, "evidence": [ { "id": "F1RGE8", "url": "https://omabrowser.org/oma/group/F1RGE8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RGE8", "url": "https://www.uniprot.org/uniprotkb/F1RGE8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RGE8", "url": "https://www.uniprot.org/uniprotkb/F1RGE8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RGE8", "url": "https://www.uniprot.org/uniprotkb/F1RGE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1RGE8", "url": "https://www.uniprot.org/uniprotkb/F1RGE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1007, "end_pos": 1009, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1008, "end_pos": 1010, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1147, "end_pos": 1149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1422, "end_pos": 1424, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1543, "end_pos": 1545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1610, "end_pos": 1612, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1616, "end_pos": 1618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1674, "end_pos": 1676, "annotation": "n_glycosylation_sequon" }, { 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 939, "end_pos": 941, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGE8" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 1692, "end_pos": 1762, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], 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"end_pos": 941 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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}, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RF78-1", "uniprot_ac": "F1RF78", "uniprot_id": "F1RF78_PIG", "mass": { "chemical_mass": 71958.0, "monoisotopic_mass": 71958.0 }, "refseq": {}, "gene_names": [ { "name": "KIAA2013", "type": "recommended", "evidence": [ { "id": "F1RF78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RF78" } ] } ], "protein_names": [ { "name": "KIAA2013", "type": "synonym", "evidence": [ { "id": "F1RF78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RF78/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RF78", "url": "https://www.uniprot.org/uniprotkb/F1RF78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIAA2013", "url": "https://www.uniprot.org/uniprotkb/F1RF78", "locus": { "chromosome": "6", "start_pos": 71976019, "end_pos": 71981673, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003432", "url": "https://www.ensembl.org/id/ENSSSCG00000003432" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003432", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003432", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525404", "url": "https://www.ncbi.nlm.nih.gov/gene/100525404", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q8X8", "url": "https://www.orthodb.org/?gene=A0A5G2Q8X8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31386", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31386", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31386:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31386:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10222", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10222", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8X8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8X8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF78", "url": "https://www.uniprot.org/uniprotkb/F1RF78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF78-1", "url": "https://www.uniprot.org/uniprotkb/F1RF78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFAGSGARRAAGGLQLLPWPRGKPGAAEPSACLEAATRAWHGLRERGEAVPLGPGVPALVANGYLVLDVVGNRLWVTPGEREPSVAPDFLPFVQLRPLSALSEAGESVLLLREGLLRRVRCLQLGTPGSGPAAAGPASASGFVTGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQAVGPTAGPGPRAFTSTLEKVGDHQFLLYSGRSPLFSTGLVYLVVVAAKKLVNRLQVAPKTQLDETVLWVVHVSGLLDAHGLRSKAAKELKVLQDLARKEMLELLEMPAAELLQDHQRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPDLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGHLSSVQQILQLWDLWRLTLQKRGCKGLVRAGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNSYALHGIRYKNDHINLAVLADAEGKPYLHVSVASRGQPIKIYACEAGCLDEPVELTSAPQGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKVPSRRVFRAWAPALRSVSRLGWGRPGQE", "length": 655, "header": "tr|F1RF78-1|F1RF78_PIG Isoform 1 of KIAA2013 OS=Sus scrofa OX=9823 GN=KIAA2013 PE=1 SV=3 CANONICAL=F1RF78-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8X8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8X8/entry", "sequence": { "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFAGSGARRAAGGLQLLPWPRGKPGAAEPSACLEAATRAWHGLRERGEAVPLGPGVPALVANGYLVLDVVGNRLWVTPGEREPSVAPDFLPFVQLRPLSALSEAGESVLLLREGLLRRVRCLQLGTPGSGPAAAGPASASGFVTGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQAVGPTAGPGPRAFTSTLEKVGDHQFLLYSGRSPLFSTGLVYLVVVAAKKLVNRLQVAPKTQLDETVLWVVHVSGLLDAHGLRSKAAKELKVLQDLARKEMLELLEMPAAELLQDHQRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPDLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGHLSSVQQILQLWDLWRLTLQKRGCKGLVRAGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNSYALHGIRYKNDHINLAVLADAEGKPYLHVSVASRGQPIKIYACEAGCLDEPVELTSAPQGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKGFPGKHRRAALVSGPGRGRF", "length": 647, "header": "tr|A0A5G2Q8X8-1|F1RF78_PIG Computationally mapped isoform of KIAA2013 OS=Sus scrofa OX=9823 GN=KIAA2013 PE=1 SV=2 CANONICAL=F1RF78-1" }, "locus": { "chromosome": "6", "start_pos": 71981506, "end_pos": 71976969, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074002.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074002.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060711.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060711.2" } ] } }, { "isoform_ac": "F1RF78-1", "url": "https://www.uniprot.org/uniprotkb/F1RF78/entry", "sequence": { "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLLGLLVLLLWFAGSGARRAAGGLQLLPWPRGKPGAAEPSACLEAATRAWHGLRERGEAVPLGPGVPALVANGYLVLDVVGNRLWVTPGEREPSVAPDFLPFVQLRPLSALSEAGESVLLLREGLLRRVRCLQLGTPGSGPAAAGPASASGFVTGSGRDCVLLQEDFLAHRGRPHVYLQRIQLNNPTERVAALQAVGPTAGPGPRAFTSTLEKVGDHQFLLYSGRSPLFSTGLVYLVVVAAKKLVNRLQVAPKTQLDETVLWVVHVSGLLDAHGLRSKAAKELKVLQDLARKEMLELLEMPAAELLQDHQRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPDLSHRERDQMESTLNYEDHCFSGHATMHAENLWPGHLSSVQQILQLWDLWRLTLQKRGCKGLVRAGAPGILQGMVLSFGGLQFTENHLQFQADPDVLHNSYALHGIRYKNDHINLAVLADAEGKPYLHVSVASRGQPIKIYACEAGCLDEPVELTSAPQGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKVPSRRVFRAWAPALRSVSRLGWGRPGQE", "length": 655, "header": "tr|F1RF78-1|F1RF78_PIG Isoform 1 of KIAA2013 OS=Sus scrofa OX=9823 GN=KIAA2013 PE=1 SV=3 CANONICAL=F1RF78-1" }, "locus": { "chromosome": "6", "start_pos": 71981506, "end_pos": 71977738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003810.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003810.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003723.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003723.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 110, "start_aa": "Thr", "end_pos": 110, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr110", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 222, "start_aa": "Thr", "end_pos": 222, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr222", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8X8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8X8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RF78", "url": "https://www.uniprot.org/uniprotkb/F1RF78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 110, 222 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 361, "end_pos": 363 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", 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}, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RLG2-1", "uniprot_ac": "F1RLG2", "uniprot_id": "F1RLG2_PIG", "mass": { "chemical_mass": 78792.0, "monoisotopic_mass": 78792.0 }, "refseq": {}, "gene_names": [ { "name": "EPB41L4A", "type": "recommended", "evidence": [ { "id": "F1RLG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ] } ], "protein_names": [ { "name": "Band 4.1-like protein 4A", "type": "recommended", "evidence": [ { "id": "F1RLG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RLG2/entry#names_and_taxonomy" } ] }, { "name": "Band 4.1-like protein 5", "type": "synonym", "evidence": [ { "id": "F1RLG2", 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"url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q913", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q913", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q913-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q913-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLG2-1", "url": "https://www.uniprot.org/uniprotkb/F1RLG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCFCAVPEEFYCEVLLLNESKLTLTTQQQGIKKSTKGSVVLEHVFRHINLVEIDYFGLRYCDRNHQTYWLDPAKTLAEHKELINTGPPYTLYFGVKFYAEDPCKLKEEITRYQFFLQVKQDVLQGRLPCPVNTAAQLGAYAIQSELGDYDPYKHTAGYVSEYRFVPDQKEELEEAIERIHKTLMGQAPSEAELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQFELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPENESNSLSRKLSKFGSISYKHRYSGRTALQMSRDLSIQLPRPDQNVARSRSKTYPKRIAQTQPAGSNSINRVTANMENGENEGTTKIIAPSPVKSFKKAKNENSPDTQRSKSHAPWEENGPQSGLYNSPHDRTKSPKFPYARRRNPSCGSDNDSVQPTRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSAPQWEAVLRRQKEKSQADPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPYTKIETQGDPIRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSSDAQGSGGSTVHQRRSGSKDSLIEEKSQTSTSNLTGKHTAKTIKTIQASRLKIET", "length": 686, "header": "tr|F1RLG2-1|F1RLG2_PIG Isoform 1 of Band 4.1-like protein 4A OS=Sus scrofa OX=9823 GN=EPB41L4A PE=4 SV=3 CANONICAL=F1RLG2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q913-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q913/entry", "sequence": { "sequence": "MGCFCAVPEEFYCEVLLLNESKLTLTTQQQGIKKSTKGSVVLEHVFRHINLVEIDYFGLRYCDRNHQTYWLDPAKTLAEHKELINTGPPYTLYFGVKFYAEDPCKLKEEITRYQFFLQVKQDVLQGRLPCPVNTAAQLGAYAIQSELGDYDPYKHTAGYVSEYRFVPDQKEELEEAIERIHKTLMGQAPSEAELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQFELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPENESNSLSRKLSKFGSISYKHRYSGRTALQMSRDLSIQLPRPDQNVARSRSKTYPKRIAQTQPAGSNSINRVTANMENGENEGTTKIIAPSPVKSGLYNSPHDRTKSPKFPYARRRNPSCGSDNDSVQPTRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSAPQWEAVLRRQKEKSQADPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPYTKIETQGDPIRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSSDAQGSGGSTVHQRRSGSKDSLIEEKSQTSTSNLTGKHTAKTIKTIQASRLKIET", "length": 658, "header": "tr|A0A5G2Q913-1|F1RLG2_PIG Computationally mapped isoform of Band 4.1-like protein 4A OS=Sus scrofa OX=9823 GN=EPB41L4A PE=4 SV=1 CANONICAL=F1RLG2-1" }, "locus": { "chromosome": "2", "start_pos": 117501111, "end_pos": 117236551, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066446.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066446.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060412.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060412.1" } ] } }, { "isoform_ac": "A0A5G2QM63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM63/entry", "sequence": { "sequence": "MGCFCAVPEEFYCEVLLLNESKLTLTTQQQGIKYWLDPAKTLAEHKELINTGPPYTLYFGVKFYAEDPCKLKEEITRYQFFLQVKQDVLQGRLPCPVNTAAQLGAYAIQSELGDYDPYKHTAGYVSEYRFVPDQKEELEEAIERIHKTLMGQAPSEAELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQFELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPENESNSLSRKLSKFGSISYKHRYSGRTALQMSRDLSIQLPRPDQNVARSRSKTYPKRIAQTQPAGSNSINRVTANMENGENEGTTKIIAPSPVKSFKKAKNENSPDTQRSKSHAPWEENGPQSGLYNSPHDRTKSPKFPYARRRNPSCGSDNDSVQPTRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSAPQWEAVLRRQKEKSQADPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPYTKIETQGDPIRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSSDAQGSGGSTVHQRRSGSKDSLIEEKSQTSTSNLTGKHTAKTIKTIQASRLKIET", "length": 651, "header": "tr|A0A5G2QM63-1|F1RLG2_PIG Computationally mapped isoform of Band 4.1-like protein 4A OS=Sus scrofa OX=9823 GN=EPB41L4A PE=4 SV=2 CANONICAL=F1RLG2-1" }, "locus": { "chromosome": "2", "start_pos": 117501111, "end_pos": 117236551, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069317.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069317.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065120.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065120.2" } ] } }, { "isoform_ac": "F1RLG2-1", "url": "https://www.uniprot.org/uniprotkb/F1RLG2/entry", "sequence": { "sequence": "MGCFCAVPEEFYCEVLLLNESKLTLTTQQQGIKKSTKGSVVLEHVFRHINLVEIDYFGLRYCDRNHQTYWLDPAKTLAEHKELINTGPPYTLYFGVKFYAEDPCKLKEEITRYQFFLQVKQDVLQGRLPCPVNTAAQLGAYAIQSELGDYDPYKHTAGYVSEYRFVPDQKEELEEAIERIHKTLMGQAPSEAELNYLRTAKSLEMYGVDLHPVYGENKSEYFLGLTPVGVVVYKNKKQVGKYFWPRITKVHFKETQFELRVLGKDCNETSFFFEARSKTACKHLWKCSVEHHTFFRMPENESNSLSRKLSKFGSISYKHRYSGRTALQMSRDLSIQLPRPDQNVARSRSKTYPKRIAQTQPAGSNSINRVTANMENGENEGTTKIIAPSPVKSFKKAKNENSPDTQRSKSHAPWEENGPQSGLYNSPHDRTKSPKFPYARRRNPSCGSDNDSVQPTRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESENSNREHRKKRNRIRQENDMVDSAPQWEAVLRRQKEKSQADPNNRRSRHRSRSRSPDIQAKEELWKHIQKELVDPSGLSEEQLKEIPYTKIETQGDPIRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTRSSDAQGSGGSTVHQRRSGSKDSLIEEKSQTSTSNLTGKHTAKTIKTIQASRLKIET", "length": 686, "header": "tr|F1RLG2-1|F1RLG2_PIG Isoform 1 of Band 4.1-like protein 4A OS=Sus scrofa OX=9823 GN=EPB41L4A PE=4 SV=3 CANONICAL=F1RLG2-1" }, "locus": { "chromosome": "2", "start_pos": 117501111, "end_pos": 117236551, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015527.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015527.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015116.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015116.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q913", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q913" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cytoskeletal protein binding", "id": "GO:0008092", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008092", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actomyosin structure organization", "id": "GO:0031032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031032", "evidence": [ { "database": "UniProtKB", "id": "F1RLG2", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 450, "end_pos": 452, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 664, "end_pos": 666, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RLG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RLG2" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 299, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 19, "end_pos": 21 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 300, "end_pos": 302 }, { "start_pos": 450, "end_pos": 452 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 664, "end_pos": 666 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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[ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RM61", "url": "https://www.uniprot.org/uniprotkb/F1RM61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGAP33", "url": "https://www.uniprot.org/uniprotkb/F1RM61", "locus": { "chromosome": "6", "start_pos": 45213653, "end_pos": 45199456, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039135", "url": "https://www.ensembl.org/id/ENSSSCG00000039135" } ] } } ], "crossref": [ { "id": "F1RM61", "url": "https://alphafold.ebi.ac.uk/entry/F1RM61", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039135", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039135", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR037646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22045", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22045", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22045:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22045:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27936", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27936", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BB07", "url": "https://www.uniprot.org/uniprotkb/A0A287BB07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB07-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TIN5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TIN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9M9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM61", "url": "https://www.uniprot.org/uniprotkb/F1RM61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM61-1", "url": "https://www.uniprot.org/uniprotkb/F1RM61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGRDCLSIFSTQDSPFGDASLGRSHYWPSRSQTWHPKTLSSSRSQRSRLPEAPKALATCPNSSELFEESWPPSSGTPSPPSTTEGQMGASPPPTLTDSGDSVVAKYINRFRQAQPTSREERQSAGPTPADFWWLQPESPDPNRQLAEGASEPEGRLSTSIPTLAKVASASQAKATAPLQEIKQSLNTWNSSLLDLETLSLQSRAARLLKRSPSDASSSSFPISSDGLSPFSITFTPDSSKGSVPKAEATPAPAPVPASAPVSSRAPLRPEDDILYQWRQRRKLEQARGSQGDGTWVLPGTPALTTTVPVPISRQTSAPTETLSSLGTQPNCLPLWGSVAPPFPKEAFPVERPIIPGFSPPIFWGPSPHGFFWAPQPGPWVSLGATPSMPPASTTAPPASTSAPQASTSTPPASTPTPPASTSAPPAAPQGLPTPAPSSPAESERQRSKPRRSRTPSRGSAGRVKAAEDGPGPQLKGALGQVVAARLFPDSLEDTPPRPEGPPPPEAESRKVKAAPFQSKVTSPRPEVTAPLSESWCPQAETPPARSEAESQNGKAMLPLAGPVPRKDKDTPWTEAGRLLPKVPPPPAEEAATRVKAPPPPLKAGLLEVVATPSTAAGHASSDLLSQAARLLKAAEDSDGSEFQDDPVLQVLRVQRAELRQQKRKVDTQLSRLLGHTEDPGSWSPPARSPPGVPRNATAERRRLC", "length": 705, "header": "tr|F1RM61-1|F1RM61_PIG Isoform 1 of Proline and serine rich 3 OS=Sus scrofa OX=9823 GN=ARHGAP33 PE=4 SV=4 CANONICAL=F1RM61-1" }, "isoforms": [ { "isoform_ac": "A0A287BB07-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB07/entry", "sequence": { "sequence": "METLSSSRSQRSRLPEAPKALATCPNSSELFEESWPPSSGTPSPPSTTEGQMGASPPPTLTDSGDSVVAKYINRFRQAQPTSREERQSAGPTPADFWWLQPESPDPNRQLAEGASEPEGRLSTSIPTLAKVASASQAKATAPLQEIKQSLNTWNSSLLDLETLSLQSRAARLLKRSKASISSSSLSPSDASSSSFPISSDGLSPFSITFTPDSSKGSVPKAEATPAPAPVPASAPVSSRAPLRPEDDILYQWRQRRKLEQARGSQGDGTWVLPGTPALTTTVPVPISRQTSAPTETLSSLGTQPNCLPLWGSVAPPFPKEAFPVERPIIPGFSPPIFWGPSPHGFFWAPQPGPWVSLGATPSMPPASTTAPPASTSAPQASTSTPPASTPTPPASTSAPPAAPQGLPTPAPSSPAESERQRSKPRRSRTPSRGSAGRVKAAEDGPGPQLKGALGQVVAARLFPDSLEDTPPRPEGPPPPEAESRKVKAAPFQSKVTSPRPEVTAPLSESWCPQAETPPARSEAESQNGKAMLPLAGPVPRKDKDTPWTEAGRLLPKVPPPPAEEAATRVKAPPPPLKAGLLEVVATPSTAAGHASSDLLSQAARLLKAAEDSDGSEFQDDPVLQVLRVQRAELRQQKRKVDTQLSRLLGHTEDPGSWSPPARSPPGVPRNATAERRRLC", "length": 679, "header": "tr|A0A287BB07-1|A0A287BB07_PIG Computationally mapped isoform of Proline and serine rich 3 OS=Sus scrofa OX=9823 GN=ARHGAP33 PE=4 SV=1 CANONICAL=F1RM61-1" }, "locus": { "chromosome": "6", "start_pos": 45194991, "end_pos": 45186324, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055553.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055553.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053696.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053696.1" } ] } }, { "isoform_ac": "A0A4X1TIN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TIN5/entry", "sequence": { "sequence": "MDRRYINRFRQAQPTSREERQSAGPTPADFWWLQPESPDPNRQLAEAGASEPEGRLSTSIPTLAKVASASQAKATAPLQEIKQVTSPWSTPSSACLN", "length": 97, "header": "tr|A0A4X1TIN5-1|A0A4X1TIN5_PIG Computationally mapped isoform of Proline and serine rich 3 OS=Sus scrofa OX=9823 GN=PROSER3 PE=4 SV=1 CANONICAL=F1RM61-1" }, "locus": { "chromosome": "6", "start_pos": 45188683, "end_pos": 45185164, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100373.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100373.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076932.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076932.1" } ] } }, { "isoform_ac": "A0A5G2Q9M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9M9/entry", "sequence": { "sequence": "METLSSSRSQRSRLPEAPKALATCPNSSELFEESWPPSSGTPSPPSTTEGQMGASPPPTLTDSGDSVVAKYINRFRQAQPTSREERQSAGPTPADFWWLQPESPDPNRQLAEGASEPEGRLSTSIPTLAKVASASQAKATAPLQEIKQSLNTWNSSLLDLETLSLQSRAARLLKRSDASSSSFPISSDGLSPFSITFTPDSSKGSVPKAEAPVSSRAPLRPEDDILYQWRQRRKLEQARGSQGDGTWVLPGTPALTTTVPVPISRQTSAPTETLSSLGTQPNCLPLWGSVAPPFPKEAFPVERPIIPGFSPPIFWGPSPHGFFWAPQPGPWVSLGATPSMPPASTTAPPASTSAPQASTSTPPASTPTPPASTSAPPAAPQGLPTPAPSSPAESERQRSKPRRSRTPSRGSAGRVKAAEDGPGPQLKGALGQVVAARLFPDSLEDTPPRPEGPPPPEAESRKVKAAPFQSKVTSPRPEVTAPLSESWCPQAETPPARSEAESQNGKAMLPLAGPVPRKDKDTPWTEAGRLLPKVPPPPAEEAATRVKAPPPPLKAGLLEVVATPSTAAGHASSDLLSQAARLLKAAEDSDGSEFQDDPVLQVLRVQRAELRQQKRKVDTQLSRLLGHTEDPGSWSPPARSPPGVPRNATAERRRLC", "length": 656, "header": "tr|A0A5G2Q9M9-1|F1RM61_PIG Computationally mapped isoform of Proline and serine rich 3 OS=Sus scrofa OX=9823 GN=ARHGAP33 PE=4 SV=1 CANONICAL=F1RM61-1" }, "locus": { "chromosome": "6", "start_pos": 45194991, "end_pos": 45186324, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080246.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080246.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061024.1" } ] } }, { "isoform_ac": "F1RM61-1", "url": "https://www.uniprot.org/uniprotkb/F1RM61/entry", "sequence": { "sequence": "MTGRDCLSIFSTQDSPFGDASLGRSHYWPSRSQTWHPKTLSSSRSQRSRLPEAPKALATCPNSSELFEESWPPSSGTPSPPSTTEGQMGASPPPTLTDSGDSVVAKYINRFRQAQPTSREERQSAGPTPADFWWLQPESPDPNRQLAEGASEPEGRLSTSIPTLAKVASASQAKATAPLQEIKQSLNTWNSSLLDLETLSLQSRAARLLKRSPSDASSSSFPISSDGLSPFSITFTPDSSKGSVPKAEATPAPAPVPASAPVSSRAPLRPEDDILYQWRQRRKLEQARGSQGDGTWVLPGTPALTTTVPVPISRQTSAPTETLSSLGTQPNCLPLWGSVAPPFPKEAFPVERPIIPGFSPPIFWGPSPHGFFWAPQPGPWVSLGATPSMPPASTTAPPASTSAPQASTSTPPASTPTPPASTSAPPAAPQGLPTPAPSSPAESERQRSKPRRSRTPSRGSAGRVKAAEDGPGPQLKGALGQVVAARLFPDSLEDTPPRPEGPPPPEAESRKVKAAPFQSKVTSPRPEVTAPLSESWCPQAETPPARSEAESQNGKAMLPLAGPVPRKDKDTPWTEAGRLLPKVPPPPAEEAATRVKAPPPPLKAGLLEVVATPSTAAGHASSDLLSQAARLLKAAEDSDGSEFQDDPVLQVLRVQRAELRQQKRKVDTQLSRLLGHTEDPGSWSPPARSPPGVPRNATAERRRLC", "length": 705, "header": "tr|F1RM61-1|F1RM61_PIG Isoform 1 of Proline and serine rich 3 OS=Sus scrofa OX=9823 GN=ARHGAP33 PE=4 SV=4 CANONICAL=F1RM61-1" }, "locus": { "chromosome": "6", "start_pos": 45194991, "end_pos": 45184686, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003204.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003204.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003123.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003123.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 128, "start_aa": "Thr", "end_pos": 128, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr128", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 250, "start_aa": "Thr", "end_pos": 250, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 386, "start_aa": "Thr", "end_pos": 386, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr386", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 417, "start_aa": "Thr", "end_pos": 417, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr417", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 77, "start_aa": "Thr", "end_pos": 77, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr77", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9M9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9M9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RM61-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 705, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RM61-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RM61" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 77, 128, 250, 386, 417 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 190, "end_pos": 192 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 696, "end_pos": 698 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK00-1", "uniprot_ac": "F1RK00", "uniprot_id": "F1RK00_PIG", "mass": { "chemical_mass": 192696.0, "monoisotopic_mass": 192696.0 }, "refseq": {}, "gene_names": [ { "name": "ZC3H13", "type": "recommended", "evidence": [ { "id": "F1RK00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK00" } ] } ], "protein_names": [ { "name": "Zinc finger CCCH-type containing 13", "type": "synonym", "evidence": [ { "id": "F1RK00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK00/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK00", "url": 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"https://www.uniprot.org/uniprotkb/F1RK00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1641, "header": "tr|F1RK00-1|F1RK00_PIG Isoform 1 of Zinc finger CCCH-type containing 13 OS=Sus scrofa OX=9823 GN=ZC3H13 PE=4 SV=5 CANONICAL=F1RK00-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QA93-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA93/entry", "sequence": { "sequence": 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"length": 1574, "header": "tr|A0A5G2QA93-1|F1RK00_PIG Computationally mapped isoform of Zinc finger CCCH-type containing 13 OS=Sus scrofa OX=9823 GN=ZC3H13 PE=4 SV=1 CANONICAL=F1RK00-1" }, "locus": { "chromosome": "11", "start_pos": 21386173, "end_pos": 21304895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071342.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071342.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060288.1" } ] } }, { "isoform_ac": "F1RK00-1", "url": "https://www.uniprot.org/uniprotkb/F1RK00/entry", "sequence": { "sequence": "MSKIRRKVTVENTKTISDSTSRRPSVFERLGPSTGSSAETQCRNWLKTGNCLYGNTCRFVHGPSPRGKGYSSNYRRSPERPTGDLRERMKNKRQDVDTESQKRNTEESSSPVRKESSRGRHREKEDIKITKERTPESEEENVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMEKREEIIIKKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKSSSSASKKDRKTTAVSSPLLDQQRNSKSNQSKKKGPRTPSPPPPIQEDIALGKKYKEKYKVKDRIEEKPRDGKDRGRDFERQREKRDKPRSSSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPRRKRTPSPSYQRTITPPLRRSASPYASHSLSSPQRKQSPPRHRSPLREKGRHDHERTSQSHDRRHERREETRGKRDREKDAREEREYEQDQGSSRDHRDDREPREGRERRDARDTRDRRELRDSRDLRDSREMRDYSRDNKESRDPRDSRSARDAHDYRDRESRDAHRKEDAYQEESRSYGRNHLREESSRTEVRNDSRNESRSEMRNDRMGRSRGRGPELPEKGSRGTRGSQIDSHSSSSNYHDSWETRSSYPERDRYPERENREQARDSSFERRHGERERRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRAEDRRDERARERDRERDRERERERERERDREREKERELERERAREREREREREKERDRDRERDRDHDRERERERERDREKEREASGSEERERERERERERERAREREKERDRQRDWEDKDKGREERREKRDDAREDRNPRDGHEERKSKKRYRNEGSPSPRQSPKRRREHSPDSDTYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQSRWKEEDRKPERKESSRRYDEQEFKERVSSVDKQREQIEITESSRTRAQDVLGHHLSEDRDMSDRAHDENKKKAKIQKKPLKKKKEDDVGIDRGTTETVSEDSQVFSPRKGQKKKSIEKKRKRSKGDSDLSDEEAVQQSKRRRGPRTPPITSKEELVEISNDRDGTLEDAQKKEDTAFSDWSDEDVPDRAEGAEPEHGATAATPARTPSPSSLPPPPPPLAATTPAAGAATTMSTSATPTSGTNTAFASEDSHRKCHRTRAEKVEAPHVTIEDATHRKPVDQKRSSSLGSNRSNRSHTSGRLRSPSSDSAHRSGDDQSGRKRVLHSGSRDREKTKSLEIAGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHERERERERRDARQREWERDADKDWPRNRDRDRLRERERERDKRRDVDRERERLISDSMERDRDRDRTFESSQIESVKRSEAKLESDHERDLEGTSRDSAALDKERMDKDLGLVPGFEDASKAERTESVEAGDDESKLDDAHSLGSGAGEGYEPISDDELDEILAGDAEKREDQQDEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVMLRVGISKKLAGSELFTKVKETCQRLLEKPKDADSVFEHELGALNMAALLRKEERASLLSDLGPCCKALCFRRDSAIRKQLVKNEKGTIKQAYTNAPLVDNELLRLSLRLFKRKTTCHTPGPEKTEDNKLAQSSIQQELCVS", "length": 1641, "header": "tr|F1RK00-1|F1RK00_PIG Isoform 1 of Zinc finger CCCH-type containing 13 OS=Sus scrofa OX=9823 GN=ZC3H13 PE=4 SV=5 CANONICAL=F1RK00-1" }, "locus": { "chromosome": "11", "start_pos": 21386173, "end_pos": 21304895, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010315.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010315.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010047.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010047.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1083, "start_aa": "Thr", "end_pos": 1083, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1083", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QA93", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QA93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RK00", "url": "https://www.uniprot.org/uniprotkb/F1RK00" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "RNA N6-methyladenosine methyltransferase complex", "id": "GO:0036396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036396", "evidence": [ { "database": "UniProtKB", "id": "F1RK00", "url": "https://www.uniprot.org/uniprotkb/F1RK00" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1RK00", "url": "https://www.uniprot.org/uniprotkb/F1RK00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of stem cell population maintenance", "id": "GO:2000036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000036", "evidence": [ { "database": "UniProtKB", "id": "F1RK00", "url": "https://www.uniprot.org/uniprotkb/F1RK00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1171, "end_pos": 1173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1174, "end_pos": 1176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 546, "end_pos": 548, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": 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[] }, { "id": "ENSSSCG00000003371", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003371", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16518", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16518", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16518:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16518:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QBQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIL9", "url": "https://www.uniprot.org/uniprotkb/F1RIL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RIL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQSPASSVCTMSDERRLPGSAVGWLACGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHMLNVAVPIATYAVVQLRRQRPDYEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVRWPVNYRLSNAKKQAVHTVMGIWMVSFVLSALPAVGWHDTSERFYTHGCRFIVAEIGLGFGVCFLLLVGGSVAMGVVCTAIALFQTLAGQVGRRADRRAFTVPTIVVEDAQGKRRSSIDGSEPAKTSLQITGLVATIVLIYDCLMGFPVLVVSFSSLRADASAPWMALCVLWCSVTQALLLPVFLWACDRYRADLRAVWEKCLALLANEEDSDEDTSLEGGISPDLVLERAGDYSCGGDFVALDRMAKYELSALEGGLPQFCPLQPLQEDKMQYLQVGTGRAGVPPTRRFSHDDADVWAAVPLPSFLPRWGSGEDLAALVLPGGPDRRRGSLLAFAEDAPPFRPRRRSAESLLSLRPPAAAEGRRRREPQALRRPRAPRRPFPARAPAPDGAEPGGDAAPPGGGGAQGSPGPRQAAPVHAHAGTLRTGLSASWGEPGGLRAGGGGGGSTSSFLSSPSESSGYVTLHSDSLGSAS", "length": 597, "header": "tr|F1RIL9-1|F1RIL9_PIG Isoform 1 of G protein-coupled receptor 153 OS=Sus scrofa OX=9823 GN=GPR153 PE=4 SV=5 CANONICAL=F1RIL9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QBQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBQ5/entry", "sequence": { "sequence": "MSQSPASSVCTMSDERRLPGSAVGWLACGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHMLNVAVPIATYAVVQLRRQRPDYEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVRWPVNYRLSNAKKQAVHTVMGIWMVSFVLSALPAVGWHDTSERFYTHGCRFIVAEIGLGFGVCFLLLVGGSVAMGVVCTAIALFQTLAGQVGRRADRRAFTVPTIVVEDAQGKRRSSIDGSEPAKTSLQITGLVATIVLIYDCLMGFPVLVVSFSSLRADASAPWMALCVLWCSVTQALLLPVFLWACDRYRADLRAVWEKCLALLANEEDSDEDTSLEGGISPDLVLERAGDYSCGGDFVALDRMAKYELSALEGGLPQFCPLQPLQEDKMQYLQVPPTRRFSHDDADVWAAVPLPSFLPRWGSGEDLAALVLPGGPDRRRGSLLAFAEDAPPFRPRRRSAESLLSLRPPAAAEGRRRREPQALRRPRAPRRPFPARAPAPDGAEPGGDAAAPVHAHAGTLRTGLSASWGEPGGLRAGGGGGGSTSSFLSSPSESSGYVTLHSDSLGSAS", "length": 574, "header": "tr|A0A5G2QBQ5-1|F1RIL9_PIG Computationally mapped isoform of G protein-coupled receptor 153 OS=Sus scrofa OX=9823 GN=GPR153 PE=4 SV=2 CANONICAL=F1RIL9-1" }, "locus": { "chromosome": "6", "start_pos": 67144431, "end_pos": 67138964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084976.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084976.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061479.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061479.2" } ] } }, { "isoform_ac": "F1RIL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RIL9/entry", "sequence": { "sequence": "MSQSPASSVCTMSDERRLPGSAVGWLACGGLSLLANAWGILSVGAKQKKWKPLEFLLCTLAATHMLNVAVPIATYAVVQLRRQRPDYEWNEGLCKVFVSTFYTLTLATCFSVTSLSYHRMWMVRWPVNYRLSNAKKQAVHTVMGIWMVSFVLSALPAVGWHDTSERFYTHGCRFIVAEIGLGFGVCFLLLVGGSVAMGVVCTAIALFQTLAGQVGRRADRRAFTVPTIVVEDAQGKRRSSIDGSEPAKTSLQITGLVATIVLIYDCLMGFPVLVVSFSSLRADASAPWMALCVLWCSVTQALLLPVFLWACDRYRADLRAVWEKCLALLANEEDSDEDTSLEGGISPDLVLERAGDYSCGGDFVALDRMAKYELSALEGGLPQFCPLQPLQEDKMQYLQVGTGRAGVPPTRRFSHDDADVWAAVPLPSFLPRWGSGEDLAALVLPGGPDRRRGSLLAFAEDAPPFRPRRRSAESLLSLRPPAAAEGRRRREPQALRRPRAPRRPFPARAPAPDGAEPGGDAAPPGGGGAQGSPGPRQAAPVHAHAGTLRTGLSASWGEPGGLRAGGGGGGSTSSFLSSPSESSGYVTLHSDSLGSAS", "length": 597, "header": "tr|F1RIL9-1|F1RIL9_PIG Isoform 1 of G protein-coupled receptor 153 OS=Sus scrofa OX=9823 GN=GPR153 PE=4 SV=5 CANONICAL=F1RIL9-1" }, "locus": { "chromosome": "6", "start_pos": 67144431, "end_pos": 67138964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003741.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003741.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003655.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003655.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1RIL9", "url": "https://www.uniprot.org/uniprotkb/F1RIL9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RIL9", "url": "https://www.uniprot.org/uniprotkb/F1RIL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIL9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 597, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RIL9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RIL9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIL9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 230, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMF6-1", "uniprot_ac": "F1RMF6", "uniprot_id": "F1RMF6_PIG", "mass": { "chemical_mass": 33832.0, "monoisotopic_mass": 33832.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100517803", "type": "recommended", "evidence": [ { "id": "F1RMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" } ] } ], "protein_names": [ { "name": "Glycine N-acyltransferase-like protein", "type": "recommended", "evidence": [ { "id": "F1RMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF6/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.-", "type": "synonym", "evidence": [ { "id": "F1RMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMF6", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100517803", "url": "https://www.uniprot.org/uniprotkb/F1RMF6", "locus": {} } ], "crossref": [ { "id": "F1RMF6", "url": "https://alphafold.ebi.ac.uk/entry/F1RMF6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013150", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013150", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QTHICHT", "url": "https://omabrowser.org/oma/group/QTHICHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15298", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15298", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15298:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15298:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08444", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08444", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A7E5", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJ40", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVQ4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJT6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMF6", "url": "https://www.uniprot.org/uniprotkb/F1RMF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMF6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "KMLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKARVFQVSSMDVTHAALVNKFWHFGGNERSQRFIERCIRNFLSICLLGPEGTPISWSLMDQTGEIRMGATLPEYRGQGLISNLLCVHIQALDERGFPTYMHTDKANKTVQKINHNLHHIPFPCGWNQWNCVPL", "length": 293, "header": "tr|F1RMF6-1|F1RMF6_PIG Isoform 1 of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=3 CANONICAL=F1RMF6-1" }, "isoforms": [ { "isoform_ac": "A0A287A7E5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E5/entry", "sequence": { "sequence": "MRKERKFKRFLSVMVVQSLGVSIYSAEKFTVPVFKIPHAKVPAKMLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKASNQECFKSHPWMLPTLPW", "length": 223, "header": "tr|A0A287A7E5-1|A0A287A7E5_PIG Computationally mapped isoform of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=2 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 38965, "end_pos": 27208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040911.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040911.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039734.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039734.2" } ] } }, { "isoform_ac": "A0A287AJ40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ40/entry", "sequence": { "sequence": "MFSTKSFRVSGLTFRSLIHLEIICVYGVRKGSNFLLFHVHGMSFHLFVSSAKVPAKMLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKASNQECFKSHPWMLPTLPW", "length": 235, "header": "tr|A0A287AJ40-1|A0A287AJ40_PIG Computationally mapped isoform of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=2 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 36837, "end_pos": 27208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047075.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047075.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043906.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043906.2" } ] } }, { "isoform_ac": "A0A287AVQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVQ4/entry", "sequence": { "sequence": "MRKERKFKRFLSVMAKVPAKMLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKASNQECFKSHPWMLPTLPW", "length": 199, "header": "tr|A0A287AVQ4-1|A0A287AVQ4_PIG Computationally mapped isoform of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=2 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 38965, "end_pos": 27208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048283.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048283.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048005.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048005.2" } ] } }, { "isoform_ac": "A0A5G2QC32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC32/entry", "sequence": { "sequence": "MLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKARARIGAAAIGLHHSHSKARSKWHLQPRPQLTPLDP", "length": 196, "header": "tr|A0A5G2QC32-1|F1RMF6_PIG Computationally mapped isoform of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=2 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 36202, "end_pos": 27974, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091565.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091565.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061624.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061624.2" } ] } }, { "isoform_ac": "A0A5G2QLZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLZ7/entry", "sequence": { "sequence": "MLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKARAPCVLRSPPHLKSHLILLSTP", "length": 183, "header": "tr|A0A5G2QLZ7-1|F1RMF6_PIG Computationally mapped isoform of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=1 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 36202, "end_pos": 28272, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079754.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079754.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065050.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065050.1" } ] } }, { "isoform_ac": "A0A8W4FJT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJT6/entry", "sequence": { "sequence": "MGLTLGFLPSSTHAKVPAKMLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKAR", "length": 181, "header": "tr|A0A8W4FJT6-1|F1RMF6_PIG Computationally mapped isoform of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=1 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 36621, "end_pos": 29196, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102484.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102484.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079486.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079486.1" } ] } }, { "isoform_ac": "F1RMF6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMF6/entry", "sequence": { "sequence": "KMLHLQSAQMLLRLEKCLRKSLPESLKVYGTIFHMNQGNPFKLKALVDKWPDFNTVVIRPQEQEMTDDFDHHTNTYQIYSKDLKNCHEALSTSDVINWKQHLQIQSSQPSLDEVIQNLATTKFIKVKQTQRILYITPEMAIKLLPSLPETKNLPPGYSRPKARVFQVSSMDVTHAALVNKFWHFGGNERSQRFIERCIRNFLSICLLGPEGTPISWSLMDQTGEIRMGATLPEYRGQGLISNLLCVHIQALDERGFPTYMHTDKANKTVQKINHNLHHIPFPCGWNQWNCVPL", "length": 293, "header": "tr|F1RMF6-1|F1RMF6_PIG Isoform 1 of Glycine N-acyltransferase-like protein OS=Sus scrofa OX=9823 GN=LOC100517803 PE=1 SV=3 CANONICAL=F1RMF6-1" }, "locus": { "chromosome": "AEMK02000622.1", "start_pos": 36205, "end_pos": 26861, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014370.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014370.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013982.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013982.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q5FW57-1", "protein_name": "Glycine N-acyltransferase-like protein", "gene_name": "Gm4952", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLHLRSSQMLQMLESSLRKYLPESLKVYGTVFHMNQGNPFKLKALVDKWPDFNTVVVRPREQEMGDDLDQHTNTYQIYSKDPKHCLEFLGTPDVINWKQHLQIQSSQSNLNEAIMDLAAGKMVKVKRTQCILYMMPETAKKLVPSLLEDKEYLDHQSGRPRAIDQEMFKLSTLDVTHAPLVDKFWQFGGNERSQRFIGRCIQIFPSSCLLGPEGTPVSWALMDQTGEIRMAGTVPDYRAQGLISHIIYAQTLAMDKRGYPVYNHTEQTNKVIQKMSHTLHHVPMPCDWNQWYCAPL", "length": 296 }, "evidence": [ { "id": "F1RMF6", "url": "https://omabrowser.org/oma/group/F1RMF6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RMF6", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "glycine N-acyltransferase activity", "id": "GO:0047961", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047961", "evidence": [ { "database": "UniProtKB", "id": "F1RMF6", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" } ], "pmid": "" }, { "name": "N-acyltransferase activity", "id": "GO:0016410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016410", "evidence": [ { "database": "UniProtKB", "id": "F1RMF6", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMF6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 293, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMF6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMF6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" }, { "id": "PF08444", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08444" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycine N-acyltransferase C-terminal", "eco_id": "ECO_0000259", "start_pos": 204, "end_pos": 292, "start_aa": "Ile", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RMF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF6" }, { "id": "PF06021", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycine N-acyltransferase N-terminal", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 201, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 266, "end_pos": 268 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGZ7-1", "uniprot_ac": "F1RGZ7", "uniprot_id": "F1RGZ7_PIG", "mass": { "chemical_mass": 27545.0, "monoisotopic_mass": 27545.0 }, "refseq": { "ac": "NP_001335468", "name": "ciliary microtubule associated protein 1A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468" }, "gene_names": [ { "name": "CIMAP1A", "type": "recommended", "evidence": [ { "id": "F1RGZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7" } ] }, { "name": "CIMAP1A", "type": "synonym", "evidence": [ { "id": "NP_001335468", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468" } ] }, { "name": "ODF3", "type": "synonym", "evidence": [ { "id": "NP_001335468", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468" } ] } ], "protein_names": [ { "name": "Ciliary microtubule associated protein 1A", "type": "synonym", "evidence": [ { "id": "F1RGZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7/entry#names_and_taxonomy" } ] }, { "name": "ciliary microtubule associated protein 1A", "type": "synonym", "evidence": [ { "id": "NP_001335468", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468" } ] }, { "name": "outer dense fiber 3", "type": "synonym", "evidence": [ { "id": "NP_001335468", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468" } ] }, { "name": "outer dense fiber of sperm tails 3", "type": "synonym", "evidence": [ { "id": "NP_001335468", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGZ7", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIMAP1A", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7", "locus": { "chromosome": "2", "start_pos": 25149, "end_pos": 21683, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014555", "url": "https://www.ensembl.org/id/ENSSSCG00000014555" } ] } } ], "crossref": [ { "id": "F1RGZ7", "url": "https://alphafold.ebi.ac.uk/entry/F1RGZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014555", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014555", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100499231", "url": "https://www.ncbi.nlm.nih.gov/gene/100499231", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100499231", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100499231", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LMGRTQK", "url": "https://omabrowser.org/oma/group/LMGRTQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGZ7", "url": "https://www.orthodb.org/?gene=F1RGZ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21580", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21580", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21580:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21580:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001335468", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335468", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QD23", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD23-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGZ7", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEEVWVGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILRTGKDLSPAYSILGRYSTKATLTPGPGDYFPEKSTKHVFDAAPSHSISARTKTFRVDSTPGPAAYMLPMVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKTPGPAAYRQTDVQVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTVTKPCAPIVTFGIKHSDYMTPLVVDVE", "length": 254, "header": "tr|F1RGZ7-1|F1RGZ7_PIG Isoform 1 of Ciliary microtubule associated protein 1A OS=Sus scrofa OX=9823 GN=CIMAP1A PE=4 SV=3 CANONICAL=F1RGZ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QD23-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD23/entry", "sequence": { "sequence": "MAEEVWVGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILRTGKDLSPAYSILGRYSTKATLTPGPGDYFPEKSTKHVFDAAPSHSISARTKTFRVDSTPGPAAYMLPMVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKVTVTKPCAPIVTFGIKHSDYMTPLVVDVE", "length": 207, "header": "tr|A0A5G2QD23-1|F1RGZ7_PIG Computationally mapped isoform of Ciliary microtubule associated protein 1A OS=Sus scrofa OX=9823 GN=CIMAP1A PE=4 SV=1 CANONICAL=F1RGZ7-1" }, "locus": { "chromosome": "2", "start_pos": 24904, "end_pos": 22208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070255.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070255.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062025.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062025.1" } ] } }, { "isoform_ac": "F1RGZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7/entry", "sequence": { "sequence": "MAEEVWVGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILRTGKDLSPAYSILGRYSTKATLTPGPGDYFPEKSTKHVFDAAPSHSISARTKTFRVDSTPGPAAYMLPMVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKTPGPAAYRQTDVQVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTVTKPCAPIVTFGIKHSDYMTPLVVDVE", "length": 254, "header": "tr|F1RGZ7-1|F1RGZ7_PIG Isoform 1 of Ciliary microtubule associated protein 1A OS=Sus scrofa OX=9823 GN=CIMAP1A PE=4 SV=3 CANONICAL=F1RGZ7-1" }, "locus": { "chromosome": "2", "start_pos": 24904, "end_pos": 22208, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015905.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015905.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015485.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015485.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 35, "start_aa": "Thr", "end_pos": 35, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr35", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD23", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100499231", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100499231", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZE94-1", "protein_name": "Ciliary microtubule associated protein 1A", "gene_name": "Cimap1a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEVWVGTWRPHRPRGPIMALYTSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILRTGKDLGPAYSILGRYHTKTLLTPGPGDYFPEKSTKHVFDSAPSHSISARTKTFRVDSTPGPAAYMLPVVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKARTPGPAAYRQTEVQVTKFKAPQYTMAARVEPPGDKTMKPGPGAHSPEKVTLNKPCAPTVTFGIKHSDYMTPLVVDVE", "length": 256 }, "evidence": [ { "id": "F1RGZ7", "url": "https://omabrowser.org/oma/group/F1RGZ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q920N1-1", "protein_name": "Ciliary microtubule associated protein 1A", "gene_name": "Cimap1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEEVWMGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFVKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYSVNPKILKTGKDLGPAYSILGRYHTKTLLTPGPGDYFPEKSTKYVFDSAPSHSISARTKTFRVDSTPGPAAYMLPVVMGPHTVGKVSQPSFSIKGRSKLGSFSDDLHKTPGPAAYRQTEVQVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLNKPCAPTVTFGIKHSDYMTPLVVDVE", "length": 254 }, "evidence": [ { "id": "F1RGZ7", "url": "https://omabrowser.org/oma/group/F1RGZ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96PU9-1", "protein_name": "Ciliary microtubule associated protein 1A", "gene_name": "CIMAP1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTEEVWMGTWRPHRPRGPIMALYSSPGPKYLIPPTTGFMKHTPTKLRAPAYSFRGAPMLLAENCSPGPRYNVNPKILRTGKDLGPAYSILGRYQTKTMLTPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLVDVE", "length": 254 }, "evidence": [ { "id": "F1RGZ7", "url": "https://omabrowser.org/oma/group/F1RGZ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "outer dense fiber", "id": "GO:0001520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001520", "evidence": [ { "database": "UniProtKB", "id": "F1RGZ7", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RGZ7", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1RGZ7", "url": "https://www.uniprot.org/uniprotkb/F1RGZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RGZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 254, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RGZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RGZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 35 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGT4-1", "uniprot_ac": "F1RGT4", "uniprot_id": "F1RGT4_PIG", "mass": { "chemical_mass": 17467.0, "monoisotopic_mass": 17467.0 }, "refseq": { "ac": "XP_003354701", "name": "MAPK regulated corepressor interacting protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354701" }, "gene_names": [ { "name": "MCRIP2", "type": "recommended", "evidence": [ { "id": "F1RGT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGT4" } ] }, { "name": "MCRIP2", "type": "synonym", "evidence": [ { "id": "XP_003354701", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354701" } ] } ], "protein_names": [ { "name": "MAPK regulated corepressor interacting protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003354701", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354701" } ] }, { "name": "MAPK regulated corepressor interacting protein 2", "type": "synonym", "evidence": [ { "id": "F1RGT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGT4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGT4", "url": "https://www.uniprot.org/uniprotkb/F1RGT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MCRIP2", "url": "https://www.uniprot.org/uniprotkb/F1RGT4", "locus": { "chromosome": "3", "start_pos": 41123048, "end_pos": 41127917, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007995", "url": "https://www.ensembl.org/id/ENSSSCG00000007995" } ] } } ], "crossref": [ { "id": "F1RGT4", "url": "https://alphafold.ebi.ac.uk/entry/F1RGT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007995", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007995", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525039", "url": "https://www.ncbi.nlm.nih.gov/gene/100525039", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029428", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029428", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525039", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525039", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YESWNQV", "url": "https://omabrowser.org/oma/group/YESWNQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGT4", "url": "https://www.orthodb.org/?gene=F1RGT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF14799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003354701", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354701", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QDV8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGT4", "url": "https://www.uniprot.org/uniprotkb/F1RGT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYTITKGPSKLVAQRRTGPTQQQVENRLGELLKCRHPAPPTPQPPRTQPPGPWPLSSPGPRLVFNRVNGRRPPATSPSLEGSQETYTLAHEENVRFVSEAWQQVEQQLGGGPAGESGPRPVQYVERTPNPRLQNFVPIDLDEWWAQQFLARITNCS", "length": 156, "header": "tr|F1RGT4-1|F1RGT4_PIG Isoform 1 of MAPK regulated corepressor interacting protein 2 OS=Sus scrofa OX=9823 GN=MCRIP2 PE=3 SV=1 CANONICAL=F1RGT4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDV8/entry", "sequence": { "sequence": "MYTITKGPSKLVAQRRTGPTQQQVENRLGELLKCRHPAPPTPQPPRTQPPGPWPLSSAPLNRGGTPSGGGCLSPG", "length": 75, "header": "tr|A0A5G2QDV8-1|F1RGT4_PIG Computationally mapped isoform of MAPK regulated corepressor interacting protein 2 OS=Sus scrofa OX=9823 GN=MCRIP2 PE=3 SV=1 CANONICAL=F1RGT4-1" }, "locus": { "chromosome": "3", "start_pos": 41127791, "end_pos": 41124967, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075749.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075749.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062333.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062333.1" } ] } }, { "isoform_ac": "F1RGT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGT4/entry", "sequence": { "sequence": "MYTITKGPSKLVAQRRTGPTQQQVENRLGELLKCRHPAPPTPQPPRTQPPGPWPLSSPGPRLVFNRVNGRRPPATSPSLEGSQETYTLAHEENVRFVSEAWQQVEQQLGGGPAGESGPRPVQYVERTPNPRLQNFVPIDLDEWWAQQFLARITNCS", "length": 156, "header": "tr|F1RGT4-1|F1RGT4_PIG Isoform 1 of MAPK regulated corepressor interacting protein 2 OS=Sus scrofa OX=9823 GN=MCRIP2 PE=3 SV=1 CANONICAL=F1RGT4-1" }, "locus": { "chromosome": "3", "start_pos": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13743:SF86", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13743:SF86", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02138", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02138", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14844", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14844", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928814", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928814", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZX72", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZX72-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACM2", "url": "https://www.uniprot.org/uniprotkb/A0A287ACM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3D3", "url": "https://www.uniprot.org/uniprotkb/A0A287B3D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE2-1", "database": "UniProtKB", "categories": [ "Protein" ] 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"MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTEILLLGILRIVESDIAMSPSQYLTFPFLHTPNLSNGVSSQKGPGILNSKAMGLLRRARVSRSRKEADSDSFPQQLLSSWHIAPVHLPLLGQNCWPHLSDGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILRDSSFDETENSRPEGAEYINPGERLIEEGCIHMISLGSKALMIQVWADPHSGTFIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYLQQPQGKKNIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGRWELGNLLLFNGAKIGSQEAFYLYACGPNYTSIMPCKYGKPMSDYSRYINKEILQCEQIRELFMTKKDVDIGLLIESLSVVYTTYCPAQYTIYEPVIRLKGQMKTQLSQRPFSSKEAHSILLEPQHLKALRPTECKTIQGILHEIGGTGIFVFLFARVVELSSCEETQALALRVILSLIKYNQQRIHELENCNGLSMIHQVLIKQKCIVGFHILKTLLEGCCGEDIIHINENGEFKLDVESNAIIQDVKLLEELLLDWKIWNKAEQGVWESLLEALEVLIRADHQQQVFNIKQLLKARVVHHFLLTCQVLQEHKEGQLTSMPREVCRSFVKIIAEVLGSPPDLELLTIIFNFLLAVHPPTNTYVCHNPSNFYFSLHIDGKIFQEKVQSIMYLRDSSSGGKFVASPGFMVISPSGFTASLPEAGNTSSSSVPQQMTSMLRSRSLPTFPTSSPQKQPRKLTGSLGCSIDELQNIVDNYVASQPEKQSPPGSSETLKKSREDAFVSSCESAQTVCEMEPVLLAQPAANGVPRAAAELSVVRVDHKDLGAEPRSDDDSPGDESFPRRPDHLKGLASFQRSHSTIASLGLAFPSQNGSAAVGRWPSLVDRNTEDWENFAFSLRYEPKDGRTKSAHSVTEDCLVPICCGLYELLSGVLLILPDIMLEEVLDKLIHADTLLVLVNHPSPAIQQGVIKLLDAFFHRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFFGRRIGLDEEFDLEDVKNMGLFQKWSLIPVLGLIETSLYDHMLLHSALFLLLQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPLNEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVLLGYLQNSKNKRTQNMAIALQLRVLQAAMEFIRTTANHDSENLMSSFQSPASHHAMFQKRKSIAGPRKFPLAQTDSLLMKMRSVASDELPVMMQRRMSQESPVQATETELAQRLQRLIVLAVNRIIYQEFNPDIIDILSTPENAAQSKTSVSPTEFSGENIRHEQPSTCNPFQKEVFTYLVEGFKVSTGSGKISGSRQQWAKILWSCKETFRMQFGRLLVHILSPAHPSQERKQIFEIVREPNHQEILRDCLSPSLQHGAKLVLYLSELIHNHHSELTEDELDTAELLMNALKLCGHKCSPPSALTKSDLIKVIKEEQKKYETEESVNKANWQKTVNNNQQSLFQRLDSKSKDISKIAADITQAVSLSQGTERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDTVESSSLQGELEPASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSILTNNLPNLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREPVKEIPYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNNTDIQWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG", "length": 3797, "header": "tr|F1RGY4-1|F1RGY4_PIG Isoform 1 of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=5 CANONICAL=F1RGY4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZX72-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX72/entry", "sequence": { "sequence": "MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTEILLLGILRIVESDIAMSPSQYLTFPFLHTPNLSNGVSSQKGPGILNSKAMGLLRRARVSRSRKEADSDSFPQQLLSSWHIAPVHLPLLGQNCWPHLSDGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILRDSSFDETENSRPEGAEYINPGERLIEEGCIHMISLGSKALMIQVWADPHSGTFIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYLQQPQGKKNIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGRWELGNLLLFNGAKIGSQEAFYLYACGPNYTSIMPCKYGKPMSDYSRYINKEILQCEQIRELFMTKKDVDIGLLIVVELSSCEETQALALRVILSLIKYNQQRIHELENCNGLSMIHQVLIKQKCIVGFHILKTLLEGCCGEDIIHINENGEFKLDVESNAIIQDVKLLEELLLDWKIWNKAEQGVWESLLEALEVLIRADHQQQVFNIKQLLKARVVHHFLLTCQVLQEHKEGQLTSMPREVCRSFVKIIAEVLGSPPDLELLTIIFNFLLAVHPPTNTYVCHNPSNFYFSLHIDGKIFQEKVQSIMYLRDSSSGGKFVASPGFMVISPSGFTASLPEAGNTSSSSVPQQMTSMLRSRSLPTFPTSSPQKQPRKLTGSLGCSIDELQNIVDNYVASQPEKQSPPGSSETLKKSREDAFVSSCESAQTVCEMEPVLLAQPAANGVPRAAAELSVVRVDHKDLGAEPRSDDDSPGDESFPRRPDHLKGLASFQRSHSTIASLGLAFPSQNGSAAVGRWPSLVDRNTEDWENFAFSLRYEPKDGRTKSAHSVTEDCLVPICCGLYELLSGVLLILPDIMLEEVLDKLIHADTLLVLVNHPSPAIQQGVIKLLDAFFHRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFFGRRIGLDEEFDLEDVKNMGLFQKWSLIPVLGLIETSLYDHMLLHSALFLLLQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPLNEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVLLGYLQNSKNKRTQNMAIALQLRVLQAAMEFIRTTANHDSENLMSSFQSPASHHAMFQKRKSIAGPRKFPLAQTDSLLMKMRSVASDELPVMMQRRMSQESPVQATETELAQRLQRLIVLAVNRIIYQEFNPDIIDILSTPENAAQSKTSVSPTEFSGENIRHEQPSTCNPFQKEVFTYLVEGFKVSTGSGKISGSRQQWAKILWSCKETFRMQFGRLLVHILSPAHPSQERKQIFEIVREPNHQEILRDCLSPSLQHGAKLVLYLSELIHNHHSELTEDELDTAELLMNALKLCGHKCSPPSALTKSDLIKVIKEEQKKYETEESVNKANWQKTVNNNQQSLFQRLDSKSKDISKIAADITQAVSLSQGTERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDTVESSSLQGELEPASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSILTNNLPNLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREPVKEIPYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNNTDIQWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG", "length": 3715, "header": "tr|A0A286ZX72-1|A0A286ZX72_PIG Computationally mapped isoform of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=1 CANONICAL=F1RGY4-1" }, "locus": { "chromosome": "14", "start_pos": 55632092, "end_pos": 55480042, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033787.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033787.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036112.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036112.1" } ] } }, { "isoform_ac": "A0A287ACM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACM2/entry", "sequence": { "sequence": "MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTEILLLGILRIVESDIAMSPSQYLTFPFLHTPNLSNGVSSQKGPGILNSKAMGLLRRARVSRSRKEADSDSFPQQLLSSWHIAPVHLPLLGQNCWPHLSDGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILRDSSFDETENSRPEGAEYINPGERLIEEGCIHMISLGSKALMIQVWADPHSGTFIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYLQQPQGKKNIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGRWELGNLLLFNGAKIGSQEAFYLYACGPNYTSIMPCKYGKPMSDYSRYINKEILQCEQIRELFMTKKDVDIGLLIESLSVVYTTYCPAQYTIYEPVIRLKGQMKTQLSQRPFSSKEAHSILLEPQHLKALRPTECKTIQGILHEIGGTGIFVFLFARVVELSSCEETQALALRVILSLIKYNQQRIHELENCNGLSMIHQVLIKQKCIVGFHILKTLLEGCCGEDIIHINENGEFKLDVESNAIIQDVKLLEELLLDWKIWNKAEQGVWESLLEALEVLIRADHQQQVFNIKQLLKARVVHHFLLTCQVLQEHKEGQLTSMPREVCRSFVKIIAEVLGSPPDLELLTIIFNFLLAVHPPTNTYVCHNPSNFYFSLHIDGKIFQEKVQSIMYLRDSSSGGKFVASPGFMVISPSGFTASLPEAGNTSSSSVPQQMTSMLRSRSLPTFPTSSPQKQPRKLTGSLGCSIDELQNIVDNYVASQPEKQSPPGSSETLKKSREDAFVSSCESAQTVCEMEPVLLAQPAANGVPRAAAELSVVRVDHKDLGAEPRSDDDSPGDESFPRRPDHLKGLASFQRSHSTIASLGLAFPSQNGSAAVGRWPSLVDRNTEDWENFAFSLRYEPKDGRTKSAHSVTEDCLVPICCGLYELLSGVLLILPDIMLEEVLDKLIHADTLLVLVNHPSPAIQQGVIKLLDAFFHRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFFGRRIGLDEEFDLEDVKNMGLFQKWSLIPVLGLIETSLYDHMLLHSALFLLLQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPLNEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVLLGYLQNSKNKRTQNMAIALQLRVLQAAMEFIRTTANHDSENLMSSFQSPASHHAMFQKRKSIAGSIPMKGSIIPHLPRRHFGSYGQLPMSFSFSPLNHDPGPSFSPGSMTYVVPLGTGPRKFPLAQTDSLLMKMRSVASDELPVMMQRRMSQESPVQATETELAQRLQRLIVLAVNRIIYQEFNPDIIDILSTPENAAQSKTSVSPTEFSGENIRHEQPSTCNPFQKEVFTYLVEGFKVSTGSGKISGSRQQWAKILWSCKETFRMQFGRLLVHILSPAHPSQERKQIFEIVREPNHQEILRDCLSPSLQHGAKLVLYLSELIHNHHSELTEDELDTAELLMNALKLCGHKCSPPSALTKSDLIKVIKEEQKKYETEESVNKANWQKTVNNNQQSLFQRLDSKSKDISKIAADITQAVSLSQGTERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDTVESSSLQGELEPASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSILTNNLPNLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREPVKEIPYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNNTDIQWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG", "length": 3851, "header": "tr|A0A287ACM2-1|A0A287ACM2_PIG Computationally mapped isoform of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=1 CANONICAL=F1RGY4-1" }, "locus": { "chromosome": "14", "start_pos": 55632092, "end_pos": 55480042, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050051.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050051.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041721.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041721.1" } ] } }, { "isoform_ac": "A0A287B3D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3D3/entry", "sequence": { "sequence": "MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTEILLLGILRIVESDIAMSPSQYLTFPFLHTPNLSNGVSSQKGPGILNSKAMGLLRRARVSRSRKEADSDSFPQQLLSSWHIAPVHLPLLGQNCWPHLSDGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILRDSSFDETENSRPEGAEYINPGERLIEEGCIHMISLGSKALMIQVWADPHSGTFIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYLQQPQGKKNIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGRWELGNLLLFNGAKIGSQEAFYLYACGPNYTSIMPCKYGKPMSDYSRYINKEILQCEQIRELFMTKKDVDIGLLIESLSVVYTTYCPAQYTIYEPVIRLKGQMKTQLSQRPFSSKEAHSILLEPQHLKALRPTECKTIQGILHEIGGTGIFVFLFARVVELSSCEETQALALRVILSLIKYNQQRIHELENCNGLSMIHQVLIKQKCIVGFHILKTLLEGCCGEDIIHINENGEFKLDVESNAIIQDVKLLEELLLDWKIWNKAEQGVWESLLEALEVLIRADHQQQVFNIKQLLKARVVHHFLLTCQVLQEHKEGQLTSMPREVCRSFVKIIAEVLGSPPDLELLTIIFNFLLAVHPPTNTYVCHNPSNFYFSLHIDGKIFQEKVQSIMYLRDSSSGGKFVASPGFMVISPSGFTASLPEGNTSSSSVPQQMTSMLRSRSLPTFPTSSPQKQPRKLTGSLGCSIDELQNIVDNYVASQPEKQSPPGSSETLKKSREDAFVSSCESAQTVCEMEPVLLAQPAANGVPRAAAELSVVRVDHKDLGAEPRSDDDSPGDESFPRRPDHLKGLASFQRSHSTIASLGLAFPSQNGSAAVGRWPSLVDRNTEDWENFAFSLRYEPKDGRTKSAHSVTEDCLVPICCGLYELLSGVLLILPDIMLEEVLDKLIHADTLLVLVNHPSPAIQQGVIKLLDAFFHRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFFGRRIGLDEEFDLEDVKNMGLFQKWSLIPVLGLIETSLYDHMLLHSALFLLLQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPLNEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVLLGYLQNSKNKRTQNMAIALQLRVLQAAMEFIRTTANHDSENLMSSFQSPASHHAMFQKRKSIAGPRKFPLAQTDSLLMKMRSVASDELPVMMQRRMSQESPVQATETELAQRLQRLIVLAVNRIIYQEFNPDIIDILSTPENAAQSKTSVSPTEFSGENIRHEQPSTCNPFQKEVFTYLVEGFKVSTGSGKISGSRQQWAKILWSCKETFRMQFGRLLVHILSPAHPSQERKQIFEIVREPNHQEILRDCLSPSLQHGAKLVLYLSELIHNHHSELTEDELDTAELLMNALKLCGHKCSPPSALTKSDLIKVIKEEQKKYETEESVNKANWQKTVNNNQQSLFQRLDSKSKDISKIAADITQAVSLSQGTERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDTVESSVRDDVYHSILTNNLPNLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREPVKEIPYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNNTDIQWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG", "length": 3745, "header": "tr|A0A287B3D3-1|A0A287B3D3_PIG Computationally mapped isoform of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=2 CANONICAL=F1RGY4-1" }, "locus": { "chromosome": "14", "start_pos": 55632092, "end_pos": 55480042, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050254.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050254.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050609.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050609.2" } ] } }, { "isoform_ac": "A0A5G2QGE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE2/entry", "sequence": { "sequence": "QQQEFLLWLSGSVMSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTEILLLGILRIVESDIAMSPSQYLTFPFLHTPNLSNGVSSQKGPGILNSKAMGLLRRARVSRSRKEADSDSFPQQLLSSWHIAPVHLPLLGQNCWPHLSDGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILRDSSFDETENSRPEGAEYINPGERLIEEGCIHMISLGSKALMIQVWADPHSGTFIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYLQQPQGKKNIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGRWELGNLLLFNGAKIGSQEAFYLYACGPNYTSIMPCKYGKPMSDYSRYINKEILQCEQIRELFMTKKDVDIGLLIESLSVVYTTYCPAQYTIYEPVIRLKGQMKTQLSQRPFSSKEAHSILLEPQHLKALRPTECKTIQGILHEIGGTGIFVFLFARVVELSSCEETQALALRVILSLIKYNQQRIHELENCNGLSMIHQVLIKQKCIVGFHILKTLLEGCCGEDIIHINENGEFKLDVESNAIIQDVKLLEELLLDWKIWNKAEQGVWESLLEALEVLIRADHQQQVFNIKQLLKARVVHHFLLTCQVLQEHKEGQLTSMPREVCRSFVKIIAEVLGSPPDLELLTIIFNFLLAVHPPTNTYVCHNPSNFYFSLHIDGKIFQEKVQSIMYLRDSSSGGKFVASPGFMVISPSGFTASLPEAGNTSSSSVPQQMTSMLRSRSLPTFPTSSPQKQPRKLTGSLGCSIDELQNIVDNYVASQPEKQSPPGSSETLKKSREDAFVSSCESAQTVCEMEPVLLAQPAANGVPRAAAELSVVRVDHKDLGAEPRSDDDSPGDESFPRRPDHLKGLASFQRSHSTIASLGLAFPSQNGSAAVGRWPSLVDRNTEDWENFAFSLRYEPKDGRTKSAHSVTEDCLVPICCGLYELLSGVLLILPDIMLEEVLDKLIHADTLLVLVNHPSPAIQQGVIKLLDAFFHRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFFGRRIGLDEEFDLEDVKNMGLFQKWSLIPVLGLIETSLYDHMLLHSALFLLLQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPLNEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVLLGYLQNSKNKRTQNMAIALQLRVLQAAMEFIRTTANHDSENLMSSFQSPASHHAMFQKRKSIAGSIPMKGSIIPHLPRRHFGSYGQLPMSFSFSPLNHDPGPSFSPGSMTYVVPLGTGPRKFPLAQTDSLLMKMRSVASDELPVMMQRRMSQESPVQATETELAQRLQRLIVLAVNRIIYQEFNPDIIDILSTPENAAQSKTSVSPTEFSGENIRHEQPSTCNPFQKEVFTYLVEGFKVSTGSGKISGSRQQWAKILWSCKETFRMQFGRLLVHILSPAHPSQERKQIFEIVREPNHQEILRDCLSPSLQHGAKLVLYLSELIHNHHSELTEDELDTAELLMNALKLCGHKCSPPSALTKSDLIKVIKEEQKKYETEESVNKANWQKTVNNNQQSLFQRLDSKSKDISKIAADITQAVSLSQGTERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDTVESSSLQGELEPASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSILTNNLPNLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREPVKEIPYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNNTDIQWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG", "length": 3864, "header": "tr|A0A5G2QGE2-1|F1RGY4_PIG Computationally mapped isoform of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=1 CANONICAL=F1RGY4-1" }, "locus": { "chromosome": "14", "start_pos": 55632092, "end_pos": 55479697, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074545.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074545.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063359.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063359.1" } ] } }, { "isoform_ac": "A0A5G2RHD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHD9/entry", "sequence": { "sequence": "MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTRTADQKVQST", "length": 1379, "header": "tr|A0A5G2RHD9-1|F1RGY4_PIG Computationally mapped isoform of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=1 CANONICAL=F1RGY4-1" }, "locus": { "chromosome": "14", "start_pos": 55518084, "end_pos": 55480042, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075392.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075392.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070746.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070746.1" } ] } }, { "isoform_ac": "F1RGY4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGY4/entry", "sequence": { "sequence": "MSTDSNSLAREFLTDVNRLCNAVVQRVEAREEEEEETHMAALGQYLVHGRGFLLLTRLNSIIDQALTCREELLTLLLSLLPLVWKIPVQEEKATDFNLPFSADIILTKEKNSTSQRSTQEKLYLEGSAPAGQVSAKVNVFRRSRRQRKTTHRYSIRDARKTQLSTSDSEANSDEKSIAVNKHRRSHLLQHFVTQPPKGDHLPAELDHLSTKEQAPPDSMALENSREMIPRPESNTDILSEPAALSVISHMNNSPFDLCHVLLSLLEKVCKFDITLNHNSALAASVVPTLTEFLAGFGDCCNLSDSLESQMVSAGWTEEPVALIQRMLFRTVLHLMSVDVSAAEMMPESLRKNLTELLRAALKIRTCLEKQPDPFAPRQKKTLQEVQEDFVFSKYRHRALLLPELLEGVLQILTCCLQSAASNPFFFSQAMDLVQEFIQHHGFHLFETAVLQMEWLALRDGVPPEASEHLKALINSVMKIMSTVKKVKSEQLHHSVCTRKRHRRCEYSHFMHHHRDLSGLLVSAFKNQVSKNPFEETADGDVYYPERCCCIAVCAHQCFRLLQQASLSSTCVQILSGVQNIGICCCMDPKSVIVPLLHAFKLPALKNFQQHILNILNKLILDQLGGAEISQQIKKAACNICTIDSDQLAKLEETLQGNSHDADPSSSLSSPSYRSQGILPSNGSEDFLWKWDALEAYQNFVFEEDRLHSVQIANHICGLIQKGNVVVQWKLYNYIFNPVLQRGVQLAHHCQQLSVTSAQTHVCNLHNQCLPQEVLQIYLKTLPTLLKSRVIRDLFLSCNGVNQIIELNYLDGIRNHSLKAFETLIVSLGEQQKDSVPGIDGTDLEQKELSSLTVGTSHNQQAYSDSQSLSKFYARLRDAYPRKQKSVTRDVHINTINLFLCVAFLCVSKEAESDRESANDSEDTSGYDSTASEPLRLMLPCLSLESLVLPSPEQMHQAADIWLMCRWIYMLSPVFQKQFYRLGGLQVCHKLIFMIIQELFRGPEEEQGRKEGDINVYESQNLNKTSPSAITVKENLLSLTIESDPTPSELVSLEKSADSVGKLESPCISSVNVQQTPAAEAAPEEAKVFMHRESEASLQSIRLLEALLAICLHGTRASQQKMELELPHQNLSVENILLEVRDQLSKSKVIETELAKPLFDALLRVALGNHSADFDHSDAMTEKSYQPEEELSSQPGDFSEEAEDSQCCSFKLLVEEEGYEADSESNPEDSETRDDGVDLKPKAESFSASSSPHDLLENLTQGEIIYPEICMLELSLLSTGKAKLDVLAHVFESFLKIIKQKEKNIFLLMQQGTVKNLLGGFLSILTQADSDFQACQRVLVDLLVSLMSSRTCSEELTLLLRIFLEKSPCTEILLLGILRIVESDIAMSPSQYLTFPFLHTPNLSNGVSSQKGPGILNSKAMGLLRRARVSRSRKEADSDSFPQQLLSSWHIAPVHLPLLGQNCWPHLSDGFSVSLWFNVECIHEAESTTEKGKKIKKRNKSLILRDSSFDETENSRPEGAEYINPGERLIEEGCIHMISLGSKALMIQVWADPHSGTFIFRVCMDSNDDMKAVLLAQVESQENIFLPSKWQHLVLTYLQQPQGKKNIHGKISIWVSGQRKPDVTLDFMLPRKTSLSSDSNKTFCMIGHCLSSQEEFLQLAGRWELGNLLLFNGAKIGSQEAFYLYACGPNYTSIMPCKYGKPMSDYSRYINKEILQCEQIRELFMTKKDVDIGLLIESLSVVYTTYCPAQYTIYEPVIRLKGQMKTQLSQRPFSSKEAHSILLEPQHLKALRPTECKTIQGILHEIGGTGIFVFLFARVVELSSCEETQALALRVILSLIKYNQQRIHELENCNGLSMIHQVLIKQKCIVGFHILKTLLEGCCGEDIIHINENGEFKLDVESNAIIQDVKLLEELLLDWKIWNKAEQGVWESLLEALEVLIRADHQQQVFNIKQLLKARVVHHFLLTCQVLQEHKEGQLTSMPREVCRSFVKIIAEVLGSPPDLELLTIIFNFLLAVHPPTNTYVCHNPSNFYFSLHIDGKIFQEKVQSIMYLRDSSSGGKFVASPGFMVISPSGFTASLPEAGNTSSSSVPQQMTSMLRSRSLPTFPTSSPQKQPRKLTGSLGCSIDELQNIVDNYVASQPEKQSPPGSSETLKKSREDAFVSSCESAQTVCEMEPVLLAQPAANGVPRAAAELSVVRVDHKDLGAEPRSDDDSPGDESFPRRPDHLKGLASFQRSHSTIASLGLAFPSQNGSAAVGRWPSLVDRNTEDWENFAFSLRYEPKDGRTKSAHSVTEDCLVPICCGLYELLSGVLLILPDIMLEEVLDKLIHADTLLVLVNHPSPAIQQGVIKLLDAFFHRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFFGRRIGLDEEFDLEDVKNMGLFQKWSLIPVLGLIETSLYDHMLLHSALFLLLQILNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPLNEYKLLACDIQQLFIAVTIHACSSSGSQYFRVIEDLIVLLGYLQNSKNKRTQNMAIALQLRVLQAAMEFIRTTANHDSENLMSSFQSPASHHAMFQKRKSIAGPRKFPLAQTDSLLMKMRSVASDELPVMMQRRMSQESPVQATETELAQRLQRLIVLAVNRIIYQEFNPDIIDILSTPENAAQSKTSVSPTEFSGENIRHEQPSTCNPFQKEVFTYLVEGFKVSTGSGKISGSRQQWAKILWSCKETFRMQFGRLLVHILSPAHPSQERKQIFEIVREPNHQEILRDCLSPSLQHGAKLVLYLSELIHNHHSELTEDELDTAELLMNALKLCGHKCSPPSALTKSDLIKVIKEEQKKYETEESVNKANWQKTVNNNQQSLFQRLDSKSKDISKIAADITQAVSLSQGTERKKVIQHIRGMYKVDLSASRHWQELIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLLRDRQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDTVESSSLQGELEPASFSWTYEEIKEVHKRWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSILTNNLPNLLEYGNITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVSETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREPVKEIPYPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNNTDIQWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCDGHHLYTANSDGTVIAWCRKDQQRLKQPMFYSFLSSYAAG", "length": 3797, "header": "tr|F1RGY4-1|F1RGY4_PIG Isoform 1 of Lysosomal-trafficking regulator OS=Sus scrofa OX=9823 GN=LYST PE=1 SV=5 CANONICAL=F1RGY4-1" }, "locus": { "chromosome": "14", "start_pos": 55632092, "end_pos": 55480042, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011115.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011115.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010827.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010827.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1045, "start_aa": "Thr", "end_pos": 1045, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1045", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGE2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGE2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100049676", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100049676", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "lysosome organization", "id": "GO:0007040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007040", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "pigmentation", "id": "GO:0043473", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043473", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "endosome to lysosome transport via multivesicular body sorting pathway", "id": "GO:0032510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032510", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "natural killer cell mediated cytotoxicity", "id": "GO:0042267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042267", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "defense response to other organism", "id": "GO:0098542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098542", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" }, { "name": "lymphocyte mediated immunity", "id": "GO:0002449", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002449", "evidence": [ { "database": "UniProtKB", "id": "F1RGY4", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1022, "end_pos": 1024, "annotation": "n_glycosylation_sequon" }, { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1129, "end_pos": 1131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1168, "end_pos": 1170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1257, "end_pos": 1259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1401, "end_pos": 1403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1498, "end_pos": 1500, "annotation": 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681, "end_pos": 683, "annotation": "n_glycosylation_sequon" }, { "start_pos": 814, "end_pos": 816, "annotation": "n_glycosylation_sequon" }, { "start_pos": 918, "end_pos": 920, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" }, { "id": "PS50197", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50197" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEACH", "eco_id": "ECO_0000259", "start_pos": 3116, "end_pos": 3418, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RGY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGY4" }, { "id": "PS51783", "database": "PROSITE", "url": 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Computationally mapped isoform of Membrane metalloendopeptidase like 1 OS=Sus scrofa OX=9823 GN=MMEL1 PE=1 SV=2 CANONICAL=F1RJC1-1" }, "locus": { "chromosome": "6", "start_pos": 64470766, "end_pos": 64436820, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091290.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091290.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063907.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063907.2" } ] } }, { "isoform_ac": "A0A5G2QU88-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU88/entry", "sequence": { "sequence": 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"MGKPENPVGTVQIAGHSGQKHRGFLEGALLLLLILVTGALVTLGLLYAHSRGKQLPLFSSRLCFSKEEKTVVKRAPRDLKAPEDAVELCTSPGCVMAAARILQNMDPSKEPCDDFYQYACGGWLRRHVIPETNSRYSVFDILREELEIILKGVLENSTAKDRPAMQKARTLYRSCMNESVIEKRDSKPLLDILEVVGGWPVAMDKWSENAGPGWELERQLAVMNAQFNRRVLIDLFIWNDDQNSSRHIIYIDQPTLGMPSREHYFSAGANQKVREAYLQFMVSVATMLRADMSLPEDSSLVQEDMAQVLELETQLANATAPQEERHDVTALYHRMDLEELQDKFGLKGFNWTLFIQAVLSSVNTTLLPDEQVVVYGIPYLQHLEDIIDVYSPRTMQNYLVWRLVLDRISSLSQRFKDARASYRKALYGTTVEEVRWRECVSYVNSNMESAVGSLYVTEAFPGDSKSAVRELIGKVRAVFVETLDELSWMDESSRKKAREKAMSIREQIGYPDYILEEKDKHLDEEYSSLNFSEDLYFENGLQNLKAGAQRSLKKLREKVDQNLWIIGAAVVNAFYSPNRNQIVFPAGILQPPFFSKEQPQALNFGGIGMVIGHEITHGFDDNGRNFDKDGNMLDWWSNFSAQHFQEQSECMVHQYGNYSWDLADDQNVNGFSTLGENIADNGGVRQAYKAYLKWLSEGGKDRQLPGLELTHEQLFFVNYAQVWCGSYRPEFAVQSIKTDVHSPLKYRVLGSLQNLAAFADAFHCARGTPMHPKVRCRVW", "length": 779, "header": "tr|F1RJC1-1|F1RJC1_PIG Isoform 1 of Membrane metalloendopeptidase like 1 OS=Sus scrofa OX=9823 GN=MMEL1 PE=1 SV=4 CANONICAL=F1RJC1-1" }, "locus": { "chromosome": "6", "start_pos": 64470592, "end_pos": 64436820, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003725.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003725.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003639.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003639.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24408", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24408:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24408:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QIM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKM7-1", "url": "https://www.uniprot.org/uniprotkb/F1RKM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMPAIWTSSQKCLGLASEEHGSSREGSVSFRDVAVDFSREEWQQLDLDQKNLYRDVMLETYSHLLSVGYQVPDPEVLKLEQGKDPWALQGESPHQSCLEELWQISDQIESYQQKENKYVRDVAFIKKILTIKRDYDCKDIKKIIQVSQNIPSPKKPHQCDLFGNALKHNLDLHSHNRNSGSKNINKITEYGKISSYTEHEYTPTREKFWDHNQCGKILSYKQAPSQHQKIYTGEKSYECAEFGNIFTQKSQLKVHLKVHTGEKLYVCIDCGKAFVQKPEFITHQRTHTREKPYKCSECGKAFFQVSSLFRHQRIHTGEKLYECSECGKGFSYNSDLSIHQKIHTGERHHECSDCGKAFTQKSTLKMHQKIHTGERSYICIDCGQAFIQKTHLIAHRRIHTGEKPYECSNCGKSFISKSQLQVHQRTHTRMKTFLDNEYGTVFTNSFNLNTHRKVQIREKSSICTECGKAFTYRSELIIHQRIHTGEKPYECSDCGKAFTQKSALTVHQRIHTGEKAYVCMKCGLAFIQKAHLIAHQIIHTGEKPYNCGHCGKSFTSKSQLHVHKRIHTGEKPYMCTKCGKAFTNRSNLITHQKTHTGEKSYMCPKCGKAFTQRSDLITHQRIHTGEKPYECSTCGKAFTQKSHLNIHQKIHTGERQYECHECGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYKCNDCGKSFTSKSQLLVHQPIHTGEKPYVCAVCGKAFSGRSNLSKHQKTHTGEKPYICSECGKTFRQKSELIIHHRIHTGEKPYECSDCGKSFTKKSQLQVHQRIHTGEKPYVCSECGKAFTDRSNLNKHQTTHTGDKPYKCVVCGKGFVQKSVLSVHQSIHI", "length": 877, "header": "tr|F1RKM7-1|F1RKM7_PIG Isoform 1 of Zinc finger protein 585A OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1RKM7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM0/entry", "sequence": { "sequence": "MEAHVRDVAVDFSREEWQQLDLDQKNLYRDVMLETYSHLLSVGYQVPDPEVLKLEQGKDPWALQGESPHQSCLEELWQISDQIESYQQKENKYVRDVAFIKKILTIKRDYDCKDIKKIIQVSQNIPSPKKPHQCDLFGNALKHNLDLHSHNRNSGSKNINKITEYGKISSYTEHEYTPTREKFWDHNQCGKILSYKQAPSQHQKIYTGEKSYECAEFGNIFTQKSQLKVHLKVHTGEKLYVCIDCGKAFVQKPEFITHQRTHTREKPYKCSECGKAFFQVSSLFRHQRIHTGEKLYECSECGKGFSYNSDLSIHQKIHTGERHHECSDCGKAFTQKSTLKMHQKIHTGERSYICIDCGQAFIQKTHLIAHRRIHTGEKPYECSNCGKSFISKSQLQVHQRTHTRMKTFLDNEYGTVFTNSFNLNTHRKVQIREKSSICTECGKAFTYRSELIIHQRIHTGEKPYECSDCGKAFTQKSALTVHQRIHTGEKAYVCMKCGLAFIQKAHLIAHQIIHTGEKPYNCGHCGKSFTSKSQLHVHKRIHTGEKPYMCTKCGKAFTNRSNLITHQKTHTGEKSYMCPKCGKAFTQRSDLITHQRIHTGEKPYECSTCGKAFTQKSHLNIHQKIHTGERQYECHECGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYKCNDCGKSFTSKSQLLVHQPIHTGEKPYVCAVCGKAFSGRSNLSKHQKTHTGEKPYICSECGKTFRQKSELIIHHRIHTGEKPYECSDCGKSFTKKSQLQVHQRIHTGEKPYVCSECGKAFTDRSNLNKHQTTHTGDKPYKCVVCGKGFVQKSVLSVHQSIHI", "length": 851, "header": "tr|A0A5G2QIM0-1|F1RKM7_PIG Computationally mapped isoform of Zinc finger protein 585A OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1RKM7-1" }, "locus": { "chromosome": "6", "start_pos": 46224187, "end_pos": 46209673, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074868.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074868.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061869.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061869.2" } ] } }, { "isoform_ac": "F1RKM7-1", "url": "https://www.uniprot.org/uniprotkb/F1RKM7/entry", "sequence": { "sequence": "MTMPAIWTSSQKCLGLASEEHGSSREGSVSFRDVAVDFSREEWQQLDLDQKNLYRDVMLETYSHLLSVGYQVPDPEVLKLEQGKDPWALQGESPHQSCLEELWQISDQIESYQQKENKYVRDVAFIKKILTIKRDYDCKDIKKIIQVSQNIPSPKKPHQCDLFGNALKHNLDLHSHNRNSGSKNINKITEYGKISSYTEHEYTPTREKFWDHNQCGKILSYKQAPSQHQKIYTGEKSYECAEFGNIFTQKSQLKVHLKVHTGEKLYVCIDCGKAFVQKPEFITHQRTHTREKPYKCSECGKAFFQVSSLFRHQRIHTGEKLYECSECGKGFSYNSDLSIHQKIHTGERHHECSDCGKAFTQKSTLKMHQKIHTGERSYICIDCGQAFIQKTHLIAHRRIHTGEKPYECSNCGKSFISKSQLQVHQRTHTRMKTFLDNEYGTVFTNSFNLNTHRKVQIREKSSICTECGKAFTYRSELIIHQRIHTGEKPYECSDCGKAFTQKSALTVHQRIHTGEKAYVCMKCGLAFIQKAHLIAHQIIHTGEKPYNCGHCGKSFTSKSQLHVHKRIHTGEKPYMCTKCGKAFTNRSNLITHQKTHTGEKSYMCPKCGKAFTQRSDLITHQRIHTGEKPYECSTCGKAFTQKSHLNIHQKIHTGERQYECHECGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYKCNDCGKSFTSKSQLLVHQPIHTGEKPYVCAVCGKAFSGRSNLSKHQKTHTGEKPYICSECGKTFRQKSELIIHHRIHTGEKPYECSDCGKSFTKKSQLQVHQRIHTGEKPYVCSECGKAFTDRSNLNKHQTTHTGDKPYKCVVCGKGFVQKSVLSVHQSIHI", "length": 877, "header": "tr|F1RKM7-1|F1RKM7_PIG Isoform 1 of Zinc finger protein 585A OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1RKM7-1" }, "locus": { "chromosome": "6", "start_pos": 46224248, "end_pos": 46209673, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003260.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003260.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003179.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003179.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIM0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512052", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512052", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZQ59-1", "protein_name": "Zinc finger protein 585B", "gene_name": "Zfp27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTDWTSTLEATSLAPEDPGSSSEGLVSFMDVTIDFSREEWQHLDPAQRSLYRDVMQETYSHLRSVELQQTGDHYQQIEPKSASDMVFIKKTVDAESRHEYAGVRTVIHVNSYTVPSPTRLRYRDPLASDPEHNLNLQTRHESNEPKRGQKITEYGKISSYSNTNHTLTGEKLQDHGQCERALSYEQVPCRYQKSYECAEFGKTLTQKPQRTVHVKSTRDRLYVCLECGKACSQKSEFLTHQKTHTREKRYPCGNCGKSFFQASSLFRHQRIHTGEKLYECGHCGKGFSYNSDLRTHQKIHTGERHYSCADCGKAFAQKSTLKIHQKIHTGDRAYICIECGQAFIQKTHLVSHRRIHTGEKPHQCDSCGKSFVSKSQLQVHQRIHARVRPCVTPDHGKTFSISPSFTRKKVPVREKSSACTECGKAFTYRSELIIHQRTHTGEKPYQCGDCGKAFTQKSALTVHRRIHTGEKSYACVKCGLAFVQKAHLVAHQVIHTGEKPYTCGHCGKLFTSKSQLHVHKRIHTGEKPYVCSKCGKAFANRSNLITHQRIHTGEKSYVCSRCGKAFTQRSDLVTHQRIHTGEKPYGCSICGKAFTQKSHLSIHQTIHTGERQYKCLDCGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYRCNDCGKPFTSKSQLLVHQPIHTGQKPHVCAECGKTFSGRSNLSKHQKTHTGEKPYMCSECGKTFRQKSELITHHRIHTGEKPYDCSGCGKSFTKKSQLQVHQRIHTGERPYTCAECGKAFTDRSNMNKHQTIHTREKPHKCVVCGEGFVQKSALSAHQSLHTQAV", "length": 836 }, "evidence": [ { "id": "F1RKM7", "url": "https://omabrowser.org/oma/group/F1RKM7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P10077-1", "protein_name": "Zinc finger protein 27", "gene_name": "Zfp27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDVTIDFSREEWQHLDPAQRSLYRDVVQETYSHLRSVEELQQIGDQKKTYQQIGHKSASDMVFITKTLGAESCHDYSGVRKVIHVNSYIVLPPKRPRHWDPPEDEPKHSSDLQTHDESNGLKRTKRITEYGKISSCINTEHILTGEKLPDHNQCGKVLGYKQIPCQYQKIHTGEKSYECAEFGKIFTQKSQLRVHVTSPTGEKLYVCVECGKACSQTSEFLTHQKTHTREKPYKCGDCGKSFFQVSSLFRHRRIHTGEKLYDCSHCGKGFSYNSDLRIHQKIHTGEKRHGCVDCGKAFTQKSTLRMHQKIHTGERAYVCIECGQAFIQKTHLVAHRRIHTGEKPYACDGCGKAFLSKSQLLVHQRIHSRVRPCVSLDRAKPFSSAPNLLPRKKVQMREKSSICAECGKAFTYRSELIIHQRTHTGEKPYQCGDCGKAFTQKSALTVHRRIHTGEKSYVCVKCGLAFVQRAHLDAHQVIHTGEKPYQCGHCGKFFTSKSQLHVHKRIHTGEKPYVCSNCGKAFANRSNLITHQKTHTGEKAYVCARCGKAFTQRSDLVTHQRIHTGEKPYGCSTCGKAFTQKSHLSIHEKIHTGERQYGCRDCGKAFNQKSILIVHQKIHTGEKPHVCAECGRAFIRKSNFITHQRIHTGEKPYGCTDCGKSFTSKSQLLVHRPIHTGEKPYVCAECGKAFSGRSNLSKHQKTHTGEKPYACSECGKSFRQKSELITHHRIHTGEKPYDCGDCGKSFTKKSQLQVHQRIHTGEKPYRCAECGKAFTDRSNLNKHQTTHTGEKPYKCVVCGKGFVQKSVLSIHENVHTSAV", "length": 819 }, "evidence": [ { "id": "F1RKM7", "url": "https://omabrowser.org/oma/group/F1RKM7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P3V2-1", "protein_name": "Zinc finger protein 585A", "gene_name": "ZNF585A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPANWTSPQKSSALAPEDHGSSYEGSVSFRDVAIDFSREEWRHLDPSQRNLYRDVMLETYSHLLSVGYQVPEAEVVMLEQGKEPWALQGERPRQSCPGEKLWDHNQCRKILSYKQVSSQPQKMYPGEKAYECAKFEKIFTQKSQLKVHLKVLAGEKLYVCIECGKAFVQKPEFIIHQKTHMREKPFKCNECGKSFFQVSSLFRHQRIHTGEKLYECSQCGKGFSYNSDLSIHEKIHTGERHHECTDCGKAFTQKSTLKMHQKIHTGERSYICIECGQAFIQKTHLIAHRRIHTGEKPYECSNCGKSFISKSQLQVHQRVHTRVKPYICTEYGKVFSNNSNLVTHKKVQSREKSSICTECGKAFTYRSELIIHQRIHTGEKPYECSDCGKAFTQKSALTVHQRIHTGEKSYICMKCGLAFIQKAHLIAHQIIHTGEKPHKCGHCGKLFTSKSQLHVHKRIHTGEKPYMCNKCGKAFTNRSNLITHQKTHTGEKSYICSKCGKAFTQRSDLITHQRIHTGEKPYECNTCGKAFTQKSHLNIHQKIHTGERQYECHECGKAFNQKSILIVHQKIHTGEKPYVCTECGRAFIRKSNFITHQRIHTGEKPYECSDCGKSFTSKSQLLVHQPVHTGEKPYVCAECGKAFSGRSNLSKHQKTHTGEKPYICSECGKTFRQKSELITHHRIHTGEKPYECSDCGKSFTKKSQLQVHQRIHTGEKPYVCAECGKAFTDRSNLNKHQTTHTGDKPYKCGICGKGFVQKSVFSVHQSSHA", "length": 769 }, "evidence": [ { "id": "F1RKM7", "url": "https://omabrowser.org/oma/group/F1RKM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RKM7", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 585, "end_pos": 587, "annotation": "n_glycosylation_sequon" }, { "start_pos": 756, "end_pos": 758, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RKM7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 877, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RKM7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RKM7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RKM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 238, "end_pos": 265, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RKM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKM7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 99, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 585, "end_pos": 587 }, { "start_pos": 756, "end_pos": 758 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RG01-1", "uniprot_ac": "F1RG01", "uniprot_id": "F1RG01_PIG", "mass": { "chemical_mass": 133363.0, "monoisotopic_mass": 133363.0 }, "refseq": {}, "gene_names": [ { "name": "CRAMP1", "type": "recommended", "evidence": [ { "id": "F1RG01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ] } ], "protein_names": [ { "name": "Protein cramped-like", "type": "recommended", "evidence": [ { "id": "F1RG01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG01/entry#names_and_taxonomy" } ] }, { "name": "Cramped chromatin regulator homolog 1", "type": "synonym", "evidence": [ { "id": "F1RG01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG01/entry#names_and_taxonomy" } ] }, { "name": "Hematological and neurological expressed 1-like protein", "type": "synonym", "evidence": [ { "id": "F1RG01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG01/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor, which specifically drives expression of histone H1 genes. Binds to the promoters of H1 genes (H1-2, H1-3, H1-4, H1-5 and H1-10/H1x) together with NPAT and GON4L, positively regulating their transcription.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ARJ6", "url": "https://www.uniprot.org/uniprotkb/A0A287ARJ6#function" }, { "database": "UniProtKB", "id": "ARBA00094230", "url": "https://www.uniprot.org/uniprotkb/ARBA00094230#function" }, { "database": "UniProtKB", "id": "A0A5G2QIV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIV6#function" }, { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRAMP1", "url": "https://www.uniprot.org/uniprotkb/F1RG01", "locus": { "chromosome": "3", "start_pos": 40257685, "end_pos": 40308089, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008026", "url": "https://www.ensembl.org/id/ENSSSCG00000008026" } ] } } ], "crossref": [ { "id": "F1RG01", "url": "https://alphafold.ebi.ac.uk/entry/F1RG01", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008026", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008026", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21677:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21677:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ARJ6", "url": "https://www.uniprot.org/uniprotkb/A0A287ARJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG01-1", "url": "https://www.uniprot.org/uniprotkb/F1RG01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVKLGDGAGGEEGLKRLGKRSADEDSLEGEGPGGADAAEDGGGTKRDGKTPRDGGDGPQAPAGGPQAPSPPPAGPQDQHHFLRSSVRPQSKRLRKDSSCAGGSSGAGGSAPRGKGADGGASSAGNGSGGPPAPAGGSRASSRSLGSSGGEKEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYRKKGKPAGMVKNKEQVRHFYYRTWHKITKYIDFDNVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQAGATTVRYKGRNLRIKAPMCRALKKLCDPEGLSDEEDQKPVRLPLKVPVELQPRSNRAWARVQSLAQNPRLRMIVELHRKVSSLIEFLKQKWALHEVRIRKERQLQDSFPEPSQEKVALHLFPGENCTLTPLPGVARVVHSKAFCTVHWQEGGRCKQSAKDTHTLPPAQILGIQSGQGTARGQLKCPRGGAEGKGGVRPPPSTDASQSSGESSPESAPGEGAAPGFSSLDAPDRLPPGLQDAGGRLERTPVAAAAEGGDGPAREPGALACACGQLPELEDELSLLDPFPRYMKSCQDLIIPERGRCADPRPSGRTSPETRAPSSAEVADLARAGALSPIRVPPGLEPQPDVCTKDLADAPAEEPPPPQGQPAAKPPKDGPTGRLSQQLHEEGWNLQTSEGLTLAEVYLMMGKPSKLQLEYDWLAVLGPEGQASGGQAQGPCSGSPPAAFHKQRLLSCLLKLISTEVNPRLAPEANASSVISARPAQEEQLATPPGKVATVSSRSPRCPRNQAALRHSKAFSPSPAPCSSGLRNPPRPLLVAGPSSAGSSDSDGGLFAVPTTLPPNSRHGKLFSPSKEPELTLRQHLNSISMQSDFFLPKPRKLRNRHLRKPLVVQRTLLPRPSENQSHNVCSFSILSNSSVTGRGSFRPIQSSLTKAALSRPIVPKALPPQAAGHLASAIDLAAQSAGIIPGSPLPVLDAEGLSGISPLSPDEVTAAVAGQESTGPQQNRDPLPAVRGTGDPFISVPSRQEPVADSFQNPPVLSLPELSKAPLHNGLSAPLPPAEAPSTRLSPPNVSALLDISLPGPPEDVLSQGEPATQISDSIIEIAISSGQYGEGGPLSPAKLNGSDSSKSLPSPSGSPQPDWIASPTHDPQWCPSDPTDSSLSSLFASFISPEKSRKVLPAPAGTPSGTSLLGPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSIAEPGRREALFDGGGGGPPVGDLSQ", "length": 1266, "header": "tr|F1RG01-1|F1RG01_PIG Isoform 1 of Protein cramped-like OS=Sus scrofa OX=9823 GN=CRAMP1 PE=3 SV=4 CANONICAL=F1RG01-1" }, "isoforms": [ { "isoform_ac": "A0A287ARJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARJ6/entry", "sequence": { "sequence": "MEAPWLDCVCSHLGGSQGPSLIHHRLLSPEGADGGASSAGNGSGGPPAPAGGSRASSRSLGSSGGEKEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYRKKGKPAGMVKNKEQVRHFYYRTWHKITKYIDFDNVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQAGATTVRYKGRNLRIKAPMCRALKKLCDPEGLSDEEDQKPVRLPLKVPVELQPRSNRAWARVQSLAQNPRLRMIVELHRKVSSLIEFLKQKWALHEVRIRKERQLQDSFPEPSQEKVALHLFPGENCTLTPLPGVARVVHSKAFCTVHWQEGGRCKQSAKDTHTLPPAQILGIQSGQGTARGQLKCPRGGAEGKGGVRPPPSTDASQSSGESSPESAPGEGAAPGFSSLDAPDRLPPGLQDAGGRLERTPVAAAAEGGDGPAREPGALACACGQLPELEDELSLLDPFPRYMKSCQDLIIPERGRCADPRPSGRTSPETRAPSSAEVADLARAGALSPIRVPPGLEPQPDVCTKDLADAPAEEPPPPQGQPAAKPPKDGPTGRLSQQLHEEGWNLQTSEGLTLAEVYLMMGKPSKLQLEYDWLAVLGPEGQASGGQAQGPCSGSPPAAFHKQRLLSCLLKLISTEVNPRLAPEANASSVISARPAQEEQLATPPGKVATVSSRSPRCPRNQAALRHSKAFSPSPAPCSSGLRNPPRPLLVAGPSSAGSSDSDGGLFAVPTTLPPNSRHGKLFSPSKEPELTLRQHLNSISMQSDFFLPKPRKLRNRHLRKPLVVQRTLLPRPSENQSHNVCSFSILSNSSVTGRGSFRPIQSSLTKAALSRPIVPKALPPQAAGHLASAIDLAAQSAGIIPGSPLPVLDAEGLSGISPLSPDEVTAAVAGQESTGPQQNRDPLPAVRGTGDPFISVPSRQEPVADSFQNPPVLSLPELSKAPLHNGLSAPLPPAEAPSTRLSPPNVSALLDISLPGPPEDVLSQGEPATQISDSIIEIAISSGQYGEGGPLSPAKLNGSDSSKSLPSPSGSPQPDWIASPTHDPQWCPSDPTDSSLSSLFASFISPEKSRKVLPAPAGTPSGTSLLGPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSIAEPGRREALFDGGGGGPPVGDLSQ", "length": 1181, "header": "tr|A0A287ARJ6-1|A0A287ARJ6_PIG Computationally mapped isoform of Protein cramped-like OS=Sus scrofa OX=9823 GN=CRAMP1 PE=3 SV=3 CANONICAL=F1RG01-1" }, "locus": { "chromosome": "3", "start_pos": 40297175, "end_pos": 40261148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055038.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055038.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046707.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046707.3" } ] } }, { "isoform_ac": "A0A5G2QIV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIV6/entry", "sequence": { "sequence": "MTVKLGDGAGGEEGLKRLGKRSADEDSLEGEGPGGADAAEDGGGTKRDGKTPRDGGDGPQAPAGGPQAPSPPPAGPQDQHHFLRSSVRPQSKRLRKDSSCAGGSSGAGGSAPRGKGADGGASSAGNGSGGPPAPAGGSRASSRSLGSSGGEKEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYRKKGKPAGMVKNKEQVRHFYYRTWHKITKYIDFDNVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQAGATTVRYKGRNLRIKAPMCRALKKLCDPEGLSDEEDQKPVRLPLKVPVELQPRSNRAWARVQSLAQNPRLRMIVELHRKVSSLIEFLKQKWALHEVRIRKERQLQDSFPEPSQEKVALHLFPGENCTLTPLPGVARVVHSKAFCTVHWQEGGRCKQSAKDTHTLPPAQILGIQSGQGTARGQLKCPRGGAEGKGGVRPPPSTDASQSSGESSPESAPGEGAAPGFSSLDAPDRLPPGLQDAGGRLERTPVAAAAEGGDGPAREPGALACACGQLPELEDELSLLDPFPRYMKSCQDLIIPERGRCADPRPSGRTSPETRAPSSAEVADLARAGALSPIRVPPGLEPQPDVCTKDLADAPAEEPPPPQGQPAAKPPKDGPTGRLSQQLHEEGWNLQTSEGLTLAEVYLMMGKPSKLQLEYDWLAVLGPEGQASGGQAQGPCSGSPPAAFHKQRLLSCLLKLISTEVNPRLAPEANASSVISARPAQEEQLATPPGKVATVSSRSPRCPRNQAALRHSKAFSPSPAPCSSGLRNPPRPLLVAGPSSAGSSDSDGGLFAVPTTLPPNSRHGKLFSPSKEPELTLRQHLNSISMQSDFFLPKPRKLRNRHLRKPLVVQRTLLPRPSENQSHNVCSFSILSNSSVTGRGSFRPIQSSLTKAALSRPIVPKALPPQAAGHLASAIDLAAQSAGIIPGSPLPVLDAEGLSGISPLSPDEVTAAVAGQESTGPQQNRDPLVSGGPGCRLSKAPLHNGLSAPLPPAEAPSTRLSPPNVSALLDISLPGPPEDVLSQGEPATQISDSIIEIAISSGQYGEGGPLSPAKLNGSDSSKSLPSPSGSPQPDWIASPTHDPQWCPSDPTDSSLSSLFASFISPEKSRKVLPAPAGTPSGTSLLGPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSIAEPGRREALFDGGGGGPPVGDLSQ", "length": 1240, "header": "tr|A0A5G2QIV6-1|F1RG01_PIG Computationally mapped isoform of Protein cramped-like OS=Sus scrofa OX=9823 GN=CRAMP1 PE=3 SV=2 CANONICAL=F1RG01-1" }, "locus": { "chromosome": "3", "start_pos": 40305673, "end_pos": 40261148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086563.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086563.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064381.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064381.2" } ] } }, { "isoform_ac": "F1RG01-1", "url": "https://www.uniprot.org/uniprotkb/F1RG01/entry", "sequence": { "sequence": "MTVKLGDGAGGEEGLKRLGKRSADEDSLEGEGPGGADAAEDGGGTKRDGKTPRDGGDGPQAPAGGPQAPSPPPAGPQDQHHFLRSSVRPQSKRLRKDSSCAGGSSGAGGSAPRGKGADGGASSAGNGSGGPPAPAGGSRASSRSLGSSGGEKEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYRKKGKPAGMVKNKEQVRHFYYRTWHKITKYIDFDNVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQAGATTVRYKGRNLRIKAPMCRALKKLCDPEGLSDEEDQKPVRLPLKVPVELQPRSNRAWARVQSLAQNPRLRMIVELHRKVSSLIEFLKQKWALHEVRIRKERQLQDSFPEPSQEKVALHLFPGENCTLTPLPGVARVVHSKAFCTVHWQEGGRCKQSAKDTHTLPPAQILGIQSGQGTARGQLKCPRGGAEGKGGVRPPPSTDASQSSGESSPESAPGEGAAPGFSSLDAPDRLPPGLQDAGGRLERTPVAAAAEGGDGPAREPGALACACGQLPELEDELSLLDPFPRYMKSCQDLIIPERGRCADPRPSGRTSPETRAPSSAEVADLARAGALSPIRVPPGLEPQPDVCTKDLADAPAEEPPPPQGQPAAKPPKDGPTGRLSQQLHEEGWNLQTSEGLTLAEVYLMMGKPSKLQLEYDWLAVLGPEGQASGGQAQGPCSGSPPAAFHKQRLLSCLLKLISTEVNPRLAPEANASSVISARPAQEEQLATPPGKVATVSSRSPRCPRNQAALRHSKAFSPSPAPCSSGLRNPPRPLLVAGPSSAGSSDSDGGLFAVPTTLPPNSRHGKLFSPSKEPELTLRQHLNSISMQSDFFLPKPRKLRNRHLRKPLVVQRTLLPRPSENQSHNVCSFSILSNSSVTGRGSFRPIQSSLTKAALSRPIVPKALPPQAAGHLASAIDLAAQSAGIIPGSPLPVLDAEGLSGISPLSPDEVTAAVAGQESTGPQQNRDPLPAVRGTGDPFISVPSRQEPVADSFQNPPVLSLPELSKAPLHNGLSAPLPPAEAPSTRLSPPNVSALLDISLPGPPEDVLSQGEPATQISDSIIEIAISSGQYGEGGPLSPAKLNGSDSSKSLPSPSGSPQPDWIASPTHDPQWCPSDPTDSSLSSLFASFISPEKSRKVLPAPAGTPSGTSLLGPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELSIAEPGRREALFDGGGGGPPVGDLSQ", "length": 1266, "header": "tr|F1RG01-1|F1RG01_PIG Isoform 1 of Protein cramped-like OS=Sus scrofa OX=9823 GN=CRAMP1 PE=3 SV=4 CANONICAL=F1RG01-1" }, "locus": { "chromosome": "3", "start_pos": 40305673, "end_pos": 40261148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008795.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008795.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008571.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008571.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1182, "start_aa": "Thr", "end_pos": 1182, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1182", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "pmid": "" }, { "name": "histone locus body", "id": "GO:0035363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035363", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": "https://www.uniprot.org/uniprotkb/F1RG01" } ], "pmid": "" }, { "name": "pattern specification process", "id": "GO:0007389", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007389", "evidence": [ { "database": "UniProtKB", "id": "F1RG01", "url": 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"header": "tr|F1RN10-1|F1RN10_PIG Isoform 1 of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=3 CANONICAL=F1RN10-1" }, "isoforms": [ { "isoform_ac": "A0A286ZY86-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY86/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE", "length": 288, "header": "tr|A0A286ZY86-1|A0A286ZY86_PIG Computationally mapped isoform of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=1 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2399000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063564.2", "url": 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"https://www.ensembl.org/id/ENSSSCT00000071046.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064951.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064951.1" } ] } }, { "isoform_ac": "A0A5G2QX59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX59/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAAFFNTVTHENTEKIYKKIEPFEKNYQIETGKIKQGL", "length": 234, "header": "tr|A0A5G2QX59-1|F1RN10_PIG Computationally mapped isoform of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=1 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2482494, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080290.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080290.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068735.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068735.1" } ] } }, { "isoform_ac": "A0A5G2R1Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1Y5/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGMNCSCPS", "length": 225, "header": "tr|A0A5G2R1Y5-1|F1RN10_PIG Computationally mapped isoform of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=1 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2484093, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069359.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069359.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064543.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064543.1" } ] } }, { "isoform_ac": "A0A5G2R761-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R761/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGTCCNKSGKISN", "length": 227, "header": "tr|A0A5G2R761-1|F1RN10_PIG Computationally mapped isoform of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=2 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2405074, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076018.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076018.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073087.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073087.2" } ] } }, { "isoform_ac": "A0A5G2RD00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD00/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE", "length": 309, "header": "tr|A0A5G2RD00-1|F1RN10_PIG Computationally mapped isoform of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=1 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2399000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068442.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068442.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068564.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068564.1" } ] } }, { "isoform_ac": "F1RN09-1", "url": "https://www.uniprot.org/uniprotkb/F1RN09/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGVTHENTEKIYKKIEPFEKNYQIETGKIKQGL", "length": 248, "header": "tr|F1RN09-1|F1RN09_PIG Computationally mapped isoform of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=2 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2482494, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010512.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010512.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010239.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010239.3" } ] } }, { "isoform_ac": "F1RN10-1", "url": "https://www.uniprot.org/uniprotkb/F1RN10/entry", "sequence": { "sequence": "MAAAAGVPGALGTLRAGRARLVAAYCAGIGPGWRLPGSWTGLPVGPAIWARGWTPAAGGAAWRRGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERVKMHSSEVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLVTGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE", "length": 338, "header": "tr|F1RN10-1|F1RN10_PIG Isoform 1 of AU RNA binding methylglutaconyl-CoA hydratase OS=Sus scrofa OX=9823 GN=AUH PE=1 SV=3 CANONICAL=F1RN10-1" }, "locus": { "chromosome": "14", "start_pos": 2546287, "end_pos": 2399000, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010511.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010511.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010238.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010238.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJH4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155020", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155020", "resource": "KEGG Pathway" }, { "id": "R-SSC-70895", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70895", "resource": "Reactome", "description": "Branched-chain amino acid catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U419-1", "protein_name": "AU RNA binding methylglutaconyl-CoA hydratase", "gene_name": "AUH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAGSSMAAALGGLGLLHGRFRLAAAAAATSSALSPRAPVRGGAATFPSAGRNYGSEAKEEEELRVQYLDEEHKGIVVLGLNRSHAKNALNKNLLKMMSKAVDALKSDKKVRTVIFRSEVPGIFCAGADLKERAKMHSSEVGSFVSKARATINEMANLPVPTIAAIDGIALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGEGGNKTRIEKAPEAKLNIRGSARGGTQRLPRAIGVSLAKELIFSARIVDGEEAKSIGLISHVVEQNEAGDAAYRRALALAREFLPQGPVAMRVAKLAIDQGMEVDLVTGLAIEEACYAQTIPTKDRIEGLLAFKEKRSPRYKGE", "length": 350 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1Z934-1", "protein_name": "Methylglutaconyl-CoA hydratase, mitochondrial", "gene_name": "Dmel\\CG8778", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSMLIKRASGLARQLARPLVASRNLASAAPYGDGTEVLVERLDGARQGISVIGLNRPAAKNSFSRGMVETFNDVLEDIKKDNGSRVVVLRSLSPGIFCAGADLKERKGMTPEEATEFVKELRGLLIAIEQLPMPVIAAVDGAALGGGLEMALACDIRTAASDTKMGLVETRLAIIPGAGGTQRLPRILSPALAKELIFTARVFNGAEAKDLGLVNHVVKQNETQDAAYQQALKLAEEILPNGPVGVRMAKLAIDKGMQVDLATGYSIEEICYSQVIPTKDRLEGLAAFAEKRKPVYKGE", "length": 299 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1LU71-1", "protein_name": "Methylglutaconyl-CoA hydratase, mitochondrial", "gene_name": "Auh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAAAPGALGALSAGRVRLVAACCARLGSAAWARGTAPRRGYSSEVKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMALAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDRLEGLLAFKEKRPPRYKGE", "length": 315 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1RDX1-1", "protein_name": "4.2.1.18", "gene_name": "auh", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAIVRCRALFQLCRSQINISNGVYRSDSVLQTCLPKRLPCVHRAFSGGVRLYSSEVNSGDDLIVRYLDGDDSGIVVMGINRPEAKNAISKNLVSMMSEALESMKTDNTVRTVILCSMVPGIFCAGADLKERAKMQQSEVGPFVTKARTLISELGALPMPTIAAIDGAALGGGLEMALACDIRVAANSAKMGLVETKLAIIPGAGGTQRLPRTVGVSIAKELIFAARVLNGEEAKSLGLVNHAVEQNKGGDAAYLRALDLAREFIPQGPIAVRMAKLAINQGIEVDLKTGLAIEEACYSQVIPTKDRLEGLLAFKEKRPPRFKGE", "length": 325 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F4JML5-1", "protein_name": "Probable enoyl-CoA hydratase 2, mitochondrial", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSFVKYLRRDNLLQLAGKPSLSRNYILQTCRTLIIETSPPEFVKLNRLSGSDSGIIEVNLDRPVTKNAINKEMLKSLQNAFESIHQDNSARVVMIRSLVPGVFCAGADLKERRTMSPSEVHTYVNSLRYMFSFIEALSIPTIAAIEGAALGGGLEMALACDLRICGENAVFGLPETGLAIIPGAGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKGLVNICVTAGEAHEKAIEMAQQINEKGPLAIKMAKKAIDEGIETNMASGLEVEEMCYQKLLNTQDRLEGLAAFAEKRKPLYTGN", "length": 301 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q13825-1", "protein_name": "Methylglutaconyl-CoA hydratase, mitochondrial", "gene_name": "AUH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAVAAAPGALGSLHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE", "length": 339 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54HG7-1", "protein_name": "Methylglutaconyl-CoA hydratase, mitochondrial", "gene_name": "auh", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKHLIKNVSNSVKYNNVTSNNILFSTSSSLKFGRKFTTETQQECILERLEGENKGISVISFNRGHVKNALGKNLMNQFRSHLNELRFCPDTRVVIVRSLVDGVFCSGADLKERALMSQVEASQFVHSLRSSFTELETLQMPTIAAIEGVAVGGGTEMVLACDFRVASKSSKMGLPETGLAIIPGAGGTQRLPRLIGIPRAKELIFTGAILDSKRALEIGLVQYETEKGEAFDKAIEIAKQIIPKGPIAIRMAKQAIDRGMNVDQASGMIIEQASYAQVIPTKDRIEGLTAFKEKRKPIYKGE", "length": 303 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9JLZ3-1", "protein_name": "Methylglutaconyl-CoA hydratase, mitochondrial", "gene_name": "Auh", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAPGALGALRTGRVRLVAACCARLGPAAWARGTAPRRGYSSEVKTEDELRVRHLEEENRGIVVLGINRAYGKNALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDRLEGLLAFKEKRPPRYKGE", "length": 314 }, "evidence": [ { "id": "F1RN10", "url": "https://omabrowser.org/oma/group/F1RN10/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "F1RN10", "url": "https://www.uniprot.org/uniprotkb/F1RN10" } ], "pmid": "" }, { "name": "enoyl-CoA hydratase activity", "id": "GO:0004300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004300", "evidence": [ { "database": "UniProtKB", "id": "F1RN10", 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006635", "evidence": [ { "database": "UniProtKB", "id": "F1RN10", "url": "https://www.uniprot.org/uniprotkb/F1RN10" } ], "pmid": "" }, { "name": "L-leucine catabolic process", "id": "GO:0006552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006552", "evidence": [ { "database": "UniProtKB", "id": "F1RN10", "url": "https://www.uniprot.org/uniprotkb/F1RN10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"categories": [ "Protein Classification", "Other" ] }, { "id": "PF27091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF54-1", "url": "https://www.uniprot.org/uniprotkb/F1RF54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVQTPRKLLDLAGTSLLREEALAISVLEDLPTELFPPLFMEAFDGRHIETLKAMVQVWPFVRLPLGGLIDMPYMGPLQAVLEGIDLLLAQKVRPRRCKLRVLDLRDTGQSFWNMWSGSSTQVSPDSQMAPVAADRSRTKRSLAPLKVLIDLSLKRRTLDPFLTYLSRWVERRKDSILLCCRKLSISAMPMENIMKVLAQVQLDCIQEVQVNCTWKLSTLARFAPLLGQMTNVQKLLLSLIFMSALEEHEQQHVVQILSQFLRLHHLRDLHLECASFLEGRLDQMLRCLDHPLDNLSITYTLLTESDMTHLSQSSNIRQLKGLDLSGVMLAKFSPELLQVLLEKVAATLQELDLDLCGITDSQFEAILPALCHCSQLRYFSLRGNFLSMANMEKILRHVARLPNLSHEWYPAPQESYSPQGVPLEGRLKEIQAEVLEILKDLGRTRTIRISPSPCPHCGDDICDHLDLGTSICHRSSPRNCKKTKKF", "length": 487, "header": "tr|F1RF54-1|F1RF54_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100737881 PE=3 SV=4 CANONICAL=F1RF54-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJY3/entry", "sequence": { "sequence": "MSVQTPRKLLDLAGTSLLREEALAISVLEDLPTELFPPLFMEAFDGRHIETLKAMVQVWPFVRLPLGGLIDMPYMGPLQAVLEGIDLLLAQKVRPRRCKLRVLDLRDTGQSFWNMWSGSSTQVSPDSQMAPVAADRSRTKRSLAPLKVLIDLSLKRRTLDPFLTYLSRWVERRKDSILLCCRKLSISAMPMENIMKVLAQVQLDCIQEVQVNCTWKLSTLARFAPLLGQMTNVQKLLLSLIFMSALEEHEQQHVVQILSQFLRLHHLRDLHLECASFLEGRLDQMLRCLDHPLDNLSITYTLLTESDMTHLSQSSNIRQLKGLDLSGVMLAKFSPELLQVLLEKVAATLQELDLDLCGITDSQFEAILPALCHCSQLRYFSLRGNFLSMANMEKILRHVARLPNLSHEWYPAPQESYSPQGVPLEGRLKEIQFILQCLQLLTSKKVIIKNKRTLHRLWPAICPFLQVL", "length": 468, "header": "tr|A0A5G2QJY3-1|F1RF54_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100737881 PE=3 SV=1 CANONICAL=F1RF54-1" }, "locus": { "chromosome": "6", "start_pos": 72735296, "end_pos": 72732006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068241.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068241.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064278.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064278.1" } ] } }, { "isoform_ac": "F1RF54-1", "url": "https://www.uniprot.org/uniprotkb/F1RF54/entry", "sequence": { "sequence": "MSVQTPRKLLDLAGTSLLREEALAISVLEDLPTELFPPLFMEAFDGRHIETLKAMVQVWPFVRLPLGGLIDMPYMGPLQAVLEGIDLLLAQKVRPRRCKLRVLDLRDTGQSFWNMWSGSSTQVSPDSQMAPVAADRSRTKRSLAPLKVLIDLSLKRRTLDPFLTYLSRWVERRKDSILLCCRKLSISAMPMENIMKVLAQVQLDCIQEVQVNCTWKLSTLARFAPLLGQMTNVQKLLLSLIFMSALEEHEQQHVVQILSQFLRLHHLRDLHLECASFLEGRLDQMLRCLDHPLDNLSITYTLLTESDMTHLSQSSNIRQLKGLDLSGVMLAKFSPELLQVLLEKVAATLQELDLDLCGITDSQFEAILPALCHCSQLRYFSLRGNFLSMANMEKILRHVARLPNLSHEWYPAPQESYSPQGVPLEGRLKEIQAEVLEILKDLGRTRTIRISPSPCPHCGDDICDHLDLGTSICHRSSPRNCKKTKKF", "length": 487, "header": "tr|F1RF54-1|F1RF54_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100737881 PE=3 SV=4 CANONICAL=F1RF54-1" }, "locus": { "chromosome": "6", "start_pos": 72735015, "end_pos": 72732006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003824.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003824.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003737.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003737.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" }, { "name": "negative regulation of cell differentiation", "id": "GO:0045596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045596", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" }, { "name": "Cul2-RING ubiquitin ligase complex", "id": "GO:0031462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031462", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1RF54", "url": "https://www.uniprot.org/uniprotkb/F1RF54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RF54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 487, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RF54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RF54" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 212, "end_pos": 214 }, { "start_pos": 295, "end_pos": 297 }, { "start_pos": 404, "end_pos": 406 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 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"monoisotopic_mass": 39113.0 }, "refseq": { "ac": "XP_003127516", "name": "hsp70-binding protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127516" }, "gene_names": [ { "name": "HSPBP1", "type": "recommended", "evidence": [ { "id": "F1RMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ] }, { "name": "HSPBP1", "type": "synonym", "evidence": [ { "id": "XP_003127516", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127516" } ] } ], "protein_names": [ { "name": "Hsp70-binding protein 1", "type": "recommended", "evidence": [ { "id": "F1RMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR6/entry#names_and_taxonomy" } ] }, { "name": "Heat shock protein-binding protein 1", "type": "synonym", "evidence": [ { "id": "F1RMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR6/entry#names_and_taxonomy" } ] }, { "name": "Hsp70-interacting protein 1", "type": "synonym", "evidence": [ { "id": "F1RMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR6/entry#names_and_taxonomy" } ] }, { "name": "hsp70-binding protein 1", "type": "synonym", "evidence": [ { "id": "XP_003127516", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127516" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HSPBP1", "url": "https://www.uniprot.org/uniprotkb/F1RMR6", "locus": { "chromosome": "6", "start_pos": 59452935, "end_pos": 59464533, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003288", "url": "https://www.ensembl.org/id/ENSSSCG00000003288" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003288", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003288", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518376", "url": "https://www.ncbi.nlm.nih.gov/gene/100518376", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518376", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518376", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CHVQSGL", "url": "https://omabrowser.org/oma/group/CHVQSGL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMR6", "url": "https://www.orthodb.org/?gene=F1RMR6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19316", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19316", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19316:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19316:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08609", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08609", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127516", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127516", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BJM3", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UWG7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UWG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UWG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UWG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMR6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADQGSGGSRLPLALPPASQGCSSGGSGSSAGGSGNPPPPRNLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQPTPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQTCFSTPTDDSMDR", "length": 357, "header": "tr|F1RMR6-1|F1RMR6_PIG Isoform 1 of Hsp70-binding protein 1 OS=Sus scrofa OX=9823 GN=HSPBP1 PE=1 SV=2 CANONICAL=F1RMR6-1" }, "isoforms": [ { "isoform_ac": "A0A287BJM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM3/entry", "sequence": { "sequence": "MADQGSGGSRLPLALPPASQGCSSGGSGSSAGGSGNPPPPRNLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQPTPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLKALAPWTPPLTCSHSIPPSVHTALLIKVFLLHPLHCPLCHLPWRVPWERRRGMILGDLGSSGGDRSRLNLGIKKSVAL", "length": 420, "header": "tr|A0A287BJM3-1|A0A287BJM3_PIG Computationally mapped isoform of Hsp70-binding protein 1 OS=Sus scrofa OX=9823 GN=HSPBP1 PE=1 SV=2 CANONICAL=F1RMR6-1" }, "locus": { "chromosome": "6", "start_pos": 59463763, "end_pos": 59452938, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044581.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044581.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056574.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056574.3" } ] } }, { "isoform_ac": "A0A5G2QLG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLG3/entry", "sequence": { "sequence": "MAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQPTPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGGAARGRSGGGSWGAGALGGRDHPSDPTALPQGPCAPWAWSSSWWPSSGQNTAPSMSTCLEPCAGALAPKRPLPRGIKGLGSERSGNQGAGPPGASVPGLGGLTQQPGEEGGSFSHTNAPCTHAKQLSVRAAAVLCGVGSRLGTVLSTLFCTRLIELPGVVVWGWEAVGKSTLQMGKRRPIVREQLAGAPLGAVGMGRWACAEGCPKNGSPVPAAW", "length": 431, "header": "tr|A0A5G2QLG3-1|F1RMR6_PIG Computationally mapped isoform of Hsp70-binding protein 1 OS=Sus scrofa OX=9823 GN=HSPBP1 PE=1 SV=2 CANONICAL=F1RMR6-1" }, "locus": { "chromosome": "6", "start_pos": 59463619, "end_pos": 59455181, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076160.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076160.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062915.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062915.2" } ] } }, { "isoform_ac": "A0A8D0UWG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UWG7/entry", "sequence": { "sequence": "MCGDILGCRPLGRGRPGVLFNIVQCTECPPPPELSRLKRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQPTPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQTCFSTPTDDSMDR", "length": 326, "header": "tr|A0A8D0UWG7-1|F1RMR6_PIG Computationally mapped isoform of Hsp70-binding protein 1 OS=Sus scrofa OX=9823 GN=HSPBP1 PE=1 SV=1 CANONICAL=F1RMR6-1" }, "locus": { "chromosome": "6", "start_pos": 59461777, "end_pos": 59453332, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039479.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039479.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039241.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039241.2" } ] } }, { "isoform_ac": "F1RMR6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMR6/entry", "sequence": { "sequence": "MADQGSGGSRLPLALPPASQGCSSGGSGSSAGGSGNPPPPRNLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQPTPSSAGEAELAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGPAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDPCDSVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQTCFSTPTDDSMDR", "length": 357, "header": "tr|F1RMR6-1|F1RMR6_PIG Isoform 1 of Hsp70-binding protein 1 OS=Sus scrofa OX=9823 GN=HSPBP1 PE=1 SV=2 CANONICAL=F1RMR6-1" }, "locus": { "chromosome": "6", "start_pos": 59463763, "end_pos": 59453332, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003652.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003652.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003567.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003567.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 102, "start_aa": "Thr", "end_pos": 102, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr102", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518376", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518376", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q6IMX7-1", "protein_name": "Hsp70-binding protein 1", "gene_name": "Hspbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADKGSGGSRLPLALPPASQGCSSGSSGSSAGGSGNPRLPRNLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQATPPTAGEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPTDDSMDR", "length": 357 }, "evidence": [ { "id": "F1RMR6", "url": "https://omabrowser.org/oma/group/F1RMR6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99P31-1", "protein_name": "Hsp70-binding protein 1", "gene_name": "Hspbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKGSGGSRLPLALPPASQGCSSGGSGSSAGGSGNPRPPRNLQGLLQMAITAGSQEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKNCLRVLSQATPAMAGEAELATDQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDSCDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQREEYQEELEFCEKLLQTCFSSPTDDSMDR", "length": 357 }, "evidence": [ { "id": "F1RMR6", "url": "https://omabrowser.org/oma/group/F1RMR6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZL4-1", "protein_name": "Hsp70-binding protein 1", "gene_name": "HSPBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSDEGSRGSRLPLALPPASQGCSSGGGGGGSSAGGSGNSRPPRNLQGLLQMAITAGSEEPDPPPEPMSEERRQWLQEAMSAAFRGQREEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDSMDR", "length": 359 }, "evidence": [ { "id": "F1RMR6", "url": "https://omabrowser.org/oma/group/F1RMR6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" }, { "name": "molecular sequestering activity", "id": "GO:0140313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140313", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" }, { "name": "adenyl-nucleotide exchange factor activity", "id": "GO:0000774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000774", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of protein ubiquitination", "id": "GO:0031398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031398", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" }, { "name": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032436", "evidence": [ { "database": "UniProtKB", "id": "F1RMR6", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR6" }, { "id": "PF08609", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08609" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleotide exchange factor Fes1", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 137, "start_aa": "Leu", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 102 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RM03-1", "uniprot_ac": "F1RM03", "uniprot_id": "F1RM03_PIG", "mass": { "chemical_mass": 38313.0, "monoisotopic_mass": 38313.0 }, "refseq": { "ac": "XP_003127291", "name": "SUMO-activating enzyme subunit 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127291" }, "gene_names": [ { "name": "SAE1", "type": "recommended", "evidence": [ { "id": "F1RM03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM03" } ] }, { "name": "SAE1", "type": "synonym", "evidence": [ { "id": "XP_003127291", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127291" } ] } ], "protein_names": [ { "name": "SUMO-activating enzyme subunit 1", "type": "recommended", "evidence": [ { "id": "F1RM03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM03/entry#names_and_taxonomy" } ] }, { "name": "SUMO-activating enzyme subunit 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003127291", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127291" } ] }, { "name": "Ubiquitin-like 1-activating enzyme E1A", "type": "synonym", "evidence": [ { "id": "F1RM03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM03/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The heterodimer acts as an E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.", "evidence": [ { "database": "UniProtKB", "id": "F1RM03", "url": "https://www.uniprot.org/uniprotkb/F1RM03#function" }, { "database": "UniProtKB", "id": "ARBA00054090", "url": "https://www.uniprot.org/uniprotkb/ARBA00054090#function" }, { "database": "UniProtKB", "id": "A0A5G2QL83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL83#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RM03", "url": "https://www.uniprot.org/uniprotkb/F1RM03" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAE1", "url": "https://www.uniprot.org/uniprotkb/F1RM03", "locus": { "chromosome": "6", "start_pos": 53030582, "end_pos": 52957469, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003111", "url": "https://www.ensembl.org/id/ENSSSCG00000003111" } ] } } ], "crossref": [ { "id": "F1RM03", "url": "https://alphafold.ebi.ac.uk/entry/F1RM03", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003111", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003111", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01492", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01492", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515263", "url": "https://www.ncbi.nlm.nih.gov/gene/100515263", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035985", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035985", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515263", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515263", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFFGQFD", "url": "https://omabrowser.org/oma/group/EFFGQFD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AQE1", "url": "https://www.orthodb.org/?gene=A0A287AQE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RM03", "url": "https://www.orthodb.org/?gene=F1RM03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10953", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10953", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10953:SF162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10953:SF162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00899", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00899", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3065676", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3065676", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3065678", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3065678", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003127291", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127291", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQE1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F883", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F883", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F883-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F883-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM03", "url": "https://www.uniprot.org/uniprotkb/F1RM03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM03-1", "url": "https://www.uniprot.org/uniprotkb/F1RM03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDSLGVNPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGPK", "length": 346, "header": "tr|F1RM03-1|F1RM03_PIG Isoform 1 of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "isoforms": [ { "isoform_ac": "A0A287AQE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQE1/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDSLGVNPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGPK", "length": 288, "header": "tr|A0A287AQE1-1|A0A287AQE1_PIG Computationally mapped isoform of SUMO1 activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 53026197, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051264.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051264.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046258.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046258.1" } ] } }, { "isoform_ac": "A0A5G2QL83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL83/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDSLGVNPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKVKVTVESKTIDPLHHPLVDVPAERTQDCLSKLPGLSAVTHPFFLPSPSSSFLFPPHPILSSPSSWAFSK", "length": 385, "header": "tr|A0A5G2QL83-1|A0A5G2QL83_PIG Computationally mapped isoform of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 53022533, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069154.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069154.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065321.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065321.1" } ] } }, { "isoform_ac": "A0A5G2QMD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMD1/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDSLGVNPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGPK", "length": 265, "header": "tr|A0A5G2QMD1-1|F1RM03_PIG Computationally mapped isoform of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 53026197, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076719.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076719.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063262.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063262.1" } ] } }, { "isoform_ac": "A0A5G2QPG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPG6/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQGCVTLEWK", "length": 252, "header": "tr|A0A5G2QPG6-1|F1RM03_PIG Computationally mapped isoform of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 53010199, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101652.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101652.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081114.1" } ] } }, { "isoform_ac": "A0A5G2QPZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ6/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQGTASLRWPQCVQWLEGSWLRKL", "length": 266, "header": "tr|A0A5G2QPZ6-1|F1RM03_PIG Computationally mapped isoform of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 53022321, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083241.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083241.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064139.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064139.1" } ] } }, { "isoform_ac": "A0A8W4F883-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F883/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQGECITSVC", "length": 252, "header": "tr|A0A8W4F883-1|F1RM03_PIG Computationally mapped isoform of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 52993585, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094573.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094573.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075015.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075015.1" } ] } }, { "isoform_ac": "F1RM03-1", "url": "https://www.uniprot.org/uniprotkb/F1RM03/entry", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDSLGVNPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGPK", "length": 346, "header": "tr|F1RM03-1|F1RM03_PIG Isoform 1 of SUMO-activating enzyme subunit 1 OS=Sus scrofa OX=9823 GN=SAE1 PE=1 SV=1 CANONICAL=F1RM03-1" }, "locus": { "chromosome": "6", "start_pos": 53026197, "end_pos": 52957576, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003450.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003450.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003367.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003367.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMD1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515263", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515263", "resource": "KEGG Pathway" }, { "id": "R-SSC-3065676", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3065676", "resource": "Reactome", "description": "SUMO is conjugated to E1 (UBA2:SAE1)" }, { "id": "R-SSC-3065678", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3065678", "resource": "Reactome", "description": "SUMO is transferred from E1 to E2 (UBE2I, UBC9)" } ], "orthologs": [ { "uniprot_canonical_ac": "A2VE14-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "SAE1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTENIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTPDYFLLQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDALGVNPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGPN", "length": 346 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q06624-1", "protein_name": "DNA damage tolerance protein RHC31", "gene_name": "AOS1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDMKVEKLSEDEIALYDRQIRLWGMTAQANMRSAKVLLINLGAIGSEITKSIVLSGIGHLTILDGHMVTEEDLGSQFFIGSEDVGQWKIDATKERIQDLNPRIELNFDKQDLQEKDEEFFQQFDLVVATEMQIDEAIKINTLTRKLNIPLYVAGSNGLFAYVFIDLIEFISEDEKLQSVRPTTVGPISSNRSIIEVTTRKDEEDEKKTYERIKTKNCYRPLNEVLSTATLKEKMTQRQLKRVTSILPLTLSLLQYGLNQKGKAISFEQMKRDAAVWCENLGVPATVVKDDYIQQFIKQKGIEFAPVAAIIGGAVAQDVINILGKRLSPLNNFIVFDGITLDMPLFEF", "length": 347 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54WI4-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "sae1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTNPENTPMTTTNEGGKGLTEYEAKIYDRSIRLWGVDAQAKLRQSKVLFIGINGLMSEIIKNVVLAGVDSITLVDDHIITTSDLSAHLFINEDSVGKVISTESVFAISELNPLVTIDVYDKEIETMDDQFIKNYTMVVISDKNLNNVSKVNSLCRKNNVSFIFSHSFGLKGLFFSDLNEFKYFTKTTTEPPKTETHISIFKSFKESMGYDWSKTNSRTPLPFFALSTLYQFEEKHNRVPDNISDSDLSELKSIINSSIEKFNLKNTDSNKYFEETKDLLNKMNIEISPVCAIVGGIVGAEIIKIITQNMQVLNNFFFYDGVKGTGLVEQF", "length": 330 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6AXQ0-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "Sae1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVEKEEVSGGGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPEDLGAQFLIRTGSVGQNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTEFDAVCLTCCSKDVIIKVDQICHRNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVTKVSQGVEDGPDAKRAKLDSSETTMVKKKVLFCPVKEALAVDWSGEKAQAALKRTAPDYFLLQVLLKFRTDKGRDPTSDSYSEDAELLLQIRNDVFDSLGVSPDLLPDDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVECLGPQ", "length": 349 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6IQS6-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "sae1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIDTIEKEDTIISEEEAAQYDRQIRLWGLDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQVTEESRRAQFLIPVDADGQNHAQASLERAQFLNPMVEVKADTEPVESKPDDFFFQFDAVCLTRCSRDLMVRVDQLCASRNIKVFCGDVYGYNGYMFSDLGQEYHYVEEKPKVVKGSNEANDGPEAKKPKIDPNETTMVKKTISFCSLKEALEVDWTTEKAKSSLKRIPADYFLLQVLLKFRTDKGRDPQPDSFAEDSQLLLQIRDDVLETMGLSSDLLPNTFVSYCFSEMSPVCAVVGGVLGQEIVKALSQRDAPHRNFFFFDGLKGSGVVDYFSSK", "length": 348 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7KSM5-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "Aos1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVVDMDTSETAVELTEAENELYDRQIRLWGLESQKRLRTAKILIAGLCGLGAEITKNIILSGVNSVKLLDDKDVTEEDFCSQFLVPRESLNTNRAEASLTRARALNPMVDISADREPLKEKTSEFFGQFDVVVVNGATNEELLRIDTICRDLGVKFIATDVWGTFGFYFASLQKHSYVEDVIKHKVVANSEKKKKYETVSIPTQRDVDYPGYSAWLDFDVTEPSYLRKLKRNGPGVLLLSVLQKFRTTHKRDPSYKTREADLELLRGIRDELLPNSILGDEALGLIFAQISPAVAVVGGVVAQEVIKVVTKLEAPHRNLFVFDPETCAGYVEAIGAK", "length": 337 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q8VY78-1", "protein_name": "SUMO-activating enzyme subunit 1A", "gene_name": "SAE1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": 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"MVEKEEAGGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGPK", "length": 346 }, "evidence": [ { "id": "F1RM03", "url": "https://omabrowser.org/oma/group/F1RM03/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ubiquitin-like modifier activating enzyme activity", "id": "GO:0008641", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008641", "evidence": [ { "database": "UniProtKB", "id": "F1RM03", "url": "https://www.uniprot.org/uniprotkb/F1RM03" } ], "pmid": "" }, { "name": "SUMO activating enzyme activity", "id": "GO:0019948", "url": 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[ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-390522", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390522", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-438066", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-438066", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230595", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230595", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AU97", "url": "https://www.uniprot.org/uniprotkb/A0A287AU97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AU97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AU97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIH3", "url": "https://www.uniprot.org/uniprotkb/A0A287BIH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHL9", "url": "https://www.uniprot.org/uniprotkb/F1RHL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCP0", "url": "https://www.uniprot.org/uniprotkb/I3LCP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCP0-1", "url": "https://www.uniprot.org/uniprotkb/I3LCP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 894, "header": "tr|F1RHL9-1|F1RHL9_PIG Isoform 1 of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=1 CANONICAL=F1RHL9-1" }, "isoforms": [ { "isoform_ac": "A0A287AU97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AU97/entry", "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSPIQNYFKKLVLLFLMQDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 872, "header": "tr|A0A287AU97-1|A0A287AU97_PIG Computationally mapped isoform of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=3 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742617, "end_pos": 54672704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037537.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037537.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047684.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047684.3" } ] } }, { "isoform_ac": "A0A287BIH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIH3/entry", "sequence": { "sequence": "RSPGHRYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSPIQNYFKKLVLLFLMQDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 870, "header": "tr|A0A287BIH3-1|A0A287BIH3_PIG Computationally mapped isoform of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=2 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742640, "end_pos": 54672704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061348.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061348.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056168.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056168.2" } ] } }, { "isoform_ac": "A0A5G2QLU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLU2/entry", "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSPIQNYFKKLVLLFLMQDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSSPPSESWLLISPTSWQRSCVESCPQTRRSTASRGCLPTQAQAACLVPWITPPSPPPSTGRAICEAGFCNHWSHQNAIKAEVTVRFLETLTSFIKREKTCFASSVIASSWEMAEVRFF", "length": 920, "header": "tr|A0A5G2QLU2-1|A0A5G2QLU2_PIG Computationally mapped isoform of Actinin alpha 2 OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=2 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742617, "end_pos": 54672541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069068.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069068.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065015.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065015.2" } ] } }, { "isoform_ac": "A0A5G2QN32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN32/entry", "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDLVYTARPDERAIMTYVSCYYHAFAGAQKAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 894, "header": "tr|A0A5G2QN32-1|F1RHL9_PIG Computationally mapped isoform of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=1 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742617, "end_pos": 54672704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085409.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085409.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059726.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059726.1" } ] } }, { "isoform_ac": "A0A5G2QP94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP94/entry", "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSPIQNYFKKLVLLFLMQDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 884, "header": "tr|A0A5G2QP94-1|F1RHL9_PIG Computationally mapped isoform of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=1 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742617, "end_pos": 54672704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066734.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066734.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066718.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066718.1" } ] } }, { "isoform_ac": "F1RHL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RHL9/entry", "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQAETAANRICKVLAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 894, "header": "tr|F1RHL9-1|F1RHL9_PIG Isoform 1 of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=1 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742617, "end_pos": 54672704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011106.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011106.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010818.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010818.2" } ] } }, { "isoform_ac": "I3LCP0-1", "url": "https://www.uniprot.org/uniprotkb/I3LCP0/entry", "sequence": { "sequence": "MNQVEPGVQYNYVYEDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFAGAEQLLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERTEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSILAIQNEVEKVIQSYNIRISSSNPYSTVTVDDIRAKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQILTRDAKGITQEQMNEFRASFNHFDRRKNGLMDHEDFRACLISMGYDLGEAEFARIMTLVDPNGQGTVTFQSFIDFMTRETADTDTAEQVIASFRILASDKPYILAEELRRELPPDQAQYCIKRMPAYSGPGSVPGALDYTAFSSALYGESDL", "length": 863, "header": "tr|I3LCP0-1|F1RHL9_PIG Computationally mapped isoform of F-actin cross-linking protein OS=Sus scrofa OX=9823 GN=ACTN2 PE=1 SV=4 CANONICAL=F1RHL9-1" }, "locus": { "chromosome": "14", "start_pos": 54742617, "end_pos": 54672704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023830.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023830.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021816.4", "url": "https://www.ensembl.org/id/ENSSSCP00000021816.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157406", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157406", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" }, { "id": "R-SSC-390522", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390522", "resource": "Reactome", "description": "Striated Muscle Contraction" }, { "id": "R-SSC-438066", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-438066", "resource": "Reactome", 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"https://www.uniprot.org/uniprotkb/A0A5G2QN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1ZRY3", "url": "https://www.uniprot.org/uniprotkb/A0A8D1ZRY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1ZRY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1ZRY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIJ5", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEYERLQREREERRLQQRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRHERVKAIDVTVPLQCLVRDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMALDSEALRIPKQSHRIDTDG", "length": 559, "header": "tr|F1RIJ5-1|F1RIJ5_PIG Isoform 1 of DnaJ homolog subfamily C member 11 OS=Sus scrofa OX=9823 GN=DNAJC11 PE=1 SV=3 CANONICAL=F1RIJ5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN68-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN68/entry", "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEYERLQREREERRLQQRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQGVSLKVKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRHERVKAIDVTVPLQCLVRDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMALDSEALRIPKQSHRIDTDG", "length": 507, "header": "tr|A0A5G2QN68-1|F1RIJ5_PIG Computationally mapped isoform of DnaJ homolog subfamily C member 11 OS=Sus scrofa OX=9823 GN=DNAJC11 PE=1 SV=1 CANONICAL=F1RIJ5-1" }, "locus": { "chromosome": "6", "start_pos": 67529889, "end_pos": 67463899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073717.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073717.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066104.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066104.1" } ] } }, { "isoform_ac": "A0A8D1ZRY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1ZRY3/entry", "sequence": { "sequence": "MLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEYERLQREREERRLQQRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRHERVKAIDVTVPLQCLVRDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMALDSEALRIPKQSHRIDTDG", "length": 521, "header": "tr|A0A8D1ZRY3-1|F1RIJ5_PIG Computationally mapped isoform of DnaJ homolog subfamily C member 11 OS=Sus scrofa OX=9823 GN=DNAJC11 PE=1 SV=1 CANONICAL=F1RIJ5-1" }, "locus": { "chromosome": "6", "start_pos": 67503322, "end_pos": 67463899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081256.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081256.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072001.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072001.1" } ] } }, { "isoform_ac": "F1RIJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5/entry", "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEYERLQREREERRLQQRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAVVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVLYFAMHRLVIKPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVSDRSKRHERVKAIDVTVPLQCLVRDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMALDSEALRIPKQSHRIDTDG", "length": 559, "header": "tr|F1RIJ5-1|F1RIJ5_PIG Isoform 1 of DnaJ homolog subfamily C member 11 OS=Sus scrofa OX=9823 GN=DNAJC11 PE=1 SV=3 CANONICAL=F1RIJ5-1" }, "locus": { "chromosome": "6", "start_pos": 67529889, "end_pos": 67463899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003755.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003755.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003669.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003669.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QN68", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN68" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518845", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518845", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2NL21-1", "protein_name": "DnaJ homolog subfamily C member 11", "gene_name": "DNAJC11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASCEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQQRTNPKGTISVGIDATDLFDRYEEEYEDVSGSGFPQIEINKMHISQSIEAPLTASDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTHCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGVQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSIGVPQGVSLKIKLNRASQTYFFPIHLTDQLLPSAVFYATAGPLVLYFALHRLVIRPYLRAQKEKELEKQRESTATDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSKKSEKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMALDSEALRIPKQSHRIDTDG", "length": 559 }, "evidence": [ { "id": "F1RIJ5", "url": "https://omabrowser.org/oma/group/F1RIJ5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q39079-1", "protein_name": "Chaperone protein dnaJ 13", "gene_name": "ATJ13", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMGQEAAPTGPPNRELYALLNLSPEASDEEIRKAYRQWAQVYHPDKIQSPQMKEVATENFQRICEAYEILSDETKRLIYDLYGMEGLNSGLELGPRLSKADEIKEELERIKRRNEEAKKMAHFQPTGSILFNLSVPHFLVGDGIMRGMVMASQVQSQLSKDDAIAIGGNLAANEKSGGGVATAILRRQISPVSSIEFVASTGLQSLIGVQTTRQLTIHSTATINISKSLSDGSINLTNTWTRQLSETSSGNIELALGMRSAITVGWKKRDENVSAAGDFKIESGGLGASARYTRKLSSKSHGRIVGRIGSNALEIELGGGRQISEFSTVRMMYTVGLKGIFWKVELHRGSQKLIVPILLSAHLAPVFATGAFIVPTSLYFLLKKFVVKPYLLKREKQKALENMEKTWGQVGEARARAEKAQQLLQTVATRKKNRQVETDGLIVTKALYGDPKAIERRNEGVEGLDSGVIDVTVPMNFLVSDSGQLKLHEGVKKSGIMGFCDPCPGQPKQLYIAYTYHSQPFEVIVGDYEELSIPQEGQ", "length": 538 }, "evidence": [ { "id": "F1RIJ5", "url": "https://omabrowser.org/oma/group/F1RIJ5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q54PV9-1", "protein_name": "DnaJ homolog subfamily C member 11 homolog", "gene_name": "dnajc11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKIDKDILKIFESKENEQFDEDQEKDEKKMNEVDFYSILNISRNATDDEIKIAFKKLAFTYHPDKQTNEELKKETQDIFTLITLAKDTLSDPKLRAIYDQFGLEGIEHSKAIVNKYKEVDKLLQALDRIQKENEEDKLIQSFSATGSQSISLAYHHEYRHFFFKTLKSEAQFDIKTQKYGSFEFVPSITRKKNLAWFGLETSYLYPITQNTELFLSNNYNEANEGSIQTIGLKSLLSANTYGSIHCAFFDSFQPARFGCLLTRQLSPTITAIFRGTLQKEFWQGSLTLKRIVQKRLFEITIDSSNLGGLSGSITRDIPISKKSRISFSVGGYGGGFPLYSAGQHGFTGAAIGFKRKITKVFDIDLSMHVNPSRYLYVIGLHHRYQSLEIPIPIYSDLSLSTSLLFFTLPAVTLSLLKYLVVKPLMKKKEQKKIMEKKEKYADQARKAKRKAEMDITLVKQLVENKVLKEKTKNGLIIQEAVYGKLDEKVDHSDPFSVEFPPTIDVTIPLQYLVEDSKLVLHGNNKKSDLLGFWDPRISEEKQLKVTYFFQNRLHRITVNDIDQLLIPLKSHLIQ", "length": 575 }, "evidence": [ { "id": "F1RIJ5", "url": "https://omabrowser.org/oma/group/F1RIJ5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5U458-1", "protein_name": "DnaJ homolog subfamily C member 11", "gene_name": "Dnajc11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERKRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDRYDEEYEDVSGSGFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSVNFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTCHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLGAAVSIGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVVYLAVHRLIIRPYLRAQKEKELEKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKNEKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMVPDSEALRIPKQSHRIDTDG", "length": 559 }, "evidence": [ { "id": "F1RIJ5", "url": "https://omabrowser.org/oma/group/F1RIJ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVH1-1", "protein_name": "DnaJ homolog subfamily C member 11", "gene_name": "DNAJC11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLSDPQTRAIYDIYGKRGLEMEGWEVVERRRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFDRYDEEYEDVSGSSFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSINFALRRVTSAKGWGELEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAMNTSIVRDTKTSHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTVVEYGAERKISRHSVLGAAVSVGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAMFYATVGPLVVYFAMHRLIIKPYLRAQKEKELEKQRESAATDVLQKKQEAESAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKSEKVKVIDVTVPLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKNLKVLYQFRGVLHQVMVLDSEALRIPKQSHRIDTDG", "length": 559 }, "evidence": [ { "id": "F1RIJ5", "url": "https://omabrowser.org/oma/group/F1RIJ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "F1RIJ5", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RIJ5", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5" } ], "pmid": "" }, { "name": "SAM complex", "id": "GO:0001401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001401", "evidence": [ { "database": "UniProtKB", "id": "F1RIJ5", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5" } ], "pmid": "" }, { "name": "MICOS complex", "id": "GO:0061617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061617", "evidence": [ { "database": "UniProtKB", "id": "F1RIJ5", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cristae formation", "id": "GO:0042407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042407", "evidence": [ { "database": "UniProtKB", "id": "F1RIJ5", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIJ5" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 82, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 230, "end_pos": 232 }, { "start_pos": 281, "end_pos": 283 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGC1-1", "uniprot_ac": "F1RGC1", "uniprot_id": "F1RGC1_PIG", "mass": { "chemical_mass": 124094.0, "monoisotopic_mass": 124094.0 }, "refseq": {}, "gene_names": [ { "name": "DENND2B", "type": "recommended", "evidence": [ { "id": "F1RGC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGC1" } ] } ], "protein_names": [ { "name": "DENN domain containing 2B", "type": "synonym", "evidence": [ { "id": "F1RGC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGC1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGC1", "url": "https://www.uniprot.org/uniprotkb/F1RGC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DENND2B", "url": "https://www.uniprot.org/uniprotkb/F1RGC1", "locus": { "chromosome": "9", "start_pos": 703382, "end_pos": 665282, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014568", "url": "https://www.ensembl.org/id/ENSSSCG00000014568" } ] } } ], "crossref": [ { "id": "F1RGC1", "url": "https://alphafold.ebi.ac.uk/entry/F1RGC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014568", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014568", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15288:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15288:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03455", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03455", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QNC8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0W7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0W7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0W7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAR6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKJ9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGC1", "url": "https://www.uniprot.org/uniprotkb/F1RGC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGC1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMTANKNSGLAHRAGGTKAPRGTLSRSQSVSPPPVLSPPRSPIYPLSDSETSACRYPSRSGSRLLLKDWQPRDPSPPNPQAPTPDASPPFCPLKATSFGYLDRSPSVCKRDDQAEGSAGAARGVAGLAACLPLAQSTPAPGPAAGPRGAFLNRPGPRACSLGIREKISAWEGRREAAPRTSACGERREGSGGASTASEGCPGAGCASVEPSPCSSEKTFDFKALRRMSRTFSECSYPETEEEGEALPARDSRHRLERRPGRSEPGPGPRGQGGRKESSAVLSRIQKIEQALKEQPGRGLPQLPSSCYSVERGRRKPGTLEEPAGSTGGRAGGGREGRGSVGATQPGAPANSLAPQPLSSRSSPDPAVNPVPKPKRTFEYEADKNPKSQPSNGLPPSPTPAAPPPLPSTPAPPATRRPRKDLRAHRKAQSRKSFEFEDASSLQSLYPSSPTENGTESQPKFGSKSTLEENAYEDIVGDLPKENPYEDVDLKSRRAGRKPQPLSETSLDSLHRMWSPQDRKYNNPAAQLSLKPGSQSLRSGNWSERKSHRLPRLPKRHSHDDMLLLAQLSLPSSPSSLNEDSLSTTSELLSSRRARRIPKLVQRINSIYSAKRGKKRLKKLSMSSIETASLRGGGLAGQPASLTRTPPPAHTQRLVHIQSVLKRAPSYRTLELELLEWQERELFEYFVVVSLRKRPSRNTYLPEVSYQFPKLDRPTKQMREAEERLKAIPQFCFPDAKDWLPVSEYSSETFSFMLTGEDGSRRFGYCRRLLPSGKGPRLPEVYCVISRLGCFGLFSKVLDEVERRRGVSAALVYPFMRSLMESPFPAPGKTIRVKTFLPGAGNEVLELRRPTDSRLEHVDFECLFTCLSVRQLIRVFASLLLERRVIFIADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDIVCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSEDECHTLNGLVSEVFIRFFVEAVGHYSLFLTQTEKGERAFQREAFRKSVASKSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQSGMNKFLRGLGNKMKFLHKKT", "length": 1123, "header": "tr|F1RGC1-1|F1RGC1_PIG Isoform 1 of DENN domain containing 2B OS=Sus scrofa OX=9823 GN=DENND2B PE=1 SV=4 CANONICAL=F1RGC1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNC8/entry", "sequence": { "sequence": "TPTPGRDLPKENPYEDVDLKSRRAGRKPQPLSETSLDSLHRMWSPQDRKYNNPAAQLSLKPGSQSLRSGNWSERKSHRLPRLPKRHSHDDMLLLAQLSLPSSPSSLNEDSLSTTSELLSSRRARRIPKLVQRINSIYSAKRGKKRLKKLSMSSIETASLRDENSESESDSDDRFKAHTQRLVHIQSVLKRAPSYRTLELELLEWQERELFEYFVVVSLRKRPSRNTYLPEVSYQFPKLDRPTKQMREAEERLKAIPQFCFPDAKDWLPVSEYSSETFSFMLTGEDGSRRFGYCRRLLPSGKGPRLPEVYCVISRLGCFGLFSKVLDEVERRRGVSAALVYPFMRSLMESPFPAPGKTIRVKTFLPGAGNEVLELRRPTDSRLEHVDFECLFTCLSVRQLIRVFASLLLERRVIFIADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDIVCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSEDECHTLNGLVSEVFIRFFVEAVGHYSLFLTQTEKGERAFQREAFRKSVASKSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQSGMNKFLRGLGNKMKFLHKKT", "length": 650, "header": "tr|A0A5G2QNC8-1|F1RGC1_PIG Computationally mapped isoform of DENN domain containing 2B OS=Sus scrofa OX=9823 GN=DENND2B PE=1 SV=1 CANONICAL=F1RGC1-1" }, "locus": { "chromosome": "9", "start_pos": 702715, "end_pos": 684984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070713.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070713.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065554.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065554.1" } ] } }, { "isoform_ac": "A0A5G2R0W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0W7/entry", "sequence": { "sequence": "EVLDEVERRRGVSAALVYPFMRSLMESPFPAPGKTIRVKTFLPGAGNEVLELRRPTDSRLEHVDFECLFTCLSVRQLIRVFASLLLERRVIFIADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDIVCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSEDECHTLNGLVSEVFIRFFVEAVGHYSLFLTQTEKGERAFQREAFRKSVASKSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQSGMNKFLRGLGNKMKFLHKKT", "length": 328, "header": "tr|A0A5G2R0W7-1|F1RGC1_PIG Computationally mapped isoform of DENN domain containing 2B OS=Sus scrofa OX=9823 GN=DENND2B PE=1 SV=1 CANONICAL=F1RGC1-1" }, "locus": { "chromosome": "9", "start_pos": 702715, "end_pos": 693549, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089156.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089156.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070020.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070020.1" } ] } }, { "isoform_ac": "A0A5G2RAR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAR6/entry", "sequence": { "sequence": "TPTPGRDLPKENPYEDVDLKSRRAGRKPQPLSETSLDSLHRMWSPQDRKYNNPAAQLSLKPGSQSLRSGNWSERKSHRLPRLPKRHSHDDMLLLAQLSLPSSPSSLNEDSLSTTSELLSSRRARRIPKVGFPDRAAGAGQGQAGRWLSASLTRTPPPAHTQRLVHIQSVLKRAPSYRTLELELLEWQERELFEYFVVVSLRKRPSRNTYLPEVSYQFPKLDRPTKQMREAEERLKAIPQFCFPDAKDWLPVSEYSSETFSFMLTGEDGSRRFGYCRRLLPSGKGPRLPEVYCVISRLGCFGLFSKVLDEVERRRGVSAALVYPFMRSLMESPFPAPGKTIRVKTFLPGAGNEVLELRRPTDSRLEHVDFECLFTCLSVRQLIRVFASLLLERRVIFIADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDIVCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSEDECHTLNGLVSEVFIRFFVEAVGHYSLFLTQTEKGERAFQREAFRKSVASKSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQSGMNKFLRGLGNKMKFLHKKT", "length": 632, "header": "tr|A0A5G2RAR6-1|F1RGC1_PIG Computationally mapped isoform of DENN domain containing 2B OS=Sus scrofa OX=9823 GN=DENND2B PE=1 SV=2 CANONICAL=F1RGC1-1" }, "locus": { "chromosome": "9", "start_pos": 702715, "end_pos": 684984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084958.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084958.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067698.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067698.2" } ] } }, { "isoform_ac": "A0A5G2RKJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKJ9/entry", "sequence": { "sequence": "MTMTANKNSGLAHRAGGTKAPRGTLSRKSFEFEDASSLQSLYPSSPTENGTESQPKFGSKSTLEENAYEDIVGDLPKENPYEDVDLKSRRAGRKPQPLSETSLDSLHRMWSPQDRKYNNPAAQLSLKPGSQSLRSGNWSERKSHRLPRLPKRHSHDDMLLLAQLSLPSSPSSLNEDSLSTTSELLSSRRARRIPKLVQRINSIYSAKRGKKRLKKLSMSSIETASLRGGGLAGQPASLTRTPPPAHTQRLVHIQSVLKRAPSYRTLELELLEWQERELFEYFVVVSLRKRPSRNTYLPEVSYQFPKLDRPTKQMREAEERLKAIPQFCFPDAKDWLPVSEYSSETFSFMLTGEDGSRRFGYCRRLLPSGKGPRLPEVYCVISRLGCFGLFSKVLDEVERRRGVSAALVYPFMRSLMESPFPAPGKTIRVKTFLPGAGNEVLELRRPTDSRLEHVDFECLFTCLSVRQLIRVFASLLLERRVIFIADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDIVCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSEDECHTLNGLVSEVFIRFFVEAVGHYSLFLTQTEKGERAFQREAFRKSVASKSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQSGMNKFLRGLGNKMKFLHKKT", "length": 719, "header": "tr|A0A5G2RKJ9-1|F1RGC1_PIG Computationally mapped isoform of DENN domain containing 2B OS=Sus scrofa OX=9823 GN=DENND2B PE=1 SV=1 CANONICAL=F1RGC1-1" }, "locus": { "chromosome": "9", "start_pos": 702715, "end_pos": 665307, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076705.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076705.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072657.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072657.2" } ] } }, { "isoform_ac": "F1RGC1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGC1/entry", "sequence": { "sequence": "MTMTANKNSGLAHRAGGTKAPRGTLSRSQSVSPPPVLSPPRSPIYPLSDSETSACRYPSRSGSRLLLKDWQPRDPSPPNPQAPTPDASPPFCPLKATSFGYLDRSPSVCKRDDQAEGSAGAARGVAGLAACLPLAQSTPAPGPAAGPRGAFLNRPGPRACSLGIREKISAWEGRREAAPRTSACGERREGSGGASTASEGCPGAGCASVEPSPCSSEKTFDFKALRRMSRTFSECSYPETEEEGEALPARDSRHRLERRPGRSEPGPGPRGQGGRKESSAVLSRIQKIEQALKEQPGRGLPQLPSSCYSVERGRRKPGTLEEPAGSTGGRAGGGREGRGSVGATQPGAPANSLAPQPLSSRSSPDPAVNPVPKPKRTFEYEADKNPKSQPSNGLPPSPTPAAPPPLPSTPAPPATRRPRKDLRAHRKAQSRKSFEFEDASSLQSLYPSSPTENGTESQPKFGSKSTLEENAYEDIVGDLPKENPYEDVDLKSRRAGRKPQPLSETSLDSLHRMWSPQDRKYNNPAAQLSLKPGSQSLRSGNWSERKSHRLPRLPKRHSHDDMLLLAQLSLPSSPSSLNEDSLSTTSELLSSRRARRIPKLVQRINSIYSAKRGKKRLKKLSMSSIETASLRGGGLAGQPASLTRTPPPAHTQRLVHIQSVLKRAPSYRTLELELLEWQERELFEYFVVVSLRKRPSRNTYLPEVSYQFPKLDRPTKQMREAEERLKAIPQFCFPDAKDWLPVSEYSSETFSFMLTGEDGSRRFGYCRRLLPSGKGPRLPEVYCVISRLGCFGLFSKVLDEVERRRGVSAALVYPFMRSLMESPFPAPGKTIRVKTFLPGAGNEVLELRRPTDSRLEHVDFECLFTCLSVRQLIRVFASLLLERRVIFIADKLSTLSSCSHAVVALLYPFSWQHTFIPVLPASMIDIVCCPTPFLVGLLSSSLPKLKELPVEEALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSEDECHTLNGLVSEVFIRFFVEAVGHYSLFLTQTEKGERAFQREAFRKSVASKSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQSGMNKFLRGLGNKMKFLHKKT", "length": 1123, "header": "tr|F1RGC1-1|F1RGC1_PIG Isoform 1 of DENN domain containing 2B OS=Sus scrofa OX=9823 GN=DENND2B PE=1 SV=4 CANONICAL=F1RGC1-1" }, "locus": { "chromosome": "9", "start_pos": 702715, "end_pos": 665307, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015918.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015918.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015498.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015498.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 399, "start_aa": "Thr", "end_pos": 399, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr399", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 409, "start_aa": "Thr", "end_pos": 409, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr409", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 84, "start_aa": "Thr", "end_pos": 84, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr84", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder 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"tr|F1RKJ9-1|F1RKJ9_PIG Isoform 1 of Isochorismatase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ISOC1 PE=1 SV=3 CANONICAL=F1RKJ9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV7/entry", "sequence": { "sequence": "MAAAEPAVPALPGGGAGAGAPSGTVPVLFCFSVFARPSAVPHGAGYELLIQKFLSLYGDQIDMHRKFVVQLFAEEWGQYVDLPKGFAVSERCKVRLVPLQIQLTTLGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVSQRLVCLFFFSSVCRSMIYIHTHMYVYCQLPVFFFSSQLQGARILGIPVIVTEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVETHVCIQQTALELVGRGIEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNLIKASAPESGLLSKV", "length": 331, "header": "tr|A0A5G2QNV7-1|F1RKJ9_PIG Computationally mapped isoform of Isochorismatase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ISOC1 PE=1 SV=1 CANONICAL=F1RKJ9-1" }, "locus": { "chromosome": "2", "start_pos": 131876581, "end_pos": 131857185, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081422.1", "url": 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"database": "Ensembl Peptide", "id": "ENSSSCP00000015167.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015167.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNV7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517640", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6QLY4-1", "protein_name": "Isochorismatase domain-containing protein 1", "gene_name": "ISOC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAEPAVPALPGGGGAGAGAPSGTVPVLFCFSVFARPAAVPHGAGYELLIQKFLSLYGDQIDMHRKFVVQLFAEEWGQYVDLPKGFAVSERCKVRLVPLQIQLTTLGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVETHVCIQQTALELVGRGIEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNLIKASAPESGLLSKV", "length": 298 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q08C33-1", "protein_name": "Isochorismatase domain-containing protein 1", "gene_name": "isoc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADTHSNNNHVPVLFSFSVFSRASSVPVGSGYEVLIQKFLSIYGSQIDVHRKLVLQYFSEEWGQYIDLPKGFTVSEKCRLRLVPLQMDITTLGNLSPATSVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVVVSEQYPKGLGSTVQEMDLTGAKLVFPKTKFSMVIPELEAALAEIPGVRSVVLFGVETHVCIQQTALDLIGRGFEVHIVADATSSRSMMDRMFALERLARTGIIITTSESVLLQLVADKEHPKFKEIQNIIKVSAPESGLLSKV", "length": 283 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q54NZ6-1", "protein_name": "Isochorismatase family protein 1A", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSVGNLSPNTSLLFICDIQSKFENHIFKFNDVVGQSKYMIKICNELKVPIIFTEQYPKGLGHTVEDLLKERNENNQTKIFEKTLYSMCTNEVLNHLKQNHKDLKSILITGIETHVCVLQSTLDFLENGYDVHILSDAVSSNNNNDRLIALERMRQSGAFITTTETITFQLTKDAKHKSFKNIVPLSQERREYLLANPSLSSLSKL", "length": 206 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6I7R3-1", "protein_name": "Isochorismatase domain-containing protein 1", "gene_name": "Isoc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAEPSVAALAGGGVGAGAPSGGVPVLFCFSVFARPASVPHGAGYDVLIQKFLSLYGDQVDMHRKFVVQLFAEEWGQYVDLPKGFAVSERCKLRLVPLQIQLTTLGNLTPPSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIITEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVETHVCIQQTALELVGRGIEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVPLQLVADKDHPKFKEIQNLIKASAPESGLLSKV", "length": 297 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91V64-1", "protein_name": "Isochorismatase domain-containing protein 1", "gene_name": "Isoc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAEPSVAALAGGGVGAGAPSGGVPVLFCFSVFARPASVPHGAGYDVLIQKFLSLYGDQLDMHRKFVVQLFAEEWGQYVDLPKGFAVSERCKLRLVPLQIQLTTLGNLTPPSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIITEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVETHVCIQQTALELVGRGIEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNLIKASAPESGLLSKV", "length": 297 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96CN7-1", "protein_name": "Isochorismatase domain-containing protein 1", "gene_name": "ISOC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAEPAVLALPNSGAGGAGAPSGTVPVLFCFSVFARPSSVPHGAGYELLIQKFLSLYGDQIDMHRKFVVQLFAEEWGQYVDLPKGFAVSERCKVRLVPLQIQLTTLGNLTPSSTVFFCCDMQERFRPAIKYFGDIISVGQRLLQGARILGIPVIVTEQYPKGLGSTVQEIDLTGVKLVLPKTKFSMVLPEVEAALAEIPGVRSVVLFGVETHVCIQQTALELVGRGVEVHIVADATSSRSMMDRMFALERLARTGIIVTTSEAVLLQLVADKDHPKFKEIQNLIKASAPESGLLSKV", "length": 298 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9V9X3-1", "protein_name": "Isochorismatase-like domain-containing protein", "gene_name": "Dmel\\CG11333", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSKVRGPALYRLVPSKTLFMLCDVQEKFKPAIPLLSSLIENTTKLLAAGKVFQVPLLVTEQYPERLGKTVCELDIKHACANISKTMFSMLVEPVRKSMTDIFGGKPKTVVLFGLETHVCVEQTAFDLVNDEIDVWLVADCCASRHNQDRDLALERLRHIGCNIATSESVIFNLLGDKNNKSFKEITPLVKKISADMQLCRVSKN", "length": 204 }, "evidence": [ { "id": "F1RKJ9", "url": "https://omabrowser.org/oma/group/F1RKJ9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RKJ9", "url": "https://www.uniprot.org/uniprotkb/F1RKJ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RKJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ9" }, { "id": "PF26960", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26960" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ISOC1 N-terminal ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 99, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RKJ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ9" }, { "id": "PF00857", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00857" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Isochorismatase-like", "eco_id": "ECO_0000259", "start_pos": 114, "end_pos": 262, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RHJ6-1", "uniprot_ac": "F1RHJ6", "uniprot_id": "F1RHJ6_PIG", "mass": { "chemical_mass": 29574.0, "monoisotopic_mass": 29574.0 }, "refseq": {}, "gene_names": [ { "name": "TLCD3A", "type": "recommended", "evidence": [ { "id": "F1RHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" } ] } ], "protein_names": [ { "name": "TLC domain containing 3A", "type": "synonym", "evidence": [ { "id": "F1RHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RHJ6", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TLCD3A", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6", "locus": { "chromosome": "12", "start_pos": 47116565, "end_pos": 47125099, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017810", "url": "https://www.ensembl.org/id/ENSSSCG00000017810" } ] } } ], "crossref": [ { "id": "F1RHJ6", "url": "https://alphafold.ebi.ac.uk/entry/F1RHJ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017810", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017810", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524042", "url": "https://www.ncbi.nlm.nih.gov/gene/100524042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006634", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006634", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524042", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IYDRHWL", "url": "https://omabrowser.org/oma/group/IYDRHWL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RHJ6", "url": "https://www.orthodb.org/?gene=F1RHJ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13439", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13439", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13439:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13439:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03798", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03798", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZLU8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHJ6", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLPLAWGSLFFPGLFGLCTWGLRRARPAWTYNDCVMISTRLVSSVQAVLATGSGIIIIRSCSNVVTDRHWLAREYVWFLIPYMVYDSYAMYLCEWYRAGDQSSRQPLTIFRNFLSKNRLMITHHVVILCVLVPVAQRLRGELGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVNGILTLTTFFFCRILLFPFMYWSYGQQQGLSLLQVPSRIPFYCNVANAFLVAPQIYWFSLLCKKAARLFSAPSAKKDG", "length": 258, "header": "tr|F1RHJ6-1|F1RHJ6_PIG Isoform 1 of TLC domain containing 3A OS=Sus scrofa OX=9823 GN=TLCD3A PE=4 SV=3 CANONICAL=F1RHJ6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLU8/entry", "sequence": { "sequence": "MLLPLAWGSLFFPGLFGLCTWGLRRARPAWTYNDCVMISTRLVSSVQAVLATGSGIIIIRSCSNVVTDRHWLAREYVWFLIPYMVYDSYAMYLCEWYRAGDQSSRQPLTIFRNFLSKNRLMITHHVVILCVLVPVAQLKQQHTLLYKVNGILTLTTFFFCRILLFPFMYWSYGQQQGLSLLQVPSRIPFYCNVANAFLVAPQIYWFSLLCKKAARLFSAPSAKKDG", "length": 226, "header": "tr|A0A286ZLU8-1|F1RHJ6_PIG Computationally mapped isoform of TLC domain containing 3A OS=Sus scrofa OX=9823 GN=TLCD3A PE=4 SV=2 CANONICAL=F1RHJ6-1" }, "locus": { "chromosome": "12", "start_pos": 47124951, "end_pos": 47117940, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058531.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058531.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032434.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032434.2" } ] } }, { "isoform_ac": "A0A5G2QNX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX3/entry", "sequence": { "sequence": "MLLPLAWGSLFFPGLFGLCTWGLRRARPAWTYNDCVMISTRLVSSVQAVLATGSGIIIIRSCSNVVTDS", "length": 69, "header": "tr|A0A5G2QNX3-1|F1RHJ6_PIG Computationally mapped isoform of TLC domain containing 3A OS=Sus scrofa OX=9823 GN=TLCD3A PE=4 SV=1 CANONICAL=F1RHJ6-1" }, "locus": { "chromosome": "12", "start_pos": 47124951, "end_pos": 47118206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067662.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067662.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059992.1" } ] } }, { "isoform_ac": "F1RHJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6/entry", "sequence": { "sequence": "MLLPLAWGSLFFPGLFGLCTWGLRRARPAWTYNDCVMISTRLVSSVQAVLATGSGIIIIRSCSNVVTDRHWLAREYVWFLIPYMVYDSYAMYLCEWYRAGDQSSRQPLTIFRNFLSKNRLMITHHVVILCVLVPVAQRLRGELGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVNGILTLTTFFFCRILLFPFMYWSYGQQQGLSLLQVPSRIPFYCNVANAFLVAPQIYWFSLLCKKAARLFSAPSAKKDG", "length": 258, "header": "tr|F1RHJ6-1|F1RHJ6_PIG Isoform 1 of TLC domain containing 3A OS=Sus scrofa OX=9823 GN=TLCD3A PE=4 SV=3 CANONICAL=F1RHJ6-1" }, "locus": { "chromosome": "12", "start_pos": 47124951, "end_pos": 47117940, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019383.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019383.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018869.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018869.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524042", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZT44-1", "protein_name": "TLC domain containing 3A", "gene_name": "Tlcd3a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLTLASGALFFPGLFALSNWALRRLRPGWTDDDCLTVGTRLVSSVQAVLATGAGLTVITSCSNVVSDRHWLATEYVWFLIPYMIYDFYAMYLCEWCRTKDQNLRRVTIIRNFLIENRLMVTHHAVILFFLVPISQKLRGELGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVNGILTVTTFLFCRILLFPFMYWSYGQQKGLSLLQVPFNIPLHCNVANAILISPQLYWFSLLCKKAARLFDTAKAKKDG", "length": 257 }, "evidence": [ { "id": "F1RHJ6", "url": "https://omabrowser.org/oma/group/F1RHJ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AQ49-1", "protein_name": "TLC domain containing 3A", "gene_name": "FAM57A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWRTLAVASAFFPGLFAFCVRALRWAAPGWSVKDRVLLSGRLVSTVQATMATVSGLTVVLSCEDVVHDRHWLAVEYIWVLVPYMTYDIYVMYLCHWHKSREKGIAERKHSLTSVRSFLLQERLMVTHHLFILIVLTPVTQHFRGELGDFFVGCIFTAELSTPFVSLGKILMQLKMQDTLLHKVNGILILVTFFLCRILLFPFMYAAYGRQMGIPVYMVPFRIPLHCNIANASLIAPQLYWFTLICRKAVRLYGSSPADKSR", "length": 261 }, "evidence": [ { "id": "F1RHJ6", "url": "https://omabrowser.org/oma/group/F1RHJ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5ND56-1", "protein_name": "TLC domain-containing protein 3A", "gene_name": "Tlcd3a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLTLASGALFFPGLFALSIWALHRLRPGWTEDDCLTVGTRLVSSVQAVLATWAGLTVIISCKNVVSDRHWLATEYVWFLIPYMIYDFYAMYCCERCRTKSQKLTRTTIIRNFLIENRLMVTHHTVILLFLVPISQKLRGDLGDFFVGCIFTAELSTPFVSLARIMIQLKQQHTLLYKVNGILTVTTFLFCRILLFPFMYWSYGQQKGLSLLQVPFNIPLHCNMANAVLISPQLYWFSLLCKKAARLFDTAKAKKDG", "length": 257 }, "evidence": [ { "id": "F1RHJ6", "url": "https://omabrowser.org/oma/group/F1RHJ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TBR7-2", "protein_name": "TLC domain-containing protein 3A", "gene_name": "TLCD3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLTLAGGALFFPGLFALCTWALRRSQPGWSRTDCVMISTRLVSSVHAVLATGSGIVIIRSCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQNRAPSLTLRNFLSRNRLMITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVNGILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVANAFLVAPQIYWFCLLCRKAVRLFDTPQAKKDG", "length": 257 }, "evidence": [ { "id": "F1RHJ6", "url": "https://omabrowser.org/oma/group/F1RHJ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ6", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ6", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ6", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid homeostasis", "id": "GO:0055088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055088", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ6", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RHJ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 258, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RHJ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RHJ6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHJ6" }, { "id": "PS50922", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50922" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TLC", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 250, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RKK5-1", "uniprot_ac": "F1RKK5", "uniprot_id": "F1RKK5_PIG", "mass": { "chemical_mass": 46443.0, "monoisotopic_mass": 46443.0 }, "refseq": { "ac": "XP_020940365", "name": "protein PRRC1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940365" }, "gene_names": [ { "name": "PRRC1", "type": "recommended", "evidence": [ { "id": "F1RKK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ] }, { "name": "PRRC1", "type": "synonym", "evidence": [ { "id": "XP_020940365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940365" } ] } ], "protein_names": [ { "name": "Protein PRRC1", "type": "recommended", "evidence": [ { "id": "F1RKK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKK5/entry#names_and_taxonomy" } ] }, { "name": "Proline-rich and coiled-coil-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1RKK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKK5/entry#names_and_taxonomy" } ] }, { "name": "protein PRRC1", "type": "synonym", "evidence": [ { "id": "XP_020940365", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940365" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRRC1", "url": "https://www.uniprot.org/uniprotkb/F1RKK5", "locus": { "chromosome": "2", "start_pos": 130494983, "end_pos": 130443617, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014252", "url": "https://www.ensembl.org/id/ENSSSCG00000014252" } ] } } ], "crossref": [ { "id": "F1RKK5", "url": "https://alphafold.ebi.ac.uk/entry/F1RKK5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014252", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014252", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515883", "url": "https://www.ncbi.nlm.nih.gov/gene/100515883", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026534", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026534", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515883", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515883", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ELFPDQW", "url": "https://omabrowser.org/oma/group/ELFPDQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RKK5", "url": "https://www.orthodb.org/?gene=F1RKK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23276", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23276", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23276:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23276:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940365", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940365", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QAZ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKK5-1", "url": "https://www.uniprot.org/uniprotkb/F1RKK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMEESGIETTPPGTPPPSSTGLVAAAAPSPSPSPLAATSSFSSPNVSSVQPLPPHAFSTPQPSLPSVRPAVPLPPFVPPSPVPSVPPLGTSVPPPVSPPTAAAFSSPPLSHFPPSTSAPNAPSPAPSAGPPTSGFSVGSAYDITRGHAGRAPQTPLMPSFSAPPVTGILPAPITQQAGLTSLAQGAGTTSAITFPEEQEDPRIGRGQDEASAGGLWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAIRDAFQEVFGLAVVIGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHDKQTAVSVENFIAELLPDKWFDIGCLIVEDPVHGIHLEAFTQATPVPLEFVQQAQSLTPQDYSLRWSGLLVTVGEVLEKSLLNVSRTDWHVTFTGMSRRQMIYSAAKAIAGMYKQRLPPRAM", "length": 447, "header": "tr|F1RKK5-1|F1RKK5_PIG Isoform 1 of Protein PRRC1 OS=Sus scrofa OX=9823 GN=PRRC1 PE=1 SV=3 CANONICAL=F1RKK5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ7/entry", "sequence": { "sequence": "MMEESGIETTPPGTPPPSSTGLVAAAAPSPSPSPLAATSSFSSPNVSSVQPLPPHAFSTPQPSLPSVRPAVPLPPFVPPSPVPSVPPLGTSVPPPVSPPTAAAFSSPPLSHFPPSTSAPNAPSPAPSAGPPTSGFSVGSAYDITRGHAGRAPQTPLMPSFSAPPVTGILPAPITQQAGLTSLAQGAGTTSAITFPEEQEDPRIGRGQDEASAGGLWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAIRDAFQEVFGLAVVIGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHDKQTAVSVENFIAELLPDKWFDIGCLIVEDPVHGIHLEAFTQATPVPLEFVQQVRVILFFFIMLQKTCNIVFKIRFFFGTMIYFLFCFTHLLFSFLFLLCCFSTALVFSSNLWKCHPLHNHSFLHCCVFMIVFATLRS", "length": 463, "header": "tr|A0A5G2QAZ7-1|A0A5G2QAZ7_PIG Computationally mapped isoform of Protein PRRC1 OS=Sus scrofa OX=9823 GN=PRRC1 PE=1 SV=1 CANONICAL=F1RKK5-1" }, "locus": { "chromosome": "2", "start_pos": 130473964, "end_pos": 130448669, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076599.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076599.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061602.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061602.1" } ] } }, { "isoform_ac": "A0A5G2QQN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN8/entry", "sequence": { "sequence": "MCPRPLFFLAATSSFSSPNVSSVQPLPPHAFSTPQPSLPSVRPAVPLPPFVPPSPVPSVPPLGTSVPPPVSPPTAAAFSSPPLSHFPPSTSAPNAPSPAPSAGPPTSGFSVGSAYDITRGHAGRAPQTPLMPSFSAPPVTGILPAPITQQAGLTSLAQGAGTTSAITFPEEQEDPRIGRGQDEASAGGLWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAIRDAFQEVFGLAVVIGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHDKQTAVSVENFIAELLPDKWFDIGCLIVEDPVHGIHLEAFTQATPVPLEFVQQAQSLTPQDYSLRWSGLLVTVGEVLEKSLLNVSRTDWHVTFTGMSRRQMIYSAAKAIAGMYKQRLPPRAM", "length": 421, "header": "tr|A0A5G2QQN8-1|F1RKK5_PIG Computationally mapped isoform of Protein PRRC1 OS=Sus scrofa OX=9823 GN=PRRC1 PE=1 SV=1 CANONICAL=F1RKK5-1" }, "locus": { "chromosome": "2", "start_pos": 130491914, "end_pos": 130449793, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066491.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066491.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067053.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067053.1" } ] } }, { "isoform_ac": "F1RKK5-1", "url": "https://www.uniprot.org/uniprotkb/F1RKK5/entry", "sequence": { "sequence": "MMEESGIETTPPGTPPPSSTGLVAAAAPSPSPSPLAATSSFSSPNVSSVQPLPPHAFSTPQPSLPSVRPAVPLPPFVPPSPVPSVPPLGTSVPPPVSPPTAAAFSSPPLSHFPPSTSAPNAPSPAPSAGPPTSGFSVGSAYDITRGHAGRAPQTPLMPSFSAPPVTGILPAPITQQAGLTSLAQGAGTTSAITFPEEQEDPRIGRGQDEASAGGLWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAIRDAFQEVFGLAVVIGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHDKQTAVSVENFIAELLPDKWFDIGCLIVEDPVHGIHLEAFTQATPVPLEFVQQAQSLTPQDYSLRWSGLLVTVGEVLEKSLLNVSRTDWHVTFTGMSRRQMIYSAAKAIAGMYKQRLPPRAM", "length": 447, "header": "tr|F1RKK5-1|F1RKK5_PIG Isoform 1 of Protein PRRC1 OS=Sus scrofa OX=9823 GN=PRRC1 PE=1 SV=3 CANONICAL=F1RKK5-1" }, "locus": { "chromosome": "2", "start_pos": 130491914, "end_pos": 130448669, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015573.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015573.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015161.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015161.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515883", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515883", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YIC2-1", "protein_name": "Proline rich coiled-coil 1", "gene_name": "PRRC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMEESGIEATPPGTPPPSTAGSTAASATPVSLALSSPLATPSMSSPAYSPPLPAAVAPLPPPVMTSATPSFVPSAAVSTIAPPLAPAPAPVTSSAFSTSLPQFSAPPPLSSTTGSGLSVPPTGPPISGFSLSSTYDITRGHAGRAPQSPLMPSYSAPPVTGVLADPITQQAPFSSPLASGTGSGSSITFPEEHEDPRVSAAQSGAPTGGLWGFIKGVAENPMVKSVLDKTKHSVESMITTLDPGMVPYIKTGGELDIVVTSNKEVKVAAIRDAFQEVFGMAVVTGEAAQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHEKQPAVSVESFIEELLPDKWFDIGCLIIEDPVHGIHLEAFTQATPVPLQYVQQAKSLTPQDYNLRWSGLLVTVGEVIEKNLLNISRTDWHAVFTGMSRRQMIYSTAKALAGMYKQHLPPRTV", "length": 442 }, "evidence": [ { "id": "F1RKK5", "url": "https://omabrowser.org/oma/group/F1RKK5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3T1I4-1", "protein_name": "Protein PRRC1", "gene_name": "Prrc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMEESGIETTPPGTPPPHSAGLAAVPSTEAHLAVTSSFSSPNTSGMETVPPHSHSTPQPSLPPVQPSAPPPFVPLSPAPSTPLSGTSVPPSVSPSPATAFSGPPLSHFPPATSASGALLSAPPSGPPISGFSVGTTYDITRGHAGRAPQTPLMPSFSAPPVTGILPAPITQQASMTSLAQGPGTTSAITFPEEQEDPRISRGQDDAPAGGIWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRSGTIHEKQTAVSVENFIAELLPDKWFDIGCLVVEDPVHGIRLEAFTQATPVPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVTRTDWHLAFTGMSRRQMIYSAAKALAGMYKQRLPPRPL", "length": 443 }, "evidence": [ { "id": "F1RKK5", "url": "https://omabrowser.org/oma/group/F1RKK5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UPH1-1", "protein_name": "Protein PRRC1", "gene_name": "Prrc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEESGIETTPPGTPPLHPAGLAAVPSTEAHSAATSSFSSPNVSGMESLPPHVYSTPQPSLPPVQPSAPPPFVSMSPAPSVPLSGTSVPPSVSPSPATAFSGPPMSHFPPATSASGALLSAPPSGPPISGFSVGTTYDITRGHAGRAPQTPLMPSFSAPPVTGILPAPITQQASMTSLAQGPGTTSAITFPEEQEDPRINRGQDDAPAGGIWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRSGAIHEKQTAVSVENFIAELLPDKWFDIGCLVVEDPVHGIRLEAFTQATPVPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHLAFTGMSRRQMIYSAAKAVAGMYKQRLPPRPM", "length": 443 }, "evidence": [ { "id": "F1RKK5", "url": "https://omabrowser.org/oma/group/F1RKK5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XJA3-1", "protein_name": "Protein PRRC1", "gene_name": "prrc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMEESGIESTPPATPPPPSTVVASPPPLTSGATRPQTVPSPSGISAFTPGDFSSPVPSVALTSTLPPMQSSVPPLPLSSISSPLGLSGPYGIPSASFASPAAGPPLSTGPPLGPVLSAPPMGPPTTGFSVSGGYDITRGHAGRTPQTPLMPSFSSASPMPGIVTNPMMQQPVSGGLDVSSPITFPEDVEDPRVTPDSNAPGGLWGFIKGVAGNPMVKTVLDKTKHSVESMITTLDPGMAPYIKSGGDVDIVVTSDKEVKVAAVRDAFQEVFGLAMVTGEAGQSNIAPQPVGYAAGVKGAQERIDSLRRAAVIHEKQPVVSVENFIAELFPDKWFDIGCLILDDPGYGIHIETFTQATPVALEHVQQAQSLTPPDYNLRWSGLLVTVGEVLERNVPNVSRTDWHQAFTGMSRRQMIYSAAKALAGMYKLRLPSRTV", "length": 435 }, "evidence": [ { "id": "F1RKK5", "url": "https://omabrowser.org/oma/group/F1RKK5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96M27-1", "protein_name": "Protein PRRC1", "gene_name": "PRRC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMEESGIETTPPGTPPPNPAGLAATAMSSTPVPLAATSSFSSPNVSSMESFPPLAYSTPQPPLPPVRPSAPLPFVPPPAVPSVPPLVTSMPPPVSPSTAAAFGNPPVSHFPPSTSAPNTLLPAPPSGPPISGFSVGSTYDITRGHAGRAPQTPLMPSFSAPSGTGLLPTPITQQASLTSLAQGTGTTSAITFPEEQEDPRITRGQDEASAGGIWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFGLAVVVGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRTGVIHEKQTAVSVENFIAELLPDKWFDIGCLVVEDPVHGIHLETFTQATPVPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHMAFTGMSRRQMIYSAARAIAGMYKQRLPPRTV", "length": 445 }, "evidence": [ { "id": "F1RKK5", "url": "https://omabrowser.org/oma/group/F1RKK5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase A regulatory subunit binding", "id": "GO:0034237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034237", "evidence": [ { "database": "UniProtKB", "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "epithelial structure maintenance", "id": "GO:0010669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010669", "evidence": [ { "database": "UniProtKB", "id": "F1RKK5", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RKK5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 447, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RKK5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RKK5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RKK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKK5" }, { "id": "PF01931", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01931" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Non-canonical purine NTP phosphatase/PRRC1", "eco_id": "ECO_0000259", "start_pos": 262, "end_pos": 378, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 408, "end_pos": 410 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIS7-1", "uniprot_ac": "F1RIS7", "uniprot_id": "F1RIS7_PIG", "mass": { "chemical_mass": 51373.0, "monoisotopic_mass": 51373.0 }, "refseq": {}, "gene_names": [ { "name": "RUSF1", "type": "recommended", "evidence": [ { "id": "F1RIS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS7" } ] } ], "protein_names": [ { "name": "RUS family member 1", "type": "synonym", "evidence": [ { "id": "F1RIS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIS7", "url": "https://www.uniprot.org/uniprotkb/F1RIS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RUSF1", "url": "https://www.uniprot.org/uniprotkb/F1RIS7", "locus": { "chromosome": "3", "start_pos": 17082625, "end_pos": 17065818, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007753", "url": "https://www.ensembl.org/id/ENSSSCG00000007753" } ] } } ], "crossref": [ { "id": "F1RIS7", "url": "https://alphafold.ebi.ac.uk/entry/F1RIS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007753", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007753", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VAVQWII", "url": "https://omabrowser.org/oma/group/VAVQWII/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIS7", "url": "https://www.orthodb.org/?gene=F1RIS7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12770", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12770", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12770:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12770:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIS7", "url": "https://www.uniprot.org/uniprotkb/F1RIS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIS7-1", "url": "https://www.uniprot.org/uniprotkb/F1RIS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADVARREAPLCSEQFGSGTARGCRAAADGTLQWEAWGKRWWGFSGAFTAKPGERDGDGGVAPGTASPPLSRLLAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATHAVLLGIGVGNAKASVSAATATWLVKDSTGMLGRIVFAWWMGSKMDCNAKQWRLFADILNDVAMFLEIVAPIFPLCFTVTVCISNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDGSQETLVGLAGLLVSLLMLPLVSDRPSLSLCCFFFLTALHIYANYRAVRALVIETLNEGRLWLVLKHFLQTQEVLGPTAANRMEPLWTGFWPSLFLSLGAPLHRLTSSVLELQQLVEGHREPYLLRWDQPRNQVQVVLSPMAGPETILRAATHGLLLGALRGDGPLPEELDKLRNRVRAGPEKESWVIVRDMHHVLDKLFPKFLKGLQDAGWRTEKHQLEVDEWRATWLPCPEKKVL", "length": 468, "header": "tr|F1RIS7-1|F1RIS7_PIG Isoform 1 of RUS family member 1 OS=Sus scrofa OX=9823 GN=RUSF1 PE=1 SV=3 CANONICAL=F1RIS7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY6/entry", "sequence": { "sequence": "ADVARREAPLCSEQFGSGTARGCRAAADGTLQWEGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATHAVLLGIGVGNAKASVSAATATWLVKDSTGMLGRIVFAWWMGSKMDCNAKQWRLFADILNDVAMFLEIVAPIFPLCFTVTVCISNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDGSQETLVGLAGLLVSLLMLPLVSDRPSLSLCCFFFLTALHIYANYRAVRALVIETLNEGRLWLVLKHFLQTQEVLGPTAANRMEPLWTGFWPSLFLSLGAPLHRLTSSVLELQQLVEGHREPYLLRWDQPRNQVQVVLSPMAGPETILRAATHGLLLGALRGDGPLPEELDKLRNRVRAGPEKESWVIVRDMHHVLDKLFPKFLKGLQDAGWRTEKHQLEVDEWRATWLPCPEKKVL", "length": 422, "header": "tr|A0A5G2QQY6-1|F1RIS7_PIG Computationally mapped isoform of RUS family member 1 OS=Sus scrofa OX=9823 GN=RUSF1 PE=1 SV=1 CANONICAL=F1RIS7-1" }, "locus": { "chromosome": "3", "start_pos": 17081069, "end_pos": 17065838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069229.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069229.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067154.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067154.1" } ] } }, { "isoform_ac": "A0A5G2QZ28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ28/entry", "sequence": { "sequence": "MADVARREAPLCSEQFGSGTARGCRAAADGTLQWEAWGKRWWGFSGAFTAKPGERDGDGGVAPGTASPPLSRLLAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATHAVLLGIGVGNAKASVSAATATWLVKGELVANQPVLPNRSKMDCNAKQWRLFADILNDVAMFLEIVAPIFPLCFTVTVCISNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDGSQETLVGLAGLLVSLLMLPLVSDRPSLSLCCFFFLTALHIYANYRAVRALVIETLNEGRLWLVLKHFLQTQEVLGPTAANRMEPLWTGFWPSLFLSLGAPLHRLTSSVLELQQLVEGHREPYLLRWDQPRNQVQVVLSPMAGPETILRAATHGLLLGALRGDGPLPEELDKLRNRVRAGPEKESWVIVRDMHHVLDKLFPKFLKGLQDAGWRTEKHQLEVDEWRATWLPCPEKKVL", "length": 465, "header": "tr|A0A5G2QZ28-1|F1RIS7_PIG Computationally mapped isoform of RUS family member 1 OS=Sus scrofa OX=9823 GN=RUSF1 PE=1 SV=1 CANONICAL=F1RIS7-1" }, "locus": { "chromosome": "3", "start_pos": 17081069, "end_pos": 17065835, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090046.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090046.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070151.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070151.1" } ] } }, { "isoform_ac": "F1RIS7-1", "url": "https://www.uniprot.org/uniprotkb/F1RIS7/entry", "sequence": { "sequence": "MADVARREAPLCSEQFGSGTARGCRAAADGTLQWEAWGKRWWGFSGAFTAKPGERDGDGGVAPGTASPPLSRLLAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATHAVLLGIGVGNAKASVSAATATWLVKDSTGMLGRIVFAWWMGSKMDCNAKQWRLFADILNDVAMFLEIVAPIFPLCFTVTVCISNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDGSQETLVGLAGLLVSLLMLPLVSDRPSLSLCCFFFLTALHIYANYRAVRALVIETLNEGRLWLVLKHFLQTQEVLGPTAANRMEPLWTGFWPSLFLSLGAPLHRLTSSVLELQQLVEGHREPYLLRWDQPRNQVQVVLSPMAGPETILRAATHGLLLGALRGDGPLPEELDKLRNRVRAGPEKESWVIVRDMHHVLDKLFPKFLKGLQDAGWRTEKHQLEVDEWRATWLPCPEKKVL", "length": 468, "header": "tr|F1RIS7-1|F1RIS7_PIG Isoform 1 of RUS family member 1 OS=Sus scrofa OX=9823 GN=RUSF1 PE=1 SV=3 CANONICAL=F1RIS7-1" }, "locus": { "chromosome": "3", "start_pos": 17081069, "end_pos": 17065835, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008500.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008500.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008281.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008281.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 309, "start_aa": "Thr", "end_pos": 309, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr309", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQY6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X8J2-1", "protein_name": "RUS family member 1", "gene_name": "LOC121108155", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAELSGPTPPCRKGALRRAAERVLLPSGFPHSVSPDYLQYQCWDSAQALCSSLSGIIATRAVFEAVGVGDGAATPMGATLTWLLRDGVGMVTRIAFASIQGSALDCEAKQWRLAADVINDAALLLELSAPAWPGAAPLVLAGAAAARSVVGVAGGATRAAIAVHQARRDNAAEVAAKDGSQETVVNALGLLLALLLLPVLEGRPWLTWLLVLLLTAAHLGANMAAVRSLCIPTLNRPRLRLALSGALRGLSGALRGPTDPKSPTPNKGGVTVAVPTPREVNPKEPLLPGFSSRLRLRLGAPKQSLVGSEAEFRKAVECGSPDYIIVLRPSQGWVGVGLRDGAPPDAPLRGCAHALLLEELLGADLPPMAPMGAALRPLQQRLRRCPPGSVPWATLAEISRLWDTLGPAFLRGLEDAGWSTRRHQLAADEWRLQWAGPRPESHAHPSLTTPT", "length": 451 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AC58IT11-1", "protein_name": "RUS family member 1 isoform X1", "gene_name": "rusf1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYMQPETTMVEMEESEGVIATERYGSQESWKYLLKEGKVMRRKDAVNGGLAANSVSGVFKSVFLPQGYPESVSEDYLQYQLWDTVQAFSSSLSGTLATQASLRGVGVGNQEATVAAATITWLLRDGTGMLGRILFAWLKGSKLDSEAKKWRLFADILNDVAMFIEIAAPHFPPFFTIIVCIAGIFKSIVGVAGGATRAALTVHQARRNNMADISAKDGSQETLVNLAGLLVSLALIPLVTDNPLLTFILFYLFTVLHLFANYKAVRSVVMETLNEARLSIVLHQYLLHGQVLSPAEANQREPVFLSFRRTVPIKLGVRLGDLIHEPGDLQLALKNNSKPYLIGIKNGAVCVCLGSDASVDDEIKAVCQALCVSAVLHNESPLPAVLQQLSNTKDPWALISQSHKMIDEIFQTFLKELDRAKWQTDRTLLDWNEWRVEWTKKRS", "length": 443 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3N1G1-1", "protein_name": "RUS family member 1", "gene_name": "RUSF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADVLCSEQFGSGAARGCRAAPDGSLQWEAWGRRWWGFSGAFTAKPGGRDGGGGVAPGTASPPFSRLLAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATHAVLLGIGVGDAKASVSAATATWLVKDSTGMLGRIVFAWWMGSKMDCNAKQWRLFADILNDIAMFLEIMAPILPFCFTITVCISNLAKCLVGVAGGATRAALTMHQARRNNMADVSAKDGSQETLVNLAGLLVSLLMLPLVSDSPSLSLGCFFFLTALHIYANYRAVRALVIETLNEQRLWLVLRHFLQRGEVLGPTSANQMEPLWTGFWSSVSLSLGAPLHRVTSSVSELQQLVEGHQEPYLLRWDQSRNQVQVVLSQMAGPKAILRAATHGLVLGALRGDGPLPEELEELRNQAQAGPEKESWVVVRETHQVLDKLFPKFLKGLQDAGWSTEKHQLEVDEWRATWLLCPEKKVL", "length": 462 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q499P8-1", "protein_name": "RUS family member 1", "gene_name": "Rusf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADTASLRAPLCTEQFGSGAPRSCSAAADGSLQWDRAQRWGWFSRASITKPGQHEGGGRGPWAALTTLSGLRSVLLPQGFPDSVSPDYLQYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIIFAWWKGSKLDCNAKQWRLFADILNDTAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDCLSLSLGCFILLTALHIYANYRAVRALVLETLNESRLQLVLKHFLQRGEVLEPASANQMEPLWTGFWPSLSLSLGVPLHHLVSSVSELKQLVEGHQEPYLLCWNQSQNQVQVALSQVAGPETVLRAATHGLILGALQEDGPLPGELAELRDMVQAGPKNESWILVRETHQVLDTLFPKFLKGLQAAGWKTEKHHLEVDEWRATWPLSPEKKVL", "length": 466 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q84JB8-1", "protein_name": "Protein root UVB sensitive 3", "gene_name": "RUS3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MREEQVSDCGSITLEEWNGSSSTKLFKTATITASSSLSIQRSANRFNHVWRRVLQAFVPEGFPGSVTPDYVGFQLWDTLQGLSTYTKMMLSTQALLSAIGVGEKSATVIGATFQWFLRDFTGMLGGILFTFYQGSNLDSNAKMWRLVADLMNDIGMLMDLLSPLFPSAFIVVVCLGSLSRSFTGVASGATRAALTQHFALQDNAADISAKEGSQETMATMMGMSLGMLLARFTSGNPMAIWLSFLSLTVFHMYANYRAVRCLVLNSLNFERSSILLTHFIQTGQVLSPEQVSSMEGVLPLWATSLRSTNSKPLHKRVQLGVRVSSLPRLDMLQLLNGVGASSYKNAKYLLAHIKGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEAWIDKHYDELLHKLRSGGWKTERLLSPSITWRANWISHTSAAKFD", "length": 440 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91W34-1", "protein_name": "RUS family member 1", "gene_name": "Rusf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADAASLRAPLCTEQFGSGAPRGCSAAADGSLQWDGARRWGWLSRAPIAKPGQHAGGGGGPWAALTALSGLRSVLLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLQGLGVGNAKASVSAATSTWLVKDSTGMLGRIILAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPMYPIFFTMTVSTSNLAKCIVGVAGGATRAALTMHQARRNNMADVSAKDSSQETVVNLAGLLVSLLMLPLVSDCPSLSLGCFVLLTALHIYANYRAVRALVLETLNESRLQLVLEHFLQRGEVLEPASANQMEPLWTGFWPSLSLSLGVPLHHLVSSVSELKQLVEGHHEPYLLCWNKSRNQVQVALSQEAGPETVLRAATHGLILGALQEDGPLPGELAELRHQVQADPKKESWILVRETHQVLDTLFPKFLKGLQAAGWKTEKHHLEVDEWRATWPLSPEKKVL", "length": 466 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96GQ5-1", "protein_name": "RUS family member 1", "gene_name": "RUSF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADDAGLETPLCSEQFGSGEARGCRAAADGSLQWEVGGWRWWGLSRAFTVKPEGRDAGEVGASGAPSPPLSGLQAVFLPQGFPDSVSPDYLPYQLWDSVQAFASSLSGSLATQAVLLGIGVGNAKATVSAATATWLVKDSTGMLGRIVFAWWKGSKLDCNAKQWRLFADILNDVAMFLEIMAPVYPICFTMTVSTSNLAKCIVSVAGGATRAALTVHQARRNNMADVSAKDSSQETLVNLAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHYLQRGEVLDPTAANRMEPLWTGFWPAPSLSLGVPLHRLVSSVFELQQLVEGHQESYLLCWDQSQNQVQVVLNQKAGPKTILRAATHGLMLGALQGDGPLPAELEELRNRVRAGPKKESWVVVKETHEVLDMLFPKFLKGLQDAGWKTEKHQLEVDEWRATWLLSPEKKVL", "length": 468 }, "evidence": [ { "id": "F1RIS7", "url": "https://omabrowser.org/oma/group/F1RIS7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RIS7", "url": "https://www.uniprot.org/uniprotkb/F1RIS7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIS7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 468, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RIS7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RIS7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS7" }, { "id": "PF04884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein root UVB sensitive/RUS", "eco_id": "ECO_0000259", "start_pos": 69, "end_pos": 302, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RIS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS7" }, { "id": "PF24160", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24160" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Root UVB sensitive protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 304, "end_pos": 459, "start_aa": "Glu", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 309 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMV8-1", "uniprot_ac": "F1RMV8", "uniprot_id": "F1RMV8_PIG", "mass": { "chemical_mass": 42767.0, "monoisotopic_mass": 42767.0 }, "refseq": { "ac": "XP_020950139", "name": "cell adhesion molecule 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950139" }, "gene_names": [ { "name": "CADM4", "type": "recommended", "evidence": [ { "id": "F1RMV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV8" } ] }, { "name": "CADM4", "type": "synonym", "evidence": [ { "id": "XP_020950139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950139" } ] } ], "protein_names": [ { "name": "Cell adhesion molecule 4", "type": "recommended", "evidence": [ { "id": "F1RMV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV8/entry#names_and_taxonomy" } ] }, { "name": "Immunoglobulin superfamily member 4C", "type": "synonym", "evidence": [ { "id": "F1RMV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV8/entry#names_and_taxonomy" } ] }, { "name": "Nectin-like protein 4", "type": "synonym", "evidence": [ { "id": "F1RMV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV8/entry#names_and_taxonomy" } ] }, { "name": "cell adhesion molecule 4", "type": "synonym", "evidence": [ { "id": "XP_020950139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950139" } ] } ], "function": [ { "annotation": "Involved in the cell-cell adhesion. Has calcium- and magnesium-independent cell-cell adhesion activity. May have tumor-suppressor activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW56", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW56#function" }, { "database": "UniProtKB", "id": "ARBA00055166", "url": "https://www.uniprot.org/uniprotkb/ARBA00055166#function" }, { "database": "UniProtKB", "id": "F1RMV8", "url": "https://www.uniprot.org/uniprotkb/F1RMV8#function" }, { "database": "UniProtKB", "id": "A0A5G2QR29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR29#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMV8", "url": "https://www.uniprot.org/uniprotkb/F1RMV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CADM4", "url": "https://www.uniprot.org/uniprotkb/F1RMV8", "locus": { "chromosome": "6", "start_pos": 50462450, "end_pos": 50478383, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003061", "url": "https://www.ensembl.org/id/ENSSSCG00000003061" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003061", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003061", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05885", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05885", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523382", "url": "https://www.ncbi.nlm.nih.gov/gene/100523382", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": 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"https://www.uniprot.org/uniprotkb/F1RMV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPIVEVREQAVEGGEVELSCLVPRSRPAAILRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI", "length": 388, "header": "tr|F1RMV8-1|F1RMV8_PIG Isoform 1 of Cell adhesion molecule 4 OS=Sus scrofa OX=9823 GN=CADM4 PE=1 SV=5 CANONICAL=F1RMV8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR29-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR29/entry", "sequence": { "sequence": "MLSVHGSWWGRVISFPVSLSSGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPIVEVREQAVEGGEVELSCLVPRSRPAAILRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI", "length": 390, "header": "tr|A0A5G2QR29-1|F1RMV8_PIG Computationally mapped isoform of Cell adhesion molecule 4 OS=Sus scrofa OX=9823 GN=CADM4 PE=1 SV=1 CANONICAL=F1RMV8-1" }, "locus": { "chromosome": "6", "start_pos": 50468239, "end_pos": 50463378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071678.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071678.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066507.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066507.1" } ] } }, { "isoform_ac": "A0A5G2QW56-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW56/entry", "sequence": { "sequence": "MRGEGKGLEVWMGSSGREQRLNGTPQQVSFPVSLSSGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPIVEVREQAVEGGEVELSCLVPRSRPAAILRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI", "length": 405, "header": "tr|A0A5G2QW56-1|A0A5G2QW56_PIG Computationally mapped isoform of Cell adhesion molecule 4 OS=Sus scrofa OX=9823 GN=CADM4 PE=1 SV=1 CANONICAL=F1RMV8-1" }, "locus": { "chromosome": "6", "start_pos": 50467450, "end_pos": 50463378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076347.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076347.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069101.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069101.1" } ] } }, { "isoform_ac": "F1RMV8-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV8/entry", "sequence": { "sequence": "MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPIVEVREQAVEGGEVELSCLVPRSRPAAILRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI", "length": 388, "header": "tr|F1RMV8-1|F1RMV8_PIG Isoform 1 of Cell adhesion molecule 4 OS=Sus scrofa OX=9823 GN=CADM4 PE=1 SV=5 CANONICAL=F1RMV8-1" }, "locus": { "chromosome": "6", "start_pos": 50478352, "end_pos": 50463378, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003398.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003398.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003315.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003315.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR29", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523382", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523382", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q1WIM1-1", "protein_name": "Cell adhesion molecule 4", "gene_name": "Cadm4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRARRFQWPLLLLWAAAAGPGTAQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAAVLRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEALGETLTLPGLVSADNGTYTCEAANKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI", "length": 388 }, "evidence": [ { "id": "F1RMV8", "url": "https://omabrowser.org/oma/group/F1RMV8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NFZ8-1", "protein_name": "Cell adhesion molecule 4", "gene_name": "CADM4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRARRFQWPLLLLWAAAAGPGAGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAATLRWYRDRKELKGVSSSQENGKVWSVASTVRFRVDRKDDGGIIICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEASNKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEEFFI", "length": 388 }, "evidence": [ { "id": "F1RMV8", "url": "https://omabrowser.org/oma/group/F1RMV8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R464-1", "protein_name": "Cell adhesion molecule 4", "gene_name": "Cadm4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRARRFQWPLLLLWAAAAGPGTGQEVQTENVTVAEGGVAEITCRLHQYDGSIVVIQNPARQTLFFNGTRALKDERFQLEEFSPRRVRIRLSDARLEDEGGYFCQLYTEDTHHQIATLTVLVAPENPVVEVREQAVEGGEVELSCLVPRSRPAAVLRWYRDRKELKGVSSGQENGKVWSVASTVRFRVDRKDDGGIVICEAQNQALPSGHSKQTQYVLDVQYSPTARIHASQAVVREGDTLVLTCAVTGNPRPNQIRWNRGNESLPERAEAVGETLTLPGLVSADNGTYTCEAANKHGHARALYVLVVYDPGAVVEAQTSVPYAIVGGILALLVFLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGGDGHKRKEEFFI", "length": 388 }, "evidence": [ { "id": "F1RMV8", "url": "https://omabrowser.org/oma/group/F1RMV8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1RMV8", "url": "https://www.uniprot.org/uniprotkb/F1RMV8" } ], "pmid": "" }, { "name": "regulation of wound healing", "id": "GO:0061041", "url": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ] }, { "name": "ITGBL1", "type": "synonym", "evidence": [ { "id": "XP_005668583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668583" } ] } ], "protein_names": [ { "name": "Integrin beta-like protein 1", "type": "recommended", "evidence": [ { "id": "F1RP09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RP09/entry#names_and_taxonomy" } ] }, { "name": "integrin beta-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_005668583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668583" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ITGBL1", "url": "https://www.uniprot.org/uniprotkb/F1RP09", "locus": { "chromosome": "11", "start_pos": 70246968, "end_pos": 70042232, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009526", "url": "https://www.ensembl.org/id/ENSSSCG00000009526" } ] } } ], "crossref": [ { "id": "F1RP09", "url": "https://alphafold.ebi.ac.uk/entry/F1RP09", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009526", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009526", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525532", "url": "https://www.ncbi.nlm.nih.gov/gene/100525532", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525532", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525532", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGNDCKK", "url": "https://omabrowser.org/oma/group/CGNDCKK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RP09", "url": "https://www.orthodb.org/?gene=F1RP09", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10082:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10082:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07974", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07974", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23105", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23105", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005668583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005668583", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AZY3", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSI3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP09-1", "url": "https://www.uniprot.org/uniprotkb/F1RP09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPAGFRNFLLLASSLLFAGLSAVPQSFSPSLRSGPGAACRLSRAESERRCRAPGQPPGGALCHGRGRCDCGVCICHVSEPGVYFGPLCECHEWVCETYDGSTCAGHGRCDCGKCLCDEGWSGDACQYPTKCDLTKKKSNQMCKNSQDVICSNAGTCHCGRCKCDNSDGNGLVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCQAGWHGDKCEFQCDITPWESKRRCTSPDGQVCSNRGICVCGECSCHDVDPTGDWGDVHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKVGWYGKKCEHPRSCPLTAEESLKKCQGSSALPCSGRGKCECGRCTCYPPGDSRVYGKTCECDNRRCEDLDGVVCGGHGSCSCGRCLCERGWFGKLCQHPRKCNMTEEQSKGLCESADGTLCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICNCGNCECWDGWNGNACEIWLGTEYP", "length": 494, "header": "tr|F1RP09-1|F1RP09_PIG Isoform 1 of Integrin beta-like protein 1 OS=Sus scrofa OX=9823 GN=ITGBL1 PE=4 SV=3 CANONICAL=F1RP09-1" }, "isoforms": [ { "isoform_ac": "A0A287AZY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZY3/entry", "sequence": { "sequence": "MRPAGFRNFLLLASSLLFAGLSAVPQSFSPSLRSGPGAACRLSRAESERRCRAPGQPPGGALCHGRGRCDCGVCICHVSEPGVYFGPLCECHEWVCETYDGSTCAGHGRCDCGKCLCDEGWSGDACQYPTKCDLTKKKSNQMCKNSQDVICSNAGHGKCYCGNCYCQAGWHGDKCEFQCDITPWESKRRCTSPDGQVCSNRGICVCGECSCHDVDPTGDWGDVHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKVGWYGKKCEHPRSCPLTAEESLKKCQGSSALPCSGRGKCECGRCTCYPPGDSRVYGKTCECDNRRCEDLDGVVCGGHGSCSCGRCLCERGWFGKLCQHPRKCNMTEEQSKGLCESADGTLCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICNCGNCECWDGWNGNACEIWLGTEYP", "length": 453, "header": "tr|A0A287AZY3-1|A0A287AZY3_PIG Computationally mapped isoform of Integrin beta-like protein 1 OS=Sus scrofa OX=9823 GN=ITGBL1 PE=4 SV=2 CANONICAL=F1RP09-1" }, "locus": { "chromosome": "11", "start_pos": 70246164, "end_pos": 70042435, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053988.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053988.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049730.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049730.2" } ] } }, { "isoform_ac": "A0A5G2QSI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSI3/entry", "sequence": { "sequence": "MRPAGFRNFLLLASSLLFAGLSAVPQSFSPSLRSGPGAACRLSRAESERRCRAPGQPPGGALCHGRGRCDCGVCICHVSEPGVYFGPLCECHEWVCETYDGSTCAGHGKCYCGNCYCQAGWHGDKCEFQCDITPWESKRRCTSPDGQVCSNRGICVCGECSCHDVDPTGDWGDVHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKVGWYGKKCEHPRSCPLTAEESLKKCQGSSALPCSGRGKCECGRCTCYPPGDSRVYGKTCECDNRRCEDLDGVVCGGHGSCSCGRCLCERGWFGKLCQHPRKCNMTEEQSKGLCESADGTLCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICNCGNCECWDGWNGNACEIWLGTEYP", "length": 404, "header": "tr|A0A5G2QSI3-1|F1RP09_PIG Computationally mapped isoform of Integrin beta-like protein 1 OS=Sus scrofa OX=9823 GN=ITGBL1 PE=4 SV=2 CANONICAL=F1RP09-1" }, "locus": { "chromosome": "11", "start_pos": 70246164, "end_pos": 70042435, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073822.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073822.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064962.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064962.2" } ] } }, { "isoform_ac": "F1RP09-1", "url": "https://www.uniprot.org/uniprotkb/F1RP09/entry", "sequence": { "sequence": "MRPAGFRNFLLLASSLLFAGLSAVPQSFSPSLRSGPGAACRLSRAESERRCRAPGQPPGGALCHGRGRCDCGVCICHVSEPGVYFGPLCECHEWVCETYDGSTCAGHGRCDCGKCLCDEGWSGDACQYPTKCDLTKKKSNQMCKNSQDVICSNAGTCHCGRCKCDNSDGNGLVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCQAGWHGDKCEFQCDITPWESKRRCTSPDGQVCSNRGICVCGECSCHDVDPTGDWGDVHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKVGWYGKKCEHPRSCPLTAEESLKKCQGSSALPCSGRGKCECGRCTCYPPGDSRVYGKTCECDNRRCEDLDGVVCGGHGSCSCGRCLCERGWFGKLCQHPRKCNMTEEQSKGLCESADGTLCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICNCGNCECWDGWNGNACEIWLGTEYP", "length": 494, "header": "tr|F1RP09-1|F1RP09_PIG Isoform 1 of Integrin beta-like protein 1 OS=Sus scrofa OX=9823 GN=ITGBL1 PE=4 SV=3 CANONICAL=F1RP09-1" }, "locus": { "chromosome": "11", "start_pos": 70246164, "end_pos": 70042435, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010444.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010444.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010173.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010173.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSI3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525532", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525532", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XPU9-1", "protein_name": "Integrin beta-like protein 1", "gene_name": "ITGBL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MHARGLLGLVLLMVSVGSVPSLRPATPPALRSSLGSPVLCLLPRAEAELRCRVPGGPLCSGRGRCDCGVCICQVTEAGKYYGPLCECQDWVCEIYDGKVCAGHGKCDCGKCKCDEGWYGEACQYPTTCNLTRKKSNEMCKNSQDIICSGAGTCQCGRCKCVNSGGSGLVYGKFCECDDRECIDDETEEICTGHGQCYCGNCYCEAGWHGDKCEFQCDITPWEIKKRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERNCKAVYDRYSDDFCSGHGQCNCGKCDCKEGWTGKKCEHPRSCPLSAEESVKKCKGNSNLPCSGRGKCECGQCTCFPPGDNRVYGKNCECDDRQCESADGNVCGGHGICSCGRCVCQEGWFGKLCQYSRKCNMTEEESRSLCESADGVLCSGKGSCHCGKCICSPQEWYISGDFCECDDRDCDKHDGLICTGNGVCNCGNCECWEGWNGNACEIWLGTEYP", "length": 490 }, "evidence": [ { "id": "F1RP09", "url": "https://omabrowser.org/oma/group/F1RP09/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BK10-1", "protein_name": "Integrin beta-like protein 1", "gene_name": "ITGBL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPAGLASVLLLVSSLLLPGGLSAVPQSFSPSLRSGPGAAACRLSRAESERRCRAPGQPPGGALCHGRGRCDCGVCICHVSEPGVYFGPLCECHEWVCETYDGSTCAGHGKCDCGRCKCDEGWFGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGNGLVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCQAGWHGDKCEFQCDITPWESKRRCTSPDGKVCSNRGICVCGECSCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKVGWYGKKCEHPRSCPLSTEESIRKCQGSATLPCSGRGKCECGKCTCYPPGDSKVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCEKGWFGTLCQHPRKCNLTEEQSNSLCESADGILCSGKGSCHCGKCLCSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLGTEYP", "length": 496 }, "evidence": [ { "id": "F1RP09", "url": "https://omabrowser.org/oma/group/F1RP09/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95965-1", "protein_name": "Integrin beta-like protein 1", "gene_name": "ITGBL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPPGFRNFLLLASSLLFAGLSAVPQSFSPSLRSWPGAACRLSRAESERRCRAPGQPPGAALCHGRGRCDCGVCICHVTEPGMFFGPLCECHEWVCETYDGSTCAGHGKCDCGKCKCDQGWYGDACQYPTNCDLTKKKSNQMCKNSQDIICSNAGTCHCGRCKCDNSDGSGLVYGKFCECDDRECIDDETEEICGGHGKCYCGNCYCKAGWHGDKCEFQCDITPWESKRRCTSPDGKICSNRGTCVCGECTCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCKAGWYGKKCEHPQSCTLSAEESIRKCQGSSDLPCSGRGKCECGKCTCYPPGDRRVYGKTCECDDRRCEDLDGVVCGGHGTCSCGRCVCERGWFGKLCQHPRKCNMTEEQSKNLCESADGILCSGKGSCHCGKCICSAEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLGSEYP", "length": 494 }, "evidence": [ { "id": "F1RP09", "url": "https://omabrowser.org/oma/group/F1RP09/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5PQQ8-1", "protein_name": "Integrin beta-like protein 1", "gene_name": "Itgbl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MHPPGFRNFLLLVSSLLFIGLSAAPQSFLPSLRSLSGAPCRLSRAESERRCRAPGQPPGSALCHDRGRCECGVCICHVTEPGTYFGPLCECHEWICETYDGKTCAGHGNCDCGKCKCDVGWSGEACQYPTKCDLTKKISNQMCKNSQDVICSNAGTCHCGRCKCDNSDGHGLIYGKFCECDDRECIDDETEEVCGGHGKCYCGNCYCEAGWHGDKCEFQCDITPWESKRRCTSPDGKVCSNRGTCVCGECSCHDVDPTGDWGDIHGDTCECDERDCRAVYDRYSDDFCSGHGQCNCGRCDCRAGWYGKKCEHPRNCPLSAEESTKKCQGSSDLPCSGRGRCECGRCTCYPPGDSRVYGKTCECDDRRCEDLDGVVCGGHGMCSCGRCVCEKGWFGKLCQHLRKCNMTEEQSRSLCESADGTLCSGKGSCHCGKCICSGEEWYISGEFCDCDDRDCDKHDGLICTGNGICSCGNCECWDGWNGNACEIWLGTEYP", "length": 494 }, "evidence": [ { "id": "F1RP09", "url": "https://omabrowser.org/oma/group/F1RP09/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" 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"integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "integrin-mediated signaling pathway", "id": "GO:0007229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007229", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" }, { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" }, { "name": "cell adhesion mediated by integrin", "id": "GO:0033627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033627", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" }, { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "F1RP09", "url": "https://www.uniprot.org/uniprotkb/F1RP09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RP09-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 494, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Promotes the activation of ARF through replacement of GDP with GTP.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ03", "url": "https://www.uniprot.org/uniprotkb/F1RJ03#function" }, { "database": "UniProtKB", "id": "ARBA00057199", "url": "https://www.uniprot.org/uniprotkb/ARBA00057199#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJ03", "url": "https://www.uniprot.org/uniprotkb/F1RJ03" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO8", "url": "https://www.uniprot.org/uniprotkb/F1RJ03", "locus": { "chromosome": "14", "start_pos": 15932174, "end_pos": 15896001, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009702", "url": "https://www.ensembl.org/id/ENSSSCG00000009702" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009702", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009702", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00171", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00171", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22088", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22088", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516833", "url": "https://www.ncbi.nlm.nih.gov/gene/100516833", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516833", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516833", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NANPHEG", "url": "https://omabrowser.org/oma/group/NANPHEG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJ03", "url": "https://www.orthodb.org/?gene=F1RJ03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF372", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF372", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132883", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132883", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QTQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ03", "url": "https://www.uniprot.org/uniprotkb/F1RJ03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ03-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQGLWRVVRNQQLQQEGYSEQGYLSREQSRRMAASSISNTSHRKQVQGGIDIYHLLKTRKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA", "length": 319, "header": "tr|F1RJ03-1|F1RJ03_PIG Isoform 1 of F-box only protein 8 OS=Sus scrofa OX=9823 GN=FBXO8 PE=4 SV=1 CANONICAL=F1RJ03-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTQ4/entry", "sequence": { "sequence": "MGQGLWRVVRNQQLQQEGYSEQGYLSREQSRRMAASSISNTSHRKQVQGGIDIYHLLKTRKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEVSEELECFIEDMLYDLVLSFYLAVPCSNLATCSLHGSSQDIYTAFYQT", "length": 200, "header": "tr|A0A5G2QTQ4-1|F1RJ03_PIG Computationally mapped isoform of F-box only protein 8 OS=Sus scrofa OX=9823 GN=FBXO8 PE=4 SV=1 CANONICAL=F1RJ03-1" }, "locus": { "chromosome": "14", "start_pos": 15911214, "end_pos": 15908264, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088979.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088979.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068311.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068311.1" } ] } }, { "isoform_ac": "F1RJ03-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ03/entry", "sequence": { "sequence": "MGQGLWRVVRNQQLQQEGYSEQGYLSREQSRRMAASSISNTSHRKQVQGGIDIYHLLKTRKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA", "length": 319, "header": "tr|F1RJ03-1|F1RJ03_PIG Isoform 1 of F-box only protein 8 OS=Sus scrofa OX=9823 GN=FBXO8 PE=4 SV=1 CANONICAL=F1RJ03-1" }, "locus": { "chromosome": "14", "start_pos": 15931696, "end_pos": 15908264, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010637.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010637.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010361.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010361.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516833", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516833", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HZR9-1", "protein_name": "F-box only protein 8", "gene_name": "Fbxo8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGQGLWRVARNQHLQQEAYSEPGYLSREQSRRVTSSNISHSSHRKQAQGGIDLYHLLKARKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPEEGVSYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA", "length": 319 }, "evidence": [ { "id": "F1RJ03", "url": "https://omabrowser.org/oma/group/F1RJ03/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5E9G6-1", "protein_name": "F-box only protein 8", "gene_name": "FBXO8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGQGLWRVARNQQLQQEGYGEQGYLSREQSRRVAASNMSHTSHRKHVQGGIDIYHLLKTRKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA", "length": 319 }, "evidence": [ { "id": "F1RJ03", "url": "https://omabrowser.org/oma/group/F1RJ03/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5M7U1-1", "protein_name": "F-box only protein 8", "gene_name": "Fbxo8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQGLWRVARNQHLQQEAYGETGYLSREQSRRVASSNISHTSHRKQAQGGIDIYHLLKARKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPEEGVSYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA", "length": 319 }, "evidence": [ { "id": "F1RJ03", "url": "https://omabrowser.org/oma/group/F1RJ03/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NRD0-1", "protein_name": "F-box only protein 8", "gene_name": "FBXO8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQGLWRVVRNQQLQQEGYSEQGYLTREQSRRMAASNISNTNHRKQVQGGIDIYHLLKARKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA", "length": 319 }, "evidence": [ { "id": "F1RJ03", "url": "https://omabrowser.org/oma/group/F1RJ03/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QZN3-1", "protein_name": "F-box only protein 8", "gene_name": "Fbxo8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK21", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK21-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJS3-1", "url": "https://www.uniprot.org/uniprotkb/F1RJS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 555, "header": "tr|F1RJS3-1|F1RJS3_PIG Isoform 1 of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=3 CANONICAL=F1RJS3-1" }, "isoforms": [ { "isoform_ac": "A0A287A929-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A929/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAGGSRDPLPGLFRRGPHISGAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 575, "header": "tr|A0A287A929-1|A0A287A929_PIG Computationally mapped isoform of Epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=1 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047293.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047293.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040448.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040448.2" } ] } }, { "isoform_ac": "A0A287AJ46-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ46/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 523, "header": "tr|A0A287AJ46-1|A0A287AJ46_PIG Computationally mapped isoform of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=2 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044441.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044441.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043910.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043910.2" } ] } }, { "isoform_ac": "A0A287BC11-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC11/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPTFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 531, "header": "tr|A0A287BC11-1|A0A287BC11_PIG Computationally mapped isoform of Epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=2 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044672.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044672.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054071.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054071.2" } ] } }, { "isoform_ac": "A0A287BED6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BED6/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 528, "header": "tr|A0A287BED6-1|A0A287BED6_PIG Computationally mapped isoform of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=3 SV=2 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058753.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058753.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054909.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054909.2" } ] } }, { "isoform_ac": "A0A5G2QTS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS6/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQVLVPPCLAMWSLPTHLCPPQPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 541, "header": "tr|A0A5G2QTS6-1|F1RJS3_PIG Computationally mapped isoform of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=1 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068512.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068512.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067559.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067559.1" } ] } }, { "isoform_ac": "A0A5G2QXG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXG3/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 372, "header": "tr|A0A5G2QXG3-1|F1RJS3_PIG Computationally mapped isoform of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=1 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072326.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072326.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062891.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062891.1" } ] } }, { "isoform_ac": "A0A8W4FK21-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK21/entry", "sequence": { "sequence": "WVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 493, "header": "tr|A0A8W4FK21-1|F1RJS3_PIG Computationally mapped isoform of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=1 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11248341, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101005.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101005.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079245.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079245.1" } ] } }, { "isoform_ac": "F1RJS3-1", "url": "https://www.uniprot.org/uniprotkb/F1RJS3/entry", "sequence": { "sequence": "MALRAAVFDLDGVLALPSITTSWARAEEKLALPRGFLNEAFKKGGQDGSVARVMTGEITFSQWVPFMEEDCRKCAEDSGIRLPENFSVKHIFDKALSAKKINYPMLQAALTLKKKGFSTCILTNNWLDDSAQRGSRAQLMCELRPHFDFLIESCRVGMAKPDPQIYKLMLDTLKAEPNEVVFLDDVGTHLKPVRDLGMATILVRDTDTALRELEKVTGVQLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCLCHGFPESWFSWRYQIPALAQAGFRVLAVDMKGYGESSAPPEIEEYSLEVLCKDMVTFLNKLGLSQAVFIGHDWGGVLVWNMALFYPERVRAVASLNTPFMPSNPNVSPMEIIKANPVFDYQLYFQEPGVAEAELEQNLDRTFKNFFRAHDETFLTTNRVRELGGLFVGTPEEPSLSRLVTEEDIQFYVQQFKKSGFRGPLNWYRNMERNWQWGCKGSGRKILIPALMVTAENDLVLHPKMSKHMENWIPNLKRGHIKDCGHWTQIDKPAELNRILIEWLETDARNPLVDSKL", "length": 555, "header": "tr|F1RJS3-1|F1RJS3_PIG Isoform 1 of Bifunctional epoxide hydrolase 2 OS=Sus scrofa OX=9823 GN=EPHX2 PE=1 SV=3 CANONICAL=F1RJS3-1" }, "locus": { "chromosome": "14", "start_pos": 11293015, "end_pos": 11217125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010599.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010599.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010323.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010323.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTS6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "response to toxic substance", "id": "GO:0009636", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009636", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "epoxide metabolic process", "id": "GO:0097176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097176", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "regulation of cholesterol metabolic process", "id": "GO:0090181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090181", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "cholesterol homeostasis", "id": "GO:0042632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042632", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "phospholipid dephosphorylation", "id": "GO:0046839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046839", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "stilbene catabolic process", "id": "GO:0046272", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046272", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "epoxide hydrolase activity", "id": "GO:0004301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004301", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity", "id": "GO:0033885", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033885", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "lysophosphatidic acid phosphatase activity", "id": "GO:0052642", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052642", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "toxic substance binding", "id": "GO:0015643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015643", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" }, { "name": "lipid phosphatase activity", "id": "GO:0042577", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042577", "evidence": [ { "database": "UniProtKB", "id": "F1RJS3", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16537", "name": "", "equation": "(9S,10S)-10-hydroxy-9-(phosphooxy)octadecanoate + H2O = (9S,10S)-9,10-dihydroxyoctadecanoate + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16537", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16537" } ] }, { "id": "19037", "name": "", "equation": "an epoxide + H2O = an ethanediol", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19037", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19037" } ] }, { "id": "53976", "name": "", "equation": "(14R,15S)-epoxy-(5Z,8Z,11Z)-eicosatrienoate + H2O = (14R,15R)-dihydroxy-(5Z,8Z,11Z)-eicosatrienoate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53976", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53976" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RJS3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 555, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RJS3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RJS3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RJS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJS3" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 259, "end_pos": 531, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 368, "end_pos": 370 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RNV9-1", "uniprot_ac": "F1RNV9", "uniprot_id": "F1RNV9_PIG", "mass": { "chemical_mass": 89493.0, "monoisotopic_mass": 89493.0 }, "refseq": { "ac": "XP_020940201", "name": "multiple C2 and transmembrane domain-containing protein 1 isoform X13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940201" }, "gene_names": [ { "name": "MCTP1", "type": "recommended", "evidence": [ { "id": "F1RNV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ] }, { "name": "MCTP1", "type": "synonym", "evidence": [ { "id": "XP_020940201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940201" } ] } ], "protein_names": [ { "name": "Multiple C2 and transmembrane domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1RNV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNV9/entry#names_and_taxonomy" } ] }, { "name": "multiple C2 and transmembrane domain-containing protein 1 isoform X13", "type": "synonym", "evidence": [ { "id": "XP_020940201", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940201" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MCTP1", "url": "https://www.uniprot.org/uniprotkb/F1RNV9", "locus": { "chromosome": "2", "start_pos": 101384910, "end_pos": 101920111, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025286", "url": "https://www.ensembl.org/id/ENSSSCG00000025286" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08376", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08376", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08377", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08377", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522480", "url": "https://www.ncbi.nlm.nih.gov/gene/100522480", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DCGPTLE", "url": "https://omabrowser.org/oma/group/DCGPTLE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45911:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45911:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940201", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940201", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QTX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R325", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R325", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R325-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R325-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4V5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GAL2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GAL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GAL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GAL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XHK1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XHK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XHK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XHK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNV9-1", "url": "https://www.uniprot.org/uniprotkb/F1RNV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFJ9", "url": "https://www.uniprot.org/uniprotkb/I3LFJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LFJ9-1", "url": "https://www.uniprot.org/uniprotkb/I3LFJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSFFWRTRGRPAFPIQGFCRAELQSAHYQNAHLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 777, "header": "tr|F1RNV9-1|F1RNV9_PIG Isoform 1 of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=4 CANONICAL=F1RNV9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTX2/entry", "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVTMLMRKSWKRSSKLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 691, "header": "tr|A0A5G2QTX2-1|F1RNV9_PIG Computationally mapped isoform of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=1 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101739171, "end_pos": 101386856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071369.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071369.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068298.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068298.1" } ] } }, { "isoform_ac": "A0A5G2R325-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R325/entry", "sequence": { "sequence": "MEPRASAAGSPEPAAASSSFQARLWKNLQLGVGKGKGGGSGRAGAPERRTADTPSPSPPLPGARREGLAGLGGAGSRWSGFKKRKQVLDRVFSSSQPNLCCSSPEPLEPRGAGRAEQGSTLRRRIREHLFPAGRGPVAAAGATPPGGRSPDSAPSSSSASSSLSSSPQPPPRGARAGDAGARREAPAAHLCHQKSSSLPGTACLEQLLEPPPPRTEPAPNPAEPRTPEKGEERSSSPKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSFFWRTRGRPAFPIQGFCRAELQSAHYQNAHLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 995, "header": "tr|A0A5G2R325-1|F1RNV9_PIG Computationally mapped isoform of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=1 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101920106, "end_pos": 101386856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090373.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090373.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070747.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070747.1" } ] } }, { "isoform_ac": "A0A5G2R4V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4V5/entry", "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSFFWRTRGRPAFPIQGFCRAELQSAHYQNAHLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVDLYRTFINV", "length": 599, "header": "tr|A0A5G2R4V5-1|F1RNV9_PIG Computationally mapped isoform of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=1 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101739171, "end_pos": 101546492, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072991.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072991.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069220.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069220.1" } ] } }, { "isoform_ac": "A0A8D1GAL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GAL2/entry", "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSFFWRLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 751, "header": "tr|A0A8D1GAL2-1|F1RNV9_PIG Computationally mapped isoform of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=1 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101739171, "end_pos": 101386856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043638.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043638.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045459.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045459.2" } ] } }, { "isoform_ac": "A0A8D1XHK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XHK1/entry", "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 718, "header": "tr|A0A8D1XHK1-1|F1RNV9_PIG Computationally mapped isoform of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=1 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101739171, "end_pos": 101386856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041368.1", "url": "https://www.ensembl.org/id/ENSSSCT00000041368.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033467.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033467.1" } ] } }, { "isoform_ac": "F1RNV9-1", "url": "https://www.uniprot.org/uniprotkb/F1RNV9/entry", "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSFFWRTRGRPAFPIQGFCRAELQSAHYQNAHLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 777, "header": "tr|F1RNV9-1|F1RNV9_PIG Isoform 1 of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=4 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101739171, "end_pos": 101386856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015473.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015473.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015063.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015063.4" } ] } }, { "isoform_ac": "I3LFJ9-1", "url": "https://www.uniprot.org/uniprotkb/I3LFJ9/entry", "sequence": { "sequence": "MLDSCKLKSACNLPVIYNKKIHTAGTSNADVPLADPGMYQLDITLKRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACLLVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGTILLSVILTPKEGEHRDVELSENEVVGSYFSVKSFFWRLQTQSLRLSDVHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIIDITAWDKDAGKRDDFIGRCQIDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSINSLEDQKEREEILRRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFSFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWASPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCISVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCAFTVILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPCKRKKNNLG", "length": 738, "header": "tr|I3LFJ9-1|F1RNV9_PIG Computationally mapped isoform of Multiple C2 and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MCTP1 PE=3 SV=2 CANONICAL=F1RNV9-1" }, "locus": { "chromosome": "2", "start_pos": 101739171, "end_pos": 101386856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025085.2", "url": "https://www.ensembl.org/id/ENSSSCT00000025085.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022841.2", "url": "https://www.ensembl.org/id/ENSSSCP00000022841.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 511, "start_aa": "Thr", "end_pos": 511, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr511", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTX2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A1ZBD6-1", "protein_name": "Multiple C2 and transmembrane domain-containing protein", "gene_name": "Mctp", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRIQYVDQVDQVELDQQQQPGSSSTVSGSTPPLQISPHGSPSLQQSQRLGKHLSKSASELNGHDCHLSESPHISPKRAKSAVAQQLAGVSSGGVASGVGVLQKTHGFFNNLRHRWSRAKSKDRLGRKSPSDFLEESTDYAADYSSEGSSVTHSPRHRSTTIGGSPLAREFRATAKMAQVIQRFGGSMEGRIDEHPENGSAGCSPPELSTQQQLEALQANELRRKREAQLRQFVFFQLRVHLKSGSDLVAMDKNGLSDPYVKFKVGGRLLHKSRTIHRDLNPVWDEVFIVPIEDPFQPIIVKVFDYDWGLQDDFMGSAKLDLTQLELGKAEDIHLQLCDSSGNGGSGLGEILINLTLWPRSQEDKEMHFQRNSKLAESSKRLKSQIWSSVVTILLVKAKDLPLAEDGSKLNDTHFKFRLGNEKYKSKSSWTERWLEQFDLHLFDEDQNLEIALWNRNTLYGKAIIDLSVFQRENTHGIWKPLEDCPGEVHLMLTISGTTALETISDLKAFKEDPREAQLLRERYKFLRCLQNLRDVGHLTVKVFGATGLAAADIGGKSDPFCVLELGNARLQTQTEYKTLTPNWNKIFTFNVKDITQVLEITVFDEDRDHRVEFLGKLVIPLLRIKSGVKRWYTLKDKNLCVRAKGNSPQIQLELTVVWSEIRAVCRALQPKEEKLIQQEAKFKRQLFLRNVNRLKEIIMDILDAARYVQSCFEWESPVRSSIAFVFWIVACVYGDLETVPLVLLLIILKNWLVRLITGTTDAAAHYDYEYDEDDDDDKEKEEKKSIKERLQAIQEVSQTVQNTIGYLASLGESTINTFNFSVPELTWLAVVLLLGAILVLHFVPLRWLLLFWGLMKFSRRLLRPNTIPNNELLDFLSRVPDNEEINQYRELPPSAPTDQTRNNPKKKLKGS", "length": 912 }, "evidence": [ { "id": "F1RNV9", "url": "https://omabrowser.org/oma/group/F1RNV9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "D4ABL6-1", "protein_name": "Multiple C2 and transmembrane domain-containing protein 1", "gene_name": "Mctp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPRGAAAGEPEPAVSPSFQARLWKNLQLGVGKGKGGGGGRAGGPERRTAATPTPSLPPPKTTQDVGSTGSRWSGFKKRKQVLDRVFSSSQPNLCCSSPEPLEPGGAGRAEQGSTLRRRLREHLLPVAKGSSTAAGTVGVTPPGGRSPDSAPSSSASSSLSSSPQPPPRGDRIRDEGTRRGSPEAHLCHQKSSSLPGTACLEQLLEPAPPPAEPARRPAEPQSLQKGEELDCSQKINPVETSNADVPLADPGMYQLDITLRRGQSLAARDRGGTSDPYVKFKIGRKEVFRSKIIHKNLNPVWEEKACVLIDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIILLSVILTPKEGEPRDVTMLMRKSWKRSSKFQTQSLRLSDQHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGVMDITAWDKDAGKRDDFIGRCQVDLSSLSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSVNSMEDHKEREEILKRYSPLRIFNNIKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLGRVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIHLEIDVIFNAVKASLRTLIPKERKYIEEENRLSKQLLLRNFIRTKRCVMVLVNAAYYVNSCFDWDSPPRSLAAFVLFLLVVWNFELYMIPLLLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDRDDKDGEKKGFINKIYAIQEVCVSVQNILDEAASLGERVKNTFNWTVPFLSWLAIIALCVFTAILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDHSHSPYKRKKNNLG", "length": 946 }, "evidence": [ { "id": "F1RNV9", "url": "https://omabrowser.org/oma/group/F1RNV9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9PV86-1", "protein_name": "Multiple C2 and transmembrane domain-containing protein 1", "gene_name": "Mctp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPRAATTGELVRAASPSFQARLWKNLQLGVGKGKGGGGGRAGGPEHRTAATPTPSPPPPGTTQDALAGVGSTGSRWSGFKKRKQVLDRVFSSSQPNLCCSSPEPLEPGGAGRAEQGSTLRRRLREHLLPVAKGSSTATGTGGVTPPGGRSPDSAPSSSSASSSLSSSPQPPPRGDRVRDESTRRGGPGVHLCHQKSSSLPGTACLEQLLEPAPPPAEPARGPAEPQALQKDIERDCSQKISTVGNSNADVPLADPGMYQLDITLRRGQSLAARDRGGTSDPYVKFKIGRKEVFRSKIIHKNLNPVWEEKACVLIDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRSTDVTLTLKDPHYPDHDLGIILLSVILTPKEGEHRDVTMLMRKSWKRSSKFQTQSLRLSDQHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGIMDITAWDKDAGKRDDFIGRCQVDLSSLSREQTHKLELHLEEGEGHLVLLVTLTASATVCISDLSVNSMEDQKEREEILKRYSPLRIFNNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLGRVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKERKYIEEENRLSKQLLLRNFIRTKRCVIVLVNAAYYVNSCFDWDSPPRSLAAFVLFLLIVWNFELYMIPLLLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDRDDKDGEKKGFINKIYAIQEVCVSVQNILDEVASLGERIKNTFNWTVPFLSWLAIVALCVFTAILYFIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDHSHSPYKRKKNNLG", "length": 951 }, "evidence": [ { "id": "F1RNV9", "url": "https://omabrowser.org/oma/group/F1RNV9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6DN14-1", "protein_name": "Multiple C2 and transmembrane domain-containing protein 1", "gene_name": "MCTP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPRAAAAGEPEPPAASSSFQARLWKNLQLGVGRSKGGGGGRAGGPERRTADTPSPSPPPPVGTGNAPARGSGAGSRWSGFKKRKQVLDRVFSSSQPNLCCSSPEPLEPGGAGRAEQGSTLRRRIREHLLPAVKGPAAASGAAGGTPPGGRSPDSAPSSSSASSSLSSSPQPPPRGDRARDEGARRQGPGAHLCHQKSSSLPGTACLEQLLEPPPPPAEPARSPAESRAPETGEEHGSSQKIINTAGTSNAEVPLADPGMYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWEEKACILVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLTLKDPHYPDHDLGIILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPALPVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIGRCQVDLSALSREQTHKLELQLEEGEGHLVLLVTLTASATVSISDLSVNSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLMAADVTGKSDPFCVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYDEDRDRSADFLGKVAIPLLSIQNGEQKAYVLKNKQLTGPTKGVIYLEIDVIFNAVKASLRTLIPKEQKYIEEENRLSKQLLLRNFIRMKRCVMVLVNAAYYVNSCFDWDSPPRSLAAFVLFLFVVWNFELYMIPLVLLLLLTWNYFLIISGKDNRQRDTVVEDMLEDEEEEDDKDDKDSEKKGFINKIYAIQEVCVSVQNILDEVASFGERIKNTFNWTVPFLSWLAIVALCVFTAILYCIPLRYIVLVWGINKFTKKLRSPYAIDNNELLDFLSRVPSDVQVVQYQELKPDPSHSPYKRKKNNLG", "length": 999 }, "evidence": [ { "id": "F1RNV9", "url": "https://omabrowser.org/oma/group/F1RNV9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9M2R0-1", "protein_name": "FT-interacting protein 3", "gene_name": "FTIP3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MQRPPPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFVKDDLIGRVVFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQALRTRVSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDRRFDHKPVNSRWYNLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTDCML", "length": 773 }, "evidence": [ { "id": "F1RNV9", "url": "https://omabrowser.org/oma/group/F1RNV9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of neurotransmitter secretion", "id": "GO:0046928", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046928", "evidence": [ { "database": "UniProtKB", "id": "F1RNV9", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 688, "end_pos": 690, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RNV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNV9" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 138, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 511 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 688, "end_pos": 690 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": 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] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AP5Z1", "url": "https://www.uniprot.org/uniprotkb/F1RI49", "locus": { "chromosome": "3", "start_pos": 3642412, "end_pos": 3622699, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007577", "url": "https://www.ensembl.org/id/ENSSSCG00000007577" } ] } } ], "crossref": [ { "id": "F1RI49", "url": "https://alphafold.ebi.ac.uk/entry/F1RI49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007577", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007577", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056856", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056856", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LMLAYEF", "url": "https://omabrowser.org/oma/group/LMLAYEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46488", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46488", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46488:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46488:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14764", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14764", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25154", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25154", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QU33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZN7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI49-1", "url": "https://www.uniprot.org/uniprotkb/F1RI49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFTAGAESLLRQAREIRDEELGRLCSRVCALLGREDWGPDALDALRRLFLIVSATKHGRRLEQPCVELLQAALCSPTCPEQLQLLCAAVLREVSPSRSLSLTCDRVQNTQQLGLVASVLLAQGDRRQVGSVGQCALRVLESRQPEGPGLRHLLPVVSKVTNLAPDALHEEQTNTLNRRLGDWLRHASVQQGIAHSSGGFFSTPRARQPGPVTEVDGAVATDFFTVLSTGQHFTEDQWLNVQAFSMLRAWLLHGGPGGSSTPDADDRSELEGSTLSVLSAASTASHLLPPQERLREKAFEYCQRLIEQSNRRALRKADSELQKACLVEAVLVLDVLCRQDPSFLYRTLSCLRALHARLCGDPTCVRALLPVAQFFLHHGEAAAVDAEAVYQHLCTRIPAEHFHSPLLALEFVQFCRASLPLFGRHLGVLRSSFPNLFKFLAWSSPPLTAEFVALLPSLVDAGTAVEMLDLLLDLPCLTAALDLQLRSSQAASEKPLWDVSVRAAGCLEAFRDPQYQALFQHLLRAKASGTTERLVPLHQLLQPLAGCARVAQCAEAVPILLQAFFAAVTQFADGTLTSQLALLLLERSDTLYEVPGYQARVHKVLSSQFLALCTRRPSLVVEQAKELLEFVGSLGGPHGGGHMLTSVVWAIGEYLSVSWDRRCTVEQINKFFEALEALLFEVTQSRPSAALPACPPQVITVLMTTLTKLASRSQDLIPRVSLFLSKMRTLAQSPAAGSAHGEEDARAVLTRATELLNLLKMPSVAQFVLTPSAEVSEPRYHRDTNTALPLALSTVSRLVERDAGLLPG", "length": 807, "header": "tr|F1RI49-1|F1RI49_PIG Isoform 1 of Adaptor related protein complex 5 subunit zeta 1 OS=Sus scrofa OX=9823 GN=AP5Z1 PE=1 SV=5 CANONICAL=F1RI49-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QU33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU33/entry", "sequence": { "sequence": "MFTAGAESLLRQAREIRDEELGRLCSRVCALLGREDWGPDALDALRRLFLIVSATKHGRRLEQPCVELLQAALCSPTCPEQLQLLCAAVLREVSPSRSLSLTCDRVQNTQQLGLVASVLLAQGDRRQVGSVGQCALRVLESRQPEGPGLRHLLPVVSKVTNLAPDALHEEQTNTLNRRLGDWLRHASVQQGIAHSSGGFFSTPRARQPGPVTEVDGAVATDFFTVLSTGQHFTEDQWLNVQAFSMLRAWLLHGGPGGSSTPDADDRSELEGSTLSVLSAASTASHLLPPQERLREKAFEYCQRLIEQSNRRALRKADSELQKACLVEAVLVLDVLCRQDPSFLYRTLSCLRALHARLCGDPTCVRALLPVAQFFLHHGEAAAVDAEAVYQHLCTRIPAEHFHSPLLALEFVQFCRASLPLFGRHLGVLRSSFPNLFKFLAWSSPPLTAEFVALLPSLVDAGTAVEMLDLLLDLPCLTAALDLQLRSSQAASEKPLWDVSVRAAGCLEAFRDPQYQALFQHLLRAKASGTTERVLSSQFLALCTRRPSLVVEQAKELLEFVGSLGGPHGGGHMLTSVVWAIGEYLSVSWDRRCTVEQINKFFEALEALLFEVTQSRPSAALPACPPQVITVLMTTLTKLASRSQDLIPRVSLFLSKMRTLAQSPAAGSAHGEEDARAVLTRATELLNLLKMPSVAQFVLTPSAEVSEPRYHRDTNTALPLALSTVSRLVERDAGLLPG", "length": 737, "header": "tr|A0A5G2QU33-1|F1RI49_PIG Computationally mapped isoform of Adaptor related protein complex 5 subunit zeta 1 OS=Sus scrofa OX=9823 GN=AP5Z1 PE=1 SV=1 CANONICAL=F1RI49-1" }, "locus": { "chromosome": "3", "start_pos": 3638908, "end_pos": 3622794, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074448.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074448.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061635.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061635.1" } ] } }, { "isoform_ac": "A0A5G2QZN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZN7/entry", "sequence": { "sequence": "PPGSGFQSLLERQGEIRDEELGRLCSRVCALLGREDWGPDALDALRRLFLIVSATKHGRRLEQPCVELLQAALCSPTCPEQLQLLCAAVLREVSPSRSLSLTCDRVQNTQQLGLVASVLLAQGDRRQVGSVGQCALRVLESRQPEGPGLRHLLPVVSKVTNLAPDALHEEQTNTLNRRLGDWLRHASVQQGIAHSSGGFFSTPRARQVRLGTRHLPGPGPLSPLPALTRALVPEPPPSHPYSGFGAGSQPPSLCCSVVVEALDMLARVTCLTGCERSSGACVPAAAVQGLSSEGVGGQGRGSCAMSPVLGPFWPRTQGPAALRVLPCLPQPGPVTEVDGAVATDFFTVLSTGQHFTEDQWLNVQAFSMLRAWLLHGGPGGSSTPDADDRSELEGSTLSVLSAASTASHLLPPQERLREKAFEYCQRLIEQSNRRALRKADSELQKACLVEAVLVLDVLCRQDPSFLYRTLSCLRALHARLCGDPTCVRALLPVAQFFLHHGEAAAVDAEAVYQHLCTRIPAEHFHSPLLALEFVQFCRASLPLFGRHLGVLRSSFPNLFKFLAWSSPPLTAEFVALLPSLVDAGTAVEMLDLLLDLPCLTAALDLQLRSSQAASEKPLWDVSVRAAGCLEAFRDPQYQALFQHLLRAKASGTTERLVPLHQLLQPLAGCARVAQCAEAVPILLQAFFAAVTQFADGTLTSQLALLLLERSDTLYEVPGYQARVHKVLSSQFLALCTRRPSLVVEQAKELLEFVGSLGGPHGGGHMLTSVVWAIGEYLSVSWDRRCTVEQINKFFEALEALLFEVTQSRPSAALPACPPQVITVLMTTLTKLASRSQDLIPRVSLFLSKMRTLAQSPAAGSAHGEEDARAVLTRATELLNLLKMPSVAQFVLTPSAEVSEPRYHRDTNTALPLALSTVSRLVERDAGLLPG", "length": 930, "header": "tr|A0A5G2QZN7-1|F1RI49_PIG Computationally mapped isoform of Adaptor related protein complex 5 subunit zeta 1 OS=Sus scrofa OX=9823 GN=AP5Z1 PE=1 SV=2 CANONICAL=F1RI49-1" }, "locus": { "chromosome": "3", "start_pos": 3638908, "end_pos": 3632216, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084942.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084942.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070346.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070346.2" } ] } }, { "isoform_ac": "A0A5G2RBN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBN4/entry", "sequence": { "sequence": "MFTAGAESLLRQAREIRDEELGRLCSRVCALLGREDWGPDALDALRRLFLIVSATKHGRRLEQPCVELLQAALCSPTCPEQLQLLCAAVLREVSPSRSLSLTCDRVQNTQQLGLVASVLLAQGDRRQVGSVGQCALRVLESRQPEGPGLRHLLPVVSKVTNLAPDALHEEQTNTLNRRLGDWLRHASVQQGIAHSSGGFFSTPRARQVRLGTRHLPGPGPLSPLPALTRALVPEPPPSHPYSGFGAGSQPPSLCCSVVVEALDMLARVTCLTGCERSSGACVPAAAVQGLSSEGVGGQGRGSCAMSPVLGPFWPRTQGPAALRVLPCLPQPGPVTEVDGAVATDFFTVLSTGQHFTEDQWLNVQAFSMLRAWLLHGGPGGSSTPDADDRSELEGSTLSVLSAASTASHLLPPQERLREKAFEYCQRLIEQSNRRALRKADSELQKACLVEAVLVLDVLCRQDPSFLYRTLSCLRALHARLCGDPTCVRALLPVAQFFLHHGEAAAVDAEAVYQHLCTRIPAEHFHSPLLALEFVQFCRASLPLFGRHLGVLRSSFPNLFKFLAWSSPPLTAEFVALLPSLVDAGTAVEMLDLLLDLPCLTAALDLQLRSSQAASEKPLWDVSVRAAGCLEAFRDPQYQALFQHLLRAKASGTTERLVPLHQLLQPLAGCARVAQCAEAVPILLQAFFAAVTQFADGTLTSQLALLLLERSDTLYEVPGYQARVHKVLSSQFLALCTRRPSLVVEQAKELLEFVGSLGGPHGGGHMLTSVVWAIGEYLSVSWDRRCTVEQINKFFEALEALLFEVTQSRPSAALPACPPQVITVLMTTLTKLASRSQDLIPRVSLFLSKMRTLAQSPAAGSAHGEEDARAVLTRATELLNLLKMPSVAQFVLTPSAEVSEPRYHRDTNTALPLALSTVSRLVERDAGLLPG", "length": 930, "header": "tr|A0A5G2RBN4-1|F1RI49_PIG Computationally mapped isoform of Adaptor related protein complex 5 subunit zeta 1 OS=Sus scrofa OX=9823 GN=AP5Z1 PE=1 SV=1 CANONICAL=F1RI49-1" }, "locus": { "chromosome": "3", "start_pos": 3638908, "end_pos": 3622794, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088192.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088192.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074423.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074423.1" } ] } }, { "isoform_ac": "F1RI49-1", "url": "https://www.uniprot.org/uniprotkb/F1RI49/entry", "sequence": { "sequence": "MFTAGAESLLRQAREIRDEELGRLCSRVCALLGREDWGPDALDALRRLFLIVSATKHGRRLEQPCVELLQAALCSPTCPEQLQLLCAAVLREVSPSRSLSLTCDRVQNTQQLGLVASVLLAQGDRRQVGSVGQCALRVLESRQPEGPGLRHLLPVVSKVTNLAPDALHEEQTNTLNRRLGDWLRHASVQQGIAHSSGGFFSTPRARQPGPVTEVDGAVATDFFTVLSTGQHFTEDQWLNVQAFSMLRAWLLHGGPGGSSTPDADDRSELEGSTLSVLSAASTASHLLPPQERLREKAFEYCQRLIEQSNRRALRKADSELQKACLVEAVLVLDVLCRQDPSFLYRTLSCLRALHARLCGDPTCVRALLPVAQFFLHHGEAAAVDAEAVYQHLCTRIPAEHFHSPLLALEFVQFCRASLPLFGRHLGVLRSSFPNLFKFLAWSSPPLTAEFVALLPSLVDAGTAVEMLDLLLDLPCLTAALDLQLRSSQAASEKPLWDVSVRAAGCLEAFRDPQYQALFQHLLRAKASGTTERLVPLHQLLQPLAGCARVAQCAEAVPILLQAFFAAVTQFADGTLTSQLALLLLERSDTLYEVPGYQARVHKVLSSQFLALCTRRPSLVVEQAKELLEFVGSLGGPHGGGHMLTSVVWAIGEYLSVSWDRRCTVEQINKFFEALEALLFEVTQSRPSAALPACPPQVITVLMTTLTKLASRSQDLIPRVSLFLSKMRTLAQSPAAGSAHGEEDARAVLTRATELLNLLKMPSVAQFVLTPSAEVSEPRYHRDTNTALPLALSTVSRLVERDAGLLPG", "length": 807, "header": "tr|F1RI49-1|F1RI49_PIG Isoform 1 of Adaptor related protein complex 5 subunit zeta 1 OS=Sus scrofa OX=9823 GN=AP5Z1 PE=1 SV=5 CANONICAL=F1RI49-1" }, "locus": { "chromosome": "3", "start_pos": 3638908, "end_pos": 3622794, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008316.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008316.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008097.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008097.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYJ5-1", "protein_name": "Adaptor related protein complex 5 subunit zeta 1", "gene_name": "Ap5z1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSAGAESLLHQAREIQDEELQRFCSRVTKLLQEAPGPATVDALQRLFLIVSSTKYPRRLEKACVDLLQTTLCLPTSPEQLQVLCAAILREMSPFNDLTLSCDHTQNTRQLSLVASVLLAQGDRNGEIRQVSQRIFKILENRQPEGPSVRPLLPVLSKVIGLAPGILVEDQTNLLSKRLVDWLRYASIQQGLPYSGGFFSTPRTRQPGPITEVDGAVASDFFTVLSTGQHFTEDQWVNMQAFSMLRKWLLHSGPEDPGSPDADDKSELEGSMLSVLSAASTASRLLPPRERLREVAFEYCQRLLEQSNRRALRKGDSDLQKACLVEAVLVLDVLCRQDPSFLYRTLSCLKPLHRRLGEDPGSERALVPLAQFFLNHGEAAAMDAEAIYAQLLGSLPSERFHSPTLAFEVIHFCTHNLALFDPHFLSLLRLSFPNLFKFLAWNSPPLTAEFVVLLPALVDAGTAVEMLHALLDLPCLTAALDLQLRSTQTPSERPLWDVSLRVPSCLEAFQDPQFQGLFRHLLRTKASGSTERLTPLHQVLKPMASCARVAQCVEAIPVLLQAFFSAVTQTADGPLINQLALLLLERSDSLYPVPQYEARVHRVLSSQLLVLCKLKPSLVVELSRELLEFVGSVSSIRSRASMFTCVVWAIGEYLSVTCDKRCTAEQINKFFEALEALLFEVTQSRPSADLPCCPPELVTALMTTLTKLASRSQDLIPRVSLFLSKMRTLAQNPATSSMHSEEDTESIRIRATELLTLLKMPSVAQFVFTPTVGVCQPRYHQDTNVALPLALRTVSRLVEKEAGLLPG", "length": 807 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8C2N0C1-1", "protein_name": "AP-5 complex subunit zeta-1 isoform X1", "gene_name": "Ap5z1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFSAGAESLLHQAREIQDEELQRFCTRVTKLLQEPPGPATMDALQRLFLIVSATKYPRRLEKMCVDLFQTTLCLPTSPEQLQVLCAAILREMSPFDDLALSCDHTQNTRQLSLVASVLLAQGNRKGEIRQVSQRIFKILENRQPEGPSVRHLLPALSKVIGLAPGTLMEDQNNLLSKRLVDWLRYASIQQGLPSSAGFFSTPRTRQPGPITEVDGAVASDFFTVLSTGQHFTEDQWLNMQAFSMLRKWLLHSGPEDPGSPDADDKSELEGSTLSVLSAASTASRLLPPRERLREVAFEYCQRLLEQSNRRALRKADSDLQKACLVEAVLVLDVLCRQDPSFLYRTLSCLKALHRRLGEDPGSERALVPLAQFFLNHGEAAAMDAEVIYQHLLSRLPSERFYSPTLAFEVIHFCTHNLALFDPHILSLLRLSFPSLFKFLAWNSPPLTAEFVVLLPALVEAGTTVEMLHALLDLPCLTAALDLQLRSTQTPSERPLWDVSLRIPGCLEAFRDPQFQGLFRHLLRTKASGSMERLTPLHQLLKPMASCARVTQCAEAVPILLQAFFSTVTQLADGALINQLVLLLLDRSDSLYQAPQYEARVHRVLNSQFLALCKLKPSLVVELSRELLEFVGNVSSICSRASMFTCVVWAIGEYLSVTCDKRCTVEQINKFFEALEALLFEVTQSRPSADLPCCPPQVVTALMTTLTKLASRSQDLIPRVSLFLSKLRTLAQNPATSSVHSEEDAEAIRTRATELLTLLKIPSVAQFVFTPTAGVCQPRYHRDANTALPLALRTVSRLVEKEAGLLPG", "length": 807 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8M6YX82-1", "protein_name": "AP-5 complex subunit zeta-1 isoform X1", "gene_name": "ap5z1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYAAATESLIKQAREIKEEELQRFCGRVYKLLHSKDVIGEAVDSLQRLHLIVSATKYARELPSDLLMKLQTLLRSSSCPEQLQFLSSSIIRESFPPSVHSLSSDLSQDSRIFSCVAAVVLAQAGGKEDVMPLFHHLMKSFESRLSDGQIPKHALPILSSMITTYSEILTDDQVNLVSRKLVDWLRYASMQQGASMSSGGFFSAPRTRQPAPLTEVDGVVTGDFFTVLCVGQSYTEDQWMNMYAFSMIKSWLLTYDTEGTTNTESALLKRAQIIQLQHQDDRSEVDSSVMSMVSATSSSSRLLPPKERLREKAFEYCQRLIEQSDRKALKRTDTELQKACIVESVSIMDIICGEDPSYVYRAFPCIKALYGRLNGDFAYARTLLPIAQFYLNHSETAAVDSEAVFCQLFGHCPAEQFNEPMLAFEFVQFCLLNSSVLQDRVANYRQSFPNLLKFLAWNSSGLIAEFVELLPSLVAPDTAIELLHTILDLPCLAAALDLQQRSSCYQASDRTTWDQQGAKVAACLEAFRQPSYRGLFLYILRPEAGTGDTIDRLKELHQILADMAECPRVVQCAQIVPVLLHVYFNTVTEKADEKMMNQLLLVLLERCSLLYNIKTFHVEVQRAFSTHLQALCKHHPPLIVDQSREILEFAGSPTNIYSKEDFYTHVVWVIGEYLSVSYDPRCRVELITSFFECLEAVLFEITQVRQSASPPSFSPRLITVLMTTLAKLATRSQDLIPRASLFLSKMRTFARSAPVTACYSEEDTEEIITRAHELINLLKLPNVAQFVLAPSAGADGPRWHRDTNASLPQAMRTVSGLLHKHSSFLPA", "length": 826 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZI01-1", "protein_name": "Adaptor related protein complex 5 subunit zeta 1", "gene_name": "AP5Z1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGTAAAESLLKQAREVQEDELSRFAARVAAQLQGPEPGPEAADCLQRLHLVLAASKSPRQLDAQLVELLQAVLCSPKCPQQIQLLCAAILREMAPCDGLRLSCERIHDTKLLSLVSSVLLAQGEEKAEVSAVGQRIVKALEGRLPEGQSSRYLLPVLSNVISLSPEALTEEQTNVVSKKMADWLRYASTQQGVAQPSGGFFSNPRTRQPGPVTEVDGAIATDFFTVLSLGQHYTEDQWLNMQTFSMLRKWLLCYGDKKMNTPNSGDKSQTDRSVVSVVSTSSTSSRLLPPKERLREKAFEYCQRLIEQSNRQALKKADGDLQKACLIEAVAIMDIICKQDSSYVYRAASFLKILHGRISGDATYARALLPIAQFFLNHGEMAAVDSDAIYKHLFTDIPAQLFHNSSLAFEFVLFCRDNSQLLTETSSVFRQSFPNLFKFLAWNSPPLIAEFVDILPFLLDAGTAIEIFHLLLDLPCLTAALDVQMRSSSLPSSERAACDPAVKPAACLEAFRSPLYRSAFQYLLRVESVSEDFQERLIPLRQLLGSLASSPRVVQCADTVPVLLELFFSVVSEFADASLINQLVVLVLQRSDQLYEIPAFKDDVHRVLSSQLVMLCKLHPALIVELSKELLEFSGTVSNIQNKEPIFTHVVWAIGEYMSVSYDKRCTVEQINRFFETLEAVLFEVTQVRPQISVPNYAPRAITVLMAALTKLAARSQDLIPRVSLFLSKMRTFVQSPAVTSVYCEEDREEILTRATELMNLLKMPSVAQFVFTPSVDVARTRFQKEVNDTLPSALRIVTRLLEPAPGFVPG", "length": 811 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TCS9-1", "protein_name": "Adaptor related protein complex 5 subunit zeta 1", "gene_name": "AP5Z1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRHAARPGSRRRCGHCFASRPCLERAARPQGGGGGGMLATGTESLLRQAREVGAEELGRFCARVSALLQAEDWGPDALDALRRLFLIVAATKYSRRLEPTCVALLQTTLCSPRCPERLQLLCAAVLREMAPSDSLSLSCDHAQSSRQLGLVASVLLAQGDPQQVRTVGQCVIKVLESRQPEGPSLTYLLPVVSKVTSLAPDALPEEQTKALSKRLGEWLRYASVQQGAAHASGGFFSTPRARQPGPVTEVDGTVATDFFTVLSTGQRFTEDQRLNVQAFSMLRAWLLQGGPARPGAADADDRSELEGSTVSVLSAASAASHLLPPAEWLREKALEYCQRLLEQSGRRALRKADSDLQKACLVEAVLVLDVLCRQDPSFLYRALPCVRALRTRLCGDTACVRALLPIAQFFLHHGEAAAVDADAVCQHLFTRIPSEHFHSPMLAFEFVQFCRDHLVLFGSNLDLLRTSFPNLFKFLAWSSPALTSGFVALLPVLVDAGTAVEMLHLLLDLPSLTAALDLQLRASQAASERPLWDVSVRAPGCLEALRDPQAQGLFQHLLRAKASGTVERLTPLHQLLQPLASCARVLQCAQAVPTLLRAFFAAVTQFASGALASQLALLLLERSDSLFQVEGYEADVHRVLSSQFPALCKLHPPLVVERAKELLEFVGSLGGPRSTGHMLTSVVWAVGEYLSVSWDRRCSAEQISRFFEALEALLFEVTQSRPSAALPKCPPQVITVLMTTLTKLASRSQDLIPRVSLLLSKMRTLAQSPAVGPVHGEDDLGAVRTRATELLNLLKMPSVAQFVLTPSVEVSQPRYHRDCNTALPLALDMVSRLLEREAGLLPGTRPPQHLPLEAVPGRSRALCSSPE", "length": 867 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O43299-1", "protein_name": "AP-5 complex subunit zeta-1", "gene_name": "AP5Z1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSAGAESLLHQAREIQDEELKKFCSRICKLLQAEDLGPDTLDSLQRLFLIISATKYSRRLEKTCVDLLQATLGLPACPEQLQVLCAAILREMSPSDSLSLAWDHTQNSRQLSLVASVLLAQGDRNEEVRAVGQGVLRALESRQPEGPSLRHLLPVMAKVVVLSPGTLQEDQATLLSKRLVDWLRYASLQQGLPHSGGFFSTPRARQPGPVTEVDGAVATDFFTVLSSGHRFTDDQWLNVQAFSMLRAWLLHSGPEGPGTLDTDDRSEQEGSTLSVISATSSAGRLLPPRERLREVAFEYCQRLIEQSNRRALRKGDSDLQKACLVEAVLVLDVLCRQDPSFLYRSLSCLKALHGRVRGDPASVRVLLPLAHFFLSHGEAAAVDSEAVYQHLFTRIPVEQFHSPMLAFEFIQFCRDNLHLFSGHLSTLRLSFPNLFKFLAWNSPPLTSEFVALLPALVDAGTALEMLHALLDLPCLTAVLDLQLRSAPAASERPLWDTSLRAPSCLEAFRDPQFQGLFQYLLRPKASGATERLAPLHQLLQPMAGCARVAQCAQAVPTLLQAFFSAVTQVADGSLINQLALLLLGRSDSLYPAPGYAAGVHSVLSSQFLALCTLKPSLVVELARDLLEFLGSVNGLCSRASLVTSVVWAIGEYLSVTYDRRCTVEQINKFFEALEALLFEVTQCRPSAALPRCPPQVVTVLMTTLTKLASRSQDLIPRASLLLSKMRTLAHSPATSSTHSEEGAEAIRTRATELLTLLKMPSVAQFVLTPSTEVCSPRYHRDANTALPLALRTVSRLVEREAGLMPG", "length": 807 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3U829-1", "protein_name": "AP-5 complex subunit zeta-1", "gene_name": "Ap5z1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSAGAESLLHQAREIQDEELRRFCSRVTKLLQEAPGPATVDALQRLFLIVSATKYPRRLEKMCVDLLQTTLCLPASPEQLQVLCAAILREMSPFNDLALSCDHTPNTRQLSLVASVLLAQGDRKGEIRCVSQRIFKILENRQPEGPSVRPLLPILSKVIGLAPGILMEDQTNLLSKRLVDWLRYASIQQGLPYSGGFFSTPRTRQPGPITEVDGAVASDFFTVLSTGQHFTEDQWVNMQAFSMLRKWLLHSGPEDPCSPDADDKSELEGSTLSVLSAASTASRLLPPRERLREVAFEYCQRLLEQSNRRALRKGDSDLQKACLVEAVSVLDVLCRQDPSFLYRTLSCLKALHRRLGEDPGSERALVPLAQFFLNHGEAAAMDAEAVYGQLLRGLPSERFHSPTLAFEVIHFCTHNLALFDSHFLSLLRLSFPSLFKFLAWNSPPLTAEFVVLLPALVDAGTAVEMLHALLDLPCLTAALDLQLRSTQTPSERLLWDISLRVPSCLEAFQDPQFQGLFRHLLRTKASGSTERLTPLHQVLKPMASCARVTQCAEAVPVLLQAFFSAVTQTADGALINQLALLLLERSDSLYPVPQYEARVHGVLSSQLLVLCKLKPSLVVELSRELLEFVGSVSSIHSRASVFTCVVWAIGEYLSVTWDKRCTAEQINKFFEALEALLFEVTQSRPLADLPCCPPEVVTALMTTLTKLASRSQDLIPRVSLFLSKMRTLAQNPATSSVHSEEGAESIRTRASELLTLLKMPSVAQFVFTPPAGVCQPRYHRDTNVALPLALRTVSRLVEKEAGLLPG", "length": 807 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B09-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MQTNVSGAVNIEELLNKIENVFGKNQKSLSINSTFIEKFTTLLLDPNTPYKIKLFTLSTLSKFSKNEHQILYKNFKTFDPKTLPLILSLLLSTGTDSQIYISSIPFLVQTISSQDPITRSASMPSLAISARYHSNSLTNLHIKPIETQLIQFLSHASLISDQKQSSIGFFSKIGNTSATPVTELDGSVSIEFFTVLNNSTNYTEDQTFNIYSFSILYTWLINLYKINKQQSLTNTDQQIEQLDQQIEQQLELIEKQQDQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHRTLNQSFQNTIVSYCLRLIDQSKLKPIDGSGNNNSNLNGGNSGNSNSSGGGSMIYNKPIQQQSATAIALGIDESGGDDLSVMALLESIRILDYLCLLDSNLIAKIFPTVQKAYQLHLPSSKNTNATSGHILLALLQFFVNHSHTLVYDPEPLFKVYFQTYLPRTYMNSFVSFETINFCLKNKKTLLKNSNVFNLYFPPIFKCLAWFPNSLSGEFSELLPSFISPNSFIEVFHLLLDLPLLTLSMESVLVEQRKYASMGIEHNDVGVDTAWSEYRVLYNYLLRNESGVNINFWSTTTLPLLQQFCKKNPVTPRSIGSCELVPLLLDIYFEVLLEYGSLNTFVTLLPVIFERMEQIFPYEPYQKRIRENLMSHLLSIFKKHSTLIQSEKELILSVISEARMTYKDIVTLSLSFIIGEYCSPYVCPTITSDVYSDYHEALELITYEKINTIKMESLSNSSQSSLQQSSLIMKQQQQQQQKQQQHQQEQSSSSNNNNNDIKNIENNENDNDIEKLNNDKKNNDNENDQNQNFINNYNLNYNLNINILNNINNFNLNNIIDNDDFEKLQEQYNINIMLNLISSLTKIASRWPDATSRVVLCLMKIIGYQQYFDPQVIQRANESISLLKYPSFAAALYSCQQPQNDSFHSTISSTTIGQTIQDCNSSLSFLLNDTLNYKSKNTIHPFILK", "length": 975 }, "evidence": [ { "id": "F1RI49", "url": "https://omabrowser.org/oma/group/F1RI49/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "AP-5 adaptor complex", "id": "GO:0044599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044599", "evidence": [ { "database": "UniProtKB", "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49" } ], "pmid": "" }, { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "F1RI49", "url": "https://www.uniprot.org/uniprotkb/F1RI49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RI49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 807, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RI49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RI49" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI49" }, { "id": "PF14764", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14764" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP-5 complex subunit zeta-1 ARM repeats", "eco_id": "ECO_0000259", "start_pos": 320, "end_pos": 437, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI49" }, { "id": "PF25154", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25154" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP-5 complex subunit zeta-1 C-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 449, "end_pos": 797, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI49" }, { "id": "PF25153", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25153" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP-5 complex subunit zeta-1 N-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 279, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RFQ9-1", "uniprot_ac": "F1RFQ9", "uniprot_id": "F1RFQ9_PIG", "mass": { "chemical_mass": 104067.0, "monoisotopic_mass": 104067.0 }, "refseq": { "ac": "XP_003132904", "name": "splicing factor, suppressor of white-apricot homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132904" }, "gene_names": [ { "name": "SFSWAP", "type": "recommended", "evidence": [ { "id": "F1RFQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ] }, { "name": "SFSWAP", "type": "synonym", "evidence": [ { "id": "XP_003132904", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132904" } ] } ], "protein_names": [ { "name": "Splicing factor, suppressor of white-apricot homolog", "type": "recommended", "evidence": [ { "id": "F1RFQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9/entry#names_and_taxonomy" } ] }, { "name": "Splicing factor, arginine/serine-rich 8", "type": "synonym", "evidence": [ { "id": "F1RFQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9/entry#names_and_taxonomy" } ] }, { "name": "Suppressor of white apricot protein homolog", "type": "synonym", "evidence": [ { "id": "F1RFQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9/entry#names_and_taxonomy" } ] }, { "name": "splicing factor, suppressor of white-apricot homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003132904", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132904" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SFSWAP", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9", "locus": { "chromosome": "14", "start_pos": 23516257, "end_pos": 23594257, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009744", "url": "https://www.ensembl.org/id/ENSSSCG00000009744" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009744", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009744", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511047", "url": "https://www.ncbi.nlm.nih.gov/gene/100511047", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511047", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511047", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SDGAYHE", "url": "https://omabrowser.org/oma/group/SDGAYHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZMT4", "url": "https://www.orthodb.org/?gene=A0A286ZMT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RFQ9", "url": "https://www.orthodb.org/?gene=F1RFQ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13161:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13161:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09750", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09750", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132904", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132904", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZMT4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMT4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QW76-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFQ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYGASGGRAKTERKSGVKEEAGPGGAGGGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLNVPPDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSEEKKKPGVSSDNEDEDDEEDGSYLHPSLFASKKCSRLEELMKPLKVVDPDHPLAALVRKAQADSPTPTPPTTDGAAVQPSQVEYSTDSTVAAMYYSYYMLPDGTYCLAPPPPGVDVATYYSTLPAGVAVSSSAGVTATAPPPPGTTPPPPPTTAETSSGVTSTTITTSALAPVAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGESAQSVSAPEEAPAESAPEKPSDTGEDAVSEDVADAGGRSSSSGKKEASSTSKAVPDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSATNTNPAVAPPCVVVEEKRPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKAEESTFNAEEASAVSCPLLAGGRPLPTLDIKPPEGPSSKSKDLSREEEREKKKKKHKKRSRTRSRSPKYHSSSSKSRSRSHSKAKHCLPSAYRTARRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSNSPGVSRKRTRSRSPHEKKKKRRSRSRTKSKAGSQPASPSKQAARRHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNMQTSAS", "length": 944, "header": "tr|F1RFQ9-1|F1RFQ9_PIG Isoform 1 of Splicing factor, suppressor of white-apricot homolog OS=Sus scrofa OX=9823 GN=SFSWAP PE=4 SV=1 CANONICAL=F1RFQ9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMT4/entry", "sequence": { "sequence": "MYGASGGRAKTERKSGVKEEAGPGGAGGGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLNVPPDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSEEKKKPGVSSDNEDEDDEEDGSYLHPSLFASKKCSRLEELMKPLKVVDPDHPLAALVRKAQADSPTPTPPTTDGAAVQPSQVEYSTDSTVAAMYYSYYMLPDGTYCLAPPPPGVDVATYYSTLPAGVAVSSSAGVTATAPPPPGTTPPPPPTTAETSSGVTSTTITTSALAPVAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGESAQSVSAPEEAPAESAPEKPSDTGEDAVSEDVADAGGRSSSSGKKEASSTSKAVPDGKLVKAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKAEESTFNAEEASAVSCPLLAGGRPLPTLDIKPPEGPSSKSKDLSREEEREKKKKKHKKRSRTRSRSPKYHSSSSKSRSRSHSKAKHCLPSAYRTARRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSNSPGVSRKRTRSRSPHEKKKKRRSRSRTKSKAGSQPASPSKQAARRHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNMQTSAS", "length": 867, "header": "tr|A0A286ZMT4-1|F1RFQ9_PIG Computationally mapped isoform of Splicing factor, suppressor of white-apricot homolog OS=Sus scrofa OX=9823 GN=SFSWAP PE=4 SV=2 CANONICAL=F1RFQ9-1" }, "locus": { "chromosome": "14", "start_pos": 23593896, "end_pos": 23516549, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064219.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064219.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032939.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032939.2" } ] } }, { "isoform_ac": "A0A5G2QW76-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW76/entry", "sequence": { "sequence": "MYGASGGRAKTERKSGVKEEAGPGGAGGGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLNVPPDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSEEKKKPGVSSDNEDEDDEEDGSYLHPSLFASKKCSRLEELMKPLKVVDPDHPLAALVRKAQADSPTPTPPTTDGAAVQPSQVEYSTDSTVAAMYYSYYMLPDGTYCLAPPPPGVDVATYYSTLPAGVAVSSSAGVTATAPPPPGTTPPPPPTTAETSSGVTSTTITTSALAPVAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGESAQSVSAPEEAPAESAPEKPSDTGEDAVSEDVADAGGRSSSSGKKEASSTSKAVPDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSATNTNPAVAPPCVVVEEKRPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKAEESTFNAEEASAVSCPLLAGGRPLPTLDIKPPEGPSSKSKDLSREEEREKKKKKHKKRSRTRSRSPKYHSSSSKSRSRSHSKAKHCLPSAYRTARRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSNSPGVSRKRTRSRSGGPLPPLCWNRGPSVFAANRPPCGHISPRSSCPSVPLYSAPYPSPVEKGKEV", "length": 900, "header": "tr|A0A5G2QW76-1|F1RFQ9_PIG Computationally mapped isoform of Splicing factor, suppressor of white-apricot homolog OS=Sus scrofa OX=9823 GN=SFSWAP PE=4 SV=1 CANONICAL=F1RFQ9-1" }, "locus": { "chromosome": "14", "start_pos": 23593896, "end_pos": 23526481, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073585.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073585.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068405.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068405.1" } ] } }, { "isoform_ac": "F1RFQ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9/entry", "sequence": { "sequence": "MYGASGGRAKTERKSGVKEEAGPGGAGGGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLNVPPDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSEEKKKPGVSSDNEDEDDEEDGSYLHPSLFASKKCSRLEELMKPLKVVDPDHPLAALVRKAQADSPTPTPPTTDGAAVQPSQVEYSTDSTVAAMYYSYYMLPDGTYCLAPPPPGVDVATYYSTLPAGVAVSSSAGVTATAPPPPGTTPPPPPTTAETSSGVTSTTITTSALAPVAAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGESAQSVSAPEEAPAESAPEKPSDTGEDAVSEDVADAGGRSSSSGKKEASSTSKAVPDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSATNTNPAVAPPCVVVEEKRPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKAEESTFNAEEASAVSCPLLAGGRPLPTLDIKPPEGPSSKSKDLSREEEREKKKKKHKKRSRTRSRSPKYHSSSSKSRSRSHSKAKHCLPSAYRTARRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSNSPGVSRKRTRSRSPHEKKKKRRSRSRTKSKAGSQPASPSKQAARRHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNMQTSAS", "length": 944, "header": "tr|F1RFQ9-1|F1RFQ9_PIG Isoform 1 of Splicing factor, suppressor of white-apricot homolog OS=Sus scrofa OX=9823 GN=SFSWAP PE=4 SV=1 CANONICAL=F1RFQ9-1" }, "locus": { "chromosome": "14", "start_pos": 23593896, "end_pos": 23516549, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010683.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010683.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010406.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010406.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 339, "start_aa": "Thr", "end_pos": 339, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr339", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 341, "start_aa": "Thr", "end_pos": 341, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr341", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 419, "start_aa": "Thr", "end_pos": 419, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr419", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 425, "start_aa": "Thr", "end_pos": 425, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr425", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QW76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QW76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511047", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511047", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LYZ4-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "SFSWAP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYGASGGRTKTERKSGAKEETGPGGAGGGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIETLCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLNVPPDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSEEKKKSGVSSDNEDDDDEEDGSYLHPSLFASKKCNRLEELMKPLKVVDPDHPLAALVRKAQADSPAPTPPTADGAAVQPSQVEYTTDSTVAAMYYSYYMLPDGTYCLAPPPPGVDVATYYSTLPAGVAVSSSTGVTATAPPPPGTTPPPPPTTAETSSGVTSTTITTSALAPVATIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGENAQAVSAPEETPAEPAPEKPSDAGEDSVSEDAADAGGRGVSSGKKEASSSRAVPDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSATNTNPAVAPPCVVVEEKRPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKVEESPFSIEEAGTVPCPLLAGGRPLPTLDVKPPEGRSSRSKDPPREEERERKKKKHKKRSRTRSRSPKYHSSSKSRSRSHSKAKHCLPSAYRTARRSRPTASPGTLSTEPCQSSSAVAAAAERDSYQAASTTSRFASWSSFEGKPGKMSRSRSRSPRRRAHSPERRREDRSVPTAYRMSNSPGVSRKRTRSRSPHEKKKKRRSRSRTKSKAGSQPASPSKQPARRHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNMQTSAS", "length": 994 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0ZQQ8-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "SFSWAP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLSGGGAAPGPPGGGGGGGGGGGNSRVELLVFGYACKLFRDDEKAQYQEQGRHLIPWMGDPKIMIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGTYNAVGFRYGSDYYDPSEPTEEEEHQPAKQRETAQTENVEENEEPFVAPPGLNVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYAAPSENKADEKKHTKVKSEEEDDDDDDDDGNYLHPSLFASKKSSRLEELMKPLKVVDPDHPLAALVRKAQSDNNSSTPQSTDGAAVQTSQVEYSSDSTVAAMYYSYYMLPDGTYCLAPPPPGIDVATYYNALPAGVTVSSTTGVATVPPPPGTTPPPPPDTTDSSSGLTSTTTSTSTIAPVVAIIPPPPDIQPVIDKLAEYVARNGIKFETSVRAKNDLRFEFLQPWHQYNPYYEFKKQFFLQKESSDNCQGVSSSEDVPADTTTDAPSETQLADGHAPEDGSEPIAKGAPETKKDVLPKTVSDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDEEEEEGKEGQENANSASNSTPAVTTPCVAAEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLSEAETEKVEENSFSVESVSSIPCPATAVRTLPTLDVGRTSAAERPSSKSRDPPRDEEKEKKRKKHKKRSRSRSRSPFKYHSSSKTRSRSHSKAKHSLPTAYRTVRHSRLTASTGTLSMEPSLSSSSVAAATERESYQAASTTKRFDCWRSFEGNPGKTSRSRSRSPRRRAHTPERRREERSVPTAYRISNSPGNSRKRARSKSPHEKKKKRRSRSRTKSRARSPSPAVSPGKPSTHKNSVHSNSVSPVESRESSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNIQTSAS", "length": 1001 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7K7U1-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "Sfswap", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYGAGAGRAKPERKGGAKEEAGPGGAGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKSMKEGRYTVLAENKNEEKKKSQASLRFVAVLLPRPLKYWGYRCEPSYLVANILNSIAESGSTSDNEDEDEEEDGSYLHPSLFASKKSSRLEELMKPLKVVDPDHPLAALVRKAQADSSAPAPPTADGTPTQPSQVEYTTDSAVAAMYYSYYMLPDGTYCLAPPPPGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAETSSGVTSTTTTTSALAPVAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGSSTQVASTAEEASTETAAEESSEAGEDSTPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSNVANPSPAAAPPCVLVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKLEESAFNVEETSVMPCPLLVGGRTLPMLEVKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRSPKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRPSASPGILSVEPCPSSSAVAAAQQESYQAASASSSFDSWSSFEGKPGKPSRSRSRSPRRRAHSPERRREDRSVPTAYRMSSSPGASRKRTRSRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS", "length": 1034 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZTQ1-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "Sfswap", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYGAGGGRAKAERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKSEAENLEENEEPFIAPLGLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAESKSEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVVDPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPPPGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAESSSGVTSTTTTTSALAPVAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGGSTQAASTAEEAPTETAVEESSEAGEDGAPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSAVVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPDAEVGKLEESTFGVEETGVMPCPLLVGGRTLPMLEGKPPERPSSRCRDPPREEEREKKKKKHKKRSRTRSRSPKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREDRSVPTAYRMSGSPGVSRKRTRSRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS", "length": 945 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1Q5L3-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "sfswap", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYRRGGSKKEQNNATKEQSDSSKYAELLVFGYACKLFRDDERAFYHDQGKHLIPWMGDKNIMIDRYDGRGHLHDLSEYDAGSWNHDYQLSEEEARIEALCDEERYLAMHTDLLEEEARQEEEYKRLSEALADEGTYNAVAFRYSADYYDPSQPTEEDEASKEADQEQLEEESEEPFVAPPGLLIPPDVELPATTKTHAIIERTANFVCKQGAQFEIVLKAKQAGNSQFDFLRFDHYLNPYYKHILRAMKEGRYTPASEGKQDQQQESKSDESDDDDDGDGNYLHPSLFAPKKCSRLEEIIKPLQVIDPDHPLAALVRKAQQQNNGTAALVTNAEEEHQPSAVATQAEYTSDPNVAAMYYGYCMLPDGTYCLAPPPPGIDASHYYASLPTGMMPAPPASGPPPPPGTTPLDPAVAIPSAPAVGPVTVSAPASAPLPHSAPAPPTSSSRPPQTTVVPPPVVATAAPVAAIIPPPPDIQPVIDKLAEYVARNGVKFETSVRAKNDPRFDFLQSWHQYNSYYEFKKHYFMQKEGLSGQEGSLLYGSGGDSAENSSDKQQDEGKLIKASFAPICFAIKSKENDLLPLEKNRVRLDDDSDEDAIKGDVLEGMELAIGLLEAPREVPQPPLAEEKKPVLSQEELEAKQAKQKLEDRLAAAAREKLAQASKESKERQLQAERKRKAALFLQTLRGPEAEVKRTEETTAAPEPLGSILPISGLLQHTCRIPGFDYEPLENALTRSLNNAASHVTTSTSSSSSRGPERDRDRDRDRDRDRDKRKKKHKRRSRSRSRSRSRSKSKTKHALPSAYRTFRRSRSQSRSPSRRDRRARSPDRKRDEREKESYGPSNYRLGSNPALGRQRSRSRSPHEKKKRKSSKSSHFKGSSCSPSASPNRGRAVSRVSASPSPATSPTSSLGRSRDGSQEKEKQVASTIVSSVQSKITQDLMAKVRAMLAASKGLQPNPS", "length": 958 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P12297-2", "protein_name": "Protein suppressor of white apricot", "gene_name": "su(w[a])", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLPYNVRNAGGGSVGGILRRTGQGSGTGSTILGNGNSPGALGAGKVSSSLENHRQPPLELLVFGYACKIFRDDEKAREMDHGKQLIPWMGDVNLKIDRYDVRGALCELAPHEAPPGGYGNRLEYLSAEEQRAEQLCEEERYLFLYNNEEELRLRQEEDLKRLQQETSGGCFSQVGFQYDGQSAASTSIGGSSTATSQLSPNSEESELPFVLPYTLMMAPPLDMQLPETMKQHAIIEKTARFIATQGAQMEILIKAKQANNTQFDFLTQGGHLQPYYRHLLAAIKAAKFPPAPQTPLDQQNTDKEAPSADDHSEEVAGGRRNPNQVVITVPTIKYKPSANCAYTQLISKIKGVPLQAVLQEDESSNPGNSQHSGGTASPALSCRSEGHNSQGGEFTPVLLQYNGSTFTHEEESSNREQQDDNDVNGGEPPQVELLKNTSALALAQNYSSESEEEEDQVQPEKEEEKKPEPVLTFPVPKDSLRHIIDKTATYVIKNGRQFEETLRTKSVDRFSFLLPANEYYPYYLYKVTGDVDAASKEEKTRKAAAVAAALMSKKGLSFGGAAAAVSGSNLDKAPVSFSIRARDDQCPLQHTLPQEASDEETSSNAAGVEHVRPGMPDSVQRAIKQVETQLLARTAGQKGNITASPSCSSPQKEQRQAEERVKDKLAQIAREKLNGMISREKQLQLERKRKALAFLNQIKGEGAIVGSAVPVVGPNPPESAAGAATADSGDESGDSVRSIPITYFGPDDDDEVGEQRPEMRLIGSTQKDEEDDDEEDGGDLEKYNLLNDDSTNTFTSKPVLPPTAAPPPAAVLLSDDDDVQLVATTSTRSSSSRHLKTHRRSRSRSKNVRSSDSSPSSRESSRRRRQKSSRLSREPSSNPPRKSQHSSTQRKKTPKKRRRSKSRSRSKSIRRSRSISILRNNRRSRSRSPSCRNAEQRRQQDRRRTPTKKSHKRHKRRRRSSSP", "length": 963 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q12872-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "SFSWAP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYGASGGRAKPERKSGAKEEAGPGGAGGGGSRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDHKILIDRYDGRGHLHDLSEYDAEYSTWNRDYQLSEEEARIEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGSYNAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFVAPLGLSVPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAENKSDEKKKSGVSSDNEDDDDEEDGNYLHPSLFASKKCNRLEELMKPLKVVDPDHPLAALVRKAQADSSTPTPHNADGAPVQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPPPGIDVTTYYSTLPAGVTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPPDVQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGDSMQAVSAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSDDDEESKEGQESSSSAANTNPAVAPPCVVVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEAGKIEESPFSVEESSTTPCPLLTGGRPLPTLEVKPPDRPSSKSKDPPREEEKEKKKKKHKKRSRTRSRSPKYHSSSKSRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRVSRSPGASRKRTRSRSPHEKKKKRRSRSRTKSKARSQSVSPSKQAAPRPAAPAAHSAHSASVSPVESRGSSQERSRGVSQEKEAQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS", "length": 951 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3USH5-1", "protein_name": "Splicing factor, suppressor of white-apricot homolog", "gene_name": "Sfswap", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYGAGGGRAKPERKGGVKEEAGPGGTGTGGNRVELLVFGYACKLFRDDERALAQEQGQHLIPWMGDPKILIDRYDGRGHLHDLSAYDAEYATWNRDYQLSEEEARVEALCDEERYLALHTDLLEEEARQEEEYKRLSEALAEDGNYSAVGFTYGSDYYDPSEPTEEEEPSKQREKNEAENLEENEEPFIAPLGLSVPSDVELPPTAKMHAIIERTANFVCKQGAQFEIMLKAKQARNSQFDFLRFDHYLNPYYKFIQKAMKEGRYTVLAESKNEEKKKSGPTSDNEEEDDEEDGSYLHPSLFASKKSSRLEELMKPLKVVDPDHPLAALVRKAQADSSAPAPPTADGTPAQPSQVEYTADSTVAAMYYSYYMLPDGTYCLAPPPPGIDVATYYSTLPAGVTVSSSPGVTTTVPPPPGTTPPPPPTTAEPSSGVTSTTTTTSALAPVAIIPPPPDIQPVIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWHQYNAYYEFKKQFFLQKEGGGSTQAASTAEEAPTETAVEESGEAGEDGAPEGMAETGGRGSGKKEAGSSKSTVDGKLVKASFAPISFAIKAKENDLLPLEKNRVKLDDDSEEDEESRECQESTSSVANPSPAAAPPSVAVEEKKPQLTQEELEAKQAKQKLEDRLAAAAREKLAQASKESKEKQLQAERKRKAALFLQTLKNPLPEAEVGKLEESTFGVEDTGVMPCPLLVGGRTLPILEGKPPERPSNRCRDPPREEEREKKKKKHKKRSRTRSRSPKYHSSSKPRSRSHSKAKHSLPSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRMSGSPGVSRKRTRSRSPHEKKKKRRSRSRTKAKARSQSTSPSKQAAQRPSAHSAHSASISPVESRGSSQERSRGVSQEKDGQISSAIVSSVQSKITQDLMAKVRAMLAASKNLQTSAS", "length": 945 }, "evidence": [ { "id": "F1RFQ9", "url": "https://omabrowser.org/oma/group/F1RFQ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "pmid": "" }, { "name": "mRNA 5'-splice site recognition", "id": "GO:0000395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000395", "evidence": [ { "database": "UniProtKB", "id": "F1RFQ9", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RFQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFQ9" }, { "id": "PS50128", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50128" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SURP motif", "eco_id": "ECO_0000259", "start_pos": 211, "end_pos": 253, "start_aa": "Ile", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 339, 341, 419, 425 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 271, "end_pos": 273 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"length": 1095, "header": "tr|A0A5G2QYD5-1|A0A8X9AEH1_PIG Computationally mapped isoform of Dynein axonemal assembly factor 9 OS=Sus scrofa OX=9823 GN=DNAAF9 PE=4 SV=1 CANONICAL=A0A8X9AEH1-1" }, "locus": { "chromosome": "17", "start_pos": 32434422, "end_pos": 32284853, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073640.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073640.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069893.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069893.2" } ] } }, { "isoform_ac": "A0A8X9AEH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEH1/entry", "sequence": { "sequence": "MDVYPPHRLGLPRARSPGGPGRGSPSVSCSRLRQVQSILTQSSKSQPDGILCILGIDSRYNEGCRELANYLLFGLYNQNTSDFEKSGFSEEVLDDVIILIKSDSVHLYCNPVNYHYLLPYVAHWRNLHFHCMTENEYEDEEAAEEFKIASFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTMKYELQDVSLNLWNVYSKMDPMSLESLLSEDLVAFEHQWASFFANFDTEIPFLLELSESQAGEPFRSYFSHGMISSHITENSPNRQPFVLFGNHSTRENLNAGNFNFPSEGHLVRSTGPSGSFAKHMVVQCVSPKGPLACSRTYFFGATHVPYLGDDNKVPKKTEQMLLSQVYAAVIEAVLAAIACYAKTSSLTKAKEVAEQTLGSGLNSFELMQFKATLRSKMAFHIHAVNNLGRIVPLDSEDSLYFVKTACMSIYDIPDLLGGKGCLGSVVFSESFLTSQILVKEKDGTVTTETSSIILTAAIPRFCSWLVEDTEVKLSEKTQQAVMGDECFLGTFLTRGEGAYLFSSNPQSWPEEGKVHFFSDGLLFSDRHHGSIIISKDHMNSILFYDGDSTSIVAALLIDFKSSLLPHLPVHFHGSNNFLMIALFPKSKIYRTFYSEVFSPWQQQANSGLSLKVIQEDGLSVEQKRLHSNAQKLFSVLSHSAGEKQSPLRLHSARLPDLDGFLQHFAVSSISQEPVMRAHLPVVLQQAEINPTHRIENDKVIISIVTGLPGCHASELCAFLVTLHKEYGRWMVYRQVMDSSECFHAAHFQRYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGYTDVIDVVQALQTHPDPNVKSSFTIGAITVCVEPLSCYMEHRFLFPKCLDQCSQGLVSNVVFTSHTTEQRHPLLVQLQSLIRAANPTAAFILAEDGIITRNEDIELILSENSFWSPQMLRSRYLLYPGWYEGKFDAGSVFPLMVQICVWFGRPLEKTRFMAKCKAMQSSIKPSPFSGNIYHILGKVKFSDSERTMEVCHNTLANSLSIMPILEGPTPPPDSRSTPQGGSGQQECYLVFIGCSLKEESVKDWLRQSAKQGPDPSLHLCTEAAEESPEDQGDADPAGDQEHPCETPPGSPTCRLLL", "length": 1132, "header": "tr|A0A8X9AEH1-1|A0A8X9AEH1_PIG Isoform 1 of Dynein axonemal assembly factor 9 OS=Sus scrofa OX=9823 GN=DNAAF9 PE=4 SV=1 CANONICAL=A0A8X9AEH1-1" }, "locus": { "chromosome": "17", "start_pos": 32433417, "end_pos": 32284853, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007828.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007828.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007617.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007617.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1044, "start_aa": "Thr", "end_pos": 1044, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1044", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 807, "end_pos": 809, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8X9AEH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEH1" }, { "id": "PF25204", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25204" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DAAF9", "eco_id": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003127452" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNK3", "url": "https://www.uniprot.org/uniprotkb/F1RNK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYADM", "url": "https://www.uniprot.org/uniprotkb/F1RNK3", "locus": { "chromosome": "6", "start_pos": 56236311, "end_pos": 56244185, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003253", "url": "https://www.ensembl.org/id/ENSSSCG00000003253" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003253", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003253", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519316", "url": "https://www.ncbi.nlm.nih.gov/gene/100519316", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519316", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519316", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GGMADWC", "url": "https://omabrowser.org/oma/group/GGMADWC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RNK3", "url": "https://www.orthodb.org/?gene=F1RNK3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127452", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127452", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QYN7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF01", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNK3", "url": "https://www.uniprot.org/uniprotkb/F1RNK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNK3-1", "url": "https://www.uniprot.org/uniprotkb/F1RNK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVTVTRTTITTTTSSSSGLGSSTIVGSPRALTQPLGLLRLLQLISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLAYVADLVHSARLVFVRV", "length": 322, "header": "tr|F1RNK3-1|F1RNK3_PIG Isoform 1 of Myeloid associated differentiation marker OS=Sus scrofa OX=9823 GN=MYADM PE=1 SV=1 CANONICAL=F1RNK3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYN7/entry", "sequence": { "sequence": "MWSSRPGIRSKRQVRPEQPPLRQQVLHPPCWRAGGSNLCPSTPEMLPIAVTPQWDLLGDFLSPPSPAPAMPVTVTRTTITTTTSSSSGLGSSTIVGSPRALTQPLGLLRLLQLISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLAYVADLVHSARLVFVRV", "length": 391, "header": "tr|A0A5G2QYN7-1|F1RNK3_PIG Computationally mapped isoform of Myeloid associated differentiation marker OS=Sus scrofa OX=9823 GN=MYADM PE=1 SV=1 CANONICAL=F1RNK3-1" }, "locus": { "chromosome": "6", "start_pos": 56238790, "end_pos": 56237618, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086425.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086425.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069258.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069258.1" } ] } }, { "isoform_ac": "A0A5G2RF01-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF01/entry", "sequence": { "sequence": "MPVTVTRTTITTTTSSSSGLGSSTIVGSPRALTQPLGLLRLLQLISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLAYVADLP", "length": 312, "header": "tr|A0A5G2RF01-1|F1RNK3_PIG Computationally mapped isoform of Myeloid associated differentiation marker OS=Sus scrofa OX=9823 GN=MYADM PE=1 SV=1 CANONICAL=F1RNK3-1" }, "locus": { "chromosome": "6", "start_pos": 56238583, "end_pos": 56236664, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083518.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083518.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073291.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073291.1" } ] } }, { "isoform_ac": "F1RNK3-1", "url": "https://www.uniprot.org/uniprotkb/F1RNK3/entry", "sequence": { "sequence": "MPVTVTRTTITTTTSSSSGLGSSTIVGSPRALTQPLGLLRLLQLISTCVAFSLVASVGAWTGAMGNWSMFTWCFCFAVTLIILIVELAGLQARFPLSWRNFPITYACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATAFSCIACVAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACVIFAFISNPNLYQHQPALEWCVAVYSICFILAAVAILLNLGDCTNVLPIAFPTFLSGLALISVLFYATALVLWPLYQFDQKYGGHPRRSMDPGCGDRHTYYVCPWDRRLAVAILTAINLLAYVADLVHSARLVFVRV", "length": 322, "header": "tr|F1RNK3-1|F1RNK3_PIG Isoform 1 of Myeloid associated differentiation marker OS=Sus scrofa OX=9823 GN=MYADM PE=1 SV=1 CANONICAL=F1RNK3-1" }, "locus": { "chromosome": "6", "start_pos": 56238583, "end_pos": 56237618, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068752.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068752.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069963.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069963.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYN7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519316", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519316", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O35682-1", "protein_name": "Myeloid-associated differentiation marker", "gene_name": "Myadm", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVTVTRTTITTTTSSSTTVGSARALTQPLGLLRLLQLISTCVAFSLVASVGAWTGPMGNWAMFTWCFCFAVTLIILIVELGGLQAHFPLSWRNFPITFACYAALFCLSSSIIYPTTYVQFLAHGRTRDHAIAATTFSCVACLAYATEVAWTRARPGEITGYMATVPGLLKVFETFVACIIFAFISEPLLYNQKPALEWCVAVYAICFILAGVTILLNLGDCTNVLPIPFPTFLSGLALLSVLFYATAIVLWPLYQFDQRYQGQPRRSMDPSCTRSISYIQPNTVCFWDRRLAVSILTGINLLAYVSDLVYSTRLVFVKV", "length": 320 }, "evidence": [ { "id": "F1RNK3", "url": "https://omabrowser.org/oma/group/F1RNK3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6VBQ5-1", "protein_name": "Myeloid-associated differentiation marker", "gene_name": "Myadm", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVTVTRTTITTTSSSSTTVGSARALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGPMGNWAMFTWCFCFAVTLIILIEELGGFQARFPLSWRNFPITFACYAALFCLSSSIIYPTTYVQFLPHGRSRDHAIAATTFSCVACLAYATEVAWTRARPGEITGYMATVPGLLKVFETFVACIIFAFISEPSLYQQRPALEWCVAVYAICFILAAVTVLLNLGDCTNMLPIPFPTFLSGLALLSVLLYATAIVLWPLYQFDQRYNSQPRRSMDPSCSRSYVQPNEVCNWDRRLAVSILTGINLLAYVSDLVYSTRLVFVKV", "length": 318 }, "evidence": [ { "id": "F1RNK3", "url": "https://omabrowser.org/oma/group/F1RNK3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96S97-1", "protein_name": "Myeloid-associated differentiation marker", "gene_name": "MYADM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVTVTRTTITTTTTSSSGLGSPMIVGSPRALTQPLGLLRLLQLVSTCVAFSLVASVGAWTGSMGNWSMFTWCFCFSVTLIILIVELCGLQARFPLSWRNFPITFACYAALFCLSASIIYPTTYVQFLSHGRSRDHAIAATFFSCIACVAYATEVAWTRARPGEITGYMATVPGLLKVLETFVACIIFAFISDPNLYQHQPALEWCVAVYAICFILAAIAILLNLGECTNVLPIPFPSFLSGLALLSVLLYATALVLWPLYQFDEKYGGQPRRSRDVSCSRSHAYYVCAWDRRLAVAILTAINLLAYVADLVHSAHLVFVKV", "length": 322 }, "evidence": [ { "id": "F1RNK3", "url": "https://omabrowser.org/oma/group/F1RNK3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RNK3", "url": "https://www.uniprot.org/uniprotkb/F1RNK3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RNK3", "url": "https://www.uniprot.org/uniprotkb/F1RNK3" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "F1RNK3", "url": "https://www.uniprot.org/uniprotkb/F1RNK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RNK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNK3" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 163, "start_aa": "Ala", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RLJ3-1", "uniprot_ac": "F1RLJ3", "uniprot_id": "F1RLJ3_PIG", "mass": { "chemical_mass": 71539.0, "monoisotopic_mass": 71539.0 }, "refseq": {}, "gene_names": [ { "name": "ENTREP3", "type": "recommended", "evidence": [ { "id": "F1RLJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3" } ] } ], "protein_names": [ { "name": "Endosomal transmembrane epsin interactor 3", "type": "synonym", "evidence": [ { "id": "F1RLJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RLJ3", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ENTREP3", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3", "locus": { "chromosome": "4", "start_pos": 94581585, "end_pos": 94575793, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006521", "url": "https://www.ensembl.org/id/ENSSSCG00000006521" } ] } } ], "crossref": [ { "id": "F1RLJ3", "url": "https://alphafold.ebi.ac.uk/entry/F1RLJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006521", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006521", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ICCIQIF", "url": "https://omabrowser.org/oma/group/ICCIQIF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RLJ3", "url": "https://www.orthodb.org/?gene=F1RLJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17615:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17615:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2F2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2F2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2F2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLJ3", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESVKRSCPSWAGFSLAFSGVVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRDCSLEGKVCVCCPTVPLLRPCPESGQELKVAPNSTCDEARGALKNLLFSVCGLTVCAAIICTLSAIVCCIQIFSLDLVHTQLAPERSVSGPLGPLGCTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDSSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLSAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRPAAAPTPRPPARRFSDSSGSLTPPGHRPPHPAPPPPLLLPRSHSDPGITTSSNTAEFRDLYTKVLEEEAASISSADTGLCSEACLFRLAHCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVARFLQMSRKAPDPNGNGTHGHKQVPRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSGRRLERGTRPQSLSLNGGSRETGL", "length": 669, "header": "tr|F1RLJ3-1|F1RLJ3_PIG Isoform 1 of Endosomal transmembrane epsin interactor 3 OS=Sus scrofa OX=9823 GN=ENTREP3 PE=3 SV=3 CANONICAL=F1RLJ3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYP3/entry", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESVKRSCPSWAGFSNLLFSVCGLTVCAAIICTLSAIVCCIQIFSLDLVHTLAPERSVSGPLGPLGCTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDSSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLSAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRPAAAPTPRPPARRFSDSSGSLTPPGHRPPHPAPPPPLLLPRSHSDPGITTSSNTAEFRDLYTKVLEEEAASISSADTGLCSEACLFRLAHCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVARFLQMSRKAPDPNGNGTHGHKQVPRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSGRRLERGTRPQSLSLNGGSRETGL", "length": 572, "header": "tr|A0A5G2QYP3-1|F1RLJ3_PIG Computationally mapped isoform of Endosomal transmembrane epsin interactor 3 OS=Sus scrofa OX=9823 GN=ENTREP3 PE=3 SV=1 CANONICAL=F1RLJ3-1" }, "locus": { "chromosome": "4", "start_pos": 94581021, "end_pos": 94576363, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089985.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089985.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067062.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067062.1" } ] } }, { "isoform_ac": "A0A5G2R2F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2F2/entry", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESVKRSCPSWAGFSISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRDCSLEGKVCVCCPTVPLLRPCPESGQELKVAPNSTCDEARGALKNLLFSVCGLTVCAAIICTLSAIVCCIQIFSLDLVHTQLAPERSVSGPLGPLGCTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDSSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLSAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRPAAAPTPRPPARRFSDSSGSLTPPGHRPPHPAPPPPLLLPRSHSDPGITTSSNTAEFRDLYTKVLEEEAASISSADTGLCSEACLFRLAHCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVARFLQMSRKAPDPNGNGTHGHKQVPRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSGRRLERGTRPQSLSLNGGSRETGL", "length": 650, "header": "tr|A0A5G2R2F2-1|F1RLJ3_PIG Computationally mapped isoform of Endosomal transmembrane epsin interactor 3 OS=Sus scrofa OX=9823 GN=ENTREP3 PE=3 SV=1 CANONICAL=F1RLJ3-1" }, "locus": { "chromosome": "4", "start_pos": 94581021, "end_pos": 94576363, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086273.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086273.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064714.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064714.1" } ] } }, { "isoform_ac": "F1RLJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3/entry", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESVKRSCPSWAGFSLAFSGVVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRDCSLEGKVCVCCPTVPLLRPCPESGQELKVAPNSTCDEARGALKNLLFSVCGLTVCAAIICTLSAIVCCIQIFSLDLVHTQLAPERSVSGPLGPLGCTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDSSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLSAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRPAAAPTPRPPARRFSDSSGSLTPPGHRPPHPAPPPPLLLPRSHSDPGITTSSNTAEFRDLYTKVLEEEAASISSADTGLCSEACLFRLAHCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVARFLQMSRKAPDPNGNGTHGHKQVPRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSGRRLERGTRPQSLSLNGGSRETGL", "length": 669, "header": "tr|F1RLJ3-1|F1RLJ3_PIG Isoform 1 of Endosomal transmembrane epsin interactor 3 OS=Sus scrofa OX=9823 GN=ENTREP3 PE=3 SV=3 CANONICAL=F1RLJ3-1" }, "locus": { "chromosome": "4", "start_pos": 94581021, "end_pos": 94576363, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007141.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007141.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006948.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006948.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 456, "start_aa": "Thr", "end_pos": 456, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr456", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYP3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IZW2-1", "protein_name": "Protein ENTREP3 isoform X1", "gene_name": "fam189b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPSPSDSSSVASMSGSRALSGSRRGMSGRTSARVLLYLGLCHLALGAMVLAFSFTSLAFTSSPRVRQSCPFWAGFFVVASGVVGVISWRRPFTLVVSLFMLLSAVCVILSLAGSMLSCQNAQMVKSYVDCKVENRLCLCCEPKSCSLKEDDTLVLYQHKDCHAVRHQLKDLLFSACGLSILSTIICTLSTVTCSIHIFSLDLLHLLAPHRSRSVNPECTTPQDAFLSNMMDFEEFVPPIPPPPYYPPEYTCSSETDAQSVTYNGSMESPVPLYPTDCPPPYEAVMGQRAPSQATVYDTQAGELSGERGTSTAFSGEVSMDSGSLLMSEIVDIPDDSSPSEDSCLMEVGVGVRARSRGASEGGEGGECANFRSSPQHPEGMVAAATGRRCFRGERSNSCSSPSTYNTSTYRSPVLRRQALLASSCSQLEFLTVSQHSSIPEIRVRPCTPSRRGSSSVFSNPPSTAPSGPAQDRPDLTVQANPPRPVFREQIVRDRKNSDGFLPLLRSHSEPGLSSSTDTGDFSLSGGSKGVSEGGSQTSSETGVLSGAGLLPRSSLALPASLPRKGSIKALSSRLPIKQVPATSLRLPKDCARSLGDLKVTRVLVQRFLQRSKRNLAPASDHTANCTQGPKRRTGGESSLPLEQVLRNSMGANRGQQQHVHHHCRGHHHSHSDSRHNARRHDDDPARARGIHLRSCGDLSSTSVVSLRRLHPPHGSSGAFYSESAL", "length": 725 }, "evidence": [ { "id": "F1RLJ3", "url": "https://omabrowser.org/oma/group/F1RLJ3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9TND7-1", "protein_name": "Endosomal transmembrane epsin interactor 3", "gene_name": "ENTREP3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGVLVVTFSMVASSITTTESVKRSCPSWAGFSLAFSGVVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFQECNLDGKVCVCCPSVRLLRPCPESGQELKIALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCIQIFSLDLVHTLAPERSVSGPLGPLGCTSSPPDPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDGSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPSLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRPAAAPSPRAPARRFSDSSGSLTPPGHRPPHPAPPPPLLLPRSHSDPGITTSSNTAEFRDLYTKVLEEEAASVSSADTGLCSEACLFRLAHCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQMSRKAPDPNGNGAHGHKQVPRSPWGRPGQESLHLRSCGDLSSGSSLRRLLSGRRLERATRPHSLSLNGGSRETGL", "length": 668 }, "evidence": [ { "id": "F1RLJ3", "url": "https://omabrowser.org/oma/group/F1RLJ3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3Z8J6-1", "protein_name": "Endosomal transmembrane epsin interactor 3", "gene_name": "Entrep3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVVTFSMVASSVTTTESIKRSCPSWAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCPPIPLHRPCPEWGQELKVAFNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHVQLAPERSVSGPLGSLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVPSIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSTAPPPARAPVRRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDIADFRDLYTKVLEEEAASISSADTAGLCSEACLFRLARCPSPKLLRAHSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQLSRKSPDPAGTGAHGHKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSARRLEHGIRPHSLSLNGGSRETGL", "length": 670 }, "evidence": [ { "id": "F1RLJ3", "url": "https://omabrowser.org/oma/group/F1RLJ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81408-1", "protein_name": "Protein ENTREP3", "gene_name": "ENTREP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLVQVLLGILVVTFSMVASSVTTTESIKRSCPSWAGFSLAFSGVVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFQQCSLEGKVCVCCPSVPLLRPCPESGQELKVAPNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCIQIFSLDLVHTLAPERSVSGPLGPLGCTSPPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDGSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEESPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGGRPAAAPPTRAPTRRFSDSSGSLTPPGHRPPHPASPPPLLLPRSHSDPGITTSSDTADFRDLYTKVLEEEAASVSSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPAPAHSLGDLKGSWPGRGLVTRFLQISRKAPDPSGTGAHGHKQVPRSLWGRPGRESLHLRSCGDLSSSSSLRRLLSGRRLERGTRPHSLSLNGGSRETGL", "length": 668 }, "evidence": [ { "id": "F1RLJ3", "url": "https://omabrowser.org/oma/group/F1RLJ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5HZJ5-1", "protein_name": "Protein ENTREP3", "gene_name": "Entrep3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMPSPSDSSRSLTSRPSTRGLTHLRLHRPWLQALLTLGLAQVLLGILVITFSMVASSVTTTESIKRSCPSWAGFSLAFSGLVGIVSWKRPFTLVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFRECSMEGKVCVCCPPIPLHRPCPEWGQELKVALNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCVQIFSLDLVHMQLAPERSVSGPLGPLACTSSPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSITYNGSMDSPVPLYPTDCPPSYEAVMGLRRDSQATLFDPQLHDGSCVCERVASIVDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRAGYCLSLDCGLRGPFEDSPLPRRPPRAARSYSCSAPEAPPPLGAPTAARSCHRLEGWPPWVGPCFPELRRRVPRGGSRSAAPPPARAPARRFSDSSGSLTPPGHRPPHRTPPPPLLLPRSHSDPGITTSSDIADFRDLYTKVLEEEAASVSSADTGLCSEACLFRLARCPSPKLLRARSAEKRRPVPTFQKVPLPSGPTPAHSLGDLKGSWPGRGLVTRFLQLSRRSPDPTGTGAHGYKQVRRSPWGRPGRESLHLRSCGDLSSGSSLRRLLSARRLEHGIRPHSLSLNGGSRETGL", "length": 669 }, "evidence": [ { "id": "F1RLJ3", "url": "https://omabrowser.org/oma/group/F1RLJ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RLJ3", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RLJ3", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "WW domain binding", "id": "GO:0050699", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050699", "evidence": [ { "database": "UniProtKB", "id": "F1RLJ3", "url": "https://www.uniprot.org/uniprotkb/F1RLJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RLJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 669, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RLJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RLJ3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 456 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 605, "end_pos": 607 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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"type": "synonym", "evidence": [ { "id": "F1RKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKX2/entry#names_and_taxonomy" } ] }, { "name": "GDP-mannose-dolichol diphosphochitobiose mannosyltransferase", "type": "synonym", "evidence": [ { "id": "F1RKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKX2/entry#names_and_taxonomy" } ] }, { "name": "chitobiosyldiphosphodolichol beta-mannosyltransferase", "type": "synonym", "evidence": [ { "id": "XP_013851121", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851121" } ] } ], "function": [ { "annotation": "Mannosyltransferase that operates in the biosynthetic pathway of dolichol-linked oligosaccharides, the glycan precursors employed in protein asparagine (N)-glycosylation. The assembly of dolichol-linked oligosaccharides begins on the cytosolic side of the endoplasmic reticulum membrane and finishes in its lumen. The sequential addition of sugars to dolichol pyrophosphate produces dolichol-linked oligosaccharides containing fourteen sugars, including two GlcNAcs, nine mannoses and three glucoses. Once assembled, the oligosaccharide is transferred from the lipid to nascent proteins by oligosaccharyltransferases. Catalyzes, on the cytoplasmic face of the endoplasmic reticulum, the addition of the first mannose residues to the dolichol-linked oligosaccharide chain, to produce Man1GlcNAc(2)-PP-dolichol core oligosaccharide. Man1GlcNAc(2)-PP-dolichol is a substrate for ALG2, the following enzyme in the biosynthetic pathway.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R104", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R104#function" }, { "database": "UniProtKB", "id": "ARBA00056362", "url": "https://www.uniprot.org/uniprotkb/ARBA00056362#function" }, { "database": "UniProtKB", "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ALG1", "url": "https://www.uniprot.org/uniprotkb/F1RKX2", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000007919", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007919", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03816", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03816", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524193", "url": "https://www.ncbi.nlm.nih.gov/gene/100524193", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524193", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524193", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CKLIIDW", "url": "https://omabrowser.org/oma/group/CKLIIDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RKX2", "url": "https://www.orthodb.org/?gene=F1RKX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13036:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13036:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13579", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13579", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446193", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013851121", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851121", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13865", "url": "https://www.rhea-db.org/rhea/13865", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R104", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R104", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R104-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R104-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8B3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKX2-1", "url": "https://www.uniprot.org/uniprotkb/F1RKX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASYVALLAVSVTLPLLLLLLLLVAWKRWRWGRASRHVMVVVLGDLGRSPRMQYHALSLAKNGFSVTLLGFCNSRPREELLQSDRIQIVSLTELPRLTVGPHILQYGVKVVFQAVHLLWKLMCRDPAAYIFLQNPPGLPAIAVCWFAACLCGSKLVIDWHNYGYSIMGLVHGPGHRLVLLAKWYEKLCGRLSHLNLCVTNAMREDLAENWGIKAVTVYDKPASFFKETPLDLQHQLFMKLSRIYSVFRARSEPSDLDMERSAFTERDAQSAVVTHLHGRPALLVSSTSWTEDEDFSVLLAALEKFEQLINDGESLPSLVCVITGKGPLKEYYSHLICQKRFQHIQVCTPWLEAQDYPLLLGSADLGVCLHRSSSGLDLPMKVVDMFGCCLPVCAVNFPCLHELVKHEENGLVFEDAQGLAAQLQLLLSKFPDPAGKLNRFRENLRESEQLRWDESWKQTVLPLISDT", "length": 468, "header": "tr|F1RKX2-1|F1RKX2_PIG Isoform 1 of Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG1 PE=3 SV=3 CANONICAL=F1RKX2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R104-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R104/entry", "sequence": { "sequence": "MAASYVALLAVSVTLPLLLLLLLLVAWKRWRWGRASRHVMVVVLGDLGRSPRMQYHALSLAKNGFSVTLLGFCNSRPREELLQSDRIQIVSLTELPRLTVGPHILQYGVKVVFQAVHLLWKLMCRDPAAYIFLQNPPGLPAIAVCWFAACLCGSKLVIDWHNYGYSIMGLVHGPGHRLVLLAKWYEKLCGRLSHLNLCVTNAMREDLAENWGIKAVTVYDKPASFFKETPLDLQHQLFMKLSRIYSVFRARSEPSDLDMERSAFTERDAQSAVVTHLHGRPALLVSSTSWTEFEQLINDGESLPSLVCVITGKGPLKEYYSHLICQKRFQHIQVCTPWLEAQDYPLLLGSADLGVCLHRSSSGLDLPMKVVDMFGCCLPVCAVNFPCLHELVKHEENGLVFEDAQGLAAQLQLLLSKFPDPAGKLNRFRENLRESEQLRWDESWKQTVLPLISDT", "length": 455, "header": "tr|A0A5G2R104-1|F1RKX2_PIG Computationally mapped isoform of Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG1 PE=3 SV=1 CANONICAL=F1RKX2-1" }, "locus": { "chromosome": "3", "start_pos": 37340372, "end_pos": 37325394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081289.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081289.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070793.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070793.1" } ] } }, { "isoform_ac": "A0A8W4F8B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8B3/entry", "sequence": { "sequence": "MAASYVALLAVSVTLPLLLLLLLLVAWKRWRWGRASRHVMVVVLGDLGRSPRMQYHALSLAKNGFSVTLLGFCNSRPREELLQSDRIQIVSLTELPRLTVGPHILQYGVKVVFQAVHLLWKLMCRDPAAYIFLQNPPGLPAIAVCWFAACLCGSKLVIDWHNYGYSIMGLVHGPGHRLVLLAKWYEKLCGRLSHLNLCVTNAMREDLAENWGIKAVTVYDKPASFFKETPLDLQHQLFMKLSRIYSVFRARSEPSDLDMERSAFTERDAQSAVVTHLHGRPALLVSSTSWTEDEDFSVLLAALEKFEQLINDGESLPSLVCVITGSADLGVCLHRSSSGLDLPMKVVDMFGCCLPVCAVNFPCLHELVKHEENGLVFEDAQGLAAQLQLLLSKFPDPAGKLNRFRENLRESEQLRWDESWKQTVLPLISDT", "length": 431, "header": "tr|A0A8W4F8B3-1|F1RKX2_PIG Computationally mapped isoform of Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG1 PE=3 SV=1 CANONICAL=F1RKX2-1" }, "locus": { "chromosome": "3", "start_pos": 37340372, "end_pos": 37325394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098669.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098669.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075547.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075547.1" } ] } }, { "isoform_ac": "F1RKX2-1", "url": "https://www.uniprot.org/uniprotkb/F1RKX2/entry", "sequence": { "sequence": "MAASYVALLAVSVTLPLLLLLLLLVAWKRWRWGRASRHVMVVVLGDLGRSPRMQYHALSLAKNGFSVTLLGFCNSRPREELLQSDRIQIVSLTELPRLTVGPHILQYGVKVVFQAVHLLWKLMCRDPAAYIFLQNPPGLPAIAVCWFAACLCGSKLVIDWHNYGYSIMGLVHGPGHRLVLLAKWYEKLCGRLSHLNLCVTNAMREDLAENWGIKAVTVYDKPASFFKETPLDLQHQLFMKLSRIYSVFRARSEPSDLDMERSAFTERDAQSAVVTHLHGRPALLVSSTSWTEDEDFSVLLAALEKFEQLINDGESLPSLVCVITGKGPLKEYYSHLICQKRFQHIQVCTPWLEAQDYPLLLGSADLGVCLHRSSSGLDLPMKVVDMFGCCLPVCAVNFPCLHELVKHEENGLVFEDAQGLAAQLQLLLSKFPDPAGKLNRFRENLRESEQLRWDESWKQTVLPLISDT", "length": 468, "header": "tr|F1RKX2-1|F1RKX2_PIG Isoform 1 of Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG1 PE=3 SV=3 CANONICAL=F1RKX2-1" }, "locus": { "chromosome": "3", "start_pos": 37340372, "end_pos": 37325394, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008679.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008679.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008456.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008456.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R104", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R104" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524193", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524193", "resource": "KEGG Pathway" }, { "id": "R-SSC-446193", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "resource": "Reactome", "description": "Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z1B7-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "ALG1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAGGAALAVAVVLVVAAALWRRQAVRGAGRVCVAVLGDLGRSPRMQYHALSLARHGRGVALLGYFQTRPHRDVLSSGEIRVVPLSELRCLRVGPKLFQYVVKVVAQTVQLLYTMLRMDPPSYVLLQNPPGLPSIAVAWVACLFWRSKLIIDWHNYGYTIMSLNHGRNHPLVLIAKWYEKLFGRLSDYNLCVTDAMKEDLWVNCNIKAVTLYDRPASYFKETPLELQHQLYLKLAKDYEPFKPHTESVSWNAERSAFTERDEKSGDVIKSRGRPALLISSTSWTEDEDFSVLLKALEDYEQYVNEGVKLPALVCVITGKGPLKEYYNGLIKKLHFKHIQICTPWLEAEDYPVLLGSADLGVCLHKSSSGLDLPMKVVDMFGCCLPVCAIYFECLHELVKHNENGLIFRDSHELAEQLKMLFLGFPTLEGKLQEFRKNLRASKQLSWDESWDHTVLPLLSQTE", "length": 462 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A5S6-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "Alg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASCVALLALLLLLSVLLVGLWKRGRQAGRARHVVVVVLGDVGRSPRMQYHALSLAQSGFSVTLLGFYNSKPRDELLQSDRIQIVKLTDLRGLGAGPRILQYGVKVVFQAVYLLWKMMRTDPAAYIFLQNPPGLPAIAVCWFVCCICGSKLVIDWHNYGYSIMGLVHGPRHPIVLLAKWYEKFFGRLSHLNLCVTHAMREDLAENWCLRAVTLYDKPASFFKETPLDLQHELFMKLSRTYSPFQSCSEPSDPDTERSAFTERDSQSRVVRRLHGRPALLVSSTSWTEDEDFSILLRALEKFEQQALSGDSLPSVVCVITGKGPLREHYRHLISQKHLQHVQFCTPWLEAEDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCYLPVCAVNFKCLHELVRHGENGLVFKDAEELATQLQMLFSKFPDPAGKLSQFRKRLQESEQLRWDESWQQTVLPLLVTHK", "length": 465 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N2J7-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "ALG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAASVVALLALSLFLPPLLLVAWKHWRWGRTARHVIVVVLGDVGRSPRMQYHALSLAKSGFSVTLLGFCNSKPHDELLQSDKIQIVGLTDLQRLAVGPHVLQYGVKVVFQAVHLLWKLMCTEPAAYIFLQNPPGLPAIVVCWFAGCLRGSKLVVDWHNYGYSIMGLVHGPSHPLVLLAKWYEKLCGRLSHLNLCVTNAMRDDLAENWGIKAVTVYDKPASFFKETPLDLQHQLFVKLSHTYPVFRACSESSDPGTERSAFTERDALSGAVTHLCGRPALLVSSTSWTEDEDFSILLAALEKFEHLIDSGESLPSLVCVITGKGPLKDYYSRLICQKGFRHIQVCTPWLEAEDYPLLLGSADLGVCLHRSSSGLDLPMKVVDMFGCCLPVCAVKFQCLHELVKHEENGLVFEDSEELAVQLQTLFSKFPDPAGKLYQFRESLRESEQLRWDESWERTVLPLISDT", "length": 464 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P16661-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "ALG1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFLEIPRWLLALIILYLSIPLVVYYVIPYLFYGNKSTKKRIIIFVLGDVGHSPRICYHAISFSKLGWQVELCGYVEDTLPKIISSDPNITVHHMSNLKRKGGGTSVIFMVKKVLFQVLSIFKLLWELRGSDYILVQNPPSIPILPIAVLYKLTGCKLIIDWHNLAYSILQLKFKGNFYHPLVLISYMVEMIFSKFADYNLTVTEAMRKYLIQSFHLNPKRCAVLYDRPASQFQPLAGDISRQKALTTKAFIKNYIRDDFDTEKGDKIIVTSTSFTPDEDIGILLGALKIYENSYVKFDSSLPKILCFITGKGPLKEKYMKQVEEYDWKRCQIEFVWLSAEDYPKLLQLCDYGVSLHTSSSGLDLPMKILDMFGSGLPVIAMNYPVLDELVQHNVNGLKFVDRRELHESLIFAMKDADLYQKLKKNVTQEAENRWQSNWERTMRDLKLIH", "length": 449 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P90522-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "alg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNRVAVVVLGDIGRSPRMQYHSMSLSKLENTKVTLIGYRESEPHPQIVNNDSITIEPLKPFPISMSNSFKKIPLISIFMWPLLAICKVLFQIIQLMYVLLVKVPSPLNTILVQSPPAIPTIFVMQIVCWIRGVHLVIDWHNLGYTLLKLSLSKSDNHPIIRLAKFIERYFAKNAYAHLFVTNEMKIQLVRDWNLKGKTFVFHDKASPIFKSLTDREQEEFLKTFINKYSIKGEDKVYIESVISKKSIRNPKQQTSIIISSTSWTQDEDFSILLDAIVKYDIEHAINNNNNKVEEAQDESVVLAENLLFIITGKGPQKEYYQEKINSLSLKKSRIITVWLDSEDYPKLLACCDLGVSLHNSSSGIDLPMKVVDMFGCCLPVLAIDFKCIGELVKVNYNGFLFKDSDQLHQLLNQLFTHPTNNNTITNTNNNKNLILEKMRKNLTKDRETDTWESNWLTIKPLFIPSSSSSSSSSSSSSSSSSSSSSSNSKSKKD", "length": 493 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8L7M0-1", "protein_name": "UDP-glycosyltransferase TURAN", "gene_name": "TUN", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGKRGRACVVVLGDLGRSPRMQYHALSLARQASFQVDIVAYGGSIPHEAVLNHPSIHIHTMAQPRFIQYFPKILYPVTLLLKAFIQFTMLLWFLFVKVPAPDIFLVQNPPSVPTLIAVKWASSWRRAAFVVDWHNFGYTLLALSLGRNNLLVSLYRWSENHYGKMATGSLCVTKAMQHELDQNWGVRAKVLYDQPPEFFRPALLEERHELFCRVRKDLCHPIGVYDFISRELENQELNETLFTTKFNADISLKQNRPALVVSSTSWTPDENFGILLEAAVMYDRRVAARSKGSETAEISEEQHHYPNLLFIITGKGPEKEMYEEKIKRLNLRHVAFRTMWLAAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCSVSYSCIQELVKDGKNGLLFSSSSELADQLLILFKGFPGNCDALMSLKAGAMETGSSGRWATEWEDCAKPLITQVVSQIADS", "length": 465 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q921Q3-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "Alg1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASCVALLVLALLLLVLLLGLWKRGRQTGRARHMVVVVLGDVGRSPRMQYHALSLAQSGFSVTLLGFYNSKPRDELLQNDRIRIVKLTDLRGLGAGPRILQYGVKVVFQAVYLLWKMMRMDPAAYIFLQNPPGLPAIAVCWFVGCICGSKLVIDWHNYGYSIMGLVHGPRHPIVLLAKWYEKFFGRLSHLNLCVTNAMREDLAENWCVRAVTLYDKPASFFKETPLDLQHELFMKLSHTYSPFQSCSDPSHPDTERSAFTERDCQSGVVRRLHGRPALLVSSTSWTEDEDFSILLRALEKFEQQALTGDSLPSLVCVITGKGPLREHYRHLISQKHLQHVRFCTPWLEAEDYPLLLGSADLGVCLHMSSSGLDLPMKVVDMFGCHLPVCAVNFKCLHELVRHGENGLVFKDAEELAAQLQMLFSKFPDPAGKLSQFRKKLQESGQQRWDESWQHTVLPLLAHSQMTPRPHPPCGHPSCRGF", "length": 482 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BT22-1", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene_name": "ALG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHGFSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMWREPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT", "length": 464 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VEE9-1", "protein_name": "2.4.-.-", "gene_name": "Alg1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPLEELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPSFLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSPLIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQFHPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYRPQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGKGPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSGLDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRIWFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFL", "length": 446 }, "evidence": [ { "id": "F1RKX2", "url": "https://omabrowser.org/oma/group/F1RKX2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chitobiosyldiphosphodolichol beta-mannosyltransferase activity", "id": "GO:0004578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004578", "evidence": [ { "database": "UniProtKB", "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" } ], "pmid": "" }, { "name": "mannosyltransferase activity", "id": "GO:0000030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000030", "evidence": [ { "database": "UniProtKB", "id": "F1RKX2", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13865", "name": "", "equation": "an N,N'-diacetylchitobiosyl-diphospho-di-trans,poly-cis-dolichol + GDP-alpha-D-mannose = a beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc-diphospho-di-trans,poly-cis-dolichol + GDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13865", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13865" } ] }, { "id": "R-SSC-446218", "name": "Addition of the first mannose to the N-glycan precursor by ALG1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-449293" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-446218", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446218" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-449293", "participant_name": "N,N'-DCDOLDP [cytoplasmic side of endoplasmic reticulum membrane]", "crossref": [ { "id": "18341", "database": "ChEBI", "url": "" }, { "id": "C04537", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" }, { "id": "PF00534", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase family 1", "eco_id": "ECO_0000259", "start_pos": 281, "end_pos": 445, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RKX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKX2" }, { "id": "PF13579", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13579" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyltransferase subfamily 4-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 216, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00012RZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00017IP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00025HU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00025YC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00026MO", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G00028MO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00029MO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00030HB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00030MO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00056HH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00085FR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00091UN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00104PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00113FP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00123NG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00152SF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00152UP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00155YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00167VE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00168JC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00175UH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00176HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00183XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00186OS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00193HL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00201AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00210ZX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00211WY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00212RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00219DO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00221CZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00227RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00230CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00231IQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00231WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00247JV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00247PL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00249IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00279YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00281HB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00301IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00318AV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00320ZP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00328CG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00330GX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00335DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00340NM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00348IY", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G00349CA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00357HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00361LC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00361YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00368HM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00369RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00383YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00396IE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00412SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00413UF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00420CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00429OU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00432WV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00433KW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00438EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00451UT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00463XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00468KU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00470UO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00471UP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00480IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00480KJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00480NH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00484DO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00487XO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00491BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00492CQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00500HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00503EE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00504PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00504PZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00511BF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00514XC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00519UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00530IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00531ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00534LI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00536FZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00544JF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00545NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00545SU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00551JZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00553AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00565QJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G00582VL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00584KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00584LL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00588HO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00590SY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00591PZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00594AV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00598SQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00606LX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00618HB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00624KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00629YK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00636QL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00644ZZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00645SW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00646SN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00647HI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00650AC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00662IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00662UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00666EC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00669WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00670OT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00677JU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00691NS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00695JO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00706AL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00706QN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00706VT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00706YM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00709CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00727QV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00738BQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00740UU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00743WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00745XU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00747UC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00748RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00767OE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00780PN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00797ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00798PL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00800WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00805TZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00810PC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00814BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00817BI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00822CX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00826SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00828CZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00830CM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00835TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00842OY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00850LT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00855BY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00864TV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00868ZN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00875VP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00876GU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00883DO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00883ZT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G00884ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00886GB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00888JR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00893FE", "type": 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"Triantennary" }, { "glytoucan_ac": "G00955WX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00966RI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00970XH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00978TF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00979HB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00982CE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00982QD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00986YT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00995HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00998NI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01001RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01012JB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01023RC", "type": "N-linked", 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"N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01100DE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01107YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01120GS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01123UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01125EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01158PQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01163CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01169EW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01169IB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01178HS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01180ZJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01181WH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01186OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01208GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01218JA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01220PX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01221DA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01223AA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01223IC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01233YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01239JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01244DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01250UT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01255GI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01260KO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01260RY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01264EA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01265XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01275YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01295AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01297CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01300OI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01304XG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01304ZB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01308XT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01310VF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01315TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01323LL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01338AS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01342FO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01348GG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01354KL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01359JE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01359SY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01361CV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01364WM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01367ZS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01375NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01378OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01385UC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01386NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01394CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01398HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01406RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01414CL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01416SG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01422KB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01424EN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01432LC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01450UB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01450VD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01454UB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01465MJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01472KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01473PI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01473WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01476WA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01489UZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01510MQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01512NR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01521YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01522FD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01543ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01553JA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01571OF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01578LK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01587DQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01590HD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01597IE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01600VV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01609YG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01613KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01621RQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01631SU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01654FP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01657DW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01659NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01659RK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01668VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01669LU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01670UQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01674EC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01680CB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01681JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01682GA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01685IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01701XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01726PL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01727MH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01727PW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01730TA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01733NS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01734XU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01750CE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01769FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01772UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01789AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01791PK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01803DO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01817YC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01818NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01818TY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01827FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01828CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01837GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01851EU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01855OX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01856RL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01862YG", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G01863JX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01868JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01880LA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01891JS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01912KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01912QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01914HM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01914VS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01917CF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01919UV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01923XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01935FK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01946CN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01954BU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01954TO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01954ZH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G01959AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01962HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01962RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01978EJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01989KK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01996OW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G01999JH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02000AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02018EI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02021XC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02025MF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02038EU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02041MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02050BR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02057LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02063GL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G02076VP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02081QK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02106OV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02117MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02122FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02132BT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02133IK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02151HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02152MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02156UW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02162DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02162HB", "type": "N-linked", "subtype": "Other" }, { 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"G07419LN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07424WI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G07429FY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07433WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07438FT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07438RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07441NQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07445MV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07447EL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G07451AO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07456BZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G07456LY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07462LM", "type": "N-linked", "subtype": 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"N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07534RC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07558KL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07562SI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G07568IR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07572HM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07572HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07584GT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07587GY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07589QZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07612TX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G07617FP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G07623QY", "type": "N-linked", "subtype": "Core-fucosylated" 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12659ID", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12679LF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12679OE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G12683SW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12686TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12699AI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12699VT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12704ID", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12704RG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G12708JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12715AH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G12715RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12727SF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G12740VA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12743GW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12746TT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12749IL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G12757LB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12762FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12762YM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12772BG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12775AE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12775RU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G12784YW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12788IH", "type": "N-linked", "subtype": 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12894CE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12895HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12900SG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G12902VJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12906ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12920QL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12925HU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12932QT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12933YP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12951NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12953IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12968JL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12971II", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12976MZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12977AR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G12985JK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G12986NJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12991XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12999BC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13006TG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13030IT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13047JW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13049QY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13052PI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13054AU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13055JW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13064UV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13068CJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13074BX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13074YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13077RN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13088HS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13091NP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13095WF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13113SB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13123UI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13135UM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13144BT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13146JE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13151XE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13156PQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13165FV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13168NE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13173KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13178HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13181ZZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13185SY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13186PZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13196IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13197FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13210XL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13213HD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13215FW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13231QF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13235YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13239GI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13249MW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13251BI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13257IK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13267ZY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13269KZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13282WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13284GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13290KJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13291XJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13305QJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13315PT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13322RS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13326SW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13335AQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13336ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13343UZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13345HJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13346MU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13351FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13363OF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13366MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13366PY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13370OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13382WY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13386XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13397YQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13412NN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13419IE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13429VD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13431QI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13433DK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13439WS", "type": "N-linked", "subtype": "Complex" }, { 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G13515ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13517FA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13521NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13527SO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13528WO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13535FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13537KO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13541NC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13542HW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13545DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13577LP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13580OP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13583BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13585JF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13591VJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13592PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13592VY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13594XM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13614FV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13626CZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13628SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13631VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13634RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13646GG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13657KC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13659RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13661TG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13661YX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13662EH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13663YA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13667MS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13668KY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13671HC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13672YG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13680AH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13687TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13688QP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13696DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13698FQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13712AW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13719MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13720TX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13725EV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13730NF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13744OG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13745OH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13746SQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13751NN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13753JW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13754CL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13757MF", 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"subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19289JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19292KY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19293KL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19294RF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19304XI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19310VN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19315TM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19317GV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19335OM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19353CF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19353SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19354PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19370RO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19376VI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19378QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19378ZS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19384OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19397EJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19421FY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19429IT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19430NR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19430QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19444JC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19444YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19447ZX", "type": "N-linked", 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19537YP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19541IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19549OP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19553VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19559QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19561MR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19565UD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19568JE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19572NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19588HA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19588WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19592AH", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G19600YQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19607EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19610CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19615BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19616IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19626TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19636RY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19648XQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19659TZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19668AC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G19668FQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19677BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19677EK", "type": "N-linked", 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mannose" }, { "glytoucan_ac": "G20257ID", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20266PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20268UK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20274PP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20284VH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20286TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20295SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20296ED", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20297OI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20299PF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20305DX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20326YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20328WJ", "type": 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"G20663AI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20692KB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20692QU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20694YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20697MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20711NK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20720CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20724DU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20737NH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20744OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20751GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20758LC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20767LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20768QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20779SK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20794PH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20815TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20830HU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20841PR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20847FN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20871ZT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20873FQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20877ZV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20881QF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20883FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20883QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20885BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20894MY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20895FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20909AP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20912QY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20919FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20924UR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20925KM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20926BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20946SK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20953SW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20956ZK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20966IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20966TZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G20982KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20983SP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20986XJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20991HR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20993NS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21001NA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G21005TQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21007OV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21009VI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21010JT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21010YO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21013JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21021HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21030SX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21045ZH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21050RT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21072IJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21078FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21098ZU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21100JS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21109OS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21112KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21118MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21140CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21159AT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21167SG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21167TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21168QR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21168XK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21170XT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21171GS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21179ZG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21195ZJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21196UL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G21203TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21211KU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21218WO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21219OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21236IX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21241VN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21246OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21251LN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21255ER", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21256CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21257CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21266OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21270CB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21278XO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21280KW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21284IS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21305WL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21311PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21311YA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21319HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21327MO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21327TO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21342EB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21343HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21346ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21359LU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21359NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21361AZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21364PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21380FF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21381SS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21391VZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21393DK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21411AR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21411GO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21415RL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21420QH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21421NG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21432UE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21437MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21438LK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21445UU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21451CA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21454AE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21456NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21457YV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21459ST", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21470TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21473QQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21495CG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21498SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21508HF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21513QX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21514JX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21519PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21549HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21550DG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21586RO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21609FV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21627CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21642VS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21663DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21667GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21676JO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21678VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21679ID", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21695CC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21727SR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21729HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21730NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21731DB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21733CM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21733DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21733SO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21737WY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21746MX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21751SS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21754WR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21755KD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21756MV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21760UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21767ND", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21786MN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G21788RU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21793RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21823MR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21825UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21828OD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21838QU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21847RB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21850BQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21858EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21867ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21881PU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21897ZX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21898KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21901DC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21901SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21902RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21916IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21925JZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21927IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21928XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21929YV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21933CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21933XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21934ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21946EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21956VB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21967UB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21969LH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21969UD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21969ZB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21974TQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21982KM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G21986MJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22000SZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22009DO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22011DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22014NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22015SR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22018CH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22018VM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22021IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22022NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22032KD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22043HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22043KP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22048BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22078MT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22083UZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22088WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22098NU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22104XU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22107KA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22117HL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22117NA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22118PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22120QI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22122FL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22123FD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22137KZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22137OG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22140GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22146HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22146SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22152RD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22159OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22161YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22163FP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22170TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22188XM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22204JI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22208HN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22211WF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22222NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22230QR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22230UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22237ZE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22246QW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22252FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22252XB", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G22260JR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22264FR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22265BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22267WV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22283TV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22289RW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22305FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22306HH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22313SX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22330AF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22340YC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22351RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22354SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22361XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22367YH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22375QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22387ST", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G22388FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22406UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22426TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22427ZK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22430RE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22432GF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22437MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22442GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22444UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22447QF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22457TG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22467XI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22469AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22477EB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22480CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22483YL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22486LT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22487SD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22487WN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22491NS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22493AJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22508JZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22511DQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22511JU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22511QL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22519VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22533WA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22538PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22550VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22558JP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22562AT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22562DG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22576RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22587DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22599MH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22607MW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22638DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22644UB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22650VK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22658BN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22674CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22678XU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22686TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22687XW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22699CC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22714CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22721QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22728HO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22731HP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22732WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22735CK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22747ZM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22754FQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22766AZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22768VO", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G22787UZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22793CW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22795QB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22814HE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22826KU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22836DF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22855EV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22859OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22864HF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22864KB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22865RK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22868PF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22887CB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22887EQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22889SE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22893QE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22898PA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22906YL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22912TT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22914HB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22918BO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22920IO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22925JC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22927MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22928ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22938IP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22945AJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22946YB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G22949KX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22972ZW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22979QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22981GY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23002WE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23008ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23013VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23022KK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23023HU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23024PQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23025EY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23026QZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23036BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23060KN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23072OZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23087XI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23099XP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23109YO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23113NH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23117SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23132GK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23134DZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23134YS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23134ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23142ED", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23142YD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23151BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23151RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23152VH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23155RN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23162TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23166NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23175TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23176IZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23182LG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23210FC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23212LP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23212XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23228DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23237YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23239HX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23259KO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23280RB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23288OZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23290TL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23295TF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23296IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23305TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23307DT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23315EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23322BE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23330SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23340ZN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23341TG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23342BO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23343YD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23345GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23362IZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23377WN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23378YH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23394RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23399NX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23402XL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23406JV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23408TM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23416CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23416VJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23419AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23436FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23437PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23451HI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23456BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23458QH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23484GM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23488DX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23495QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23503KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23504NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23511JD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23512SE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23520SQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23532PU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23546HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23546LY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23552ZM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23561IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23562WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23572BH", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G23577TY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23581SB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23583KG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23593WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23598DU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23601EL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23614TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23616ZX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23626NI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23634MW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23637PX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23643IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23647WB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23661JI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23667EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23667XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23672PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23689AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23689IH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23695IQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23702EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23706HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23711JB", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G23713VB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23718VU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23722TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23726CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23765TI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23768VY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23770JR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23773CP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23773ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23782KP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23795SX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23796IQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23799GS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23805AC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23811AK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23811OL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23817OE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23819TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23824AT", "type": "N-linked", "subtype": "Complex" 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"subtype": "Triantennary" }, { "glytoucan_ac": "G23934WD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23936EH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23938MO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23945SD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23946TS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23949TZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G23963ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23980PE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24000JV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24005JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24028ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24032TC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24036VH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24046UO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24051KM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24054WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24068UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24070RM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24078MY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24083XE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24084TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24092TN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24095BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24103KC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24107UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24121ID", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24122ZI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24124EW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24125FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24131KD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24132CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24138CW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24154DX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24155DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24156YC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24163SS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24176CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24191XX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24195NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24202BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24203FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24203XI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24226KZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24229GD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24241WW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24251YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24275AM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24284HU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24284KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24292VT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24297EH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24303GI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24304KO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24305IZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24318KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24324UG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24325KO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24327OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24329OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24336IA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24338MH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24345FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24346JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24350QN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24354CO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24355OK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24356AE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24362DZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24364HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24366XJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24371AE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24371XA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24374BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24374US", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24379VQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24382RE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24402OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24402VA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24413UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24414QM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24416SU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24420RT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24422GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24432GW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24439WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24440EI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24445DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24465EF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24493OT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24495VV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24498DI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24501HF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24517QL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24523DO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24523FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24527YF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24528UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24529GI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24531RS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24541XL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24546DC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24552KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24561WN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24573UJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24585EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24585JV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24593DX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24596WC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24599MW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24604HV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24616QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24620AI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24622ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24634RZ", "type": "N-linked", "subtype": "Triantennary" }, { 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"glytoucan_ac": "G24700EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24701AI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24705DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24720WH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24739VM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24744SN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24748QU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24752UA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24754HF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24758NZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24763HX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24766QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24767EG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24767MV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24769QK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24782UB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24788IJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24791UN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24797UH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24798VC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24811FP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24812WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24816DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24823MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24844YX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24849NM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24857RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24867FR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24870CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24872OE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24875YE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24888ZY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24891EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24897QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24913UR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24914SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24915WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24920KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24921TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24926AJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24930XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24936MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24948VM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24954RW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24968XB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24970UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24977IR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24984RR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24987DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24990UB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24994OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25019NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25023DC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25027GY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25058ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25062CC", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G25067BP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25067TK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25068HM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25069TE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25094QT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25095HH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25096GQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25097RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25104PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25129DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25132GJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25139BM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25140TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25162JS", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G25164FO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G25164XM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25168RI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25173WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25180HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25200CR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25224QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25228LR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25232SJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25250JQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25251YZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25264CN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25279YI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25280VW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25290DT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25297CU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25310TE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25317UI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25322UQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25325YE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25326BM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25328BM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25328SG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25350TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25363AJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25381UC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25381ZT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25386IJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25391SS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25392ZR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25394BK", "type": "N-linked", "subtype": "Arm-fucosylated" }, { 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"type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G25917KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25926OL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25939RB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25942LR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25961NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G25965IE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25967ER", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25984CA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25986DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26014HJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26014MK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26016BX", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"Tetraantennary" }, { "glytoucan_ac": "G26080SE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26081RR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26106YB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26109NE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26121NN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26122PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26123CC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26133ZJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26134IV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26137IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26142HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26143BN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26144DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26145BA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26145IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26150FI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26153IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26160AS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26164VG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26169CH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26179TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26182BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26187KC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26189BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26206DX", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26383OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26391HA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26394UA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26397JS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26399DO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G26403JU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26405FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26407DP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26413UF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26421QW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G26441EY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26458UO", "type": "N-linked", "subtype": "Other" }, { 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"N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27119UQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27121CS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27122CE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27123NH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27129QG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27129QJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27129RF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27148YF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27149SR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27165KO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G27169KC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27170BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27170NH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27171ZS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G27178VH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27188NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27196XM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27217JW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27223CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27225SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27227MW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27238XC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27241WX", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G27249YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27251WT", "type": "N-linked", "subtype": "Bisected" 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"subtype": "High mannose" }, { "glytoucan_ac": "G27304YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27310MQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G27314YB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27316ME", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27323FR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27333CA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G27333LZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27355OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27357MT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27383CK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27383GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27385LP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": 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"Triantennary" }, { "glytoucan_ac": "G27476HK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27485TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27488AQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G27495UM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G27501HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27509ZF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27516AE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27517DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27534XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27546OZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27548YH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27561QX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": 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"G27753MI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G27759QN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27763JP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27776PG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27783DL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27783SY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27800US", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G27802LV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27802PW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27807ZB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27814XA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27817LK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G27826HM", "type": "N-linked", "subtype": "Complex" }, { 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"subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31416KB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31421EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31426KU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31429YW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31438WA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31456BO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31460VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31461CK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31494OZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31495XA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31504TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31515BE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31520YP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31531YC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31532GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31540AF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31555KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31555TF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31559RO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31561GU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31565BP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31576LD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31577VK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31579YP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31587OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31601BZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31603EH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31604HF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31606TH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31616YD", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G31618AH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31627MW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31630IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31632NL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31632OD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31632QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31637BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31638QT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31639EU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31639NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31652KL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31661TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31662BR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31668AP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31670BC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31674DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31679YU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31680LJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31685QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31692TJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31700GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31701OO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31703TV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31717ZU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31720WP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31721AZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31735XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31739SV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31744OB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31747RS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31767LY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31773DR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31773TP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31774SW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31787HV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31800YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31803IG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31810OU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31814JO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31822CM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31824MM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31828QS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31833FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31834GI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31835YP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31838XA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31847TK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31851ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31859DB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31865AG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G31873MP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31878HV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31894KJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31898CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31904ND", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31906VF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31922FD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31943KG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31972CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31976RQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31979RM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31984FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31991IV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31993QW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G32065BG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32065KX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32079YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32080QS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32081QI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32082KI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32088SL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32104JU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32107HF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32111TP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32114CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32116UD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32144XK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32146GG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32146HD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32149KV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32156DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32156ZV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32169DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32173NW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32178ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32179HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32190EA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32201IL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32205BY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32205YW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32211XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32212NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32216CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32216KM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32216QH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32233RG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32241HI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32243ET", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32246SI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32247GO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32250LZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G32250QD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G32266OH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32272QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32283ZK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32287FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32287KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32291JX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32303MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32305RZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32318NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32324QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32332OM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32340YV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32342EK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32358YV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32364DF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32364PV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32365IM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32371XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32375YW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32377GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32378BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32386AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32387AH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32395UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32418LI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32429AH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32429DG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32442UP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32447FC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32452EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32455PS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32461GF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32473MI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32483HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32484KU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32485PU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32489DL", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G32490LW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32505QR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32510IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32514NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32518YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32522KP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32525MO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32525PS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32532CU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32540IF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32551IQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32556DM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32559WU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32573BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32592IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32611KT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32615ZF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G32617FY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32624RQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32629RB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32646BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32654XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32659RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32660GU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32671AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32684AI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32692TS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32699RJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G32704TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32705EO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32711TF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32727OR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32744YO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32746QI", 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{ "glytoucan_ac": "G34291TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34293AU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34306IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34314SG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34317IP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34325IS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34330HT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34343FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34381JF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34383AG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G34392KZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G34392XW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34394BR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34394KR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G34399UW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34413RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34424TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34430BH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34430II", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34435HX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34442SS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34449FW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34457IL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34462PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34474PH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34477EW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34479YF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34483UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34495UB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34499SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34508UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34513HE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34527RW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G34529TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34549PC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34561BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34569IX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34572TY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34582DB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34585DT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34595KJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34597QJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34603JX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34611ON", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34612DX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34621DB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34626UE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34631OW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34636RW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34650EM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34669ZJ", "type": 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"G35524PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35527UZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35537RJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35560JL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35565NM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35577EK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35577IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35585FC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35588AR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35594BH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35599MZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35599NO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35607LG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35610QW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35619UY", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G35621GU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35623XW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35626TC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35632UU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35636SW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35642GA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35645TY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35655SC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35662PP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35666SX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35674SO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35675LO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35679TE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35687VS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35692YN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35698AZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35698OP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35708JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35710KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35716TV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35722YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35724PH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35732LD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35734AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35734MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35740ZG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35747ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35748HH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35754WD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35755FR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35769UV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35774GX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35777BH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35777GW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35787ED", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35791OW", "type": "N-linked", "subtype": "Triantennary" 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G36618KF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36626AJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36639KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36644JQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36651MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36656LV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36686IS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36699DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36699PG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G36699YI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36701GV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36707KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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{ "glytoucan_ac": "G38235ZC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38236XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38241TC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38249IZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38252LS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38266ZQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38267IW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38271CW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38277AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38278VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38291RB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38296AM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38297TU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38322BG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38322EG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38329HC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38349VC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38362AS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38371WW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38373BD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38395YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38404PP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38406HA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38407OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38407UP", "type": "N-linked", "subtype": "High mannose" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G38655UZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38658JL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38659HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38663XJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38664NX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38667YB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38667ZB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38668OJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38674DP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38681ZT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38682DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38702RY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38714CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38728JS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38738YC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38746TV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38748VM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38749GN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38753OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38756OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38759NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38773BX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38788GC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38800CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38810ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38817ZQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38824JE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38835AV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38843SX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38849GM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38867AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38883QO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38883ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38887NC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38895FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38901GU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38901WO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38901YC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38908KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38909RH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38919CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38919QI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38922KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38930WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38936AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38946SH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38948TJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38951VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38955TH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38956YE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38958GL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38960EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G38966ID", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38973QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38977DN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38978PR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G38979QD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38985IW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38997JB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39018CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39020WZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39027MU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39029JR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": 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{ "glytoucan_ac": "G39308XN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39318DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39318IJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39323NG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39338NX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39340CD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39342SG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39344CL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39355VF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39361OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39370XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39374GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39375NU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39377DE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39377JQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39379ZG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39383KR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39397SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39401OQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39407WQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39408YK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39414NM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39419SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39421JD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39431MA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39437XQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39439UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39444QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39452ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39461VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39465KG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39472EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39473HX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39478RR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39482HK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39482QN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39487ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39492DS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39504IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39509DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39515DI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39531LA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39534CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39538CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39540XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39541IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39546BN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39549VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39556AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39556JJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39557EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39565DV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39566TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39567LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39567MF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39570CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39578OU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39591HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39595CR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39597XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39600NF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39601JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39602UU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39617JJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39620BN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39623FZ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G39631PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39633IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39645AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39661KT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39662GV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39687OP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39687WG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39691JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39697OF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39716GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39722LF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39735TI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39750GC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39756ZC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39757QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39758CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39758MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39760IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39761CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39761RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39764AC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39765RY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39778RQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39783GG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39794DN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39797QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39799BM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39800KX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39809FW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39809LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39810GC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39812HV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39813YP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39824OQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39829HV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39841VH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39846LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39856ST", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39868EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39873VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39879TX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39887ME", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39893KL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39906AT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39908TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39917RN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39943KJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39944FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39945EK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39952PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39957VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39970RY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39976KS", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G39977UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39984XX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39992DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39993XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40000FH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40012WS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40013GE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40024EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40027VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40033BQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40033UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40044DP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40044ME", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40045PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40064GR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40065EM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40069AV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40074SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40079RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40086WC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40095NL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40096SL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40097PQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40111WL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40124HY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40125HA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40127OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40128VT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40136EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40138ED", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40173NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40173RG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40173TB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40181EN", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40182HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40183VY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40189YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40194MN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40198OD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40200RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40212MM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40219EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40221OX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40236GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40239DI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40244KN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40245CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40252XD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40264HA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40264QS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40268BC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40271HI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40289AW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40289RO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40298CT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40309II", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40317YZ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40330AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40341NV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40343KH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40346WK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40352EF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40353FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40358EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40360LO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40365PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40368GK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40373LS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40384AJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40394IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40396FX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40411HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40428GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40429SD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40442UK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40447LJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40452FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40452ID", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40461OS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40463TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40467RH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40472QE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40475CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40480ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40482NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40490KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40495ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40504AF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40513EI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40514ET", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40533LI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40537VT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40540DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40542QP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40554DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40558VT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40564KP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40566IJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40569DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40573OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40576JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40578SN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40579HH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40579SX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40608DF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40641DI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40642FF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40647HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40650WW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40658KJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40662VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40668YU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40670DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40690AW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40702WU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40704WK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40707SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40728DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40732RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40734VV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40735XY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40740PL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40744ZM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40783XQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40785MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40786FB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40791GU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40796DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40806JH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40806RJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40813TL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40820FX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40821RK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40825YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40840UK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40849ON", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40865GN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40871MS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40896GF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40900UQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40903ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40905WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40906DZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40909AN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40910SH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40915GX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40922OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40926RU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40944WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40963VD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40966IE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40967JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40969DD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40970QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40986VK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40991AO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40994FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40998BL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40998MZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41002DX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41007JQ", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G41012KL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41014HY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41015SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41030WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41036NU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41045PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41046RP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41063JS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41068PD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41072QC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41075QA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41081WD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41085KZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41087ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41088MH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41092IE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41095QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41107EH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41112KF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41116IJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41120BJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41125AS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41129KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41149OA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41163WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41171HL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41178NB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41182NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41191PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41209QO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41219SY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41223DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41224TP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41243JF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41274AJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41276XE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41278YY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41291OR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41304FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41304KE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41309OX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41310VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41315PN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41323XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41326IG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41331JX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41343RT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41347IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41348RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41352UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41352ZD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41359DB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41366ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41387DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41389FB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41389HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41400BX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41403MI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41405AU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41405QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41408ND", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41421SQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41437NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41445YZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41449ZD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41455NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41458MM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41458VW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41477DH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41485IM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41485LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41489AY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41504VL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41510DX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41511CE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41522EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41523QO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41525YO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41528SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41535JH", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G41536ZF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41540QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41543HE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41543KR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41543ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41555NS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41563EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41566AJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41575GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41576FY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41596PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41605VJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41611UG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41611UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41655EF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41656NL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41658RK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41659QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41670EF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41686EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41690KS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41706FJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41708PN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41711ZZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41715PL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41720HN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41726FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41731DX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41742IZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41754BT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41755EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41771ES", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41774ZC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41785JN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41787AW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41797KK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41797PU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41800OU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41811PH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41811VQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41817BL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41820ZZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41821MR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41823PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41823TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41824PC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41839SS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41839YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41847IM", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G41850AE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41850LO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41850YN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41854MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41857GD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41859XD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41864LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41865ZJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41878UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41879EJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41912CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41915GN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41923EO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41929NX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41934AP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41937ED", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G41940MB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41940YX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41943OZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41953RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41957CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41963XP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41974MG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41981MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41989TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41998UT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42011CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42011NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42013HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42020RU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42022OY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42023VI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42024LG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42026VC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42028DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42028VS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42032ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42039DE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42042EG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42044GU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42058RF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42060JY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42061BV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42077MY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42081JA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42082FE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42095CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42096BU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42097JO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42100WR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42110JE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42118KX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42123IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42133QN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42133YG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42139GR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42155ZX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42173FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42190AJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42193NQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42200QF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42205PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42212IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42222AJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42228JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42240DE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42262TV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42264OV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42270OU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42292MP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42295MA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42299NR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42305NI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42306MH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42316LP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42324WH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42332HD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42332YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42358JQ", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G42358LZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42362AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42365AT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42365XA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42372YG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42380GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42394CB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42397NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42398FX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42400JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42402VC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42413IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42415XD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42420AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42420NN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42438ZG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42439GB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42440OJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42441DJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42460RM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42461JY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42475PM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42477ZH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42482KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42493LZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42495TI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42501PR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42501VF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42504VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42512YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42516QP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42525DE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42526XU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42528HF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42530JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42548XF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42552PM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42553UZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42556HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42565GH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42600SB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42605KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42612YU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42614NV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42619IV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42629JY", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G42635DR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42640LE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42648OU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42653GO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42671TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42672MA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42673EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42674AX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42674LI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42674MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42679AH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42680EX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42681RK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42686NP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42686NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42702VU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42712XS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42713FO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42713IF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42713ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42714PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42718VL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42720OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42725VI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42731RJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42735RP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42746CP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42760UJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G42769EU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42772CJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42779AL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42779TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42793SW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42797TX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42801YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42823LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42823ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42824AQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42825JV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42826YI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42830YF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42832NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42841BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42846BO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42855XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42862VU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42866WF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42874VX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42906YD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42909GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42924MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42929LX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42941KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42962KI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42970AZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42975HG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42984GS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42984ZU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42989XH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42996MA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42998PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43000DM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43014FZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G43026UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43040IL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43048HN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43057CV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43066JS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43070PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43073RP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43075NB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43075VF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43088GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43088UA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43091XE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43095XB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43122BL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43131ZX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43136RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43137UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43139BN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43150ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43157GC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43157UW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43159MH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43164CL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43171MX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43173AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43216EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43217GA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43230HK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43230KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43242DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43255OW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43263OG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43265RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43270HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43279WN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43280XO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43290KL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43290WV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43299SD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43301PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43301TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43320NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43325ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43327EY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43330ED", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43330ZT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43339ZY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43343WJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43346IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43346PX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43346UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43350KZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43351VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43366RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43367QW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43374FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43402RG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43419SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43428WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43433FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43447HY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43452LH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43454VB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43460JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43473VD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43475FH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43499QE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43502GT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43505GC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43507KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43519BI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43521PH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43523KB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43526DL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43526DV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G43538QE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43547MI", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G43549OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43553YK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43556OK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43558RC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43560SB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43563XU", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G43591CU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43596KL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43602WF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43603TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43610AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43616YA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43636RG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43638GS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43645EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43645SI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43648DB", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G43649OO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43654PQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43657WC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43660IT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43664YB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G43665PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43677TG", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G43680SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43685DC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43694RQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43702IX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43708QI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43722HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43749GH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43753QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43755KQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43761IQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43761WH", "type": "N-linked", "subtype": "Complex" }, { 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"Tetraantennary" }, { "glytoucan_ac": "G43848AQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43852AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43861TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G43869EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43873AE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43873BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43873MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43876NZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43885HK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43899VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43901MM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43923FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43927CA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43939PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43947VZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43953LS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43963UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43970XC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43981RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43984TE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43985JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43989OI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43990ZC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43991QD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43997BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44005DK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44021SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44027TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44030BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44031UD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44043ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44046WQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44054LD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44066XU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44067HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44070VR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44073EJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44076LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44084PP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44085QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44089VB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44092XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44121LY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44122BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44132BD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44137YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44151FI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44152CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44156OE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44160QJ", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"subtype": "Hybrid" }, { "glytoucan_ac": "G44218WP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44237IH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44246AC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G44264DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44268RP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44274UK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44276EF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G44304NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44306ED", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G44306WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44324HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44325XR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": 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"Tetraantennary" }, { "glytoucan_ac": "G44371LQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44383XX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44413JJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44414DH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44424DD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44444MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44448IF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44451GP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44452MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44466VN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44476TD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44480YA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": 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"Core-fucosylated" }, { "glytoucan_ac": "G44553DW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44568DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44569PZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44572NU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G44575QZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44575RK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44576HQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44576MS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44583JH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44598QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44603YI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44616ME", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44617UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44618FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44623TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44634YI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44639PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44647TG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44656CN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44659VQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44660JB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44660UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44678XW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44688UB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44697UD", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47226ZN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47238FR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47242QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47251EO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47252EW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47253EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47253OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47253VG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47257MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47260LO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47273WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47274MT", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48551GG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48598GF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48602PL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48614JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48616UI", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G48626HI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48628EN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G48628NP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48630BP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48648VZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48649JF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48654YJ", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49961MS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49961XO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49963FN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49980RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49984EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49991UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49993RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49994RB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50008SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50008TR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50013XL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50018IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50018IL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50023BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50032MO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50036VV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50058RB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50064HP", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G50068PO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50071YW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G50076JD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50078RT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50103BI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50106JX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50112PT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50112QY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50119EM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50131RA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50135PA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50139IU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50150UT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50161AA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50165QT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50171PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50179MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50189HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50189JY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50192NG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50205RT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50210FA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50211SY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50216QG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50222RE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50234BV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50236HX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50240CR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50258QB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50261RU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50272UH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50273OO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50293EM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50315FC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50325PK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50327BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50327WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50329HB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50337FA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50337ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50338LJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50343XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50349SK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50353FU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50353PP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50359HZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50364FV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50365JU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50369EI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50375VB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50383SB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50387BD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50387OH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50392AV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50392ZV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50398UZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50399JL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50427EN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50432VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50441CK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50444IY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50448ZV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50449AD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50451XH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50458XA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50462VS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50474FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50474SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50484BP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50487BS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50489VC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50502BT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50507PS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50508SG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50517NM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50518XT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50525GP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50531NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50535IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50543NR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50548PW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50549VU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50553IT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50553TX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50554LM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50567GM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50573QG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50579NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50584UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50609NM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50626AY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50629FM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50636SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50638US", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50639MB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50644WX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50645MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50658WG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50659JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50660UT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50664WQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50680HC", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G50690RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50697EP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50706US", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50707YR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50709EY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50728CA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50730KL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50731QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50735MY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50739NP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50753GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50775RM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50779LX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50782HI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50782LR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50783JY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50783YN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50785UU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50791ES", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50798YC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50817TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50821RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50825VR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50826PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50829CY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50837EH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50839HB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50842FY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50842MS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50845UM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50869YE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50871KO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50880EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50888WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50893BA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G50896TP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50898VZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50901FO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G50903RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50915WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50916FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50932PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50933UG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50943ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50959AX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50964YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50968FP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50976TT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50997KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51004EY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51007QO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51013PJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51014ET", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51018GI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51022NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51023KG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51024RU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51024ZU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51041MW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51045EJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51050LD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51057KO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51064SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51065AQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51066TO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51074KT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51086FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51093RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51098AA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51107TC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51114UP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51117HW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51119RL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51122PB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51168MK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51170KR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51175PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51177EP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51188ML", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51212OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51229TU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51229VG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51243XN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51244YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51265ES", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51266ML", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51274LI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51278BZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51299JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51299WN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51302HQ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G51324UL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51333KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51347IO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51353BD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51358LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51358WW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51367TM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51369CD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51370GD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51371SK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51378TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51384DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51402XK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51402YN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51411MW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51414AT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51419BH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51429SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51444LH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51448NK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51452KY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51461ZF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51471ON", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51472TJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51490BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51496DK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51497BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51508GQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51519NL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51527NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51530ER", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51537NW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51539FX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51562OR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51579YE", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G51586BA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51590AN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51601CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51601UI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51602JA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51613CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51623PN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51624KI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51630AR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51654CU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51657FI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51670CS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51677OC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51683DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51688VK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51699IR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51699JN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51699UE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51705EB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51714ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51739IA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51743KG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51758ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51766BE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51766BM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51766KQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51768ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51771NH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51777FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51778XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51789EV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51793MY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51799AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51806IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51823DN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51850PT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51872EK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51877JL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51878LH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51880YN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51885AW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51891DI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51896IF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51908QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51916PY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51921XC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51923CR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51929IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51930XP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51941GC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51941IR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51942GM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51947SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51949TL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51955KU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51956RJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51971TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51977RC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51987NK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51994GS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52003QG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52004GX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52021KR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52034SY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52038JM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52052SO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52056FF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52064IJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52070UO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52080EW", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G52080WL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52092BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52104IE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52104WT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52108KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52112MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52115YC", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G52118BC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52121AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52122ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52126RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52136DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52150TA", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G52153CS", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G52166GV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52187WF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52196ZK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52207DQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52210EC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52210JX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52216BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52224MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52225DV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52231BF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52233HF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52233KF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52238TO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52242HT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52243SU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52266YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52268EM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52286UI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52303GC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52308CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52308VC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52315WT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52328DX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52333AW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G52333TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52336LJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52345FK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52351WJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52354QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52358FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52360PJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52361ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52362GH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52367IH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52367SW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52383QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52393JB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52428MJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52441NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52460GS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52461YB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52477OC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52483OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52497YI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52501SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52518HE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52522DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52524GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52526MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52528BB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52544PQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52567OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52576WH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52593LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52595TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52596KQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52603AI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52605PN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52621OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52622SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52622YD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52627IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52632FK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52633YA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52637RD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52645LW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52649HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52649ZM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52663AD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52667KU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52671WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52674YL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52676LZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52677OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52692IB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52701UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52709PE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52724WY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52737IA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52738GQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52770HR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52773YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52776UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52781ZE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52782YT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52790YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52793JJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52794WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52801WH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52802XR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52803GQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52811KI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52823TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52832CE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52849RL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52866KC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52880ZF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52880ZN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52882GL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52886CK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52886RR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52892AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52892OT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52894LG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52916IV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G52928OQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G52932JK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52934AK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52935OC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52956BX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52961JQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52962ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52965YW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52971DE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G52993PA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52993TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53000RQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53004AU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53010IM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53028BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53031JB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53038IF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53046TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53050ZJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53054ED", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53093MO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53096UD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53098FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53099KV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53108IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53117BJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53118DD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53136EC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53149XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53151DR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53152AK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53156MG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53168IY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53170RJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53173PI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53178HH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53190JD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53203UH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53214SL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53219PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53227QM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53230JC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53234IR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53235OX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53241XQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53259FL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53267EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53272SL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53276NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53280MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53288JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53321KU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53322JT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53342MA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53342VT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53347XD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53361RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53362HD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53366RQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53372OG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53375JJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53386CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53396PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53401FX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53417AA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53428EC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53428UB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53447VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53450AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53452PP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53454TA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53460CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53466CV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53466SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53471VF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53476DF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53477PE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53479GY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53480VH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53485VW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53487ZB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53492UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53504BR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53520XD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53521RZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53527OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53539XB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53554AL", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G53562KP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53562VK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53565EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53567BY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53568AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53572UK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53574BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53582JE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53604QR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53605PF", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G53617YM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53657SK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53665DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53667CH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53672HJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53675DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53676AB", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G53682XE", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G53683RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53692JL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53709ZS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53718RP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53719HM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53723XK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53725UB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53728DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53733BK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53738ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53743EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53752QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53752TA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53754TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53759GR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53765TP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53767IX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53768QW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53786US", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53795OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53800FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53800IE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53800MQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53802DN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53808AO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53809CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53812BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53817FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53818ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53840IC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53854XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53857IH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53858MF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53859QY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53870ES", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53889SN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53893QL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53894HD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53899GT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G53908VX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53921KT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53923UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53931MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53933HU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53934HB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53944MR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53950KA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53956RO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53961AS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53962WT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G53965RU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53966GL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53975EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53977IC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53985AY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53989JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53989ZN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53993HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53996MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54000LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54010TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54018RP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54020PT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54042WO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54050RK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54059XR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G54067NO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54067ZR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54073XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54076UX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54082HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54098EJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54133WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54138GN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54139VV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54140NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54140ZN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54149OE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54151YB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54153RH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54158IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54162HE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54170ED", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54170UG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54171AT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54191CU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54195NF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54198RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"glytoucan_ac": "G55479DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55481KF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55483AO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55484MX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55488PJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55491EO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G55496WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55504WE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55505BS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55505PJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55507EY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55508HJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55521GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55528SE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55530MC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55533VB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55600PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55601HX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55609NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55630OZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55634MD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55636DH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55645TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55648EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55653LB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55653UQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55661CO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55667OC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55668HM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55677OQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55701FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55706KC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55710FW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55715VV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55719AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55741HN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55742WA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55743SL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55747LQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55758XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55763ZI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55773UK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55779ES", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55781KV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55782QX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G55783TD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55785MZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55786MG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55803NG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55805LU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55810XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55811AY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55818EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55827GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55828KH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55831IL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G55832RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55839GD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55861FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55864VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55867TY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55868RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55877NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55879PV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55886TV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55890VR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55897OF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55903AL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55914FN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55922CA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55953GF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G55959FD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55963XZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G55967NN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55974RB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G55979JS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55982TK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55992IN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G55992JL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56008CK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56009ZC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56014GC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56017FW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56033SL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56034WQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56038AR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56039JB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56056BS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56062OE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56063TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56063TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56069TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56076DZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56076WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56081ZK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56086VE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56095ZZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56102PZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56134WS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56140UU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56144XM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56146LO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56147VV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56148MT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56151CA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56163DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56165QA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56175ED", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56175MM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56202TA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56204RV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56211YZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56224WF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56227XX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56236YW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56238AO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56246PC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56256XB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56259BH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56265BA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56265FS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56269EA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56271ML", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56271TF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56297BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56301MI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56305UG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56318NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56321MP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56322NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56326BL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56327CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56329KE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56339QG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56340GX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56341HY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56354PO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56363CH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56364PT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56376TA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56381GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56381GU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56400AL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56408DR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56414XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56427QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56443JQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56461GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56469EY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56485SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56491QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56492IM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56492JP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56492TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56494BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56499YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56501FP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56505IP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56512DX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56513YH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56516KW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56517YZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56536TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56546LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56549DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56553LA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56555MU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56558EP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56571DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56577TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56586OT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56587AF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56587UN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56591LC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56615HF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56616DG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56616ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56621NM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56621UX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56634KC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56637AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56637MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56653RI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56655CC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56657CK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56676FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56678WD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56690OG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56691CA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56691UE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56696EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56703XH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56720TK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56721EV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56724VL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56732CH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56732OZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56737NO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56740AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56748EO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56749GV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56750OE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56751DL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56770AH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56784HS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56791SN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56809FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56809XB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56811RE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56811US", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56822OW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56825HR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56827BA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56830SM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56837YQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56840FF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56845UM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56850HF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56851CO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56852BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56856OI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56862WE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56867YK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56869RQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56876DF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56891ZN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56893CG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56894NB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56901SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56903ZB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56923VL", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G56952FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56955UZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56963QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56966HC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56970BU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56972PM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56977BH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56988MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57001BK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57001PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57007KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57015NB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57028QM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57032GX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57036KN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57040DY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57044IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57046ME", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57051OG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57052CH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57065EQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57066LA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57075KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57075OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57081OR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57081YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57083FO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57084IU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57092OJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57097HI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57104RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57112FM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57117TO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57125VL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57141NR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57147TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57149GY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57149TQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57153UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57158CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57166CI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57174DL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57197YA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57201XR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57204IX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57208CK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57220BY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57227VQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57228LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57229FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57239MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57245TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57248BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57250OO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57250WI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57257XQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57262WV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57265QF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57267KB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57277JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57284YH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57292SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57295PS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57300MW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57302WZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57305NS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57316XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57320FY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57327CC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57329WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57337SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57338PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57345HS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57368BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57378FT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57379XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57390CG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57410TH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57411WE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57412IS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57413CY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57413FT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57422AW", "type": "N-linked", "subtype": "Hybrid" }, { 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"N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57522MT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57532HE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57538OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57539MP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57550HS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57551SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57565PX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57565TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57569CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57580SM", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G57586DT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57595UE", "type": "N-linked", "subtype": "Other" }, { 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"N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57741SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57759SY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57762GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57774MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57787IU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57789QC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57814LX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57818FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57824KO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57826CO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57832QR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57835AK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57843KJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57850KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57861RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57863LA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57865EW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57881VN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57887UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57914GV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57923KF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57930PW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57937LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57941UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57943ZV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57951WQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57955DP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57956SV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57960MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57970DP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57970NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G57971XD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57976DO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57989AD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57997IN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57999XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58004KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58016LU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58022PN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58025LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58029XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58039DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58039UH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58039VY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58056LQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58094IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58105JF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58111YY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58117BV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58120SB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58125CJ", "type": 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59594CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59600VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59612GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59616TT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G59619LB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59621EZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59622PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59626FR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59627QB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59636XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59636ZB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59643XN", "type": "N-linked", "subtype": "Complex" }, { 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G59858XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59866SG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59869XG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59875NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59875OA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59877ET", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G59877NF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59881OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59885HK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59897WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59910CM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G59914YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59917BF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G59920IB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59922XB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59930CH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G59942FB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G59946SQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59950EF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59951QC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59968MZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59983FU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59984BF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59989VG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59995GN", "type": "N-linked", "subtype": "Core-fucosylated" 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"type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60227EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60227QI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60230HH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60230OQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60233QP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60255MW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60260IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60264PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60269YM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G60271CD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60274JN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60281CE", "type": "N-linked", "subtype": "Other" }, { 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"N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60381ON", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60383WH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60384FO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60388UD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60390SH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60396VE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60413OP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60415BS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60419KX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60439QY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60452UF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60455RF", "type": "N-linked", "subtype": "Tetraantennary" }, { 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"type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60692DB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G60699BA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60700QY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60704KF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60705KN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60708JN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60721MK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60736DD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60751TM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60760VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60765GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60782IE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60785FE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60802KV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60811PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60814ZB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60826VF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60829NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60837AI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G60838EB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G60853DO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G60855MO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60859QN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60860OP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60866GG", "type": "N-linked", "subtype": "Hybrid" }, { 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"subtype": "Tetraantennary" }, { "glytoucan_ac": "G62341VZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62349ZP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62360SN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G62364JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62387ZO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62389NM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G62400CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62408IZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62411TF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62415QZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62421QL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G62428XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62433DU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62437ME", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62446JD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62447TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62460UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62464EH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62470WX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62477JN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G62479EJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G62480RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62488UG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62489DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62504BU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": 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"type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63396ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63403SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63411NB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G63413QV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63415IC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63420HM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63428PQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63428QC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63429EI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63452VT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63454TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63469RX", "type": "N-linked", "subtype": "Triantennary" }, { 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66675LM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G66676MI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G66681CW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G66683RI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66684PX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66685IX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66689PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66692CW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G66723VB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G66728LX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G66733MH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66741YQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G66751BK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66761KV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G66765ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66768IB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66770EM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66807CI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66808JU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G66825OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66832EY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66835KQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66835PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66846ML", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66847YI", "type": "N-linked", "subtype": 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"type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67728SM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67734FT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67760NX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67761EU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67767BR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67772UT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67776GR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G67783LJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67798SY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67809AL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G67816CZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67850XJ", "type": "N-linked", "subtype": "Triantennary" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G70593DF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70594XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70602JC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70613ZY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70617CF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70620RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70628DE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70634FB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70635AM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70640QN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70642RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70647ZZ", "type": "N-linked", "subtype": "Complex" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G70736PI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70737VI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70743LN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70747LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70751HC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70754FJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70757BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70757IC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70765RP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70800WO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70801XH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70809KI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70812GK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70818WE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70819AR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70826GP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70829NO", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G70830AN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70833JL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70836YV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70838JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70845RI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70848XM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70850WQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70851FQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70856RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70859XP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70868QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70881GL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70896SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70898AL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70899FX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70912NA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70923CR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70927FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70945OS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70947EQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G70948CK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G70952KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70958LU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70978CR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G70979VF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70994WA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71009JV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71012RX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71013KY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71017QR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71042XC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71047AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71060QS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71063DT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71066WE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71071YT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71094TJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71098ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71105IW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71108TK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71108XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71114XE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71118NV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71125UE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71145QW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71146HJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71146MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71153ZE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71156OO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71185WF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71200GP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71207ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71211GN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71212FT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71221VI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71226JJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G71231DR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71237SD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71255YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71265RV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71269BI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71270LV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71272JH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71289YC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71293OQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71295UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71296WI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71298BD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71309WZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71320DE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71323UV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71323VY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71332MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71333AK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71333BH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71341VM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71356JZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71360BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71360TM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71363NX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71367OV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71378VQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71379TA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71380NP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71388EZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71388ZW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71397MM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71400IH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71402WV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71405MT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71407IE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71423CR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71426FU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71431OY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71442FU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71451NN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71457DK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71457WH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71470CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71479BM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71494ZG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71496TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71497KK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71513XV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71527NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71529OW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71530LK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71534SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71537VS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71548WJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71549MK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71549XT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71550UL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71555ZC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71558YE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71562CD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71565MZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71568CD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71571YH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71602GO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71606HZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71608WT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71626LI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71641HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71642SB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71642WP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71652FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71657LE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71658OE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71662HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71665YK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71670JD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71673XZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71679MX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71681UC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71690HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71692BW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71695GS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71704AG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71714EQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71717JL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71743PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71754ZD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71765ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71782CJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71785HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71794ZO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71797UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71812IK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71813UC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71815IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71824VE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71828FH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71835BN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71850TH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71856VM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71857KQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71865NO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71869FP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71872RE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71885XA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71888DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71891NX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71906BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71908GM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71910RH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71914DZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71917KP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71918HH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71919QK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71922QL", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G71923IX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71939KS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71943TB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71944BB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71957GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71957HT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71958HL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G71972AT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G72012LY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72012QU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G72018SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72035XH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G72037LH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G72043OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": 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mannose" }, { "glytoucan_ac": "G72103VZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72107SE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72108NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72108VJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G72112RK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72121YB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72125QI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G72128LZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72131JM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72138YE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72145TT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72156EQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72163CE", "type": 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"Core-fucosylated" }, { "glytoucan_ac": "G75896PD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G75896QL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G75899KQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G75902JL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G75903HY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G75903TQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75927AR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75932ZJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G75937YG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G75962GU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G75963MI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G75972VZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G75972ZC", "type": 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"N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77384FE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77396HT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77408FM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77409YO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77434JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77439WS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77445IQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77447DK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77451VF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77456DJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G77459ND", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77466MH", "type": "N-linked", "subtype": "Complex" }, { 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"N-linked", "subtype": "Other" }, { "glytoucan_ac": "G77572QA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77576VI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77589SS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G77608VQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77621PZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77624IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77627UV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G77638EE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77639OD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77643ZX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G77646FX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77657MH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77670FL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77679NJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G77680AI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77685RD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77687SU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77696JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G77699NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77700FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77706QV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77712UR", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G77716YZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77725ZE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77748PL", "type": "N-linked", "subtype": 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"N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77859TT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G77861QN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77874VN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77880KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77887RB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77889NO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G77895XM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G77901JG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77903BI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77915NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77922WZ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G77938CA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": 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"subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80107XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80115FI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80123ZU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80124PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80138RC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80147LG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80155BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80163ME", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80165VH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80177VT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80180FJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80180SI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80182CJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80192HY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80200DN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80200FC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80201UB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80202YF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80210OS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80211PE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80213NQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80218BM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80223WC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80228NL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80264ZA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80268ZC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80276UF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80277LF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80285YU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80291NS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80294GH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80295DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80298HR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80302UK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80304CQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80306BI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80319WU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80327KS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80343LW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80344NL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80352NL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80355WT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80357ON", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80357RX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80366RR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80368BJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80368SD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80372EC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80391ZU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80393PG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80398VF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80403HA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80415EJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80439QE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80443OV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80444YZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80461TB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80469RF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80474MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80476UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80487YW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80499JV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80508SL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80510YA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80513FH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80514ZZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80537QW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80552MJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80553DQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80563TH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80566CZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80567MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80570FW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80578OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80583OL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80583UZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80583XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80591OS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80610BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80612BO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80615YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80630NF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80633OU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80637VS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80647PR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80650PW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80652ZF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80654ZK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80658SC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80661IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80661YI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80664ZC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80673NC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80674SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80677GP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80678MA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80685EK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80690HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80711CX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80713VB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80715XM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80717KS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80728XN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80729WA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80733LA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80735WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80748AR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80751HR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80756MK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80759CD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80762EP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80764EX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80767XX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80799RX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80804PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80822MI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80825SQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80843UM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80848DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80858MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80860VS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80861DM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80879CT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80920TO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80941UI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80943NY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80945SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80952QT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80962OX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80965ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80966KZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80976MC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81059IE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81059ME", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81060HV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81070NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81085EP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81096RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81101GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81103GZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81107PN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81114MS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81121OC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81128IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81150TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81153QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81157IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81174YQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81180VS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81185MJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81201TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81213MH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81230EA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81236JR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81247WU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81247ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81250HV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81253FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81266TW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81269JJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81282CC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81284BY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81294AE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81294QU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81294ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81295TF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81309GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81324MV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81326IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81328FA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81331ZW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81332EX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81333SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81335DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81338NH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81342EO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81347KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81348LS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81349OI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81353SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81356NS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81356WP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81358TE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81367CM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81378WC", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G81380NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81384WY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81389EF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81392TU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81397LO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81397TP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81410HG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81413UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81422ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81424HL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81430ON", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81436EU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81443QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81450VD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81456UA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81459MV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81473LO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81486AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81486NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81497EL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81499XS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81505ER", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81528UX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81529JB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81533QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81536GE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81547WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81550KQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81554CS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81559KQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81561UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81575FZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81581UV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81591DR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81594BH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81599LG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81601EB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81604KV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81612UJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81617NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81621ZO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81632RP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81649FJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81650EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81654JV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81676AR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81677FM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81699VA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81707CP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81711AO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81711SM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81713YZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81728BG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81734TI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81738MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81753QM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81771HX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81773GO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81773XZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81795JQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81796XK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81804CZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81806PG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81813WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81819VG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81832HJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81852HN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81853KM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81865HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81869MY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81873QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81874XM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81877PA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81880UQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81896KF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81898FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81906GK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81910BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81912AC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81914RV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81915YU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81923ER", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81929UP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81933FO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81939AD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81944OG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81945DA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81954US", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81960EK", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G81980VO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81999RZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82011YF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82019GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82020ZR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82031FD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82033VN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82035KS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82036CW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82048NP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82050MN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82052RE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82057XC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82068QZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82080SP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82081LV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82107QK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82110HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82113OO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82126PQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82127HP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82127SW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82130LG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82136RX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82138AT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82140BL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82159VB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82168GG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82169SQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82188BV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82190TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82195FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82201FU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82201IZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82207VX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82210CH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82216QD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82216WQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82221BU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82227EQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82233UN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82234NO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82251XS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82252QI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82253JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82258GN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82261XI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82265ZR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82273ZM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82312JY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82320NZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82322EX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82333QI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82341NZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82342GJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82348BZ", "type": "N-linked", "subtype": "Paucimannose" }, { "glytoucan_ac": "G82350CE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82356VZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82358WD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82365EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82368PU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82371GR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82371YD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82381FE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82388RB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82390HZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82393PY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82397IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82403CZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82405LP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82409TS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82410AF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82413XV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82417CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82420AC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82420SH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82454TQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82458BB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82459SD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82466NI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82471PE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82487CR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82489VA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82494AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82503FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82504HH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82507IV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82514MH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82525YL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82526LU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82529OA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82531JQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82540VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82549MI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82557QP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82560WA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82572FN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82577CR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82579AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82579CW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82594YX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82597SX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82602XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82605IU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82609RC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82621OQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82622JD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82622SS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82639GQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82640CB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82659LR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82662KL", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G82664ZC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82665EP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82675BX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82680EC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82687NY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82690BA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82699NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82719GT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82724NW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82728DG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82730QA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82753OZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82761BO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82763XK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82772NZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82773SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82779CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82782PE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82793FY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82801WV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82802AE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82805YZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82811EP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82823JF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82829MF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82841UV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82845MH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82847HG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82853YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82861UH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82864KM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82868SO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82871IM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82873YI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82883WS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82886WI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82887CX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82889XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82894XV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82907NZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82917RE", "type": "N-linked", "subtype": "Other" }, { 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"type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89343RJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89345GA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89353OJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89362MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89364NG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89365KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89366NN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89370FG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89375LQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89378FW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89378UY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89395YL", "type": "N-linked", "subtype": "Complex" }, { 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"Triantennary" }, { "glytoucan_ac": "G89498BT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89522MV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89532GI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89532UK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89547PG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89561DW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89584RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89587BP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89602QT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89602RY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89615SV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89615VR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89617FK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89619KY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89620UQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89623PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89624LF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89632SS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89637WE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89641ZV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89654YT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89658RO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89663TB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89664KV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89669IB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89669MO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89685ZW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89701XL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89714WN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89720ZS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89722NR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89722OZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89729ZG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89736EE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89738LW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89738UT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89749WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89756YF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89794YL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89799OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89803GR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89808TP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89814XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89826GE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89835HT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89838LO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89839UI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89841WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89845CN", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G89846HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89857VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89858HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89864BN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89865CB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89868JS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89870WK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89877QI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89878ZY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G89891DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89895CK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89905SH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89908RT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89911NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { 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"N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G89993FE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89999GG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90000WS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90017UO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90023TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90028HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90033AN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90052RE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90065BD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G90081OR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90091ZQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90099GV", "type": "N-linked", "subtype": "Complex" }, { 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"type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90290ME", "type": "N-linked", "subtype": "Arm-fucosylated" }, { "glytoucan_ac": "G90304FZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90305AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90308YV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G90316QJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90334KL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90342RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90348RI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90348SA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90352XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90356TP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90363CW", "type": "N-linked", "subtype": "Bisected" }, { 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"subtype": "Triantennary" }, { "glytoucan_ac": "G90505XK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90508ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90509OX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90509QW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90541XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90542MP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90543DL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90556HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90564EX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90582WZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90584SZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90596ME", "type": "N-linked", "subtype": "Complex" }, { 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"Tetraantennary" }, { "glytoucan_ac": "G90677OQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90681KA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90685OB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90686FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90686TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90688JZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90698PW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90700NG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90703DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90712YJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90717TP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90719DY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90719YN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90721DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90721SF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90725ZC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90737HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90743AT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90745FS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90755RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90764JW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90766ZI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G90768FC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90769IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90779DH", "type": "N-linked", "subtype": "Triantennary" }, { 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"N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90848NU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90850QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90852GT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90853RR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90858SP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90870DG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90873EK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90874TM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90882XB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90884GX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90889KG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90891CR", "type": "N-linked", "subtype": "Complex" }, { 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"subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90974PL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90974RE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90980KD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90983BT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90983OS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90987JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90995MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90996TK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90999CW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91005JW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91020HW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G91020ZU", "type": "N-linked", "subtype": "Triantennary" }, { 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"type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91150PB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91151XY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91155GP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91156HJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91159AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91164NP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91177IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91179XY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91180QG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91193KQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91199QX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91203RO", "type": "N-linked", "subtype": "Triantennary" }, { 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"N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91607IU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G91611ZT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91616GP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91623TN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91624NX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91626PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91644JA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G91650DK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91658LT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91676UJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G91686PO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91700SA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91704AL", 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"Core-fucosylated" }, { "glytoucan_ac": "G99683ND", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99684PD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99689NZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G99691HE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99707FV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99714FV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99729IU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99732NX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99770NO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99777VA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99783ON", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G99796NW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99797PH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99801SM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99801VV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99808VS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99829YW", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G99831DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99844CS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99846PG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99848OC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99853JR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99858XP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99866WK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99873PN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99876AH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G99883ZA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99891PR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99896CG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99897FQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99902FH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99927HL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99935CU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G99943EE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99950SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99952ON", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99954GW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99954ZJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99956MJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99969SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G99980II", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99980WG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G99981ST", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99981ZK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99992LL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99996FL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99997WS", "type": "N-linked", "subtype": "Complex" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIY8-1", "uniprot_ac": "F1RIY8", "uniprot_id": "F1RIY8_PIG", "mass": { "chemical_mass": 93942.0, "monoisotopic_mass": 93942.0 }, "refseq": { "ac": "XP_003481014", "name": "dynein assembly factor 5, axonemal isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481014" }, "gene_names": [ { "name": "DNAAF5", "type": "recommended", "evidence": [ { "id": "F1RIY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ] }, { "name": "DNAAF5", "type": "synonym", "evidence": [ { "id": "XP_003481014", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481014" } ] } ], "protein_names": [ { "name": "Dynein axonemal assembly factor 5", "type": "recommended", "evidence": [ { "id": "F1RIY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIY8/entry#names_and_taxonomy" } ] }, { "name": "HEAT repeat-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1RIY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIY8/entry#names_and_taxonomy" } ] }, { "name": "dynein assembly factor 5, axonemal isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003481014", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481014" } ] } ], "function": [ { "annotation": "Cytoplasmic protein involved in the delivery of the dynein machinery to the motile cilium. It is required for the assembly of the axonemal dynein inner and outer arms, two structures attached to the peripheral outer doublet A microtubule of the axoneme, that play a crucial role in cilium motility.", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8#function" }, { "database": "UniProtKB", "id": "ARBA00055740", "url": "https://www.uniprot.org/uniprotkb/ARBA00055740#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAAF5", "url": "https://www.uniprot.org/uniprotkb/F1RIY8", "locus": { "chromosome": "3", "start_pos": 461817, "end_pos": 417324, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007543", "url": "https://www.ensembl.org/id/ENSSSCG00000007543" } ] } } ], "crossref": [ { "id": "F1RIY8", "url": "https://alphafold.ebi.ac.uk/entry/F1RIY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007543", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007543", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737767", "url": "https://www.ncbi.nlm.nih.gov/gene/100737767", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737767", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737767", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFQGPWA", "url": "https://omabrowser.org/oma/group/AFQGPWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIY8", "url": "https://www.orthodb.org/?gene=F1RIY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16216", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16216", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16216:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16216:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24573", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24573", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25757", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25757", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481014", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481014", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R116", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R116", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R116-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R116-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIY8-1", "url": "https://www.uniprot.org/uniprotkb/F1RIY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALVAAEAAVTRGPAEAAEAAEAAELSRVLSRLLPGLEADNKLGRRRALEALQRELEAARPEAPDADPAAAAAAFQGPWARLLLPRLLRCLTDPAEGCRALAVHLLDLGLRRAARPCDALPRLLPALAARLACPEPARRPPPEPCEELRLALVQLLGLAVRLGGTALAPHLDDAVRVLRSTLLDPFAAVRRESCECAAGLARATPDHFHMQSESLIGPLMQTVSHQHWKVRVAVIEATGAVIQFGSGKSVDDVLPHFAQRLFDDVPQVRRAVTRVVGGWLLDLRDRYSFFHKLIPLLLSGFDDDIPDIAHEATSLWEKVGLQWQTENEEDLKDKLDFASPPPAHHPSPERRPGLGCRELVFRNLAKILPAICHDITDWVAGTRVKSAQLLAVLLLHAEDHATQHLEPILRTLLHACADEEGAVVRSCISCAELIGAFVSPEVFLKLILTTLRKSPSAPGLLVLASVVRGCPREALRPHVKVIATELAQAHICQGPENPVYGERLLLCVQALVAGSREDCREAALPLLEVLVTVLALWGATGLGDKVQETLAALAAAEGVDGSQDLFREHLGPLLEWVAASHRDWTVHSAEVLLLDVVVTHSGPALGEALPQLVPILRSCLQPARDPALRLQLFSTLTRVLLRAQEAADARGQLRGCLDTVLKDILVPNLQWHAGRTAAAIRTAAVSCLWALVSSGVLSDKQVQEVQETLMPQVLTTLEEDSQTARLLSCRIVGVFLKASDGATEPDKFIKIYPELLKRLDDVSNEVRLAATSTLVTWLECIRNEAGQCCYRSSVQHLYRELLVYLDDPERAVQDAVLEALKAGSVLFPDVLVRETEAALHRHRSPAYCEQLLRHLQAAPPAQ", "length": 863, "header": "tr|F1RIY8-1|F1RIY8_PIG Isoform 1 of Dynein axonemal assembly factor 5 OS=Sus scrofa OX=9823 GN=DNAAF5 PE=1 SV=3 CANONICAL=F1RIY8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R116-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R116/entry", "sequence": { "sequence": "MGRPWPRLPAARFLLDDAVRVLRSTLLDPFAAVRRESCECAAGLARATPDHFHMQSESLIGPLMQTVSHQHWKVRVAVIEATGAVIQFGSGKSVDDVLPHFAQRLFDDVPQVRRAVTRVVGGWLLDLRDRYSFFHKLIPLLLSGFDDDIPDIAHEATSLWEKVGLQWQTENEEDLKDKLDFASPPPAHHPSPERRPGLGCRELVFRNLAKILPAICHDITDWVAGTRVKSAQLLAVLLLHAEDHATQHLEPILRTLLHACADEEGAVVRSCISCAELIGAFVSPEVFLKLILTTLRKSPSAPGLLVLASVVRGCPREALRPHVKVIATELAQAHICQGPENPVYGERLLLCVQALVAGSREDCREAALPLLEVLVTVLALWGATGLGDKVQETLAALAAAEGVDGSQDLFREHLGPLLEWVAASHRDWTVHSAEVLLLDVVVTHSGPALGEALPQLVPILRSCLQPARDPALRLQLFSTLTRVLLRAQEAADARGQLRGCLDTVLKDILVPNLQWHAGRTAAAIRTAAVSCLWALVSSGVLSDKQVQEVQETLMPQVLTTLEEDSQTARLLSCRIVGVFLKASDGATEPDKFIKIYPELLKRLDDVSNEVRLAATSTLVTWLECIRNEAGQCCYRSSVQHLYRELLVYLDDPERAVQDAVLEALKAGSVLFPDVLVRETEAALHRHRSPAYCEQLLRHLQAAPPAQ", "length": 706, "header": "tr|A0A5G2R116-1|F1RIY8_PIG Computationally mapped isoform of Dynein axonemal assembly factor 5 OS=Sus scrofa OX=9823 GN=DNAAF5 PE=1 SV=2 CANONICAL=F1RIY8-1" }, "locus": { "chromosome": "3", "start_pos": 461293, "end_pos": 417442, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079612.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079612.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067901.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067901.2" } ] } }, { "isoform_ac": "F1RIY8-1", "url": "https://www.uniprot.org/uniprotkb/F1RIY8/entry", "sequence": { "sequence": "MAALVAAEAAVTRGPAEAAEAAEAAELSRVLSRLLPGLEADNKLGRRRALEALQRELEAARPEAPDADPAAAAAAFQGPWARLLLPRLLRCLTDPAEGCRALAVHLLDLGLRRAARPCDALPRLLPALAARLACPEPARRPPPEPCEELRLALVQLLGLAVRLGGTALAPHLDDAVRVLRSTLLDPFAAVRRESCECAAGLARATPDHFHMQSESLIGPLMQTVSHQHWKVRVAVIEATGAVIQFGSGKSVDDVLPHFAQRLFDDVPQVRRAVTRVVGGWLLDLRDRYSFFHKLIPLLLSGFDDDIPDIAHEATSLWEKVGLQWQTENEEDLKDKLDFASPPPAHHPSPERRPGLGCRELVFRNLAKILPAICHDITDWVAGTRVKSAQLLAVLLLHAEDHATQHLEPILRTLLHACADEEGAVVRSCISCAELIGAFVSPEVFLKLILTTLRKSPSAPGLLVLASVVRGCPREALRPHVKVIATELAQAHICQGPENPVYGERLLLCVQALVAGSREDCREAALPLLEVLVTVLALWGATGLGDKVQETLAALAAAEGVDGSQDLFREHLGPLLEWVAASHRDWTVHSAEVLLLDVVVTHSGPALGEALPQLVPILRSCLQPARDPALRLQLFSTLTRVLLRAQEAADARGQLRGCLDTVLKDILVPNLQWHAGRTAAAIRTAAVSCLWALVSSGVLSDKQVQEVQETLMPQVLTTLEEDSQTARLLSCRIVGVFLKASDGATEPDKFIKIYPELLKRLDDVSNEVRLAATSTLVTWLECIRNEAGQCCYRSSVQHLYRELLVYLDDPERAVQDAVLEALKAGSVLFPDVLVRETEAALHRHRSPAYCEQLLRHLQAAPPAQ", "length": 863, "header": "tr|F1RIY8-1|F1RIY8_PIG Isoform 1 of Dynein axonemal assembly factor 5 OS=Sus scrofa OX=9823 GN=DNAAF5 PE=1 SV=3 CANONICAL=F1RIY8-1" }, "locus": { "chromosome": "3", "start_pos": 461293, "end_pos": 424552, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008275.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008275.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008056.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008056.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R116", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R116" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737767", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737767", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZGV1-1", "protein_name": "Dynein axonemal assembly factor 5", "gene_name": "DNAAF5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAACGAAELAQALSRPLSCLQGPECGRAARLRALEAIRAEVQERPLSSEAVQEVFEAQLVRPLARCLAGDAAERCRELALQLLLHGLSRCERPGEALPVLLPVLAQRLGPPQGAEPCEELRLGLLQLLGLLLRRGGTAVAPYLSDVVGILQAALLDHFAEVRRESCRCAVACAQAVPEHFHMQSESLIKPLMQTISHQHYRVRVDVIQATGTVIQFGNGKSVDDVLSHLAQRLFDEIPKVRQAVTTVIGEWLLHLRDRYSYFHKLIPLLLGSVTDDIPENMTLAWTYWEKVGLQWEKENEEDLKDKMDFSVPPSHYPKGVTRPGLGCRELVSRNLSKVLPGLCHDLTDWVESTRVKASQLLYVLLLHAEDHITQHMELLLRALYQACLDRESEVVRNCVKAAELIGTFVSPKVSLRLITSAFEITPKPSCLMVLAAVIRGSPKEILQPHLSDLGDTLSQAGVCQRSEEVLYMEQLLCCVRALIEVCQEDCQGICLQLMKVLVAVMAVPNSEHLKEKAEETMCSLAEVQQLDGFLYLYKQHILQLLEWVSVSHDSWTCYSPEILQLGVIATHSGPVIGEALHDFILILKTCLQPNKDPQMRLKLFTVLSELLQKANETINSQGLFPSYLEIVIKDILAPNLQWHAGRTAAAIRTTAVSCLWALIHCQMLAPEEILKVKDALMPQIIAAMDEDSKISRLMGCRIVGGILKVCGRQFDEIQLGKTYPEVLKRLDDASADVRLTAAHTLTDWFKCLKDSDVKSAMKSHIEFLYQELLIHLDDQDPDTQSAVLEVLKEGSVLYPELLVREVEVAIHKHRTPAYCNQLLHHIQTTREAA", "length": 833 }, "evidence": [ { "id": "F1RIY8", "url": "https://omabrowser.org/oma/group/F1RIY8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LDA6-1", "protein_name": "Dynein axonemal assembly factor 5", "gene_name": "Dnaaf5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPAEAEVAAGFAEADEAAELTRALGRLLPGLETESKLGRRRALEALEHALEEAVRPGTDSAAFQGPWARLLLPRLLRLLTDPAEGCRALAAHLLDLGLRRAARPRDALPRLLPALTARLARPESTRPPPEPCEELRLALVQLLHLAVDLGGAALAPHLDDAVRALRGALLDPFAAVRREGCECAAALARAIPEHFHMQSESLIGPLMQTISHQHWKVRVAVIEATGTVIQFGNGNSVDDVLSHFAQRLFDDVPQVRQAVTSVVGGWLLNLRDRYSFFHKLTPLLLSSFSDEMPEVRQTATSLWEKVGLQWQEENEADLKDKLDFASPPPPNYPEHESRPGLGCRELVFRNLSKVLPAICHDITDWVVGTRLKAAQLLPVLLLHAEDHITQHLEIVLRTLHQACTDEEKAVVSSCVRAAELIGTFVSPEVFLKLILAMLKKAPSASGLLILASVIRGCPRNALQPHLKVIATELAQEHICQGSENNSYLEHLLLCVQTLLSVCQEDCCAASLQLSEVLVTIMAVSDAVSLEKKAQKTMDTLAEVEDIPSSQDLYRKHLGALLERLTASHGEWTVHSVQLLKFTVLLTQAGPAVGEALQHVIPTLRACLQPTTDPHMRLKLFSILSSLLLRPKDTVDSQGQFHGYLDMVINDILAPNLQWHAGRTAAAIRTATISCLWALISSDILSAKQVQEAQETLMPQVLATLEDDSQTTRLISCRIISRFLKNSGDTMEPEKFLKVYPELLKRLDDVSNDVRMAAASALLTWLKCIESVDGKSAYQSSVQFLYRELLVHLDDPESAIQDTVLEVLKEGSVLFPDVLVRETEAVVHKHRSATYCEQLLQHMQTMAAAR", "length": 851 }, "evidence": [ { "id": "F1RIY8", "url": "https://omabrowser.org/oma/group/F1RIY8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B9EJR8-1", "protein_name": "Dynein axonemal assembly factor 5", "gene_name": "Dnaaf5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPAEAEVAAAPGLTEAAEAAELTRALSRLLPGLETESKLGRRRALEALEQVLEEAVRPGADSAAFQGPWARLLLPRLLRLLSDPAEGCRALAAHLLDLGLRRAARPRDALPRLLPALSARLARPELARPPPEPCEELRLALVQLLHLAVDLGGAALAPHLDDAVRALRAALLDPFAAVRREGCECAAALARATPEHFHMQSESLIGPLMQTISHQHWKVRVAVIEATGTVIQFGSGNSVDDVLSHFAQRLFDDVPQVRQAVTSVVGGWLLNLRDRYSFLHKLTPLLLSSFSDEMPEIRQTATSLWEKVGLQWQQENEADLKDKLDFASPPPPNYPEHESRPGLGCRELVFRNLSKVLPAICHDITDWVVGTRVKAAQLLPVLLLHAEDHITQHLEIVLRTLHQACTDEEKAVVGSCIRAAELIGTFVSPEVFLKLILAMLKKAPSASGLLILASVIRGCPRNALQPHVTVIATELAQEHICQGSENNLYLEHLLLCVQALLSVCQEDCRAASLQFLEVLVTIMAVSDAVGLEKKAQKTMDTLAEVEDIPSSQDLYRKHVGALLERLTASHGEWAVHSVQLLKFTVLLTQAGPAVGEALQHVIPTLRACLQPSTDPHMRLKLFSILSMMLLRPKDTVDSQGQFRGYLDMVINDILAPNLQWHAGRTAAAIRTAAISCLWALISSDILSAKQVQEAQETLMPQVLATLEDDSQTTRLMSCRIINMFLKNSGDTMEPEKFLKVYPELLKRLDDVSNDVRMAAASALLTWLKCIESLDGKSAYQSSVQFLYRELLVHLDDPESAIQDTVLEVLKEGSVLFPDVLVRETEAVVHKHRSATYCEQLLQHMQTMAAAR", "length": 853 }, "evidence": [ { "id": "F1RIY8", "url": "https://omabrowser.org/oma/group/F1RIY8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3N314-1", "protein_name": "Dynein axonemal assembly factor 5", "gene_name": "DNAAF5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALVAPEAAAPQGPTEAGETTEAAELSRSLSRLLPGLEADSKLGRRRALEALQRVLEAAQPEAPDADPDAAAAAFQGPWVHLLLPRLLRRLTDPAEGCRALAVHLLGLGLRRAARPRDALPRLLPALAARLASPEPARRPPPEACEELRLALVQLLGLAVRLTGAAFAPHLDDAVRALRCTLLDPFAAVRRESCECAAGLARATPDHFHMQSESLIGPLMQSISHQHWKVRVAVIEATGAAIQFGSGKSVDDVLPHFAQRLFDDVPQVRQAVMRVVGGWLLSLRDRYSFFHKLIPLLLSGFHDEIPEIASEASSLWERVGLQWQTENEEDLKDKLDFASPPPAHHPSPGSRPGLGCRELVFRNLSKILPAVCHDIDDWVAGTRVKSAQLLAVLLLHAEDHVTQHLEPVLRALLRACADEEAAVVSSCTRSAELVGTFVSPEVFLKLILSTLRKSPSPSGLLVLASLIQGCPREALRPHVKVIATELAQAHICQGSENRLYGERLLQCVQAVVSAGREDCRGAGEPLLEVLVTVLALWGPAGLSDKVQETLAALAAVEGMDGSQDLFRARVSPLLEWLAASHRDWTGHSVELLQLDVVLSHSGPALGEALPQLVPILRSCLQPARDPAMRLKLFSTLTGVLLGAPETVDSQGQLHGYLDTLVQDIFVPNLQWHAGRTAAAIRTAAVSCLWALVSSGGLSDGQIQDMQETLMPQILTTLEEDSQMTRLISCQIINLFLKTSNGVIDPDKFIKIYPELLKRLDDVSDDVRLAATSALVTWLQRVQSEASKCCYQSSVRHLYRELLVYLDDPEHAVQDAVLEALKAGSVLFPDLLVKETEAVLHKHRSPTYCEQLLQHLQALPPAQ", "length": 863 }, "evidence": [ { "id": "F1RIY8", "url": "https://omabrowser.org/oma/group/F1RIY8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86Y56-1", "protein_name": "Dynein axonemal assembly factor 5", "gene_name": "DNAAF5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALGVAEAVAAPHPAEGAETAEAVELSRALSRLLPGLEADSKPGRRRALEALRRALEEPGPAADPTAFQGPWARLLLPRLLRCLSDPAEGCRALAVHLLDLGLRRAARPRDALPRLLPALAARLAGPVPARRPPEACEELRLALVQLLGLAVDLCGAALAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQHWKVRVAAIEATGAVIHFGNGKSVDDVLSHFAQRLFDDVPQVRRAVASVVGGWLLCLRDRYSFFHKLIPLLLSSLNDEVPEVRQLAASLWEDVGLQWQKENEEDLKDKLDFAPPTPPHYPPHERRPVLGCRELVFRNLSKILPALCHDITDWVVGTRVKSAQLLPVLLLHAEDHATQHLEVVLRTLFQACTDEEAAVVQSCTRSAELVGTFVSPEVFLKLILSTLKKTPSASGLLVLASAMRGCPREALQPHLAAIATELAQAHICQASENDLYLERLLLCVQALVSVCHEDCGVASLQLLDVLLTIVALAGATGLRDKAQETMDSLAMVEGVSSCQDLYRKHIGPLLERVTASHLDWTAHSPELLQFSVIVAQSGPALGEALPHVVPTLRACLQPSQDPQMRLKLFSILSTVLLRATDTINSQGQFPSYLETVTKDILAPNLQWHAGRTAAAIRTAAVSCLWALTSSEVLSAEQIRDVQETLMPQVLTTLEEDSKMTRLISCRIINTFLKTSGGMTDPEKLIRIYPELLKRLDDVSNDVRMAAASTLVTWLQCVKGANAKSYYQSSVQYLYRELLVHLDDPERAIQDAILEVLKEGSGLFPDLLVRETEAVIHKHRSATYCEQLLQHVQAVPATQ", "length": 855 }, "evidence": [ { "id": "F1RIY8", "url": "https://omabrowser.org/oma/group/F1RIY8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8INF7-1", "protein_name": "Dynein axonemal assembly factor 5", "gene_name": "Dnaaf5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGFDIDSQKICSDLESSDRRLKTTVLDELLDKCKEATNSESADKIADVFDKLYLHLLKCYEDRFESVRSKAIQVVSAFLSSLPPTDFHLMNVVSTLAERMGKAETVEPSEEIRLLYIAQLNLMICLYEKMENVGVFRECYPLVVKILIKSIKDDYPVVQREGCSAVVTLSRLADTQEFRPFTESILLPLYTMLNHKHAQARISAIQAIARLSLHMDASGDAMRRLFNEVSPLLMDTMPLVRREVGQMGILMLMELLDRYSFFERILPLVLCCLKDESPEVLNHIYPQWLKCGIQYFNENEAELSQQEISDLPVENYPKDVKRPTIGCRGLVQRSLRLLQLITRETSDWKDNVRLHALKLLYQFVLHAEAAMTAKFFEIYGDLAHACIDHVAEVNAEAAKVADLMGRLLSYDAWIDHGFDGLERNARESYMRCFYHMFTASLGGTYEQLMRLAKLLRCTDYSHTLKPGFQHYILKLLNTIVDKTLKINAGQNELEDLYESVYVCAIKVMALSSSLENVGDEDVNFGQTLIEKMVKLLNTSVPKIHERWFHLALQDVINLDAALEDNAEPVMLLNGLINMCHIRATYVHDLIEKVKIVFQHCCDSAQVKIFSSLSLATLFWSKTMNVERESSTQMLSEFVSQIVEPYLTWKAGSNAEAMRSLAMATLCALAQGAESESVEVLPSLAKYMPSLLEDRNVTTRHYAIKAVVYFREMSVEDLKPLAYATMQRMDDPSAGIRILAALAMGKLKPKFAETDTEENYEKEVWDAIVKRAMDLLLLYHESPEKDMRAAVAVTLKVLAKSHPEAWEERYQRALPMAQKKDLLTELYDKLTINEDSHTEVTSASQD", "length": 845 }, "evidence": [ { "id": "F1RIY8", "url": "https://omabrowser.org/oma/group/F1RIY8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cilium movement", "id": "GO:0003341", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003341", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "pmid": "" }, { "name": "outer dynein arm assembly", "id": "GO:0036158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036158", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "pmid": "" }, { "name": "inner dynein arm assembly", "id": "GO:0036159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036159", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "dynein intermediate chain binding", "id": "GO:0045505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045505", "evidence": [ { "database": "UniProtKB", "id": "F1RIY8", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 863, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RIY8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RIY8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" }, { "id": "PF24573", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24573" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dynein axonemal assembly factor 5 HEAT-repeat", "eco_id": "ECO_0000259", "start_pos": 345, "end_pos": 537, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RIY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIY8" }, { "id": "PF25757", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25757" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dynein axonemal assembly factor 5 TPR repeats", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 335, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RNB1-1", "uniprot_ac": "F1RNB1", "uniprot_id": "F1RNB1_PIG", "mass": { "chemical_mass": 23178.0, "monoisotopic_mass": 23178.0 }, "refseq": { "ac": "XP_003358231", "name": "stromal cell-derived factor 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358231" }, "gene_names": [ { "name": "SDF2", "type": "recommended", "evidence": [ { "id": "F1RNB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNB1" } ] }, { "name": "SDF2", "type": "synonym", "evidence": [ { "id": "XP_003358231", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358231" } ] } ], "protein_names": [ { "name": "Stromal cell derived factor 2", "type": "synonym", "evidence": [ { "id": "F1RNB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNB1/entry#names_and_taxonomy" } ] }, { "name": "stromal cell-derived factor 2", "type": "synonym", "evidence": [ { "id": "XP_003358231", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358231" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNB1", "url": "https://www.uniprot.org/uniprotkb/F1RNB1" } ], "common_name": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003358231", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358231", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R193", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R193", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R193-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R193-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNB1", "url": "https://www.uniprot.org/uniprotkb/F1RNB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNB1-1", "url": "https://www.uniprot.org/uniprotkb/F1RNB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL", "length": 211, "header": "tr|F1RNB1-1|F1RNB1_PIG Isoform 1 of Stromal cell derived factor 2 OS=Sus scrofa OX=9823 GN=SDF2 PE=1 SV=2 CANONICAL=F1RNB1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R193-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R193/entry", "sequence": { "sequence": "RTVTGLDPNPSRFTARFQLLQAGTTQCERGRHVENYSSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL", "length": 197, "header": "tr|A0A5G2R193-1|F1RNB1_PIG Computationally mapped isoform of Stromal cell derived factor 2 OS=Sus scrofa OX=9823 GN=SDF2 PE=1 SV=1 CANONICAL=F1RNB1-1" }, "locus": { "chromosome": "12", "start_pos": 44906312, "end_pos": 44897572, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072068.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072068.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064282.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064282.1" } ] } }, { "isoform_ac": "F1RNB1-1", "url": "https://www.uniprot.org/uniprotkb/F1RNB1/entry", "sequence": { "sequence": "MAVVSLLLFGGLWSAVGSSNLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPNELLKAEAHHSEL", "length": 211, "header": "tr|F1RNB1-1|F1RNB1_PIG Isoform 1 of Stromal cell derived factor 2 OS=Sus scrofa OX=9823 GN=SDF2 PE=1 SV=2 CANONICAL=F1RNB1-1" }, "locus": { "chromosome": "12", "start_pos": 44906792, "end_pos": 44897572, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019344.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019344.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018831.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018831.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R193", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R193" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625663", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625663", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7GD56-1", "protein_name": "Stromal cell-derived factor 2 isoform X2", "gene_name": "Sdf2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVLSLLLLGGLWSAVGASDMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLKAEVHHAEL", "length": 211 }, "evidence": [ { "id": "F1RNB1", "url": "https://omabrowser.org/oma/group/F1RNB1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A4H5-1", "protein_name": "Stromal cell derived factor 2", "gene_name": "Sdf2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIRALGSRMAVLSLLLLGGLWSAVGASNMAVVTCGSVVKLLNIRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLRAEVHHAEL", "length": 219 }, "evidence": [ { "id": "F1RNB1", "url": "https://omabrowser.org/oma/group/F1RNB1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3SZ45-1", "protein_name": "Stromal cell-derived factor 2", "gene_name": "SDF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVVSLLLFGGLWSAVGSSNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTATVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLKAEGHHTEL", "length": 211 }, "evidence": [ { "id": "F1RNB1", "url": "https://omabrowser.org/oma/group/F1RNB1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54P23-1", 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"protein_names": [ { "name": "Tetratricopeptide repeat domain 13", "type": "synonym", "evidence": [ { "id": "F1RG59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG59/entry#names_and_taxonomy" } ] }, { "name": "tetratricopeptide repeat protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001926697", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926697" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RG59", "url": "https://www.uniprot.org/uniprotkb/F1RG59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC13", "url": "https://www.uniprot.org/uniprotkb/F1RG59", "locus": { "chromosome": "14", "start_pos": 59509549, "end_pos": 59409123, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010180", "url": "https://www.ensembl.org/id/ENSSSCG00000010180" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010180", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010180", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157092", "url": "https://www.ncbi.nlm.nih.gov/gene/100157092", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZJL3", "url": "https://www.orthodb.org/?gene=A0A286ZJL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287B6F7", "url": "https://www.orthodb.org/?gene=A0A287B6F7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RG59", "url": "https://www.orthodb.org/?gene=F1RG59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44523", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44523", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44523:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44523:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926697", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926697", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZJL3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZJL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASK7", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6F7", "url": "https://www.uniprot.org/uniprotkb/A0A287B6F7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6F7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6F7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG59", "url": "https://www.uniprot.org/uniprotkb/F1RG59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG59-1", "url": "https://www.uniprot.org/uniprotkb/F1RG59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPAGCGCCGCWGGAVAAAGAARRVPVLLLLGVLSAGPRPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDVKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGVMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELVCVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL", "length": 858, "header": "tr|F1RG59-1|F1RG59_PIG Isoform 1 of Tetratricopeptide repeat domain 13 OS=Sus scrofa OX=9823 GN=TTC13 PE=4 SV=1 CANONICAL=F1RG59-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJL3/entry", "sequence": { "sequence": "MAPAGCGCCGCWGGAVAAAGAARRVPVLLLLGVLSAGPRPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGVMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELVCVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL", "length": 805, "header": "tr|A0A286ZJL3-1|F1RG59_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 13 OS=Sus scrofa OX=9823 GN=TTC13 PE=4 SV=2 CANONICAL=F1RG59-1" }, "locus": { "chromosome": "14", "start_pos": 59491300, "end_pos": 59409233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048649.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048649.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031748.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031748.2" } ] } }, { "isoform_ac": "A0A287ASK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASK7/entry", "sequence": { "sequence": "MAPAGCGCCGCWGGAVAAAGAARRVPVLLLLGVLSAGPRPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDVKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGVMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELVCVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCISFSTHVTPCAQFMGTVEDSWPSTRVPGAHGQELFR", "length": 890, "header": "tr|A0A287ASK7-1|A0A287ASK7_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 13 OS=Sus scrofa OX=9823 GN=TTC13 PE=4 SV=2 CANONICAL=F1RG59-1" }, "locus": { "chromosome": "14", "start_pos": 59491835, "end_pos": 59409233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042973.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042973.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046891.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046891.2" } ] } }, { "isoform_ac": "A0A287B6F7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6F7/entry", "sequence": { "sequence": "MAPAGCGCCGCWGGAVAAAGAARRVPVLLLLGVLSAGPRPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGVMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELVCVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL", "length": 729, "header": "tr|A0A287B6F7-1|A0A287B6F7_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 13 OS=Sus scrofa OX=9823 GN=TTC13 PE=4 SV=1 CANONICAL=F1RG59-1" }, "locus": { "chromosome": "14", "start_pos": 59491300, "end_pos": 59409233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049003.1", "url": "https://www.ensembl.org/id/ENSSSCT00000049003.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051886.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051886.1" } ] } }, { "isoform_ac": "A0A5G2R1N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1N6/entry", "sequence": { "sequence": "MAPAGCGCCGCWGGAVAAAGAARRVPVLLLLGVLSAGPRPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDVKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGVMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELVCVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKRAAPAPYTG", "length": 829, "header": "tr|A0A5G2R1N6-1|F1RG59_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 13 OS=Sus scrofa OX=9823 GN=TTC13 PE=4 SV=1 CANONICAL=F1RG59-1" }, "locus": { "chromosome": "14", "start_pos": 59509237, "end_pos": 59409233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082044.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082044.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068102.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068102.1" } ] } }, { "isoform_ac": "F1RG59-1", "url": "https://www.uniprot.org/uniprotkb/F1RG59/entry", "sequence": { "sequence": "MAPAGCGCCGCWGGAVAAAGAARRVPVLLLLGVLSAGPRPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDVKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGVMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELVCVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPARSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL", "length": 858, "header": "tr|F1RG59-1|F1RG59_PIG Isoform 1 of Tetratricopeptide repeat domain 13 OS=Sus scrofa OX=9823 GN=TTC13 PE=4 SV=1 CANONICAL=F1RG59-1" }, "locus": { "chromosome": "14", "start_pos": 59491300, "end_pos": 59409233, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011146.3", "url": "https://www.ensembl.org/id/ENSSSCT00000011146.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010857.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010857.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1N6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGN8-1", "uniprot_ac": "F1RGN8", "uniprot_id": "F1RGN8_PIG", "mass": { "chemical_mass": 49066.0, "monoisotopic_mass": 49066.0 }, "refseq": { "ac": "XP_005669192", "name": "smoothelin-like protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669192" }, "gene_names": [ { "name": "SMTNL2", "type": "recommended", "evidence": [ { "id": "F1RGN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGN8" } ] }, { "name": "SMTNL2", "type": "synonym", "evidence": [ { "id": "XP_005669192", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669192" } ] } ], "protein_names": [ { "name": "Smoothelin like 2", "type": "synonym", "evidence": [ { "id": "F1RGN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGN8/entry#names_and_taxonomy" } ] }, { "name": "smoothelin-like protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005669192", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669192" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGN8", "url": "https://www.uniprot.org/uniprotkb/F1RGN8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMTNL2", "url": "https://www.uniprot.org/uniprotkb/F1RGN8", "locus": { "chromosome": "12", "start_pos": 50582629, "end_pos": 50602700, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017885", "url": "https://www.ensembl.org/id/ENSSSCG00000017885" } ] } } ], "crossref": [ { "id": "F1RGN8", "url": "https://alphafold.ebi.ac.uk/entry/F1RGN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017885", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017885", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21261", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21261", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523750", "url": "https://www.ncbi.nlm.nih.gov/gene/100523750", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "APHQGER", "url": "https://omabrowser.org/oma/group/APHQGER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGN8", "url": "https://www.orthodb.org/?gene=F1RGN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669192", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669192", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R298", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R298", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R298-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R298-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGN8", "url": "https://www.uniprot.org/uniprotkb/F1RGN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGN8-1", "url": "https://www.uniprot.org/uniprotkb/F1RGN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPAPDAEEARTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGMAPTPGTPSPPPAPSVPDRAPRLGTARFASHATFSLSGRSQSVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRLPHQPVTAVTRVSERFSGETSATALSATSAAKLGSPSEATTPWTPSPSEKNSSLSRSLSTLTASRNNDSSPPLVTPPQSPPSPQPPATTQAHRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRSETRAKLKRSQSFGVASASSIKQILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRRQNFELAFTMAENLANCERLIEVEDMMLMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 450, "header": "tr|F1RGN8-1|F1RGN8_PIG Isoform 1 of Smoothelin like 2 OS=Sus scrofa OX=9823 GN=SMTNL2 PE=1 SV=1 CANONICAL=F1RGN8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R298-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R298/entry", "sequence": { "sequence": "MEPAPDAEEARTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGMAPTPGTPSPPPAPSVPDRAPRLGTARFASHATFSLSGRSQSVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRLPHQPVTAVTRVSERFSGETSATALSATSAAKLGSPSEATTPWTPSPSEKNSSLSRSLSTLTASRNNDSSPPLVTPPQSPPSPQPPATTQAHRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRSETRAKLKRSQSFGVASASSIKQILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRRQNFELAFTMAENLANCERLIEVEDMMLMGRKPDPMCRFYSQLSFLGDLLQIFIRSNSICMYH", "length": 460, "header": "tr|A0A5G2R298-1|F1RGN8_PIG Computationally mapped isoform of Smoothelin like 2 OS=Sus scrofa OX=9823 GN=SMTNL2 PE=1 SV=2 CANONICAL=F1RGN8-1" }, "locus": { "chromosome": "12", "start_pos": 50602610, "end_pos": 50582665, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082751.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082751.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068322.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068322.2" } ] } }, { "isoform_ac": "F1RGN8-1", "url": "https://www.uniprot.org/uniprotkb/F1RGN8/entry", "sequence": { "sequence": "MEPAPDAEEARTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGMAPTPGTPSPPPAPSVPDRAPRLGTARFASHATFSLSGRSQSVDQHDEASGSETRRTSNSCIFENGHQPGAGLGDGPPEAPQTIPAPEPPKPRPVSLSLRLPHQPVTAVTRVSERFSGETSATALSATSAAKLGSPSEATTPWTPSPSEKNSSLSRSLSTLTASRNNDSSPPLVTPPQSPPSPQPPATTQAHRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGRSETRAKLKRSQSFGVASASSIKQILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRRQNFELAFTMAENLANCERLIEVEDMMLMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 450, "header": "tr|F1RGN8-1|F1RGN8_PIG Isoform 1 of Smoothelin like 2 OS=Sus scrofa OX=9823 GN=SMTNL2 PE=1 SV=1 CANONICAL=F1RGN8-1" }, "locus": { "chromosome": "12", "start_pos": 50602610, "end_pos": 50583446, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019462.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019462.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018945.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018945.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 93, "start_aa": "Thr", "end_pos": 93, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr93", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 96, "start_aa": "Thr", "end_pos": 96, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr96", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R298", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R298" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PRI5-1", "protein_name": "Smoothelin like 2", "gene_name": "SMTNL2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASEIDNLNSHEAKTVCEALGRYEDTLRGAVREIHVDIQVFKQGVSRQVDEVLRLASPLARTVSELQQENQRLRVQLERLARQVEALGRSAGLPQEWQEEAERSPPAVGPSSPVPAFSGDRFSTLAKLAVSGRSQSVDLDDHHKPEFRRVFSSSLIENGHQSSSGQAKASHELTSFYMSDSSPEAHAPAMTLQMPHLPVTAVTRISEKFSGENIHSAGTTNASTGLLGQNQSKNEMTLKTSNQSVRTMTSSANGVNATSVTKPVSTASYEASSGNKTGESAADSYCGMTPKAHSSPPTVHRQVERRRELVRSQTLPRTTGTQARKALFEKFEQDSGKGKGQSRAKLKRSQSFGVASASSIKQILLDWCRSKTIGYKHIDLQNFSSSWNDGMAFCALVHSFFPESFDYNKLDPANRKQNFELAFTMAEKMAHCDRLIEVDDMMMMGHKPDPMCVFTYVQSLYNHLRHFE", "length": 468 }, "evidence": [ { "id": "F1RGN8", "url": "https://omabrowser.org/oma/group/F1RGN8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZUC1-1", "protein_name": "Smoothelin-like 2", "gene_name": "Smtnl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPTPDAEEAHTVREALGRYEAALEGAVRALHEDMQGLQRGVERRVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGVSPAPGTPSPPPATTVTDRAPRLGTARFSSHATFSLSGRSPSMEHDEVSDLEARRTSNSCIMENGHQLDAGSANGSSEVQASSAQESPRPRPVSLSLRLPHQPVTAVTRVSEKFSGETSASALSPTSAAIVGGFTPSPSEAISPWTPSPTEKSSSFTRSLSGSGYGAVTAGKRKDSPPLVTPPQSPPSSQPPAMTQAPRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTASKGKGETRAKLKRSQSFGVASASSIKQILLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRQKNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 456 }, "evidence": [ { "id": "F1RGN8", "url": "https://omabrowser.org/oma/group/F1RGN8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KI85-1", "protein_name": "Smoothelin-like protein 2", "gene_name": "SMTNL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESAPDAEEARTVREALGRYEAALEGAVRALHEDMQGLQRGVEQRVAEALRLAGPLARTVAELQRDNQRLQTQLERLTRQVESLGLTTGLAPAPGTPSPPPAPGVPNRAPRLGTARFASHATFSLSGRSQSLDHHDEASELEMRRTSNSCIIENGHQPGADPGDGPPEATQTIPAPEPPKPRPVSLSLRLPHQPVTAVTRVSERFSGETSATALSPTSAAILGGLSSSPSEATTPWTPSPSEKNSSLPRSLSSSGFGAMTASRNNNSPPLVTPPQSPPSPQPPATTQAHRPGERRRELVRSQTLPRTSGAQARKALFEKWEQDTAGKGKGETRAKLKRSQSFGVASASSIKQILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRRQNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 458 }, "evidence": [ { "id": "F1RGN8", "url": "https://omabrowser.org/oma/group/F1RGN8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q2TAL5-1", "protein_name": "Smoothelin-like protein 2", "gene_name": "SMTNL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPAPDAQEARTVREALGRYEAALEGAVRALHEDMRGLQRGVERRVAEAMRLAGPLARTVADLQRDNQRLQAQLERLTRQVEALGLASGMSPVPGTPGTPSPPPAPGVPDRAPRLGSARFASHATFSLSGRGQSLDHDEASESEMRKTSNSCIMENGHQPGAGPGDGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSDRFSGETSAAALSPMSAATLGGLNPSPSEVITPWTPSPSEKNSSFTWSVPSSGYGAVTASKHSNSPPLVTPPQSPVSPQPPAITQVHRQGERRRELVRSQTLPRTSEAQARKALFEKWEQETAAGKGKGEARARLKRSQSFGVASASSIKQILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNSLSPTQRQKNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 461 }, "evidence": [ { "id": "F1RGN8", "url": "https://omabrowser.org/oma/group/F1RGN8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CI12-1", "protein_name": "Smoothelin-like protein 2", "gene_name": "Smtnl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSPDAEEAHTVREALGRYEAALEGAVRALHEDMQGLQRGVERRVAEALRLAGPLARTVAELQRDNQRLQAQLERLTRQVEALGLATGVSPAPGTPSPPPAATVTDRAPRLGTARFSSHATFSLSGRSPSVEHDEASDLEVRRASNSCILENGHQLDAGPANGSSEVQTSSAQEPPRPRPVSLSLRMPHQPVTAVTRVSEKFSGETSASALSPTSAAIVGGFTPSPSEAISPWTPSPTEKSSSFTRSLSGSGYGAVTAGKRKDSPPLVTPPQSPPSSQPPAMTQAPRQGERRRELVRSQTLPRTSGAQARKALFEKWEQDTASKGKGETRAKLKRSQSFGVASASSIKQILLEWCRSKTVGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNALSPTQRQKNFELAFTMAENLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE", "length": 456 }, "evidence": [ { "id": "F1RGN8", "url": "https://omabrowser.org/oma/group/F1RGN8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "F1RGN8", "url": "https://www.uniprot.org/uniprotkb/F1RGN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RGN8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 450, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RGN8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RGN8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGN8" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", 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"Protein Classification" ] }, { "id": "IPR019103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519788", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519788", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WTPKNDI", "url": "https://omabrowser.org/oma/group/WTPKNDI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RNK2", "url": "https://www.orthodb.org/?gene=F1RNK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12917", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12917", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12917:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12917:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09668", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09668", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R2X6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNK2", "url": "https://www.uniprot.org/uniprotkb/F1RNK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNK2-1", "url": "https://www.uniprot.org/uniprotkb/F1RNK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDTQPHNILQRRLLETNLSKLRSSRVPWASKSSRLSQAKSEGLRKSEEDMIWVPCQCAGKDVKALVDTGCQYNLISSACVDRLGLKEHVRSHRLEGEKLCLPRHLKVMGQIEHLVITLGSLRLDCPAAVVEDNEKTLSLGLQTLRSLKCVINLDKHRLIVGKTDKEGIPFVETVAVNEDNTSEA", "length": 239, "header": "tr|F1RNK2-1|F1RNK2_PIG Isoform 1 of TMEM9 domain family member B OS=Sus scrofa OX=9823 GN=NRIP3 PE=4 SV=5 CANONICAL=F1RNK2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R2X6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X6/entry", "sequence": { "sequence": "MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDTQPHNILQRRLLETNLSKLRSSRVPWASKSSRLSQAKSEGLRKSEEDMIWVPCQCAGKDVKALVDTGCQYNLISSACVDRLGG", "length": 140, "header": "tr|A0A5G2R2X6-1|F1RNK2_PIG Computationally mapped isoform of TMEM9 domain family member B OS=Sus scrofa OX=9823 GN=NRIP3 PE=4 SV=1 CANONICAL=F1RNK2-1" }, "locus": { "chromosome": "9", "start_pos": 481027, "end_pos": 462717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079401.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079401.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068552.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068552.1" } ] } }, { "isoform_ac": "F1RNK2-1", "url": "https://www.uniprot.org/uniprotkb/F1RNK2/entry", "sequence": { "sequence": "MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDTQPHNILQRRLLETNLSKLRSSRVPWASKSSRLSQAKSEGLRKSEEDMIWVPCQCAGKDVKALVDTGCQYNLISSACVDRLGLKEHVRSHRLEGEKLCLPRHLKVMGQIEHLVITLGSLRLDCPAAVVEDNEKTLSLGLQTLRSLKCVINLDKHRLIVGKTDKEGIPFVETVAVNEDNTSEA", "length": 239, "header": "tr|F1RNK2-1|F1RNK2_PIG Isoform 1 of TMEM9 domain family member B OS=Sus scrofa OX=9823 GN=NRIP3 PE=4 SV=5 CANONICAL=F1RNK2-1" }, "locus": { "chromosome": "9", "start_pos": 481596, "end_pos": 462717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015920.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015920.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015500.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015500.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2X6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2X6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519788", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519788", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZWS8-1", "protein_name": "Nuclear receptor interacting protein 2", "gene_name": "NRIP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFYSGVLTEPTRKEVEIREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGTSKDTQPHNILQRRLMETNLSKLRGSRGSWASKSDAPAQSSRLNQAKLGSSRSVEDEELLVVSCQCAGKELKAVVDTGSQHNLMSAACLDRLGLRERLEVLPSEEEEISLAHSERVIGRIDRLVLAVGALRVECAALVVEDSEKPFSFGLQTLKSLKCVINLEKHHLVLGKTEREEIPFVDSVGAGAGEHTLEA", "length": 247 }, "evidence": [ { "id": "F1RNK2", "url": "https://omabrowser.org/oma/group/F1RNK2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A2K5-1", "protein_name": "Nuclear receptor interacting protein 3", "gene_name": "Nrip3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMVLGEYFKSTRVPRGGGVPGRPRSSPSSWPPPKSRGPVGGDRPEVGGIRSSPNFGAQRCNSEKPSMAQLSVIPGSAAAWTGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDTQPHNILQRRLMETNLSKLRSSRVPWASKTNKFSQTKSEGLKKCDDDDMILVSCQCAGRDVKALVDTGCQHNLISSACVDRLGLRDHVKSHKHEGEKLSLPRHLKVVGQIEHLLITVGSLRLDCPAAVVDDNEKSLSLGLQTLRSLKCIINLDKHRLMVGKTDKEEIPFVETVSVNDDNTSEA", "length": 317 }, "evidence": [ { "id": "F1RNK2", "url": "https://omabrowser.org/oma/group/F1RNK2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NQ35-1", "protein_name": "Nuclear receptor-interacting protein 3", "gene_name": "NRIP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFYSGLLTEGGRKETDMREAASLRQQRRMKQAVQFIHKDSADLLPLDGLKKLGSSKDMQPHNILQRRLMETNLSKLRSGPRVPWASKTNKLNQAKSEGLKKSEEDDMILVSCQCAGKDVKALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLPRHLKVVGQIEHLVITLGSLRLDCPAAVVDDNEKNLSLGLQTLRSLKCIINLDKHRLIMGKTDKEEIPFVETVSLNEDNTSEA", "length": 241 }, "evidence": [ { "id": "F1RNK2", "url": "https://omabrowser.org/oma/group/F1RNK2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RNK2", "url": "https://www.uniprot.org/uniprotkb/F1RNK2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1RNK2", "url": "https://www.uniprot.org/uniprotkb/F1RNK2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aspartic-type endopeptidase activity", "id": "GO:0004190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004190", "evidence": [ { "database": "UniProtKB", "id": "F1RNK2", 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"species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIU3", "url": "https://www.uniprot.org/uniprotkb/F1RIU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCT6B", "url": "https://www.uniprot.org/uniprotkb/F1RIU3", "locus": { "chromosome": "12", "start_pos": 40230073, "end_pos": 40205123, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022196", "url": "https://www.ensembl.org/id/ENSSSCG00000022196" } ] } } ], "crossref": [ { "id": "F1RIU3", "url": "https://alphafold.ebi.ac.uk/entry/F1RIU3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022196", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022196", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03342", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03342", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627253", "url": "https://www.ncbi.nlm.nih.gov/gene/100627253", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627253", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627253", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNAIEDX", "url": "https://omabrowser.org/oma/group/KNAIEDX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIU3", "url": "https://www.orthodb.org/?gene=F1RIU3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-390471", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390471", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6814122", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814122", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005674660", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674660", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R446", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R446", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R446-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R446-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIU3", "url": "https://www.uniprot.org/uniprotkb/F1RIU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIU3-1", "url": "https://www.uniprot.org/uniprotkb/F1RIU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LT97", "url": "https://www.uniprot.org/uniprotkb/I3LT97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LT97-1", "url": "https://www.uniprot.org/uniprotkb/I3LT97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAIKAVNAKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLDEVKIKKEMKREILFDVARTSLQTKVHPELANVLTETVVESVLAVRRPGYPIDLFMVEIMEMKHKSETDTKLIRGLVLDHGARHPDMKKRVEDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVKAERKFIDDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGIVALRRAKRRNMERLSLACGGVAVNSLEDLSIDCLGHASLVHECTLGEEKFTFIEDCVNPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVAIAEALAAYKHSIKGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQTEHSESKQLVGIDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSFKG", "length": 531, "header": "tr|F1RIU3-1|F1RIU3_PIG Isoform 1 of Chaperonin containing TCP1 subunit 6B OS=Sus scrofa OX=9823 GN=CCT6B PE=3 SV=4 CANONICAL=F1RIU3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R446-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R446/entry", "sequence": { "sequence": "MAAIKAVNAKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMGLHPRIIAEGFEAAKIKALEVLDEVKIKKEMKREILFDVARTSLQTKVHPELANVLTETVVESVLAVRRPGYPIDLFMVEIMEMKHKSETDTKLIRGLVLDHGARHPDMKKRVEDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVKAERKFIDDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGIVALRRAKRRNMERLSLACGGVAVNSLEDLSIDCLGHASLVHECTLGEEKFTFIEDCVNPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVAIAEALAAYKHSIKGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQTEHSESKQLVGIDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSFKG", "length": 486, "header": "tr|A0A5G2R446-1|F1RIU3_PIG Computationally mapped isoform of Chaperonin containing TCP1 subunit 6B OS=Sus scrofa OX=9823 GN=CCT6B PE=3 SV=2 CANONICAL=F1RIU3-1" }, "locus": { "chromosome": "12", "start_pos": 40230003, "end_pos": 40205222, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082710.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082710.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071108.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071108.2" } ] } }, { "isoform_ac": "F1RIU3-1", "url": "https://www.uniprot.org/uniprotkb/F1RIU3/entry", "sequence": { "sequence": "MAAIKAVNAKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLDEVKIKKEMKREILFDVARTSLQTKVHPELANVLTETVVESVLAVRRPGYPIDLFMVEIMEMKHKSETDTKLIRGLVLDHGARHPDMKKRVEDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVKAERKFIDDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGIVALRRAKRRNMERLSLACGGVAVNSLEDLSIDCLGHASLVHECTLGEEKFTFIEDCVNPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVAIAEALAAYKHSIKGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQTEHSESKQLVGIDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSFKG", "length": 531, "header": "tr|F1RIU3-1|F1RIU3_PIG Isoform 1 of Chaperonin containing TCP1 subunit 6B OS=Sus scrofa OX=9823 GN=CCT6B PE=3 SV=4 CANONICAL=F1RIU3-1" }, "locus": { "chromosome": "12", "start_pos": 40230003, "end_pos": 40205222, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008493.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008493.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008274.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008274.5" } ] } }, { "isoform_ac": "I3LT97-1", "url": "https://www.uniprot.org/uniprotkb/I3LT97/entry", "sequence": { "sequence": "MAAIKAVNAKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLDEVKIKKEMKREILFDVARTSLQTKVHPELANVLTETVVESVLAVRRPGYPIDLFMVEIMEMKHKSETDTNEVSSGFFYKTAEEKEKLVKAERKFIDDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGIVALRRAKRRNMERLSLACGGVAVNSLEDLSIDCLGHASLVHECTLGEEKFTFIEDCVNPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVAIAEALAAYKHSIKGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQTEHSESKQLVGIDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSFKG", "length": 494, "header": "tr|I3LT97-1|F1RIU3_PIG Computationally mapped isoform of Chaperonin containing TCP1 subunit 6B OS=Sus scrofa OX=9823 GN=CCT6B PE=3 SV=4 CANONICAL=F1RIU3-1" }, "locus": { "chromosome": "12", "start_pos": 40230003, "end_pos": 40205222, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027932.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027932.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027341.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027341.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R446", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R446" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627253", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627253", "resource": "KEGG Pathway" }, { "id": "R-SSC-390471", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390471", "resource": "Reactome", "description": "Association of TriC/CCT with target proteins during biosynthesis" }, { "id": "R-SSC-6814122", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814122", "resource": "Reactome", "description": "Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" } ], "orthologs": [ { "uniprot_canonical_ac": "Q61390-1", "protein_name": "Probable T-complex protein 1 subunit zeta-2", "gene_name": "Cct6b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAIKIANPGAEVTRSQAALAVNICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIKVQKEMKREILLDVARTSLQTKVHAELADILTEAVVDSVLAIRRPGVPIDLFMVEIVEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKHNIVALRRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALGEEKFTFIEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKELLGIDLNTGEPMAAAEAGIWDNYCVKKHLLHSCTVIATNILLVDEIMRAGMSSLRD", "length": 531 }, "evidence": [ { "id": "F1RIU3", "url": "https://omabrowser.org/oma/group/F1RIU3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8L7N0-1", "protein_name": "T-complex protein 1 subunit zeta 2", "gene_name": "CCT6B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPVVMGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQREAMVTAERRSVDERVKKIIELKKKVCGDNDNFVVINQKGIDPPSLDLLAREGIIGLRRAKRRNMERLVLACGGEAVNSVDDLTPESLGWAGLVYEHVLGEEKYTFVEQVKNPNSCTILIKGPNDHTIAQIKDAVRDGLRSVKNTIEDECVVLGAGAFEVAARQHLLNEVKKTVQGRAQLGVEAFANALLVVPKTLAENAGLDTQDVIISLTSEHDKGNVVGLNLQDGEPIDPQLAGIFDNYSVKRQLINSGPVIASQLLLVDEVIRAGRNMRKPTA", "length": 535 }, "evidence": [ { "id": "F1RIU3", "url": "https://omabrowser.org/oma/group/F1RIU3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q92526-1", "protein_name": "Probable T-complex protein 1 subunit zeta-2", "gene_name": "CCT6B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAIKAVNSKAEVARARAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKRKILLDVARTSLQTKVHAELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHKLGTDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQLVGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLK", "length": 530 }, "evidence": [ { "id": "F1RIU3", "url": "https://omabrowser.org/oma/group/F1RIU3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RIU3", "url": 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"database": "UniProtKB", "id": "F1RIU3", "url": "https://www.uniprot.org/uniprotkb/F1RIU3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1RIU3", "url": "https://www.uniprot.org/uniprotkb/F1RIU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIX8-1", "uniprot_ac": "F1RIX8", "uniprot_id": "F1RIX8_PIG", "mass": { "chemical_mass": 25138.0, "monoisotopic_mass": 25138.0 }, "refseq": { "ac": "XP_001927120", "name": "carbonyl reductase family member 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927120" }, "gene_names": [ { "name": "CBR4", "type": "recommended", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ] }, { "name": "CBR4", "type": "synonym", "evidence": [ { "id": "XP_001927120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927120" } ] } ], "protein_names": [ { "name": "3-oxoacyl-[acyl-carrier-protein] reductase", "type": "recommended", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.100", "type": "synonym", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry#names_and_taxonomy" } ] }, { "name": "1.6.5.10", "type": "synonym", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry#names_and_taxonomy" } ] }, { "name": "3-ketoacyl-[acyl-carrier-protein] reductase beta subunit", "type": "synonym", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry#names_and_taxonomy" } ] }, { "name": "Carbonyl reductase family member 4", "type": "synonym", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry#names_and_taxonomy" } ] }, { "name": "Quinone reductase CBR4", "type": "synonym", "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry#names_and_taxonomy" } ] }, { "name": "carbonyl reductase family member 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927120" } ] } ], "function": [ { "annotation": "Component of the heterotetramer complex KAR (3-ketoacyl-[acyl carrier protein] reductase or 3-ketoacyl-[ACP] reductase) that forms part of the mitochondrial fatty acid synthase (mtFAS). Beta-subunit of the KAR heterotetramer complex, responsible for the 3-ketoacyl-ACP reductase activity of the mtFAS, reduces 3-oxoacyl-[ACP] to (3R)-hydroxyacyl-[ACP] in a NADPH-dependent manner with no chain length preference, thereby participating in mitochondrial fatty acid biosynthesis. The homotetramer has NADPH-dependent quinone reductase activity (in vitro), hence could play a role in protection against cytotoxicity of exogenous quinones. As a heterotetramer, it can also reduce 9,10-phenanthrenequinone, 1,4-benzoquinone and various other o-quinones and p-quinones (in vitro).", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8#function" }, { "database": "UniProtKB", "id": "ARBA00057147", "url": "https://www.uniprot.org/uniprotkb/ARBA00057147#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CBR4", "url": "https://www.uniprot.org/uniprotkb/F1RIX8", "locus": { "chromosome": "14", "start_pos": 20682240, "end_pos": 20621981, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009717", "url": "https://www.ensembl.org/id/ENSSSCG00000009717" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009717", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009717", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153608", "url": "https://www.ncbi.nlm.nih.gov/gene/100153608", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153608", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153608", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQKHMVD", "url": "https://omabrowser.org/oma/group/CQKHMVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIX8", "url": "https://www.orthodb.org/?gene=F1RIX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42760", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42760", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42760:SF133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42760:SF133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-75105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17397", "url": "https://www.rhea-db.org/rhea/17397", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46164", "url": "https://www.rhea-db.org/rhea/46164", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QL25", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4K8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIX8-1", "url": "https://www.uniprot.org/uniprotkb/F1RIX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDLGGDHLALSCDVAKEQDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTMIKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFVHTDMTKDLKEEHLKSNIPLGRFGDPLDVAHAVLFLLESPYITGHALVVDGGLQLTM", "length": 237, "header": "tr|F1RIX8-1|F1RIX8_PIG Isoform 1 of 3-oxoacyl-[acyl-carrier-protein] reductase OS=Sus scrofa OX=9823 GN=CBR4 PE=1 SV=3 CANONICAL=F1RIX8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL25-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL25/entry", "sequence": { "sequence": "MDRVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDLGGDHLALSCDVAKEQDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTMIKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPDSLEITEKCREESKHHMYFLRLMIITGFVHTDMTKDLKEEHLKSNIPLGRFGDPLDVAHAVLFLLESPYITGHALVVDGGLQLTM", "length": 263, "header": "tr|A0A5G2QL25-1|A0A5G2QL25_PIG Computationally mapped isoform of 3-ketoacyl-[acyl-carrier-protein] reductase beta subunit OS=Sus scrofa OX=9823 GN=CBR4 PE=1 SV=1 CANONICAL=F1RIX8-1" }, "locus": { "chromosome": "14", "start_pos": 20640815, "end_pos": 20622105, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082083.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082083.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065525.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065525.1" } ] } }, { "isoform_ac": "A0A5G2R4K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K8/entry", "sequence": { "sequence": "MDRVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDLGGDHLALSCDVAKEQDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTMIKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPEDLWWRCPRHPALQAHRVSVGHTRVLQLLQKHGGLVCLLSCGNKRP", "length": 224, "header": "tr|A0A5G2R4K8-1|F1RIX8_PIG Computationally mapped isoform of 3-oxoacyl-[acyl-carrier-protein] reductase OS=Sus scrofa OX=9823 GN=CBR4 PE=1 SV=1 CANONICAL=F1RIX8-1" }, "locus": { "chromosome": "14", "start_pos": 20682229, "end_pos": 20622105, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084941.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084941.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069120.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069120.1" } ] } }, { "isoform_ac": "F1RIX8-1", "url": "https://www.uniprot.org/uniprotkb/F1RIX8/entry", "sequence": { "sequence": "MDRVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDLGGDHLALSCDVAKEQDVQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTMIKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFVHTDMTKDLKEEHLKSNIPLGRFGDPLDVAHAVLFLLESPYITGHALVVDGGLQLTM", "length": 237, "header": "tr|F1RIX8-1|F1RIX8_PIG Isoform 1 of 3-oxoacyl-[acyl-carrier-protein] reductase OS=Sus scrofa OX=9823 GN=CBR4 PE=1 SV=3 CANONICAL=F1RIX8-1" }, "locus": { "chromosome": "14", "start_pos": 20640815, "end_pos": 20622105, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010653.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010653.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010376.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010376.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4K8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153608", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153608", "resource": "KEGG Pathway" }, { "id": "R-SSC-75105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75105", "resource": "Reactome", "description": "Fatty acyl-CoA biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XXB7-1", "protein_name": "3-ketoacyl-[acyl-carrier-protein] reductase beta subunit", "gene_name": "CBR4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGKICAVFGGSRGIGKAVAELLARKGCHLAIIARNLEVAQNTARSLGAGHLALSCDVSREQEVQHAFEEIQRNLGPINYLVNAAGINRDGLLLRTKTEDIVSQIHTNLLGTMLTCKAAVKSMIHHQGGAIVNIGSVVGLKGNSGQSIYSASKAGIVGFSRSLAKEVARKQIRVNVVAPGFIHTEMTAHLEEDELKKAIPLGRFGDPHEVAQAVLFLLESPYVTGSTLIVDGGLQLLI", "length": 237 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4IFA7-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "CBR4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDKVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLEGARAAAGDLGGDHLALSCDVAKEHDVQNTFEEIEKNLGRVNFLVNAAGINRDNLLVRTNTEDMLSQLHTNLLGSMLTCRAALKTMIKQQRGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDMTKDLNEELLKKNIPLGRFGDALDVAQAAVFLLESPYVTGHVLVVDGGLQLTM", "length": 237 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H3B9-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "Cbr4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDKVGAVFGGSRGIGRAVAQLMAQKGYRLAIVARNLQVAKAAAGELGGNHLAFSCDVAKEQDVQNTFEEMEKHLGPVNFLVNAAGINRDGLLVRTKTEDMISQLHTNLLGSMLTCKAAMRTMIQRGGSIVNVGSIIGLKGNVGQSVYCASKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDMTKHLKEEHLKKNIPLGRFGEALEVAHAVVFLLESPYVTGHVLVVDGGLQLTI", "length": 236 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6P0H7-1", "protein_name": "Carbonyl reductase family member 4", "gene_name": "cbr4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSRLAVVFGGSRGIGRAASKLLAQRGHRIVLLSRNKEAAQSTAQSLPGENHLGLSCDVSKEEEVQKAFETINKTCGTVGFLVNAAGINRDALLLRSKSEDMLSVLHTNLLGSMLTCKAAVRNMLSHGGAIVNIGSVVGVKGNAGQCVYSASKAGLEGFTRSLAKEVASRNIRVNLVAPGLIHTDMTAGLAEEAAVRTIPLGRFGEPAEVAQAMLFLLESPYITGQILLVDGGLQLLM", "length": 237 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7TS56-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "Cbr4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKVCAVFGGSRGIGKAVAQLMAQKGYRLAIVARNLEVAKATASELGGIHLAFRCNIAKEGDVHSTFEEMEKHLGPVNFLVNAAGINRDSLLVRTKTEDMLSQLHTNLLGTMLTCRAAMRTMIQQGGSIVNVGSIIGLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDMTKHLKEEHFKKNIPLGRFGEALEVAHAVVFLLESPYITGHVLIVDGGLQLTA", "length": 236 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N4T8-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "CBR4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARNLEGAKAAAGDLGGDHLAFSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKEEHLKKNIPLGRFGETIEVAHAVVFLLESPYITGHVLVVDGGLQLIL", "length": 237 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91VT4-1", "protein_name": "3-oxoacyl-[acyl-carrier-protein] reductase", "gene_name": "Cbr4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDKVCAVFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGELGGNHLAFRCDVAKEQDVQSTFQEMEKHLGPVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTCKAAMKTMIQQGGSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKEEHFKKNIPLGRFGETLEVAHAVVFLLESPYITGHVLIVDGGLQLTV", "length": 236 }, "evidence": [ { "id": "F1RIX8", "url": "https://omabrowser.org/oma/group/F1RIX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "fatty acid biosynthetic process", "id": "GO:0006633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006633", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "protein homotetramerization", "id": "GO:0051289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051289", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "protein heterotetramerization", "id": "GO:0051290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051290", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "daunorubicin metabolic process", "id": "GO:0044597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044597", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "doxorubicin metabolic process", "id": "GO:0044598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044598", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "quinone binding", "id": "GO:0048038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048038", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "NADPH dehydrogenase (quinone) activity", "id": "GO:0008753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008753", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity", "id": "GO:0004316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004316", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "NADPH binding", "id": "GO:0070402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070402", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" }, { "name": "oxidoreductase complex", "id": "GO:1990204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990204", "evidence": [ { "database": "UniProtKB", "id": "F1RIX8", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17397", "name": "", "equation": "a (3R)-hydroxyacyl-[ACP] + NADP(+) = a 3-oxoacyl-[ACP] + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17397", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17397" } ] }, { "id": "46164", "name": "", "equation": "a quinone + NADPH + H(+) = a quinol + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46164", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46164" } ] }, { "id": "R-SSC-8862152", "name": "2xHSD17B8:2xCBR4 reduces 3OA-ACP to 3HA-ACP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-8862377" ], "output_participant_list": [ "R-ALL-8862371" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8862152", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8862152" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-8862371", "participant_name": "3HA-ACP [mitochondrial matrix]", "crossref": [ { "id": "78827", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-8862377", "participant_name": "3OA-ACP [mitochondrial matrix]", "crossref": [ { "id": "78776", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIX8" }, { "id": "SM00822", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00822" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ketoreductase", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 212, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FPX3-1", "uniprot_ac": "A0A8W4FPX3", "uniprot_id": "A0A8W4FPX3_PIG", "mass": { "chemical_mass": 23836.0, "monoisotopic_mass": 23836.0 }, "refseq": { "ac": "NP_998987", "name": "glycolipid transfer protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_998987" }, "gene_names": [ { "name": "GLTP", "type": "recommended", "evidence": [ { "id": "A0A8W4FPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ] }, { "name": "GLTP", "type": "synonym", "evidence": [ { "id": "NP_998987", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_998987" } ] } ], "protein_names": [ { "name": "Glycolipid transfer protein", "type": "recommended", "evidence": [ { "id": "A0A8W4FPX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3/entry#names_and_taxonomy" } ] }, { "name": "glycolipid transfer protein", "type": "synonym", "evidence": [ { "id": "NP_998987", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_998987" } ] } ], "function": [ { "annotation": "Accelerates the intermembrane transfer of various glycolipids. Catalyzes the transfer of various glycosphingolipids between membranes but does not catalyze the transfer of phospholipids. May be involved in the intracellular translocation of glucosylceramides.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLH2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH2#function" }, { "database": "UniProtKB", "id": "ARBA00037246", "url": "https://www.uniprot.org/uniprotkb/ARBA00037246#function" }, { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLTP", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3", "locus": { "chromosome": "14", "start_pos": 41115964, "end_pos": 41091628, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000039012", "url": "https://www.ensembl.org/id/ENSSSCG00000039012" } ] } } ], "crossref": [ { "id": "A0A8W4FPX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FPX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "396765", "url": "https://www.ncbi.nlm.nih.gov/gene/396765", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR014830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EMHGAEW", "url": "https://omabrowser.org/oma/group/EMHGAEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FPX3", "url": "https://www.orthodb.org/?gene=A0A8W4FPX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10219:SF97", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10219:SF97", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08718", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08718", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9845576", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845576", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_998987", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_998987", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLH2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTKMNAELNYKV", "length": 209, "header": "tr|A0A8W4FPX3-1|A0A8W4FPX3_PIG Isoform 1 of Glycolipid transfer protein OS=Sus scrofa OX=9823 GN=GLTP PE=1 SV=1 CANONICAL=A0A8W4FPX3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH2/entry", "sequence": { "sequence": "MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTKMNAELNYKGQLFQPKKLPTMCILSRGRG", "length": 228, "header": "tr|A0A286ZLH2-1|A0A8W4FPX3_PIG Computationally mapped isoform of Glycolipid transfer protein OS=Sus scrofa OX=9823 GN=GLTP PE=1 SV=1 CANONICAL=A0A8W4FPX3-1" }, "locus": { "chromosome": "14", "start_pos": 41115772, "end_pos": 41091795, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079433.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079433.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065096.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065096.2" } ] } }, { "isoform_ac": "A0A8W4FPX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3/entry", "sequence": { "sequence": "MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKVRLFLVNYTATIDVIYEMYTKMNAELNYKV", "length": 209, "header": "tr|A0A8W4FPX3-1|A0A8W4FPX3_PIG Isoform 1 of Glycolipid transfer protein OS=Sus scrofa OX=9823 GN=GLTP PE=1 SV=1 CANONICAL=A0A8W4FPX3-1" }, "locus": { "chromosome": "14", "start_pos": 41114957, "end_pos": 41091795, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106401.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106401.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081258.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081258.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLH2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9845576", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845576", "resource": "Reactome", "description": "Glycosphingolipid transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A2BG43-1", "protein_name": "Glycolipid transfer protein", "gene_name": "gltp", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MALLMEHQFRQLPADKQVETRPFLEAVSHLPPFFDCLGSAVFSPIKADIAGNITKIKAVYDSNPTRFKTLQQILEAEKEMHGAEWPKVGATLALMWLKRGLRFIQVLLQSLVDGDKDDNNPNLIKVNVTKAYEMALKKYHGWIVQKLFQAALYAAPYRSDFLRALSKGREVKDEECLDKVRQFLVNFTATNDAIYEMYTKMNADLDYKV", "length": 209 }, "evidence": [ { "id": "A0A8W4FPX3", "url": "https://omabrowser.org/oma/group/A0A8W4FPX3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0BNM9-1", "protein_name": "Glycolipid transfer protein", "gene_name": "GLTP", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLAEHLLKPLPADRQIETGPFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMYGAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNANKAYEMALKKYHGWLVQKIFKAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDAIYEMYTKMNAELDYTV", "length": 209 }, "evidence": [ { "id": "A0A8W4FPX3", "url": "https://omabrowser.org/oma/group/A0A8W4FPX3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O22797-1", "protein_name": "Glycolipid transfer protein 1", "gene_name": "GLTP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEGTVFTPCLEGMKHVKSDQGEMLTKPFLELCKTILPVIDKFGAAMTLVKSDIGGNITRLEKNYLSDPDKFKYLYTFVQVEIESKIAKGSSSCTNGLLWLTRAMDFLVELFRNLVAHQDWSMPQACADSYQKTLKKWHGWLASSTFSMALKLAPDRKKFMDVISGSGNIQADMERFCAEFGPFLHDNHKFLASVGMDDMKAS", "length": 202 }, "evidence": [ { "id": "A0A8W4FPX3", "url": "https://omabrowser.org/oma/group/A0A8W4FPX3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JL62-1", "protein_name": "Glycolipid transfer protein", "gene_name": "Gltp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALLAEHLLKPLPADRQIETGPFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMYGAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNANKAYEMALKKYHGWLVQKIFKAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDAIYDMYTKMNAELDYTV", "length": 209 }, "evidence": [ { "id": "A0A8W4FPX3", "url": "https://omabrowser.org/oma/group/A0A8W4FPX3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZD2-1", "protein_name": "Glycolipid transfer protein", "gene_name": "GLTP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV", "length": 209 }, "evidence": [ { "id": "A0A8W4FPX3", "url": "https://omabrowser.org/oma/group/A0A8W4FPX3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "glycolipid transfer activity", "id": "GO:0017089", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017089", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "glycolipid binding", "id": "GO:0051861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051861", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "lipid sensor activity", "id": "GO:0106254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106254", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "ceramide 1-phosphate binding", "id": "GO:1902387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902387", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "ceramide 1-phosphate transfer activity", "id": "GO:1902388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902388", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of glucosylceramide biosynthetic process", "id": "GO:0046317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046317", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "ceramide transport", "id": "GO:0035627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035627", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" }, { "name": "intermembrane lipid transfer", "id": "GO:0120009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120009", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 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"expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EGR3", "url": "https://www.uniprot.org/uniprotkb/F1RMA1", "locus": { "chromosome": "14", "start_pos": 6944935, "end_pos": 6948580, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009630", "url": "https://www.ensembl.org/id/ENSSSCG00000009630" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009630", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009630", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516296", "url": "https://www.ncbi.nlm.nih.gov/gene/100516296", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GEVEPMY", "url": "https://omabrowser.org/oma/group/GEVEPMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11928", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11928", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020928654", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928654", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BAL9", "url": "https://www.uniprot.org/uniprotkb/A0A287BAL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMA1-1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPCAAWSPRGGRENVMDIGLTNEKPNPELSYSGSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGEVEAMYPALPPYSNCSDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKAEKGGAPSASSAAPVSLAPVVTTCA", "length": 349, "header": "tr|F1RMA1-1|F1RMA1_PIG Isoform 1 of Early growth response protein 3 OS=Sus scrofa OX=9823 GN=EGR3 PE=3 SV=2 CANONICAL=F1RMA1-1" }, "isoforms": [ { "isoform_ac": "A0A287BAL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAL9/entry", "sequence": { "sequence": "MTGKLAEKLPVTMSSLLNQLPDNLYPEEIPSALNLFSGSTDSVAHYNQMATENVMDIGLTNEKPNPELSYSGSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGEVEAMYPALPPYSNCSDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKAEKGGAPSASSAAPVSLAPVVTTCA", "length": 387, "header": "tr|A0A287BAL9-1|F1RMA1_PIG Computationally mapped isoform of Early growth response protein 3 OS=Sus scrofa OX=9823 GN=EGR3 PE=3 SV=1 CANONICAL=F1RMA1-1" }, "locus": { "chromosome": "14", "start_pos": 6948381, "end_pos": 6945939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038602.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038602.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053390.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053390.1" } ] } }, { "isoform_ac": "F1RMA1-1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1/entry", "sequence": { "sequence": "MEPCAAWSPRGGRENVMDIGLTNEKPNPELSYSGSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGEVEAMYPALPPYSNCSDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKAEKGGAPSASSAAPVSLAPVVTTCA", "length": 349, "header": "tr|F1RMA1-1|F1RMA1_PIG Isoform 1 of Early growth response protein 3 OS=Sus scrofa OX=9823 GN=EGR3 PE=3 SV=2 CANONICAL=F1RMA1-1" }, "locus": { "chromosome": "14", "start_pos": 6947820, "end_pos": 6945939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083638.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083638.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063467.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063467.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BAL9", "url": "https://www.uniprot.org/uniprotkb/A0A287BAL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T7E2-1", "protein_name": "Early growth response protein 3", "gene_name": "EGR3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPCAAWSPRGGRENVMDIGLTNEKPNPELSYSGSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGDVEAMYPALPPYSNCSDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSMPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKAEKGGAPSASSAAPVSLAPVVTTCA", "length": 349 }, "evidence": [ { "id": "F1RMA1", "url": "https://omabrowser.org/oma/group/F1RMA1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P43300-1", "protein_name": "Early growth response protein 3", "gene_name": "Egr3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGKLAEKLPVTMSSLLNQLPDNLYPEEIPSALNLFSGSSDSVAHYNQMATENVMDIGLTNEKPNPELSYSSSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGDVEAMYPALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKSEKGGAPSASSAPTVSLAPVVTTCA", "length": 387 }, "evidence": [ { "id": "F1RMA1", "url": "https://omabrowser.org/oma/group/F1RMA1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P43301-1", "protein_name": "Early growth response protein 3", "gene_name": "Egr3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTGKLAEKLPVTMSSLLNQLPDNLYPEEIPSALNLFSGSSDSVAHYTQMATENVMDIGLTNEKPNPELSYSGSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTTTASMVQPPQGDVEAMYPALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKSEKGGAPSASSAPTVSLAPVVTTCA", "length": 387 }, "evidence": [ { "id": "F1RMA1", "url": "https://omabrowser.org/oma/group/F1RMA1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q06889-1", "protein_name": "Early growth response protein 3", "gene_name": "EGR3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTGKLAEKLPVTMSSLLNQLPDNLYPEEIPSALNLFSGSSDSVVHYNQMATENVMDIGLTNEKPNPELSYSGSFQPAPGNKTVTYLGKFAFDSPSNWCQDNIISLMSAGILGVPPASGALSTQTSTASMVQPPQGDVEAMYPALPPYSNCGDLYSEPVSFHDPQGNPGLAYSPQDYQSAKPALDSNLFPMIPDYNLYHHPNDMGSIPEHKPFQGMDPIRVNPPPITPLETIKAFKDKQIHPGFGSLPQPPLTLKPIRPRKYPNRPSKTPLHERPHACPAEGCDRRFSRSDELTRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFACEFCGRKFARSDERKRHAKIHLKQKEKKAEKGGAPSASSAPPVSLAPVVTTCA", "length": 387 }, "evidence": [ { "id": "F1RMA1", "url": "https://omabrowser.org/oma/group/F1RMA1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" }, { "name": "positive regulation of endothelial cell 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"pmid": "" }, { "name": "cell migration involved in sprouting angiogenesis", "id": "GO:0002042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002042", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" }, { "name": "system development", "id": "GO:0048731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048731", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RMA1", "url": "https://www.uniprot.org/uniprotkb/F1RMA1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": 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"https://www.ebi.ac.uk/interpro/entry/IPR053880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YTWSGCA", "url": "https://omabrowser.org/oma/group/YTWSGCA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23252:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23252:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10192", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10192", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950086", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950086", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4F9B8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9B8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGI0", "url": "https://www.uniprot.org/uniprotkb/F1RGI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGI0-1", "url": "https://www.uniprot.org/uniprotkb/F1RGI0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGK1", "url": "https://www.uniprot.org/uniprotkb/F1RGK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGK1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPRAPALRRLLPSLLLLLLPLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSVRERWWYIALSKCGGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESLKIVAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHSGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIASAGAPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPASSAGKQVEETAVAAAAPRGRVVTMAEPGAASPPPPSRFPKAVDPIWDGPTPPYQPLVPQTAAPHTGFTEYFSMHTAGGNAPPV", "length": 562, "header": "tr|F1RGI0-1|F1RGI0_PIG Isoform 1 of Transmembrane protein 145 OS=Sus scrofa OX=9823 GN=TMEM145 PE=4 SV=3 CANONICAL=F1RGI0-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F9B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9B8/entry", "sequence": { "sequence": "MEPPRAPALRRLLPSLLLLLLPLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESLKIVAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHSGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIASAGAPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPASSVSPAPPAPEELLAPPLEYLTPLPAPPPPSIPRRLSPPPAFRTPRAPTPRRDRSPAPAPTLPDWVLALLRTPPQTPRAVPPPPAFRGSPYPPRPPPEFAHRTPTPPLEYLAPLPRRPD", "length": 584, "header": "tr|A0A8W4F9B8-1|F1RGI0_PIG Computationally mapped isoform of Transmembrane protein 145 OS=Sus scrofa OX=9823 GN=TMEM145 PE=4 SV=1 CANONICAL=F1RGI0-1" }, "locus": { "chromosome": "6", "start_pos": 49627996, "end_pos": 49620426, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099885.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099885.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075989.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075989.1" } ] } }, { "isoform_ac": "F1RGI0-1", "url": "https://www.uniprot.org/uniprotkb/F1RGI0/entry", "sequence": { "sequence": "MEPPRAPALRRLLPSLLLLLLPLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSVRERWWYIALSKCGGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESLKIVAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHSGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIASAGAPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPASSAGKQVEETAVAAAAPRGRVVTMAEPGAASPPPPSRFPKAVDPIWDGPTPPYQPLVPQTAAPHTGFTEYFSMHTAGGNAPPV", "length": 562, "header": "tr|F1RGI0-1|F1RGI0_PIG Isoform 1 of Transmembrane protein 145 OS=Sus scrofa OX=9823 GN=TMEM145 PE=4 SV=3 CANONICAL=F1RGI0-1" }, "locus": { "chromosome": "6", "start_pos": 49627996, "end_pos": 49620066, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003369.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003369.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003286.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003286.3" } ] } }, { "isoform_ac": "F1RGK1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGK1/entry", "sequence": { "sequence": "MEPPRAPALRRLLPSLLLLLLPLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSVRERWWYIALSKCGGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESLKIVAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHSGSVKLSVYMTLYTLTHVVLLIYEAEVLCSSSHGPDCQLWDPKVGPGEDRQWHSAGDPFVCPWRVPDHDTPFGGQQELPVPRAHVADRLSRSPGPGREPISRQGLPAARLWERDVHQRLGAQLHGALLHPPARLLCKPRAPGARGAAGAAPGVPDPAPGPSTTLHTPAPEPTPCFSHPPRPNAAPRPFPGACAHPAGLGPGAVAHAPSDAPRGAPAAGLPRFSLPSPAAAGVRPPHPDAAP", "length": 529, "header": "tr|F1RGK1-1|F1RGK1_PIG Computationally mapped isoform of Transmembrane protein 145 OS=Sus scrofa OX=9823 GN=TMEM145 PE=4 SV=3 CANONICAL=F1RGI0-1" }, "locus": { "chromosome": "6", "start_pos": 49627996, "end_pos": 49620461, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003356.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003356.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003273.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003273.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 529, "start_aa": "Thr", "end_pos": 529, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr529", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F9B8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9B8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3Z9I0-1", "protein_name": "Transmembrane protein 145", "gene_name": "Tmem145", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSRAPALRRLLPPLLLLLLPLYPRTRAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKARDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSVRERWWYIALSKCGGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFTLIFVLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNDSVKILAKLLFSSSFLIFLLTLILLGKGFTVTRGRISHSGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHYPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIASAGVPAPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPTSSAGKQVEETAVAAAVPPRGRVVTMAEPGAASPPPPARFPKAVDSGWDGPTPSYQPLVPQTAAPHTGFTEYFSMHTAGGPAPPV", "length": 563 }, "evidence": [ { "id": "F1RGI0", "url": "https://omabrowser.org/oma/group/F1RGI0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54MH1-1", "protein_name": "GPR180/TMEM145 transmembrane domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNFKILKIILLLLSCCTFFSVVNSITVGGLYSTPGKWKFITKFCFQDQGGHVIMKLFHSLSKDTKILLYSDKNPNYNELLDDIYGNKYSCEQKVSWNNYEFSPFVNNPNDLDWESRMQVKSVMQQRDRFWIVAIADCERGNRSTGGGTGSNVNKKYFAEYVFSLSNNGDHIDSVLSADQQSIPQSQMFYFLLYIIMFVITIVFIIILKKKQLESKVLQFFIVILGVQLISLVLFLANWSTIIKYDGPELKYANLFGNIFSILANSLFVLLILMVGQGWTTSLYYGSMIKRMVNLSVSGLLFVFGVIVYIFVCFKAPEFNNYIYFYDTYPGYALLAIYVFIIFFFTIGNTLSRRKQNDEMKKKFILIFTIIFTLWFIAQPMIVVCAHFTEPWVKFKVISILYQTINAIFYIVLLILFRPTKNNIVVKILESDDKFGLEIKDYPSPKENSFKNEKVKNKKFVAF", "length": 463 }, "evidence": [ { "id": "F1RGI0", "url": "https://omabrowser.org/oma/group/F1RGI0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8C4U2-1", "protein_name": "Transmembrane protein 145", "gene_name": "Tmem145", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSRAPVLGRLLPPLLLLLLPLYPRTRAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKARDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSVRERWWYIALSKCGGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFTLIFVLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNGSVKILAKLLFSSSFLIFLLTLILLGKGFTVTRGRISHSGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHYPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPTSSAGKQVEETAVAAAVAPRGRVVTMAEPGAASPPPPARFSKAVHSGWDGPTPSYQPLVPPEQRRGKPASPNTSACTQPGALHPRSEHPFPASAPRAAHRAPAGLRNPVSLPAQGLGHARHPAPLPHPAPTLDALRPAPFPLVPNGPAGAVLRVPSLSPCPEWLRNLDSRCSVISAPLTPFETSDPAGLRNTRDDRLDPARPSRTLRPSSHCLETDIVKLVSTLKPSLGFVTSDLCFVRPSECQGPSHGLWQKDVFSSCQNKEDSLSF", "length": 746 }, "evidence": [ { "id": "F1RGI0", "url": "https://omabrowser.org/oma/group/F1RGI0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NBT3-1", "protein_name": "Transmembrane protein 145", "gene_name": "TMEM145", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPLRAPALRRLLPPLLLLLLSLPPRARAKYVRGNLSSKEDWVFLTRFCFLSDYGRLDFRFRYPEAKCCQNILLYFDDPSQWPAVYKAGDKDCLAKESVIRPENNQVINLTTQYAWSGCQVVSEEGTRYLSCSSGRSFRSGDGLQLEYEMVLTNGKSFWTRHFSADEFGILETDVTFLLIFILIFFLSCYFGYLLKGRQLLHTTYKMFMAAAGVEVLSLLFFCIYWGQYATDGIGNESVKILAKLLFSSSFLIFLLMLILLGKGFTVTRGRISHAGSVKLSVYMTLYTLTHVVLLIYEAEFFDPGQVLYTYESPAGYGLIGLQVAAYVWFCYAVLVSLRHFPEKQPFYVPFFAAYTLWFFAVPVMALIANFGIPKWAREKIVNGIQLGIHLYAHGVFLIMTRPSAANKNFPYHVRTSQIASAGVPGPGGSQSADKAFPQHVYGNVTFISDSVPNFTELFSIPPPATSPLPRAAPDSGLPLFRDLRPPGPLRDL", "length": 493 }, "evidence": [ { "id": "F1RGI0", "url": "https://omabrowser.org/oma/group/F1RGI0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1RGI0", "url": "https://www.uniprot.org/uniprotkb/F1RGI0" } ], "pmid": "" }, { "name": "response to pheromone", "id": "GO:0019236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019236", "evidence": [ { "database": "UniProtKB", "id": "F1RGI0", "url": "https://www.uniprot.org/uniprotkb/F1RGI0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RGI0", "url": "https://www.uniprot.org/uniprotkb/F1RGI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGI0" }, { "id": "PF21892", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21892" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GPR180-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 162, "start_aa": "Val", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RGI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGI0" }, { "id": "PF10192", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GPR180/TMEM145 transmembrane", "eco_id": "ECO_0000259", "start_pos": 191, "end_pos": 411, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 529 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 468, "end_pos": 470 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJ15-1", "uniprot_ac": "F1RJ15", "uniprot_id": "F1RJ15_PIG", "mass": { "chemical_mass": 168305.0, "monoisotopic_mass": 168305.0 }, "refseq": {}, "gene_names": [ { "name": "SYCP2", "type": "recommended", "evidence": [ { "id": "F1RJ15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ15" } ] } ], "protein_names": [ { "name": "Synaptonemal complex protein 2", "type": "synonym", "evidence": [ { "id": "F1RJ15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ15/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJ15", "url": "https://www.uniprot.org/uniprotkb/F1RJ15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYCP2", "url": "https://www.uniprot.org/uniprotkb/F1RJ15", "locus": { "chromosome": "17", "start_pos": 59875993, "end_pos": 59955209, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007529", "url": "https://www.ensembl.org/id/ENSSSCG00000007529" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007529", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007529", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15607", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15607", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15607:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15607:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FKM8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNS3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPQ7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ15", "url": "https://www.uniprot.org/uniprotkb/F1RJ15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ15-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VPLSIFLQHLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKLDDLMCRELNKKDIQTVSTILVSFGRCGKNISILGQAGLLTMIKQVTNVYISFFYMVAWFEKSKEIILSQGSSKDEAVINMIEDFFDLLMVTVTQVVESFIPRICALVIDSRVNICVQQETLKKMNAMLDKMPQDARKILFNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELACQWFSMDFVANAFKGIKDSEFETDCRMFLNLVNGILGDKRRVFTFPCLSAFLDKYELQIPSDEKLEDFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRDSKKLLTIILKDTVKISKRKGKELLLYFDASLEITNVTQKIFGANKYREFSRKQGISVAKTSVHILFDASGSQILVPESQISPVEELSTLKEKANPQEEFVKPPKHIKNSNKGDRKHGQPEIITPSKRKMSEASMIVPGAERYTVRSPILLINTSTPQRGRIKPPLQMTSSMEKPGFSKTSENGVDNAVSLKSRPCEERNREDNTDKHIKTKVIEKAENKDIEYPNQNFSKYFLQMNLFSRLPGILDNICGNKMHSKWACWTPVTNIKLCNNLRASSSSEDTFNQDIIINKNLTKKKSSSSMSDDNSEETSKVQYGKELMQHNKIDKAEAEACKRNKQQQLDHSKHSEEKNTENTKQNDWRIESETTFKSVLLNKTVEESVIYRKKYTLSKDVNTAICDKSPSPRKNTKSHRKSGKRLTSELNSWDLKQKEMREKSKGKGFNDAAESLISQINKRYKPKDGTKSTRKLKESLIDSGFSNKSDLQLRKEKVQKKSYRQLKTTFVNVTSECPLNDVYNFNLSGADEPVIKLGVIIEIKMNAYFCSRVGLRNHDELETSLKTKDKRTVTNHKKKTLFSDTDTEYKCDDSKTDISWLRESKSKPQLIGYSRNKNVKKHKSGKSRSSLEREQPRSKMTPDKNITKKVDETVPDGRIRLPRRAAKTKKNYKDLSNSESESEQEFSHSFKEKLLIKENIHSRSKTMKPPKKQNSFSSEMQKDISKEWKNSSLLKDTIRDNSLDKSPVSLSGSPSSIEVMRCTEKTTERDFTQDFDYVTKSLSPYPKTSSPESLNSGVESPINSPNNSEKNLLCGGESCSPIPQSGFLVRKKTMYVYFLHFSVPVLILHDESHSASPLSMASEGREKIWGGLPCDSTHGSGPTLHVSRKRMYIEKDLSNSDEVALGEREEERASLLPKKLSKSEGTDFQTYKVSESISPLSTNDFSIPGENWGNEMSDVGMMYEQLNTEFRRKVHIRHKIMDYFTKHSWKTAQQHIKTMNHQIQEYRIKKLDKFQFIIIKELENFEKDSQSLKDLEKELVGFWEKIFQKFSAYQKTKLYIIHMLHLLKASLNKNVFYNTDYEETIFTSEMCSMKENMKMIQDRLLKEMVNLKILKLARRMIYLYVS", "length": 1462, "header": "tr|F1RJ15-1|F1RJ15_PIG Isoform 1 of Synaptonemal complex protein 2 OS=Sus scrofa OX=9823 GN=SYCP2 PE=3 SV=4 CANONICAL=F1RJ15-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FKM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM8/entry", "sequence": { "sequence": "VPLSIFLQHLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKLDDLMCRELNKKDIQTVSTILVSFGRCGKNISILGQAGLLTMIKQGLVQKISIEREIILSQGSSKDEAVINMIEDFFDLLMVIHDIDDEGKRQVVESFIPRICALVIDSRVNICVQQETLKKMNAMLDKMPQDARKILFNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELACQWFSMDFVANAFKGIKDSEFETDCRMFLNLVNGILGDKRRVFTFPCLSAFLDKYELQIPSDEKLEDFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRDSKKLLTIILKDTVKISKRKGKELLLYFDASLEITNVTQKIFGANKYREFSRKQGISVAKTSVHILFDASGSQILVPESQISPVEELSTLKEKANPQEEFVKPPKHIKNSNKGDRKHGQPEIITPSKRKMSEASMIVPGAERYTVRSPILLINTSTPQRGRIKPPLQMTSSMEKPGFSKTSENGVDNAVSLKSRPCEERNREDNTDKEIVPDSQAVGKIDKPVLPGILDNICGNKMHSKWACWTPVTNIKLCNNLRASSSSEDTFNQDIIINKNLTKKKSSSSMSDDNSEETSKVQYGKELMQHNKIDKAEAEACKRNKQQQLDHSKHSEEKNTENTKQNDWRIESETTFKSVLLNKTVEESVIYRKKYTLSKDVNTAICDKSPSPRKNTKSHRKSGKRLTFYVTCKLFQREKSKGKGFNDAAESLISQINKRYKPKDGTKSTRKLKESLIDSGFSNKSDLQLRKVGFIYLTTPDVNDVYNFNLSGADEPVIKLGVIIEIKMNAYFCSRVGLRNHDELETSLKTKDKRTVTNHKKKTLFSDTDTEYKCDDSKTDISWLRESKSKPQLIGYSRNKNVKKHKSGKSRIFLLKTPDKNITKKVDETVPDGRIRLPRRAAKTKKNYKDLSNSESESEQEFSHSFKEKLLIKENIHSRSKTMKPPKKQNSFSSEMQKDISKEWKNSSLLKDTIRDNSLDKSPVSLSGSPSSIEVMRCTEKTTERDFTQDFDYVTKSLSPYPKTSSPESLNSGVESPINSPNNSEKNLLCGGESCSPIPQSGFLVRKKTMYVYFLHFSVPVLILHDVFIFKLTMTLGTIFFKLKMSIFQIRHKIMDYFTKHSWKTAQQHIKTMNHQIQEIKKLDKFQFIIIKELENFEKDSQSLKDLEKELVVCAFKSLKMRLHLLKASLNKNVFYNTDYEETIFTSEMCSMKENMKMIQDRLLKEMVSQLSSLDFSNGIISHAFTYLNGNFFHRLFFFLCFRIQRRQF", "length": 1325, "header": "tr|A0A8W4FKM8-1|F1RJ15_PIG Computationally mapped isoform of Synaptonemal complex protein 2 OS=Sus scrofa OX=9823 GN=SYCP2 PE=3 SV=1 CANONICAL=F1RJ15-1" }, "locus": { "chromosome": "17", "start_pos": 59955209, "end_pos": 59877892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096093.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096093.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079462.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079462.1" } ] } }, { "isoform_ac": "A0A8W4FNS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNS3/entry", "sequence": { "sequence": "VPLSIFLQHLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKLDDLMCRELNKKDIQTVSTILVSFGRCGKNISILGQAGLLTMIKQGLVQKISIEREIILSQGSSKDEAVINMIEDFFDLLMVIHDIDDEGKRQVVESFIPRICALVIDSRVNICVQQETLKKMNAMLDKMPQDARKILFNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELACQWFSMDFVANAFKGIKDSEFETDCRMFLNLVNGILGDKRRVFTFPCLSAFLDKYELQIPSDEKLEDFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRDSKKLLTIILKDTVKISKRKGKELLLYFDASLEITNVTQKIFGANKYREFSRKQGISVAKTSVHILFDASGSQILVPESQISPVEELSTLKEKKIYVYCGFSSWFKIITPSKRKMSEASMIVPGAERYTVRSPILLINTSTPQRGRIKPPLQMTSSMEKPGFSKTSENGVDNAVSLKSRPCEERNREDNTDKQMNLFSRLPGILDNICGNKMHSKWACWTPVTNIKLCNNLRASSSSEDTFNQDIIINKNLTKKKSSSSMSDDNSEETSKVQYGKELMQHNKIDKAEAEACKRNKQQQLDHSKHSEEKNTENTKQNDWRIESETTFKSVLLNKTVEESVIYRKKYTLSKDVNTAICDKSPSPRKNTKSHRKSGKRLTSELNSWDLKQKEMREKSKGKGFNDAAESLISQINKRYKPKDGTKSTRKLKESLIDSGFSNKSDLQLRKVQKKSYRQLKTTFVNVTSECPLNDVYNFNLSGADEPVIKLGIQEFQATAREACTVTNHKKKTLFSDTDTEYKCDDSKTDISWLRESKSKPQLIGYSRNKNVKKHKSGKSRIFLLKTPDKNITKKVDETVPDGRIRLPRRAAKTKKNYKDLSNSESESEQEFSHSFKEKLLIKENIHSRSKTMKPPKKQNSFSSEMQKDISKEWKNSSLLKDTIRDNSLDKSPVSLSGSPSSIEVMRCTEKTTERDFTQDFDYVTKSLSPYPKTSSPESLNSGVESPINSPNNSEKNLLCGGESCSPIPQSGFLVRKKTMYVYFLHFSVPVLILHDVFIFKLTMTLGTVRKRMYIEKDLSNSDEVALGEREEERASLLPKKLSKSEGTDFQTYKDYYFVKIFFKLKMSIFQIRHKIMDYFTKHSWKTAQQHIKTMNHQIQEIKKLDKFQFIIIKELENFEKDSQSLKDLEKELVVCAFKSLKMRLHLLKASLNKNVFYNTDYEETIFTSEMCSMKENMKMIQDRLLKEMVSQLSSLDFSNGIISHAFTYLNGNFFHRLFFFLCFRIQRRQF", "length": 1347, "header": "tr|A0A8W4FNS3-1|F1RJ15_PIG Computationally mapped isoform of Synaptonemal complex protein 2 OS=Sus scrofa OX=9823 GN=SYCP2 PE=3 SV=1 CANONICAL=F1RJ15-1" }, "locus": { "chromosome": "17", "start_pos": 59955209, "end_pos": 59877892, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096419.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096419.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080565.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080565.1" } ] } }, { "isoform_ac": "A0A8W4FPQ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPQ7/entry", "sequence": { "sequence": "VPLSIFLQHLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKLDDLMCRELNKKDIQTVSTILVSFGRCGKNISILGQAGLLTMIKQVTNVYISFFYMVAWFEKSKEIILSQGSSKDEAVINMIEDFFDLLMVTVTQVVESFIPRICALVIDSRVNICVQQETLKKMNAMLDKMPQDARKILFNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELACQWFSMDFVANAFKGIKDSEFETDCRMFLNLVNGILGDKRRVFTFPCLSAFLDKYELQIPSDEKLEDFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRDSKKLLTIILKDTVKISKRKGKELLLYFDASLEITNVTQKIFGANKYREFSRKQGISVAKTSVHILFDASGSQILVPESQISPVEELSTLKEKANPQEEFVKPPKHIKNSNKGDRKHGQPEIITPSKRKMSEASMIVPGAERYTVRSPILLINTSTPQRGRIKPPLQMTSSMEKPGFSKTSENGVDNAVSLKSRPCEERNREDNTDKHIKTKVIEKAENKDIEYPNQNFSKYFLQMNLFSRLPGILDNICGNKMHSKWACWTPVTNIKLCNNLRASSSSEDTFNQDIIINKNLTKKKSSSSMSDDNSEETSKVQYGKELINKQQQLDHSKHSEEKNTENTKQNDWRIESETTFKSVLLNKTVEESVIYRKKYTLSKDVNTAICDKSPSPRKNTKSHRKSGKRLTSELNSWDLKQKEMREKSKGKGFNDAAESLISQINKRYKPKDGTKSTRKLKESLIDSGFSNKSDLQLRKEKVQKKSYRQLKTTFVNVTSECPLNDVYNFNLSGADEPVIKLGVIIEIKMNAYFCSRVGLRNHDELETSLKTKDKRTVTNHKKKTLFSDTDTEYKCDDSKTDISWLRESKSKPQLIGYSRNKNVKKHKSGKSRSSLEREQPRSKMTPDKNITKKVDETVPDGRIRLPRRAAKTKKNYKDLSNSESESEQEFSHSFKEKLLIKENIHSRSKTMKPPKKQNSFSSEMQKDISKEWKNSSLLKDTIRDNSLDKSPVSLSGSPSSIEVMRCTEKTTERDFTQDFDYVTKSLSPYPKTSSPESLNSGVESPINSPNNSEKNLLCGGESCSPIPQSGFLVRKKTMYVYFLHFSVPVLILHDESHSASPLSMASEGREKIWGGLPCDSTHGSGPTLHVSRKRMYIEKDLSNSDEVALGEREEERASLLPKKLSKSEGTDFQTYKVSESISPLSTNDFSIPGENWGNEMSDVGMMYEQLNTEFRRKVHIRHKIMDYFTKHSWKTAQQHIKTMNHQIQEYRIKKLDKFQFIIIKELENFEKDSQSLKDLEKELVGFWEKIFQKFSAYQKTKLYIIHMLHLLKASLNKNVFYNTDYEETIFTSEMCSMKENMKMIQDRLLKEMQEEELLNVRRGLKSLFMAHERNNV", "length": 1453, "header": "tr|A0A8W4FPQ7-1|F1RJ15_PIG Computationally mapped isoform of Synaptonemal complex protein 2 OS=Sus scrofa OX=9823 GN=SYCP2 PE=3 SV=1 CANONICAL=F1RJ15-1" }, "locus": { "chromosome": "17", "start_pos": 59955209, "end_pos": 59876735, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092278.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092278.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080923.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080923.1" } ] } }, { "isoform_ac": "F1RJ15-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ15/entry", "sequence": { "sequence": "VPLSIFLQHLEKCIDDALRKNDFKPLKTLLQIDICEDVKIKCSKQFFHKLDDLMCRELNKKDIQTVSTILVSFGRCGKNISILGQAGLLTMIKQVTNVYISFFYMVAWFEKSKEIILSQGSSKDEAVINMIEDFFDLLMVTVTQVVESFIPRICALVIDSRVNICVQQETLKKMNAMLDKMPQDARKILFNQEMLILMSSMGERILDAGDYDLQVGIVEALCRMTTEKQRQELACQWFSMDFVANAFKGIKDSEFETDCRMFLNLVNGILGDKRRVFTFPCLSAFLDKYELQIPSDEKLEDFWIDFNLGSQTLSFYIAGDNDDHQWEAVTVPEEKVQIYSIEVRDSKKLLTIILKDTVKISKRKGKELLLYFDASLEITNVTQKIFGANKYREFSRKQGISVAKTSVHILFDASGSQILVPESQISPVEELSTLKEKANPQEEFVKPPKHIKNSNKGDRKHGQPEIITPSKRKMSEASMIVPGAERYTVRSPILLINTSTPQRGRIKPPLQMTSSMEKPGFSKTSENGVDNAVSLKSRPCEERNREDNTDKHIKTKVIEKAENKDIEYPNQNFSKYFLQMNLFSRLPGILDNICGNKMHSKWACWTPVTNIKLCNNLRASSSSEDTFNQDIIINKNLTKKKSSSSMSDDNSEETSKVQYGKELMQHNKIDKAEAEACKRNKQQQLDHSKHSEEKNTENTKQNDWRIESETTFKSVLLNKTVEESVIYRKKYTLSKDVNTAICDKSPSPRKNTKSHRKSGKRLTSELNSWDLKQKEMREKSKGKGFNDAAESLISQINKRYKPKDGTKSTRKLKESLIDSGFSNKSDLQLRKEKVQKKSYRQLKTTFVNVTSECPLNDVYNFNLSGADEPVIKLGVIIEIKMNAYFCSRVGLRNHDELETSLKTKDKRTVTNHKKKTLFSDTDTEYKCDDSKTDISWLRESKSKPQLIGYSRNKNVKKHKSGKSRSSLEREQPRSKMTPDKNITKKVDETVPDGRIRLPRRAAKTKKNYKDLSNSESESEQEFSHSFKEKLLIKENIHSRSKTMKPPKKQNSFSSEMQKDISKEWKNSSLLKDTIRDNSLDKSPVSLSGSPSSIEVMRCTEKTTERDFTQDFDYVTKSLSPYPKTSSPESLNSGVESPINSPNNSEKNLLCGGESCSPIPQSGFLVRKKTMYVYFLHFSVPVLILHDESHSASPLSMASEGREKIWGGLPCDSTHGSGPTLHVSRKRMYIEKDLSNSDEVALGEREEERASLLPKKLSKSEGTDFQTYKVSESISPLSTNDFSIPGENWGNEMSDVGMMYEQLNTEFRRKVHIRHKIMDYFTKHSWKTAQQHIKTMNHQIQEYRIKKLDKFQFIIIKELENFEKDSQSLKDLEKELVGFWEKIFQKFSAYQKTKLYIIHMLHLLKASLNKNVFYNTDYEETIFTSEMCSMKENMKMIQDRLLKEMVNLKILKLARRMIYLYVS", "length": 1462, "header": "tr|F1RJ15-1|F1RJ15_PIG Isoform 1 of Synaptonemal complex protein 2 OS=Sus scrofa OX=9823 GN=SYCP2 PE=3 SV=4 CANONICAL=F1RJ15-1" }, "locus": { "chromosome": "17", "start_pos": 59955209, "end_pos": 59877508, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008259.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008259.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008040.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008040.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FKM8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKM8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RJ15", "url": "https://www.uniprot.org/uniprotkb/F1RJ15" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1RJ15", 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"https://www.ensembl.org/id/ENSSSCT00000084350.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063699.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063699.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6H3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6H3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519431", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519431", "resource": "KEGG Pathway" }, { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7G580-1", "protein_name": "TBC1 domain family member 17", "gene_name": "Tbc1d17", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEASSYRVVFEKGGVYLHTSARKHQDPDSLIAGVIRVVEKDSDVLLHWAPVEEAGDPTQILFSKKDSSGVEPSTTEEEPTFDPGYEPDWAVISTVRPRPHLAEPRRGAEPSCPQSSWAFSVSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDPRLYLVFPHDSSALSNSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPHPEGASPPDLPLRPDDEPEPGFEVISCVELGQRPTVERGPPVTEEEWTRHVGPDGRLHNIPELKNRIFSGGLSPGLRREAWKFLLGYLSWEGSAEEHKAHVRKKTDEYFRMKLQWKSVSAEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQGMSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFEESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPSLHLLVACAILDMERDALMLSGFGANEILKHINELTMKLSVEDVLTRAEALYRQLTACPELPHNVQEVLGLAQPKEPSSPSPPISPLPLSTRAPLPPRPPREDVVAQPDSSLEILPEDDDGADS", "length": 648 }, "evidence": [ { "id": "F1RHU3", "url": "https://omabrowser.org/oma/group/F1RHU3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1N196-1", "protein_name": "TBC1 domain family member 17", "gene_name": "TBC1D17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGAGYRVVFEKGGVYLHTSAKKHQDPDSLIAGVIRVVEKDNDVLLHWAPIEEAGDSSQIFFSKKDTSGGDSCTSEEEPTFDPGYEPDWAVISTVRPRPRHSEPKRGAEPSSPRGSWAFSVSLGELRSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPHDSSALSSSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPHLEGTSPDLPPAPDDEPEPGFEVISCVELGPRPAVERAPPVTEEEWASHVGPEGRLQRVPELKARIFSGGLSPSLRREAWKFLLGYLSWEGSMEEHKAHVRKKTDEYFRMKLQWKSVSPEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQGMSDLLSPILYVTQNEVDAFWCFCGFMELVHGNFEESQETMKRQLGQLLLLLRVLDPPLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTMKLSVEDVLTRAEALYRQLTACGELPHNVQEVLGLASPAEPQSPSPSASPLPLSPTRAPPAPLPPADTATATQPDSSLEILPEEEDDEEGVES", "length": 652 }, "evidence": [ { "id": "F1RHU3", "url": "https://omabrowser.org/oma/group/F1RHU3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F4KG91-1", "protein_name": "TBC1 domain family member 15", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMEATELQDLSDDADYAASQQQGSASMMRSDSGKRSLQSEHEDAVLIYLKDNVAIHPTQFASERISGRLKLTKQDSVLFLSWIPYKGQTSNAKLSEKDRSLYTITAVPFTEVRSIRRHTPALGWQYVIVVLSSGLAFPPLYFYNGGVREFLAMVKQHVFLARSSEDQNVFIVNDFQSPLQRTLSSLELPSSLPVASGQSVYPLDGGSSSENQRRTSSDVGNRVSSVSQSGFRKQKSHDPTRDLSIHLLEKFSLVTKFARDTTTQLFSENNGFGSIDKRWNNQPVHSYPEKLSNIAEEKHHEIRHSYSENDLLKDDEISYIDVPADPLEFDKLSLMWGKPRQPPMGHKERRNDISPSIKCRISTEYFTALLDSEGRVVESKALRERVFYGGIEHQLRREVWPFLLGYYAYDSTYAEREYLRSVKRMEYATLKQQWQSISPEQAKRFTKYRERKGLIDKDVVRTDRAFEYYEGDDNLHVNSMRDILLTYSFYNFDLGYCQGMSDYLSPILFVMEDESESFWCFVALMERLGPNFNRDQNGMHTQLFALSKLVELLDSPLHNYFKENDCLNYFFCFRWILIQFKREFEYEKTMQLWEVMWTHYLSEHFHLYVCVAVLKRCRSKIMGEQMDFDTLLKFINELSGHIDLDSTVRDAEALCIEAGENGAASIPPGTPPSLPLDDGTLYPQEDDVL", "length": 690 }, "evidence": [ { "id": "F1RHU3", "url": "https://omabrowser.org/oma/group/F1RHU3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8BYH7-1", "protein_name": "TBC1 domain family member 17", "gene_name": "Tbc1d17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGSSYRVVFEKGGVYLHTSARKHQDPDSLIAGVIRVVEKDSDVFLHWAPVEEAGDPTQILFKKDPSRGEPSTSEEEPTFDPGYEPDWAVISTVRPQPHLAEPRKGAEPSSSRSSWAFSVSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPQDPSALSDSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPHPEGASSPNLPPLPDDEPEPGFEVISCVELGQRPTVERAPPVTEEEWNRYVGPEGRLQNVPELKNRIFSGGLSPGLRREAWKFLLGYLSWESSAEEHKAHVRKKTDEYFRMKLQWKSVSAEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLSLLHDILLTYCMYHFDLGYVQGMSDLLSPILFVVQNEVDAFWCFCGFMELVHGNFEESQETMKRQLGQLLLLLRVLDQPLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTMKLSVEDVLTRAEALYRQLTACPELPHNVQEILGLAQPEEPSSPSPPVSPMPLSPTRAPLPPPLPEEVIPQPDSSLEILPEDEDGA", "length": 645 }, "evidence": [ { "id": "F1RHU3", "url": "https://omabrowser.org/oma/group/F1RHU3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HA65-1", "protein_name": "TBC1 domain family member 17", "gene_name": "TBC1D17", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGAGYRVVFEKGGVYLHTSAKKYQDRDSLIAGVIRVVEKDNDVLLHWAPVEEAGDSTQILFSKKDSSGGDSCASEEEPTFDPGYEPDWAVISTVRPQLCHSEPTRGAEPSCPQGSWAFSVSLGELKSIRRSKPGLSWAYLVLVTQAGGSLPALHFHRGGTRALLRVLSRYLLLASSPQDSRLYLVFPHDSSALSNSFHHLQLFDQDSSNVVSRFLQDPYSTTFSSFSRVTNFFRGALQPQPEGAASDLPPPPDDEPEPGFEVISCVELGPRPTVERGPPVTEEEWARHVGPEGRLQQVPELKNRIFSGGLSPSLRREAWKFLLGYLSWEGTAEEHKAHIRKKTDEYFRMKLQWKSVSPEQERRNSLLHGYRSLIERDVSRTDRTNKFYEGPENPGLGLLNDILLTYCMYHFDLGYVQGMSDLLSPILYVIQNEVDAFWCFCGFMELVQGNFEESQETMKRQLGRLLLLLRVLDPLLCDFLDSQDSGSLCFCFRWLLIWFKREFPFPDVLRLWEVLWTGLPGPNLHLLVACAILDMERDTLMLSGFGSNEILKHINELTMKLSVEDVLTRAEALHRQLTACPELPHNVQEILGLAPPAEPHSPSPTASPLPLSPTRAPPTPPPSTDTAPQPDSSLEILPEEEDEGADS", "length": 648 }, "evidence": [ { "id": "F1RHU3", "url": "https://omabrowser.org/oma/group/F1RHU3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" }, { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "F1RHU3", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RHU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHU3" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 310, "end_pos": 520, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK22-1", "uniprot_ac": "F1RK22", "uniprot_id": "F1RK22_PIG", "mass": { "chemical_mass": 22701.0, "monoisotopic_mass": 22701.0 }, "refseq": { "ac": "XP_003131007", "name": "emopamil-binding protein-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131007" }, "gene_names": [ { "name": "EBPL", "type": "recommended", "evidence": [ { "id": "F1RK22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK22" } ] }, { "name": "EBPL", "type": "synonym", "evidence": [ { "id": "XP_003131007", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131007" } ] } ], "protein_names": [ { "name": "EBP like", "type": "synonym", "evidence": [ { "id": "F1RK22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK22/entry#names_and_taxonomy" } ] }, { "name": "emopamil-binding protein-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003131007", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131007" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK22", "url": "https://www.uniprot.org/uniprotkb/F1RK22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EBPL", "url": "https://www.uniprot.org/uniprotkb/F1RK22", "locus": { "chromosome": "11", "start_pos": 18072633, "end_pos": 18040011, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009393", "url": "https://www.ensembl.org/id/ENSSSCG00000009393" } ] } } ], "crossref": [ { "id": "F1RK22", "url": "https://alphafold.ebi.ac.uk/entry/F1RK22", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009393", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009393", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516290", "url": "https://www.ncbi.nlm.nih.gov/gene/100516290", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033118", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033118", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516290", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VYLWLYL", "url": "https://omabrowser.org/oma/group/VYLWLYL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RK22", "url": "https://www.orthodb.org/?gene=F1RK22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14207:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14207:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131007", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131007", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R789", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R789", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R789-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R789-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK22", "url": "https://www.uniprot.org/uniprotkb/F1RK22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK22-1", "url": "https://www.uniprot.org/uniprotkb/F1RK22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCAGWELGSAAGGSLLLTAALLAVSCALGLRLGRGRGAADRGALAWLCFDALVHFALEGPFVYLSLVGNITDSDALIASLWKEYGKADARWLTSDPTIVALEILTVVLDGSLALVLIYAIVKEKYYRHFVQITLCVCELYGGWMTFCPDWLLGSPNLSTNNWLYFWVYLVFFNGVWVLIPGLLLWQSWVELKDVHCKGSNAGKKFQ", "length": 206, "header": "tr|F1RK22-1|F1RK22_PIG Isoform 1 of EBP like OS=Sus scrofa OX=9823 GN=EBPL PE=3 SV=1 CANONICAL=F1RK22-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R789-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R789/entry", "sequence": { "sequence": "MCAGWELGSAAGGSLLLTAALLAVSCALGLRLGRGRGAADRGALAWLCFDALVHFALEGPFVYLSLVGNITDSDALIASLCISYRLPCACVNCMAGG", "length": 97, "header": "tr|A0A5G2R789-1|F1RK22_PIG Computationally mapped isoform of EBP like OS=Sus scrofa OX=9823 GN=EBPL PE=3 SV=1 CANONICAL=F1RK22-1" }, "locus": { "chromosome": "11", "start_pos": 18072138, "end_pos": 18040082, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089820.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089820.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072205.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072205.1" } ] } }, { "isoform_ac": "A0A5G2RIJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIJ7/entry", "sequence": { "sequence": "MCAGWELGSAAGGSLLLTAALLAVSCALGLRLGRGRGAADRGALAWLCFDALVHFALEGPFVYLSLVGNITDSDALIASLWKEYGKADARWLTSDPTIVALEILTVVLDGSLALVLIYAIVKEKYYRDTVTRDNE", "length": 135, "header": "tr|A0A5G2RIJ7-1|F1RK22_PIG Computationally mapped isoform of EBP like OS=Sus scrofa OX=9823 GN=EBPL PE=3 SV=1 CANONICAL=F1RK22-1" }, "locus": { "chromosome": "11", "start_pos": 18070749, "end_pos": 18040082, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069879.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069879.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071427.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071427.1" } ] } }, { "isoform_ac": "F1RK22-1", "url": "https://www.uniprot.org/uniprotkb/F1RK22/entry", "sequence": { "sequence": "MCAGWELGSAAGGSLLLTAALLAVSCALGLRLGRGRGAADRGALAWLCFDALVHFALEGPFVYLSLVGNITDSDALIASLWKEYGKADARWLTSDPTIVALEILTVVLDGSLALVLIYAIVKEKYYRHFVQITLCVCELYGGWMTFCPDWLLGSPNLSTNNWLYFWVYLVFFNGVWVLIPGLLLWQSWVELKDVHCKGSNAGKKFQ", "length": 206, "header": "tr|F1RK22-1|F1RK22_PIG Isoform 1 of EBP like OS=Sus scrofa OX=9823 GN=EBPL PE=3 SV=1 CANONICAL=F1RK22-1" }, "locus": { "chromosome": "11", "start_pos": 18072326, "end_pos": 18040082, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010292.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010292.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010024.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010024.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R789", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R789" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516290", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZXC8-1", "protein_name": "EBP like", "gene_name": "Ebpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGERWALGPAAGSSLLLCSALLAAGCTLGLRLGRGRSAVERWVLAWLCYDSLVHFVLEGAFVYLSIVGNVADSQGLIASLWKEYGKADARWLYFDPTIVSLEILTVVLDGFLALVLIYAIVKEKYYRHFVQITLCVCELYGCWMTFFPEWLVGSPNLNTNSWLYLWIYLVFFNGLWVLIPGLLLWQSWVELKKRGHQEASLARKHK", "length": 206 }, "evidence": [ { "id": "F1RK22", "url": "https://omabrowser.org/oma/group/F1RK22/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H8Q7-1", "protein_name": "Emopamil-binding protein-like", "gene_name": "Ebpl", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGEDWALGPALGSSLLLCSALLAAGCALGLRLGRGRSVVERGVLAWLCYDALVHFVLEGAFVYLSLVGNVADSQGLIASLWKEYGKADARWLYFDSTIVSVEILTVVLDGFLALVLIYAIVKEKYYRHFIQITLCVCELYGGWMTFSPEWLLGSPNLNTKSYLYFWVYLVFFNGLWVLIPGLLLWQSWRALKETYYQGANLEKKHL", "length": 206 }, "evidence": [ { "id": "F1RK22", "url": "https://omabrowser.org/oma/group/F1RK22/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9BY08-1", "protein_name": "Emopamil-binding protein-like", "gene_name": "EBPL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAEWELGAEAGGSLLLCAALLAAGCALGLRLGRGQGAADRGALIWLCYDALVHFALEGPFVYLSLVGNVANSDGLIASLWKEYGKADARWVYFDPTIVSVEILTVALDGSLALFLIYAIVKEKYYRHFLQITLCVCELYGCWMTFLPEWLTRSPNLNTSNWLYCWLYLFFFNGVWVLIPGLLLWQSWLELKKMHQKETSSVKKFQ", "length": 206 }, "evidence": [ { "id": "F1RK22", "url": "https://omabrowser.org/oma/group/F1RK22/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D0P0-1", "protein_name": "Emopamil-binding protein-like", "gene_name": "Ebpl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEHWALGPEAGSSLLLCSALLAVGCALGLRLGRGRSAVERWVLAWLCYDSLVHFVLEGAFVYLSIVGNVADSQGLIASLWKEYGKADTRWLYSDPTVVSLEILTVVLDGLLALVLIYAIVKEKYYRHFVQIVLCVCELYGCWMTFFPEWLVGSPSLNTSSWLYLWVYLVFFNGLWVLIPGLLLWQSWVELKKRDSQEANLAKKHK", "length": 206 }, "evidence": [ { "id": "F1RK22", "url": "https://omabrowser.org/oma/group/F1RK22/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RK22", "url": "https://www.uniprot.org/uniprotkb/F1RK22" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1RK22", "url": "https://www.uniprot.org/uniprotkb/F1RK22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sterol metabolic process", "id": "GO:0016125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016125", "evidence": [ { "database": "UniProtKB", "id": "F1RK22", "url": "https://www.uniprot.org/uniprotkb/F1RK22" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cholestenol delta-isomerase activity", "id": "GO:0047750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047750", "evidence": [ { "database": "UniProtKB", "id": "F1RK22", "url": "https://www.uniprot.org/uniprotkb/F1RK22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RK22-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 206, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RK22-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RK22" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RK22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK22" }, { "id": "PS51751", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51751" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EXPERA", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 184, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGW1-1", "uniprot_ac": "F1RGW1", "uniprot_id": "F1RGW1_PIG", "mass": { "chemical_mass": 46617.0, "monoisotopic_mass": 46617.0 }, "refseq": { "ac": "XP_001927902", "name": "putative thiamine transporter SLC35F3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927902" }, "gene_names": [ { "name": "SLC35F3", "type": "recommended", "evidence": [ { "id": "F1RGW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGW1" } ] }, { "name": "SLC35F3", "type": "synonym", "evidence": [ { "id": "XP_001927902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927902" } ] } ], "protein_names": [ { "name": "Solute carrier family 35 member F3", "type": "synonym", "evidence": [ { "id": "F1RGW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGW1/entry#names_and_taxonomy" } ] }, { "name": "putative thiamine transporter SLC35F3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927902", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927902" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGW1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC35F3", "url": "https://www.uniprot.org/uniprotkb/F1RGW1", "locus": { "chromosome": "14", "start_pos": 56786918, "end_pos": 57106772, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010162", "url": "https://www.ensembl.org/id/ENSSSCG00000010162" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010162", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010162", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157650", "url": "https://www.ncbi.nlm.nih.gov/gene/100157650", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157650", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157650", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MCKSPER", "url": "https://omabrowser.org/oma/group/MCKSPER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGW1", "url": "https://www.orthodb.org/?gene=F1RGW1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19346:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19346:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927902", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927902", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R7N7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7N7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGW1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGW1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKHSARVAPLSACNSPVLTLTKVEGEERPRESLGPAEAQAPAGAEASGRTSHLCWRCSQAQLKKIFWGVAVVLCVCSSWAGATQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVCKSAEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSVLGVFNIVFITCIPIILYFTKVEHWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSKIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEAAEGGADVGLGPQSKSRRARPSFAR", "length": 421, "header": "tr|F1RGW1-1|F1RGW1_PIG Isoform 1 of Solute carrier family 35 member F3 OS=Sus scrofa OX=9823 GN=SLC35F3 PE=4 SV=2 CANONICAL=F1RGW1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R7N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7N7/entry", "sequence": { "sequence": "MGIREFPGGAPRGKSIAIGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSVEDLTSGPVGLTSIEERILRITGYYGYQPWAASYKREERPRESLGPAEAQAPAGAEASGRTSHLCWRCSQAQLKKIFWGVAVVLCVCSSWAGATQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVCKSAEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSVLGVFNIVFITCIPIILYFTKVEHWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSKIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEAAEGGADVGLGPQSKSRRARPSFAR", "length": 490, "header": "tr|A0A5G2R7N7-1|F1RGW1_PIG Computationally mapped isoform of Solute carrier family 35 member F3 OS=Sus scrofa OX=9823 GN=SLC35F3 PE=4 SV=1 CANONICAL=F1RGW1-1" }, "locus": { "chromosome": "14", "start_pos": 57106573, "end_pos": 56788181, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067474.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067474.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072361.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072361.1" } ] } }, { "isoform_ac": "F1RGW1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1/entry", "sequence": { "sequence": "MKKHSARVAPLSACNSPVLTLTKVEGEERPRESLGPAEAQAPAGAEASGRTSHLCWRCSQAQLKKIFWGVAVVLCVCSSWAGATQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVCKSAEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSVLGVFNIVFITCIPIILYFTKVEHWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSKIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEAAEGGADVGLGPQSKSRRARPSFAR", "length": 421, "header": "tr|F1RGW1-1|F1RGW1_PIG Isoform 1 of Solute carrier family 35 member F3 OS=Sus scrofa OX=9823 GN=SLC35F3 PE=4 SV=2 CANONICAL=F1RGW1-1" }, "locus": { "chromosome": "14", "start_pos": 56880908, "end_pos": 56788181, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011127.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011127.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010839.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010839.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R7N7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7N7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157650", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MIC8-1", "protein_name": "Solute carrier family 35 member F3", "gene_name": "SLC35F3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKKHSARVAPLSACNSPVLTLTKVEGEERPRDSPGPAEAQVPAGTEAGGRPSRHCWRCSRAQLKKIFWGVAVVLCVCASWAGATQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYAGHICKSAEKQSVKQRYRECCRFFGDNGLTLNVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPVILYFTKVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSKIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEAAEGGADLGLGLQSKSRRARPSFAR", "length": 421 }, "evidence": [ { "id": "F1RGW1", "url": "https://omabrowser.org/oma/group/F1RGW1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6ASV5-1", "protein_name": "Solute carrier family 35, member F3", "gene_name": "Slc35f3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKHSARVAPLSACNSPVLTLTKVEGEERPREPPGPAEAQAPAGTEAGGRTSRHHWTCSQEQLRKVFWGVAVVFCVCASWSGSTQLARLTFKTFDAPFTLTWFATNWNFLFFPLYYAGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINATDVSVLFCCNKSFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTRVEYWNSFDDIPWGNLCGFSILLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSQIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEETAESSGDLGTGPQSRSRRARPSFAR", "length": 421 }, "evidence": [ { "id": "F1RGW1", "url": "https://omabrowser.org/oma/group/F1RGW1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Y3J5-1", "protein_name": "Solute carrier family 35 member F3", "gene_name": "SLC35F3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGIREFPNGSARGKAATLGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSVEDLTSASVGLTSIEERILRITGYYGYQPWAASYKRDERSRESPAPAEAQMQAGAEGGGRVSRCCWKCSVTQLKKIFWGVAVVLGVCSSWSGSTQLAKLTFKKFDAPFTLTWFATNWNFLFFPLYYLGHVFKSAEKQSPKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAIFAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSVLAVFNVLFVTCIPVILYFTKVEYWSSFDIVPWGNLCGFSILLLTFNILLNFGIAITYPTLISLGIVLSVPVNAVVDHYTSEIVFNSVRVIAIVIIGLGFLLLLLPEEWDVWVIKLLTRLKVRKKEELPEGNGDVTSGLPNKSRRTRPSMSSFAH", "length": 493 }, "evidence": [ { "id": "F1RGW1", "url": "https://omabrowser.org/oma/group/F1RGW1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q1LZI2-1", "protein_name": "Solute carrier family 35 member F3", "gene_name": "Slc35f3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKHSARVAPLSACNSPVLTLTKVEGEERPREPPGPAEAQAPAGTEAGGRTSRHNWTCSQERLKKVFWGVAVVFCVCASWAGSTQLARLTFKTFDAPFTLTWFATNWNFLFFPLYYAGHVCKSTEKQSMKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINATDVSVLFCCNKSFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPVILYFTRVEYWNSFDDIPWGNLCGFSILLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSQIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEETAESSGDLGTGPQSRSRRARPSFAR", "length": 421 }, "evidence": [ { "id": "F1RGW1", "url": "https://omabrowser.org/oma/group/F1RGW1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IY50-1", "protein_name": "Solute carrier family 35 member F3", "gene_name": "SLC35F3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKKHSARVAPLSACNSPVLTLTKVEGEERPRDSPGPAEAQAPAGVEAGGRASRRCWTCSRAQLKKIFWGVAVVLCVCSSWAGSTQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYVGHVCKSTEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVASASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTKVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSIPVNAVIDHYTSQIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEPAEGAADLSSGPQSKNRRARPSFAR", "length": 421 }, "evidence": [ { "id": "F1RGW1", "url": "https://omabrowser.org/oma/group/F1RGW1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RGW1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "choline transmembrane transporter activity", "id": "GO:0015220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015220", "evidence": [ { "database": "UniProtKB", "id": "F1RGW1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "thiamine transport", "id": "GO:0015888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015888", "evidence": [ { "database": "UniProtKB", "id": "F1RGW1", "url": "https://www.uniprot.org/uniprotkb/F1RGW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGW1" }, { "id": "PF00892", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00892" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EamA", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 222, "start_aa": "Trp", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 176, "end_pos": 178 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RNJ7-1", "uniprot_ac": "F1RNJ7", "uniprot_id": "F1RNJ7_PIG", "mass": { "chemical_mass": 59684.0, "monoisotopic_mass": 59684.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Signal peptide, CUB domain and EGF like domain containing 2", "type": "synonym", "evidence": [ { "id": "F1RNJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNJ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNJ7", "url": "https://www.uniprot.org/uniprotkb/F1RNJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RNJ7", "locus": {} } ], "crossref": [ { "id": "F1RNJ7", "url": "https://alphafold.ebi.ac.uk/entry/F1RNJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014575", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014575", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24046", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24046", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24046:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24046:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2RBD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNJ7", "url": "https://www.uniprot.org/uniprotkb/F1RNJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RNJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFGEDLRPQLHQPPWLLCMCLQRGVYPLRLHPLRRHRRVQRPQRRLSAGLCEHGGRLRVPVPLWAHAALERKGLCGSRGGLAAGASPRVSLQCTRSAGGDRCSLSCRSGIHLSSGLQEAYSVTCGSSSPPRSKQRESAGSASGDVASVRTSVTFKLNGGICSLKKAEPFPEGLRPAPPVSCRAGTYYDGAQERCILCPDGTFQNEEGQITCEPCPRPENPGVQKTPEAWNVSECGGLCQPGEYSADGFAPCQLCALGTFQPEAGRTSCLPCGGGLPTKRLGATSFQDCETRVQCSPGHFYTTTHRCVRCPAGTYQPEFGKNSCVSCPGNTTTDFDGATNLTQCKNRRCGGELGDFTGYIESPNYPGNYPANAECTWVINPPPKRRILVVVPEIFLPIEDDCGDFLVMRKTASRGSATTYETCQTYERPIAFTSRSRRLWIQFKSNEGNSAKGFQVPYVTYDEDYQELIEDIVRDGRLYASENHQEILKDKKLIKALFDVLAHPQNYFRYTAQESREMFPRSFIRLLRSKVSRFLRPYR", "length": 539, "header": "tr|F1RNJ7-1|F1RNJ7_PIG Isoform 1 of Signal peptide, CUB domain and EGF like domain containing 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1RNJ7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RBD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBD1/entry", "sequence": { "sequence": "MLFGEDLRPQLHQPPWLLCMCLQRGVYPLRLHPLRRHRRVQRPQRRLSAGLCEHGGRLRVPVPLWAHAALERKGLCGSRGGLAAGASPRVSLQCTRSAGGDRCSLSCRSGIHLSSDVASVRTSVTFKLNGGICSLKKAEPFPEGLRPAPPVSCRAGTYYDGAQERCILCPDGTFQNEEGQITCEPCPRPENPGVQKTPEAWNVSECGGLCQPGEYSADGFAPCQLCALGTFQPEAGRTSCLPCGGGLPTKRLGATSFQDCETRVQCSPGHFYTTTHRCVRCPAGTYQPEFGKNSCVSCPGNTTTDFDGATNLTQCKNRRCGGELGDFTGYIESPNYPGNYPANAECTWVINPPPKRRILVVVPEIFLPIEDDCGDFLVMRKTASRGSATTYETCQTYERPIAFTSRSRRLWIQFKSNEGNSAKGFQVPYVTYDEDYQELIEDIVRDGRLYASENHQEILKDKKLIKALFDVLAHPQNYFRYTAQESREMFPRSFIRLLRSKVSRFLRPYR", "length": 510, "header": "tr|A0A5G2RBD1-1|F1RNJ7_PIG Computationally mapped isoform of Signal peptide, CUB domain and EGF like domain containing 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=F1RNJ7-1" }, "locus": { "chromosome": "9", "start_pos": 449349, "end_pos": 415647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070081.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070081.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071471.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071471.1" } ] } }, { "isoform_ac": "F1RNJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RNJ7/entry", "sequence": { "sequence": "MLFGEDLRPQLHQPPWLLCMCLQRGVYPLRLHPLRRHRRVQRPQRRLSAGLCEHGGRLRVPVPLWAHAALERKGLCGSRGGLAAGASPRVSLQCTRSAGGDRCSLSCRSGIHLSSGLQEAYSVTCGSSSPPRSKQRESAGSASGDVASVRTSVTFKLNGGICSLKKAEPFPEGLRPAPPVSCRAGTYYDGAQERCILCPDGTFQNEEGQITCEPCPRPENPGVQKTPEAWNVSECGGLCQPGEYSADGFAPCQLCALGTFQPEAGRTSCLPCGGGLPTKRLGATSFQDCETRVQCSPGHFYTTTHRCVRCPAGTYQPEFGKNSCVSCPGNTTTDFDGATNLTQCKNRRCGGELGDFTGYIESPNYPGNYPANAECTWVINPPPKRRILVVVPEIFLPIEDDCGDFLVMRKTASRGSATTYETCQTYERPIAFTSRSRRLWIQFKSNEGNSAKGFQVPYVTYDEDYQELIEDIVRDGRLYASENHQEILKDKKLIKALFDVLAHPQNYFRYTAQESREMFPRSFIRLLRSKVSRFLRPYR", "length": 539, "header": "tr|F1RNJ7-1|F1RNJ7_PIG Isoform 1 of Signal peptide, CUB domain and EGF like domain containing 2 OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1RNJ7-1" }, "locus": { "chromosome": "9", "start_pos": 449349, "end_pos": 415647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015925.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015925.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015505.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015505.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RBD1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBD1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RNJ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 539, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, 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"MARHVFLTGPAGVGKTTLIQKASEALKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGMRGPLSRIGSTPPPGKRECRVGQYVVDLTSFEQLALPVLRTAGSNSPGQRVCVIDEVGKMELFSQPFIQAVRQTLSTPGTVILGTIPVPKGKPLALVEEIRTRNDVKVLSVTKDNRNHLLPEIVACVQSGRK", "length": 189, "header": "tr|F1RGU8-1|F1RGU8_PIG Isoform 1 of Nucleoside-triphosphatase, cancer-related OS=Sus scrofa OX=9823 GN=NTPCR PE=1 SV=3 CANONICAL=F1RGU8-1" }, "locus": { "chromosome": "14", "start_pos": 57832989, "end_pos": 57803133, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011132.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011132.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010844.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010844.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 68, "start_aa": "Thr", "end_pos": 68, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr68", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RC86", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152811", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152811", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MM52-1", "protein_name": "Nucleoside-triphosphatase, cancer-related", "gene_name": "NTPCR", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARHVFLTGPPGVGKTTLIQKATEVLKSSGMPVDGFYTEEVRQGGRRIGFDVVTLSGIRGPLSRIGSEPLPGKRECRVGQYVVDLTSFEQLALPVLRNAGASGRPGQSICVIDEVGKMELFSQPFIQAVRQVLSTPGTVVLGTIPVPKGKPLALVEEIRTRKDVKVFSVTKENRNHLLPEIVTHMQSSRK", "length": 190 }, "evidence": [ { "id": "F1RGU8", "url": "https://omabrowser.org/oma/group/F1RGU8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BSD7-1", "protein_name": "Cancer-related nucleoside-triphosphatase", "gene_name": "NTPCR", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVTCVQSSRK", "length": 190 }, "evidence": [ { "id": "F1RGU8", "url": "https://omabrowser.org/oma/group/F1RGU8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQA9-1", "protein_name": "Cancer-related nucleoside-triphosphatase homolog", "gene_name": "Ntpcr", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRHVFLTGPPGVGKTTLIQKAIEVLQSSGLPVDGFYTQEVRQEGKRIGFDVVTLSGAQGPLSRVGSQPLPGKPECRVGQYVVNLDSFEQLALPVLRNAGSSCGPKHRVCIIDEIGKMELFSQPFIQAVRQMLSTPGIIVVGTIPVPKGKPLALVEEIRKRRDVKVFNVTRDNRNSLLPDIVAVVQSSRT", "length": 190 }, "evidence": [ { "id": "F1RGU8", "url": "https://omabrowser.org/oma/group/F1RGU8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VP84-1", "protein_name": "Nucleoside-triphosphate phosphatase", "gene_name": "Dmel\\CG10581", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKNQKNITIILTGPPGVGKTTLVHKICSALQDRGRILQGFYTEEMRGEGTSQRIGFDVVTLAGKRAILSRKNPGDQLRRPKVGEYSVFVQDFDSLALPVLGTQDSQPEPDLLVVDEVGKMELLSKRFESAMADLLKKKRALLVTIPEKSTLALVEQLRKSAGSKIYQVTKFNRNALAGEITEEITKALL", "length": 189 }, "evidence": [ { "id": "F1RGU8", "url": "https://omabrowser.org/oma/group/F1RGU8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 68 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", 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{ "ac": "XP_020942259", "name": "thioredoxin domain-containing protein 11 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942259" }, "gene_names": [ { "name": "TXNDC11", "type": "recommended", "evidence": [ { "id": "F1RL25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL25" } ] }, { "name": "TXNDC11", "type": "synonym", "evidence": [ { "id": "XP_020942259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942259" } ] } ], "protein_names": [ { "name": "Thioredoxin domain containing 11", "type": "synonym", "evidence": [ { "id": "F1RL25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL25/entry#names_and_taxonomy" } ] }, { "name": "thioredoxin domain-containing protein 11 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020942259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942259" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RL25", "url": "https://www.uniprot.org/uniprotkb/F1RL25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TXNDC11", "url": "https://www.uniprot.org/uniprotkb/F1RL25", "locus": { "chromosome": "3", "start_pos": 31445632, "end_pos": 31376510, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007896", "url": "https://www.ensembl.org/id/ENSSSCG00000007896" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007896", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007896", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02981", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02981", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02995", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02995", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03006", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03006", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100622177", "url": "https://www.ncbi.nlm.nih.gov/gene/100622177", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622177", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622177", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VIYLYHQ", "url": "https://omabrowser.org/oma/group/VIYLYHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RL25", "url": "https://www.orthodb.org/?gene=F1RL25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46497", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46497", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46497:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46497:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26234", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26234", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-209968", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209968", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RD12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RD12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL25", "url": "https://www.uniprot.org/uniprotkb/F1RL25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL25-1", "url": "https://www.uniprot.org/uniprotkb/F1RL25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSECGGRGSGSSSSDDAADEGGGGGGPAGSGFLSPAPASSSEGRLRRGLHGASLMARRRPELLCGAVALGCALLLALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDYAEHVRRDSEVVLLFFYAPWCGQSIAARAEIEQAARQLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFNGSPQPPGYLTFFTSALHSLKKDYLGTVRFGVITNKHLAKLVSLAHSGSVYLHRHFNTSLVFPREVINYTAENVYKWALENRETLLRWLRPHGGKSLLLQNELKKGPALFLFIPFNPLAESHPLIDEITEVALEYNNCHGDQVVERLLQHLRRVDAPVFKSLAPEPPARLLDPPLGSASPCCNTVVLPQWHSISRTHNVCELCVNQTAGGVRPSSVSVPQCSFFDMAAALDSFYLKEQTFYHVASDSIECSNFLSFYSPFSYYSACCRTISRGGTGLIDSEQDAFESPTTAFSSLEKKCEVDPPSSVPHIEENRYLFPELDVTSTSFTGLSCRTNKTLNMYLLDSNLFWLYAERLGAPSTAQVKEFATIVDVKEESHYILDPKLALMKFTLESFIQNFSALYSPLKRHLIGSDSAQFSSQRFITEVTTDSFWEVVLQKQDVLLLYYAQWCGFCPSLNHIFIQLARLLPADTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLSVKYPEDLPITLPNLLRFILHHSNPASSAPRNPAHPPTKECLQSEAVLQQGHISHLEREIQKLRAEIGALQRAQAQVEARLASARRDEHRLRQQQQALERQHGLLRLHSQQLQSLYEHKTRELEEVARKLQELADASENLLTENTWLKILVATMERKLEGRDRPQDRAPSAHPEPAGTPRLPAGTPPPSNVSATLASERSQENRTD", "length": 951, "header": "tr|F1RL25-1|F1RL25_PIG Isoform 1 of Thioredoxin domain containing 11 OS=Sus scrofa OX=9823 GN=TXNDC11 PE=4 SV=3 CANONICAL=F1RL25-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RD12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD12/entry", "sequence": { "sequence": "MSECGGRGSGSSSSDDAADEGGGGGGPAGSGFLSPAPASSSEGRLRRGLHGASLMARRRPELLCGAVALGCALLLALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDYAEHVRRDSEVVLLFFYAPWCGQSIAARAEIEQAARQLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYESPTSALVLQPGVLGYFEFNGSPQPPGYLTFFTSALHSLKKGPYPQHMDVSRRGFQLELQPLAYTTATAPPD", "length": 301, "header": "tr|A0A5G2RD12-1|F1RL25_PIG Computationally mapped isoform of Thioredoxin domain containing 11 OS=Sus scrofa OX=9823 GN=TXNDC11 PE=4 SV=1 CANONICAL=F1RL25-1" }, "locus": { "chromosome": "3", "start_pos": 31413955, "end_pos": 31376671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067751.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067751.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072202.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072202.1" } ] } }, { "isoform_ac": "F1RL25-1", "url": "https://www.uniprot.org/uniprotkb/F1RL25/entry", "sequence": { "sequence": "MSECGGRGSGSSSSDDAADEGGGGGGPAGSGFLSPAPASSSEGRLRRGLHGASLMARRRPELLCGAVALGCALLLALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDYAEHVRRDSEVVLLFFYAPWCGQSIAARAEIEQAARQLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFNGSPQPPGYLTFFTSALHSLKKDYLGTVRFGVITNKHLAKLVSLAHSGSVYLHRHFNTSLVFPREVINYTAENVYKWALENRETLLRWLRPHGGKSLLLQNELKKGPALFLFIPFNPLAESHPLIDEITEVALEYNNCHGDQVVERLLQHLRRVDAPVFKSLAPEPPARLLDPPLGSASPCCNTVVLPQWHSISRTHNVCELCVNQTAGGVRPSSVSVPQCSFFDMAAALDSFYLKEQTFYHVASDSIECSNFLSFYSPFSYYSACCRTISRGGTGLIDSEQDAFESPTTAFSSLEKKCEVDPPSSVPHIEENRYLFPELDVTSTSFTGLSCRTNKTLNMYLLDSNLFWLYAERLGAPSTAQVKEFATIVDVKEESHYILDPKLALMKFTLESFIQNFSALYSPLKRHLIGSDSAQFSSQRFITEVTTDSFWEVVLQKQDVLLLYYAQWCGFCPSLNHIFIQLARLLPADTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLSVKYPEDLPITLPNLLRFILHHSNPASSAPRNPAHPPTKECLQSEAVLQQGHISHLEREIQKLRAEIGALQRAQAQVEARLASARRDEHRLRQQQQALERQHGLLRLHSQQLQSLYEHKTRELEEVARKLQELADASENLLTENTWLKILVATMERKLEGRDRPQDRAPSAHPEPAGTPRLPAGTPPPSNVSATLASERSQENRTD", "length": 951, "header": "tr|F1RL25-1|F1RL25_PIG Isoform 1 of Thioredoxin domain containing 11 OS=Sus scrofa OX=9823 GN=TXNDC11 PE=4 SV=3 CANONICAL=F1RL25-1" }, "locus": { "chromosome": "3", "start_pos": 31445525, "end_pos": 31376671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008652.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008652.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008429.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008429.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RD12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622177", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622177", "resource": "KEGG Pathway" }, { "id": "R-SSC-209968", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209968", "resource": "Reactome", "description": "Thyroxine biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IQE1-1", "protein_name": "Thioredoxin domain-containing protein 11", "gene_name": "txndc11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRRVRAELRQAVNQMARRPVKILCCGAVLLTCALLLPITLTCGRVKSVVSPARPPMRFFPAEAPVLDLFLGQLEEADRLREEADVSVLFFYAPWCAHSITARQHVQQVALRLADQVQFLAVNCWWHQGRCRKQKSFFQYPVIHLYYRRFGPIEYRGPVRSDYLESFILRVCAPLVYLPTAGALHSFLTQHQQGVVGYFRFSWSPQPAGYLTFLLSALHALRRDHQGAVRFAVVTNQAVAEGVSLREDESVYLHRRLNSSLVFPRAQRNFTAQAVSDWVLENKESVVYWIQPTRAKSYSLEAELQKGPALLTFLPHNPLTANQLLDQVSAVALLYQSGCGSSAPRLCCQCVPVCASSGVCEVCVQRSVCSGLHQSLQRLQSSASCWSVQSSYTPSGRLSVCCGASVCRGGASVCSGASISGLQCRSNRTLRFYMLDAELHRPLAHRLGARGGLHRPFITIINLRDETHHVLEPSGTLEGFIQNFSVPYSPLRRHLVGQEAPQQTQSLVQEVTSDSFLQTVMDSQRDVLLLYYSAWCGFCSVLNHVFLQLGRLFRGNRALTVARVNVGRNDLPWEFMVDHLPTVLFFPRHRKQMSVKFPENTPMTVPNLLRFVLQHTGHAPWEEQQSGEGEEPVRGEESVSLLGAELRALQQEVFSLHRVRERVSQQLDVLWRENRRLTLHTHTLQSQNQELQAQIHQLEALYREKTHQLTHTVHRLQELADASEELLKENTLLKVLLTALSDADHRQTTEDRQTTDHRQATEEHDENTHAEDESS", "length": 775 }, "evidence": [ { "id": "F1RL25", "url": "https://omabrowser.org/oma/group/F1RL25/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZFW0-1", "protein_name": "Thioredoxin domain containing 11", "gene_name": "TXNDC11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLCGGPGPGPASASRLRPRAAQMARRPELLCGAAIVLGCAFLVALKVTCSRAKDVTMPAKLPVNFFSTRSPVIDLFRGQLDYADHLRQDSEIVLYFFYAPWCGQSVAVREEIEHVANRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIHLYHRSFGPIEYKGPMSAVYIEKFVRRVMTPLLYISSRSKLLDFLSNYECKAEIIKASFEIPKEGIQLGRYLPHPGWSPGVVGYFEFNASPQPPGYLTFFSSALHSLKKDYLGTIRFGVITDKHVAEEISLVHPGSVYLHRHINTSLIYPNGIMNYTAENVCKWALENRELLIRWLRPHGGKSLLLNNELKKGPALLVFIPYNPLTEIQPLLDEITKVALEYHSCNKSQAAEPELQHLGNSDSPASDSSDPDAHMKSAETFLITKYPCCNTVVLPQWHSISRTHNVCELCINQTLGVKPDKVNVPHCNFFEIETALDSFYLQEHTFFQVVSNSIECSNFLSFYSPFSYYTACCRTVDRHFLSFISSEKTIFQTPKVAFSSHGKKDNADVQNSIPHIEDRNCFIPDLHISGTNITGLSCRTNKTLNLYLLDSNLFWIYAERLGASRSTHLKEFAAIVDLKEELHYVLDQNQSLTGSTLENFIKNFSILYSPLKRHLVDGSSVRVPAERVVVEVTTSTFHHVVFSSEKNVLLLYYAQWCGFCASLNHIFIQLARLLPPDHFTVARIDITENDLPWEFMTDRLPTILFFPHRRKDQSVKFPEDFPVSLPHLLKFILHHSSLSSSEPCTKECLHKETVLQQGHISHLEKEIQKLRSEIRALHRAHESLEAQLSKARREEHRLQQQKHTLEKQHKTLQLHSQQLQATYDQKNRELLEMAEKLQELADASENLLKENTLLRILVASRDGKLQSKDESKEALQSEQTVADDSSVLVSTALTTEEKRIDHVDTVATEHSSENRTE", "length": 947 }, "evidence": [ { "id": "F1RL25", "url": "https://omabrowser.org/oma/group/F1RL25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N1E5-1", "protein_name": "Thioredoxin domain containing 11", "gene_name": "TXNDC11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSECGGRGGGGGSSSSSDDAEDEGGGGGPAGSGSLSPAPAASSEGRLRRGLRGASLMARRRPELLCGAVALGCALLLALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDYAEHIRRDSEVVLLFFYAPWCGQSIAARAEIEQAASRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKDYLGTVRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVINYTAENICKWALENRETLVRWLWPHGGKSLLLNNELKKGPALFVFIPFNPLAESHPLIDEITEVALEYNNCHGDQVVERLLQHLRRVDAPAFKSLAPDPPARLPDPPLITASPCCNTVVLPRWHSISRTHNVCELCVNQTAGGLRPSSVSMPQCSFFEMAAALDSFYLKEQTFYHVVSDSIECSNFLSFYSPFSYYTACCRTINRGVAGFIDSEQGVFETPPVAFSSLEKKCEVESPGSVPHIEENRYLFPELETSSSSFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSAARVKEFATIVDVKEESHYILDPKQALMKFTLESFIQNFSVLYSPLKRHLIGSDSTQFTSQRLITEVTTDTFWEVVLQKQDVLLLYYAQWCGFCPALNHVFIQLARLLPSDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLSVKYPEDLPITLPNLLRFILHHSDPASDPRNLAGPPTAECLQNEAVLQQGHIAHLEREIRKLRAEIGTLQRAQVQVEARLASARRDEHRLLRQQHTLERQHDLLRLHSEQLQALYEHKTRELDEVARKLQELADASETLLTENTWLKILVATMEQKLEGRDGADDRVPPSKARSEHPEPPGAPRLPASTPLPANISSTLASEGSPENRTD", "length": 957 }, "evidence": [ { "id": "F1RL25", "url": "https://omabrowser.org/oma/group/F1RL25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PKC3-1", "protein_name": "Thioredoxin domain-containing protein 11", "gene_name": "TXNDC11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSECGGRGGGSSSSEDAEDEGGGGGGPAGSDCLSSSPTLATASSAGRLRRGLRGAFLMARQRPELLCGAVALGCALLLALKFTCSRAKDVIIPAKPPVSFFSLRSPVLDLFQGQLDYAEYVRRDSEVVLLFFYAPWCGQSIAARAEIEQAASRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIYLYHRSFGPIEYKGPMSAVYIEKFVRRVMKPLLYIPSQSELLDFLSNYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKALESTSSPRALVSFTGEWHLETKIYVLDYLGTVRFGVITNKHLAKLVSLVHSGSVYLHRHFNTSLVFPREVLNYTAENICKWALENQETLFRWLRPHGGKSLLLNNELKKGPALFLFIPFNPLAESHPLIDEITEVALEYNNCHGDQVVERLLQHLRRVDAPVLESLALEVPAQLPDPPTITASPCCNTVVLPQWHSFSRTHNVCELCVNQTSGGMKPSSVSVPQCSFFEMAAALDSFYLKEQTFYHVASDSIECSNFLTSYSPFSYYTACCRTISRGVSGFIDSEQGVFEAPTVAFSSLEKKCEVDAPSSVPHIEENRYLFPEVDMTSTNFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSTQVKEFAAIVDVKEESHYILDPKQALMKLTLESFIQNFSVLYSPLKRHLIGSGSAQFPSQHLITEVTTDTFWEVVLQKQDVLLLYYAPWCGFCPSLNHIFIQLARNLPMDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLSVKYPEDVPITLPNLLRFILHHSDPASSPQNVANSPTKECLQSEAVLQRGHISHLEREIQKLRAEISSLQRAQVQVESQLSSARRDEHRLRQQQRALEEQHSLLHAHSEQLQALYEQKTRELQELARKLQELADASENLLTENTWLKILVATMERKLEGRDGAESLAAQREVHPKQPEPSATPQLPGSSPPPANVSATLVSERNKENRTD", "length": 985 }, "evidence": [ { "id": "F1RL25", "url": "https://omabrowser.org/oma/group/F1RL25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K2W3-1", "protein_name": "Thioredoxin domain-containing protein 11", "gene_name": "Txndc11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSECGGRGGGGGNNSEDAEDEGGGPKGSGSLSPAGAAASLEGRIRRGLRGASLMARQRPELLCGAVALGCALLFALKFTCSRAKDVIIPAKPPVSFFSSRSPVLDLFQGQLDYADHVRQDSEVVVLFFYAPWCGQSIAARAEIEQAASRLSDQVLFVAINCWWNQGKCRKQKHFFYFPVIHLYHRSFGPIEYKGPMSAVYIEKFVRRAMKPLLYIPSQSALLDFLSSYEPGVLGYFEFSGSPQPPGYLTFFTSALHSLKKDYLGTVRFGVITDKHLARLVSLVHSGSVYLHRHFNTSLVFPREVMNFTAENIYKWASENQETLFRWLQPHGGKSLLLNNELKKGPALFLFIPFDPLAERHPLLDEITEVALEYNNCHGDQVVERLLQHLRRVEAPVLQSLAPELPASLPDTQLMAASPCCNTVVLPQGPALSRTHNVCELCVNQTVGGTRPSSVSVPQCSFFEMAAALDSFYLKEQTFYHVVSGSIECSNFLTSYSPFSYYTACCRTISRGMASFTGSEQNVLTAPAIEFSSLEKSCEATAPSSIPHIEENRYRFPQVGLTSTAFTGLSCRTNKTLNIYLLDSNLFWLYAERLGAPSSAPVKEFATIVDVKEESHYILDPKQALMKFTLESFIQNFSVLYSPLKRHLTGSDSAQFPTQHLITEVTTDTFWEVTLRKQDVLLLYYTQWCGFCPSLNHIFIQLARLLPEDTFTVARIDVSQNDLPWEFMVDRLPTVLFFPCNRKDLSVKYPGDLPITLPNLLRFILHHSDAASAPQDPGISPPTQDCVQSKAVLQREHISHVENAMQKLRSEMSSLRRTQEQVEGRLLSARRDGHRLLRRQRTLEQQHRLLRRHSQKLQALYLKKARELQELARASGTPLPEHTWLKILVATMERELEGQGGAKEPAPLGKARPNHSKSMGTTQLPGDTPPPSTTSSTLASETKHENRTD", "length": 948 }, "evidence": [ { "id": "F1RL25", "url": "https://omabrowser.org/oma/group/F1RL25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RL25", "url": "https://www.uniprot.org/uniprotkb/F1RL25" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RL25", "url": "https://www.uniprot.org/uniprotkb/F1RL25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 636, "end_pos": 638, "annotation": "n_glycosylation_sequon" }, { "start_pos": 935, "end_pos": 937, "annotation": "n_glycosylation_sequon" }, { "start_pos": 948, "end_pos": 950, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RL25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL25" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 211, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 240, "end_pos": 242 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 636, "end_pos": 638 }, { "start_pos": 935, "end_pos": 937 }, { "start_pos": 948, "end_pos": 950 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGV3-1", "uniprot_ac": "F1RGV3", "uniprot_id": "F1RGV3_PIG", "mass": { "chemical_mass": 30485.0, "monoisotopic_mass": 30485.0 }, "refseq": {}, "gene_names": [ { "name": "JMJD8", "type": "recommended", "evidence": [ { "id": "F1RGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGV3" } ] } ], "protein_names": [ { "name": "JmjC domain-containing protein 8", "type": "recommended", "evidence": [ { "id": "F1RGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGV3/entry#names_and_taxonomy" } ] }, { "name": "Jumonji domain-containing protein 8", "type": "synonym", "evidence": [ { "id": "F1RGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGV3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGV3", "url": "https://www.uniprot.org/uniprotkb/F1RGV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "JMJD8", "url": "https://www.uniprot.org/uniprotkb/F1RGV3", "locus": { "chromosome": "3", "start_pos": 41093614, "end_pos": 41090788, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007988", "url": "https://www.ensembl.org/id/ENSSSCG00000007988" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007988", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007988", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041667", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041667", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KEPHFHP", "url": "https://omabrowser.org/oma/group/KEPHFHP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12480", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12480", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12480:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12480:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287B738", "url": "https://www.uniprot.org/uniprotkb/A0A287B738", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B738-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B738-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RD83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RD83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGV3", "url": "https://www.uniprot.org/uniprotkb/F1RGV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGV3-1", "url": "https://www.uniprot.org/uniprotkb/F1RGV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATGARPFLLLALWALARPARSPGEEGDGGWRRREPAAPAVVVEEERCTVERRADLSYAEFVQHYAFSRPVILQGLTDNAKFRALCSRERLLASFADSMVRLSTANTYSYQKVDLPFQEYVEQMLHPQDPFSMGNDTLYFFGDNNFTEWASLFQHYSPPPFGLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLRDTYPALAPSARPLECTIQAGEVLYFPDRWWHATLNLDISVFISTFLS", "length": 269, "header": "tr|F1RGV3-1|F1RGV3_PIG Isoform 1 of JmjC domain-containing protein 8 OS=Sus scrofa OX=9823 GN=JMJD8 PE=4 SV=3 CANONICAL=F1RGV3-1" }, "isoforms": [ { "isoform_ac": "A0A287B738-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B738/entry", "sequence": { "sequence": "MATGARPFLLLALWALARPARSPGEEGDGGWRRREPAAPAVVVEEERCTVERRADLSYAEFVQHYAFSRPVILQGLTDNAKFRALCSRERLLASFADSMVRLSTANTYSYQKVDLPFQEYVEQMLHPQDPFSMGNDTLYFFGDNNFTEWASLFQHYSPPPFGLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKVLYFPDRWWHATLNLDISVFISTFLS", "length": 224, "header": "tr|A0A287B738-1|A0A287B738_PIG Computationally mapped isoform of Jumonji domain containing 8 OS=Sus scrofa OX=9823 GN=JMJD8 PE=4 SV=2 CANONICAL=F1RGV3-1" }, "locus": { "chromosome": "3", "start_pos": 41092464, "end_pos": 41090877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049958.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049958.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051896.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051896.2" } ] } }, { "isoform_ac": "A0A5G2RD83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD83/entry", "sequence": { "sequence": "MATGARPFLLLALWALARPARSPGEEGDGGCYAFSRPVILQGLTDNAKFRALCSRERLLASFADSMVRLSTANTYSYQKVDLPFQEYVEQMLHPQDPFSMGNDTLYFFGDNNFTEWASLFQHYSPPPFGLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLRDTYPALAPSARPLECTIQAGEVLYFPDRWWHATLNLDISVFISTFLS", "length": 236, "header": "tr|A0A5G2RD83-1|F1RGV3_PIG Computationally mapped isoform of JmjC domain-containing protein 8 OS=Sus scrofa OX=9823 GN=JMJD8 PE=4 SV=1 CANONICAL=F1RGV3-1" }, "locus": { "chromosome": "3", "start_pos": 41092464, "end_pos": 41090877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082118.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082118.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074437.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074437.1" } ] } }, { "isoform_ac": "F1RGV3-1", "url": "https://www.uniprot.org/uniprotkb/F1RGV3/entry", "sequence": { "sequence": "MATGARPFLLLALWALARPARSPGEEGDGGWRRREPAAPAVVVEEERCTVERRADLSYAEFVQHYAFSRPVILQGLTDNAKFRALCSRERLLASFADSMVRLSTANTYSYQKVDLPFQEYVEQMLHPQDPFSMGNDTLYFFGDNNFTEWASLFQHYSPPPFGLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLRDTYPALAPSARPLECTIQAGEVLYFPDRWWHATLNLDISVFISTFLS", "length": 269, "header": "tr|F1RGV3-1|F1RGV3_PIG Isoform 1 of JmjC domain-containing protein 8 OS=Sus scrofa OX=9823 GN=JMJD8 PE=4 SV=3 CANONICAL=F1RGV3-1" }, "locus": { "chromosome": "3", "start_pos": 41092464, "end_pos": 41090877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008753.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008753.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008529.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008529.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RD83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD83" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YZ83-1", "protein_name": "Jumonji domain containing 8", "gene_name": "JMJD8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAARRLLAVLLPLAWARARLAGGAGGWQAGDVPEEQRCTVDRTDGSVSPAQFLQRFAFSRPVVLRGVTDNSAFQALCTRQKLLAAYGERLVRLSTANTYSYRKVDVPFQEYVERLLKPQDPAALGSDTLYFFGDNNFTEWGSLFQHYVPPPFRIPGTSGAYSFGIAGSGSGVPFHWHGPGYSEVIFGRKRWFLYPPDKTPHFHPNETTLAWLQHTYPTLPPEERPLECTIRPGEVLYFPDRWWHATLNLDTSVFISTFLG", "length": 261 }, "evidence": [ { "id": "F1RGV3", "url": "https://omabrowser.org/oma/group/F1RGV3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3TA59-1", "protein_name": "JmjC domain-containing protein 8", "gene_name": "Jmjd8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGRRGLLLLFVLWMMVTVILPASGEGGWKQNGLGIAAAVMEEERCTVERRAHITYSEFMQHYAFLKPVILQGLTDNSKFRALCSRENLLASFGDNIVRLSTANTYSYQKVDLPFQEYVEQLLQPQDPASLGNDTLYFFGDNNFTEWASLFQHYSPPPFRLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLALSARPLECTIQAGEVLYFPDRWWHATLNLDTSVFISTFLG", "length": 269 }, "evidence": [ { "id": "F1RGV3", "url": "https://omabrowser.org/oma/group/F1RGV3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AY40-1", "protein_name": "JmjC domain-containing protein 8", "gene_name": "Jmjd8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAGRFGLLLLIVLWTMVTVVLPASGEGGWKQSRLGTEAAVMEEERCTVERRAHLTYSEFMQHYAFLKPVILQGLTDNSKFRALCSRENLLASFGDNVVRLSTANTYSYQKVDLPFQEYVEQLLHPQDPESLGNDTLYFFGDNNFTEWAPLFQHYRPPPFRLLGTTPAYSFGIAGAGSGVPFHWHGPGFSEVIYGRKRWFLYPPEKTPEFHPNKTTLAWLLEIYPSLAPSARPLECTIQAGEALYFPDRWWHATLNLDTSVFISTFLG", "length": 269 }, "evidence": [ { "id": "F1RGV3", "url": "https://omabrowser.org/oma/group/F1RGV3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96S16-1", "protein_name": "JmjC domain-containing protein 8", "gene_name": "JMJD8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"GO:0000987", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000987", "evidence": [ { "database": "UniProtKB", "id": "F1RGV3", "url": "https://www.uniprot.org/uniprotkb/F1RGV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGV3" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 269, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 145, "end_pos": 147 }, { "start_pos": 214, "end_pos": 216 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"gene_names": [ { "name": "FAM98C", "type": "recommended", "evidence": [ { "id": "F1RI46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI46" } ] }, { "name": "FAM98C", "type": "synonym", "evidence": [ { "id": "XP_003127161", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127161" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 98 member C", "type": "synonym", "evidence": [ { "id": "F1RI46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI46/entry#names_and_taxonomy" } ] }, { "name": "protein FAM98C", "type": "synonym", "evidence": [ { "id": "XP_003127161", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127161" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI46", "url": 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHWTERA", "url": "https://omabrowser.org/oma/group/FHWTERA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RI46", "url": "https://www.orthodb.org/?gene=F1RI46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31353:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31353:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10239", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10239", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127161", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127161", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RGF5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RGF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI46", "url": "https://www.uniprot.org/uniprotkb/F1RI46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI46-1", "url": "https://www.uniprot.org/uniprotkb/F1RI46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGAEAEEREWAALAGDLLALGYEGFPERASPGPSCPDFRALCARLAAELATLDALEREKEEGTEALSAGDGPGAEEEFLRQLAGLLRELHCPDRELCGRDCASSLRKPGARLRLLRFLCSELQAARLLHLQPKLDPSLEPFGGEWAGEGAEEESGLVQELVLTLQALGLPRPPRGTPASQLLRELHAKISELLPSLPPGFLQPLLSYPLDAPRWEALESLSQSLQDQYCCRRCLLLKRLDLTTSAFHWSERAEAQGEAMKAVLIPIREALTPESDVSVAHVLAARADLSRLVPATSKTARRGTCCAINKVLMGSVPDRGGRPDELEPPMPSWQSRREDGGGRKAGRQCWGRKKKKK", "length": 357, "header": "tr|F1RI46-1|F1RI46_PIG Isoform 1 of Family with sequence similarity 98 member C OS=Sus scrofa OX=9823 GN=FAM98C PE=3 SV=1 CANONICAL=F1RI46-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RGF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RGF5/entry", "sequence": { "sequence": "MEGAEAEEREWAALAGDLLALGYEGFPERASPGPSCPDFRALCARLAAELATLDALEREKEEGTEALSAGDGPGAEEEFLRQLAGLLRELHCPDRELCGRDCASSLRKPGARLRLLRFLCSELQAARLLHLQPKLDPSLEPFGGEWAGEGAEEESGLVQELVLTLQALGLPRPPRGTPASQLLRELHAKEALESLSQSLQDQYCCRRCLLLKRLDLTTSAFHWSERAEVLMGSVPDRGGRPDELEPPMPSWQSRREDGGGRKAGRQCWGRKKKKK", "length": 275, "header": "tr|A0A5G2RGF5-1|F1RI46_PIG Computationally mapped isoform of Family with sequence similarity 98 member C OS=Sus scrofa OX=9823 GN=FAM98C PE=3 SV=1 CANONICAL=F1RI46-1" }, "locus": { "chromosome": "6", "start_pos": 47319301, "end_pos": 47315452, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079808.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079808.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070289.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070289.1" } ] } }, { "isoform_ac": "F1RI46-1", "url": "https://www.uniprot.org/uniprotkb/F1RI46/entry", "sequence": { "sequence": "MEGAEAEEREWAALAGDLLALGYEGFPERASPGPSCPDFRALCARLAAELATLDALEREKEEGTEALSAGDGPGAEEEFLRQLAGLLRELHCPDRELCGRDCASSLRKPGARLRLLRFLCSELQAARLLHLQPKLDPSLEPFGGEWAGEGAEEESGLVQELVLTLQALGLPRPPRGTPASQLLRELHAKISELLPSLPPGFLQPLLSYPLDAPRWEALESLSQSLQDQYCCRRCLLLKRLDLTTSAFHWSERAEAQGEAMKAVLIPIREALTPESDVSVAHVLAARADLSRLVPATSKTARRGTCCAINKVLMGSVPDRGGRPDELEPPMPSWQSRREDGGGRKAGRQCWGRKKKKK", "length": 357, "header": "tr|F1RI46-1|F1RI46_PIG Isoform 1 of Family with sequence similarity 98 member C OS=Sus scrofa OX=9823 GN=FAM98C PE=3 SV=1 CANONICAL=F1RI46-1" }, "locus": { "chromosome": "6", "start_pos": 47319301, "end_pos": 47315452, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003282.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003282.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003200.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003200.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 177, "start_aa": "Thr", "end_pos": 177, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr177", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., 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"MAMTSPWGGVYGGPAPGARRPCEGSDATQRLPPSPRALPSSCQQASGQLEQAALGQQALGTVVDVLQSARGLGQRSPRLCLFDPRTRQLEQAAATREGEECEVERPQGIPGDDTALNGIRLHCARGNAELNTHVVESQSGRWGVWSEPLWCPGGGFLVAFSLRVEAPVTPGDNTAANNVRFRCSDGTELQGPGLAWGEFGDWSEPCPKGVCGLQTKIERPRGLRDDTAINDARFFCCRN", "length": 239, "header": "tr|A0A5G2RI62-1|F1RFV3_PIG Computationally mapped isoform of Vitelline membrane outer layer protein 1 homolog OS=Sus scrofa OX=9823 GN=VMO1 PE=1 SV=1 CANONICAL=F1RFV3-1" }, "locus": { "chromosome": "12", "start_pos": 52109917, "end_pos": 52104599, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073505.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073505.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071187.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071187.1" } ] } }, { "isoform_ac": "F1RFV3-1", "url": "https://www.uniprot.org/uniprotkb/F1RFV3/entry", "sequence": { "sequence": 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"tr|F1RF31-1|F1RF31_PIG Isoform 1 of Ring finger and SPRY domain containing 1 OS=Sus scrofa OX=9823 GN=RSPRY1 PE=4 SV=2 CANONICAL=F1RF31-1" }, "isoforms": [ { "isoform_ac": "A0A8D1AWY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1AWY4/entry", "sequence": { "sequence": "MIVFGWAVFLVSRSLGQGLLLTLEEHIAHFLGTRGATATMGNSCICRDDSGAEDAVDTQQQQAENSAVPTADTRNQPRDPVRPPRRGRGPHEPRRKKQNVDGLVLDTLAVIRTLVDNDQEPPYSMITLHEMAETDEGWLDVVQSLIRVIPLEDPLGPAVITLLLDECPLPTKDALQKLTEILNLNGEVACQDSGHPAKHRNTSAVLGCLAEKLAGPASIGLLSPGILEYLLQCLKLQSHPTVMLFALIALEKFAQTSENKLTISESSISDRLITLESWADDPDYLKRQVGFCAQWSLDNLFLKEGRQLTYEKVDLNSIRAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGVWYYEVTVVTSGVMQIGWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHLHPCWKEGDTVGFLLDLNEKQMIFFLNGNQLPPEKQVFSSTVSGFFAAASFMSYQQSEEKIILPRHRRLALLKQVSIRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRVRQISHIS", "length": 548, "header": "tr|A0A8D1AWY4-1|F1RF31_PIG Computationally mapped isoform of Ring finger and SPRY domain containing 1 OS=Sus scrofa OX=9823 GN=RSPRY1 PE=4 SV=1 CANONICAL=F1RF31-1" }, "locus": { "chromosome": "6", "start_pos": 19203352, "end_pos": 19168707, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075186.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075186.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060942.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060942.1" } ] } }, { "isoform_ac": "F1RF31-1", "url": "https://www.uniprot.org/uniprotkb/F1RF31/entry", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GIPNCEV", "url": "https://omabrowser.org/oma/group/GIPNCEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954554", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954554", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1R236", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R236", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1R236-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R236-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI98", "url": "https://www.uniprot.org/uniprotkb/F1RI98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI98-1", "url": "https://www.uniprot.org/uniprotkb/F1RI98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEEAGEAPGLGRPAAPKDFHFYHVDLYDSEDRLQIFPEGNARMRREVVQAEMTNEPRAAVKGKAPRDLEEEVDELVHLYGLEDDHELGDAFVDESMPRIEVSEYPPYGMTGREAAREQRDWRLSGEEANAEDLGLGGWGSADQCQDLREAYRYTHGRASEEYECYVIPEEEDEDEAADVFCVTCKTPVRALEVSDEHKEHEVTPLHKALESAKDEIHKNMYKLEKQIIEMENFASHLEEVFITVEENFGRQEQNFESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDTCKELMETIEEMCHEEKVDFIKDAVAMADRLGKFLKTKTDVEISTQPDFDDQTLDFSDVEQLMDSLNTIPAPSAPVINPQAPNSATGSSVRVCWSLYSDDTVESYQLSYRPVRDSSPEKDQAEFTMTIKETYCSVTNLVPNTQYEFWVTARNRAGLSPASERAVYMTAPSPPTIKSREIRSCEEAALICWESGNLNPVDSYTVELSQAEAPGASGVTESVVGIPTCECLVQLQPRQSYIIYVRALNVGGPSARSQPATVHTTGSYFHLNEHTCHPWLTISEDGLTVVRSERRAPASELLSSDTRFTRCVAVMGNLIPVRGRHYWEVEVDECLDYTVGVAFEDVPKQEDLGANHLSWCMRHTFASSRHKYEFLHNKTTPDIRITVSPKKIGILLDYENSKLSFFNVGLSQHLYTFSCQLHQFVHPCFSLEKPGCLKIHNGISMPKHVTFY", "length": 750, "header": "tr|F1RI98-1|F1RI98_PIG Isoform 1 of Fibronectin type III and SPRY domain-containing protein 2 OS=Sus scrofa OX=9823 GN=FSD2 PE=4 SV=2 CANONICAL=F1RI98-1" }, "isoforms": [ { "isoform_ac": "A0A8D1R236-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R236/entry", "sequence": { "sequence": "MEEEAGEAPGLGRPAAPKDFHFYHVDLYDSEDRLQIFPEGNARMRREVVQAEMTNEPRAAVKGKAPRDLEEEVDELVHLYGLEDDHELGDAFVDESMPRIEVSEYPPYGMTGREAAREQRDWRLSGEEANAEDLGLGGWGSADQCQDLREAYRYTHGRASEEYECYVIPEEEDEDEAADVFCVTCKTPVRALEVSDEHKEHEVTPLHKALESAKDEIHKNMYKLEKQIIEMENFASHLEEVFITVEENFGRQEQNFESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDTCKELMETIEEMCHEEKVDFIKDAVAMADRLGKFLKTKTDVEISTQPDFDDQTLDFSDVEQLMDSLNTIPAPSAPVINPQAPNSATGSSVRVCWSLYSDDTVESYQLSYRPVRDSSPEKDQAAPSPPTIKSREIRSCEEAALICWESGNLNPVDSYTVELSQAEAPGASGVTESVVGIPTCECLVQLQPRQSYIIYVRALNVGGPSARSQPATVHTTGSYFHLNEHTCHPWLTISEDGLTVVRSERRAPASELLSSDTRFTRCVAVMGNLIPVRGRHYWEVEVDECLDYTVGVAFEDVPKQEDLGANHLSWCMRHTFASSRHKYEFLHNKTTPDIRITVSPKKIGILLDYENSKLSFFNVGLSQHLYTFSCQLHQFVHPCFSLEKPGCLKIHNGISMPKHVTFY", "length": 705, "header": "tr|A0A8D1R236-1|F1RI98_PIG Computationally mapped isoform of Fibronectin type III and SPRY domain-containing protein 2 OS=Sus scrofa OX=9823 GN=FSD2 PE=4 SV=1 CANONICAL=F1RI98-1" }, "locus": { "chromosome": "7", "start_pos": 52193446, "end_pos": 52165996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068273.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068273.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069350.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069350.1" } ] } }, { "isoform_ac": "F1RI98-1", "url": "https://www.uniprot.org/uniprotkb/F1RI98/entry", "sequence": { "sequence": "MEEEAGEAPGLGRPAAPKDFHFYHVDLYDSEDRLQIFPEGNARMRREVVQAEMTNEPRAAVKGKAPRDLEEEVDELVHLYGLEDDHELGDAFVDESMPRIEVSEYPPYGMTGREAAREQRDWRLSGEEANAEDLGLGGWGSADQCQDLREAYRYTHGRASEEYECYVIPEEEDEDEAADVFCVTCKTPVRALEVSDEHKEHEVTPLHKALESAKDEIHKNMYKLEKQIIEMENFASHLEEVFITVEENFGRQEQNFESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDTCKELMETIEEMCHEEKVDFIKDAVAMADRLGKFLKTKTDVEISTQPDFDDQTLDFSDVEQLMDSLNTIPAPSAPVINPQAPNSATGSSVRVCWSLYSDDTVESYQLSYRPVRDSSPEKDQAEFTMTIKETYCSVTNLVPNTQYEFWVTARNRAGLSPASERAVYMTAPSPPTIKSREIRSCEEAALICWESGNLNPVDSYTVELSQAEAPGASGVTESVVGIPTCECLVQLQPRQSYIIYVRALNVGGPSARSQPATVHTTGSYFHLNEHTCHPWLTISEDGLTVVRSERRAPASELLSSDTRFTRCVAVMGNLIPVRGRHYWEVEVDECLDYTVGVAFEDVPKQEDLGANHLSWCMRHTFASSRHKYEFLHNKTTPDIRITVSPKKIGILLDYENSKLSFFNVGLSQHLYTFSCQLHQFVHPCFSLEKPGCLKIHNGISMPKHVTFY", "length": 750, "header": "tr|F1RI98-1|F1RI98_PIG Isoform 1 of Fibronectin type III and SPRY domain-containing protein 2 OS=Sus scrofa OX=9823 GN=FSD2 PE=4 SV=2 CANONICAL=F1RI98-1" }, "locus": { "chromosome": "7", "start_pos": 52193446, "end_pos": 52165996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002022.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002022.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001973.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001973.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1R236", "url": "https://www.uniprot.org/uniprotkb/A0A8D1R236" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A1L4K1-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 2", "gene_name": "FSD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEESGEELGLDRSTPKDFHFYHMDLYDSEDRLHLFPEENTRMRKVVQAEMANESRGAGDGKAQRDLQEEVDELVHLYGLEDDHELGDEFVDENIPRTGVSEYPPYMMKRRDPAREQRDWRLSGEAAEAEDLGFGGWGSAGQCQDLREAYRYTHGRASEEYECYVIPEEEDEEEAADVFCVTCKTPIRAFQKVFDEHKEHEVIPLNEALESAKDEIHKNMYKLEKQIIEMENFANHLEEVFITVEENFGKQEQNFESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDTCKELMETIEEMCHEEKVDFIKDAVAMADRLGKFLKTKTDVEISAQPEFEDQTLDFSDVEQLMGSINTIPAPSAPVINPQVPNSATGSSVRVCWSLYSDDTVESYQLSYRPVQDSSPGTDQAEFTVTVKETYCSVTNLVPNTQYEFWVTAHNRAGPSPSSERAVYMTAPSPPIIKTKEIRSCEEAVLICWESGNLNPVDSYTVELTQAESPEASGVTESVVGIPTCESVVQLQPGRSYIIYVRALNMGGPSVRSEPATVHTIGSYFRLNKDTCHPWLTISEDGLTAVRSERRTPARELSPSDTHFTRCVAVMGNLIPVRGHHYWEVEVDEHLDYRVGVAFADVRKQEDLGANCLSWCMRHTFASSRHKYEFLHNRTTPDIRITVPPKKIGILLDYEHSKLSFFNVDLSQHLYTFSCQLHEFVHPCFSLEKPGCLKVHNGISMPKHVTFY", "length": 749 }, "evidence": [ { "id": "F1RI98", "url": "https://omabrowser.org/oma/group/F1RI98/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D4ADN6-1", "protein_name": "Fibronectin type III and SPRY domain containing 2", "gene_name": "Fsd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEEAGEEPGLGRSTAPRDFHFYHMDLYDSEDRLQLFPGESSRTRREVTQAELTNEPRGAGDSKNLQKEVDALVHLYGLEDEHELGGEFVDEHRLGTLGYPYGMRRRDPGREQRDWGLSGEAAEAEDLCYGVQGPPDQCQDLREAYRYTHGRASEEYECYVIPEEEDEEEPADVFCVTCKTPVRTVEKDFDIHKEHEVTPINKALEHAKDEIHKNMCKLEQQIIEMENFASHLEEVFITVEENFGRQEQNFECHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVSCGENLDACRELMETIEEMCHEEKVDFLKDAVAMTDRLGKFLKTKTDVELSAKPEFEDQTLDFSDVEQLMDSINTVPAPSAPVINPQAPNSATGSSVRVCWSLYSDDTVESYQLSYRPVQDSSPGKDQAEFTMTVKETYCSVKNLEPNTQYEFWVIAQNRTGPSPSSEHVVYMTAPSPPSIKTEAIRSCEEAVLICWESGNLNPVDSYTVELIQAETPEASGVTESVVGIPTCESLIQLQPRHSYTIYVRALNVGGTSARSKPATVHTTGSYFQLNKDTCHPWLTISEDGFTVVRSEKKRSFRRELPPSKAQFSRCVAVMGNLIPVRGRHYWEVEVDEHLDYTVGVACEDVPKQEDLGANRLSWCMRHTFASTRHRYEFLHNGTTPDIRITVAPKKIGVLLDYEDSKLSFFNVDIAQHLYTFSCPLHQFVHPCFSLEKSGGLKICNGISAPKHVTFF", "length": 746 }, "evidence": [ { "id": "F1RI98", "url": "https://omabrowser.org/oma/group/F1RI98/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BJZ1-1", "protein_name": "Fibronectin type III and SPRY domain containing 2", "gene_name": "FSD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEGAGEAPGLGRSAASKDFRFYHMDLYDSQDRLQIFPEESTRMRREGVQAEMTHEPMRGGVKVKAPRDLGEEVDELVHLYGLEDDHELGDEFIEENTPRIEVSEYPSYMMMGSEQRDWRPTGEAAQGEDLGFMGWGSAGQCQDLREAYRYSHGRASEEYECYVIPEEEDEEEAADVFCVTCKTPIRASEKDQDEHKQHEVTPLSKALESAKDEIHKNMYKLEKQIIEMENFASHLEEVFITVEENFGRQEQNFESHYNEILETLAQKYEEKIQALGEKKKEKLEALYGQLVNCGENLDTCKELMETIEEMCHEEKVDFIKDAVAMADRLGKFLKTKTDEEISAQPDFEDQTLDFSDVEELMGSINTIPAPSAPVINPQAPNSATGSSVRVCWSLYSDDTVESYQLSYRPVQDGSPGKEQTEVTMTIKETYCSVTNLLPNTQYEFWVTAQNRAGLSPTSERAVYMTAPCPPIIKSKEIRSCEEAALISWESGNLNPVDSYTVELTQAETPGASGVTESVVGIPTCECLVQLQPRQNYTIYVRALNVGGPSARSEPATVHTTGSYFSLDEHTCHPRLTVSEDGLTVVRSERRGPAKEPVPSDAQFTRCAAVMGNLIPVRGRHYWEVEVDECLDYTVGVAFEDVPRQEDLGANRLSWCMRHAFASSRHKYEFLHNKMTPDIRITVPPKKIGILLDYENAKLSFFNVDISQHLYTFSCQLHQFVHPCFSLEKPGCLKIYNGISMPKHVTFY", "length": 748 }, "evidence": [ { "id": "F1RI98", "url": "https://omabrowser.org/oma/group/F1RI98/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BZ52-1", "protein_name": "Fibronectin type III and SPRY domain-containing protein 2", "gene_name": "Fsd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEEAEEESGLGRSAAPKDFHFYHMDLYDSEDRLQLFPGDSSRIRREVTQAEDDRELGDEFVDEHRLGTLGYPSYGMRRRDPGREPRDWGEAAEAEDLGYGGGQGPLDQCQDLREAYRYTHGRASEEYECYVIPEEEDEEEPADVFCITCKTPVRTVEKDFDTHKEHEVTPISKALEHAKDEVHKNMCKLEQQIIEMENFASHLEEVFITVEENFGRQEQNFECHYNGILETLAQKYEEKIQALGEKKREKLEALYGQLVSCGENLDACRELMETVEEMCHEEKVEFLKDAVAMTDRLGKFLKTKTDVELSAQPEFEDQTLDFSDVEQLMDAINTIPAPSAPVINPQAPNSATGSSVRVCWSLYSDDTVESYQLSYRPVQDSSSGKDRAEFTMMVKETYCSVTNLEPNTQYEFWVIAQNRTGPSPCSEHAVYMTAPSPPSIKTEAIRSCEEAVLICWESGNLNPVDSYTVELIQAETPEASGVTESVVGIPTCESLIQLQPRHSYTIYVRALNVGGTSARSEPATVHTTGSYFQLNKDTCHPWLTISEDGFTVVRSEKKSFRKELPPSKTQFTRCVAVMGNLIPVRGRHYWEVEVAEHLDYTVGVACEDVPKQEDLGANSLSWCMRHTFVSKRHRYEFLHNKMTPDIRITVAPRKIGVLLDYENAKLSFFNVDIAQHLYTFSCQLHQFVHPCFSLEKSGCLKICNGISMPKHVTFF", "length": 716 }, "evidence": [ { "id": "F1RI98", "url": "https://omabrowser.org/oma/group/F1RI98/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RI98", "url": "https://www.uniprot.org/uniprotkb/F1RI98" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1RI98", "url": "https://www.uniprot.org/uniprotkb/F1RI98" } ], "pmid": "" }, { "name": "sarcoplasmic reticulum", "id": "GO:0016529", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016529", "evidence": [ { "database": "UniProtKB", "id": "F1RI98", "url": "https://www.uniprot.org/uniprotkb/F1RI98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 675, "end_pos": 677, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI98" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 547, "end_pos": 746, "start_aa": "Asn", "end_aa": "His", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI98" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 376, "end_pos": 471, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 675, "end_pos": 677 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJU1-1", "uniprot_ac": "F1RJU1", "uniprot_id": "F1RJU1_PIG", "mass": { "chemical_mass": 42508.0, "monoisotopic_mass": 42508.0 }, "refseq": { "ac": "XP_003132863", "name": "BTB/POZ domain-containing protein KCTD9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132863" }, "gene_names": [ { "name": "KCTD9", "type": "recommended", "evidence": [ { "id": "F1RJU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJU1" } ] }, { "name": "KCTD9", "type": "synonym", "evidence": [ { "id": "XP_003132863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132863" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein KCTD9", "type": "recommended", "evidence": [ { "id": "F1RJU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJU1/entry#names_and_taxonomy" } ] }, { "name": "BTB/POZ domain-containing protein KCTD9", "type": "synonym", "evidence": [ { "id": "XP_003132863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132863" } ] } ], "function": [ { "annotation": "Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex, which mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.", "evidence": [ { "database": "UniProtKB", "id": "F1RJU1", "url": "https://www.uniprot.org/uniprotkb/F1RJU1#function" }, { "database": "UniProtKB", "id": "ARBA00053523", "url": "https://www.uniprot.org/uniprotkb/ARBA00053523#function" }, { "database": "UniProtKB", "id": "A0A8D1Y843", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y843#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJU1", "url": "https://www.uniprot.org/uniprotkb/F1RJU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCTD9", "url": "https://www.uniprot.org/uniprotkb/F1RJU1", "locus": { "chromosome": "14", "start_pos": 9455071, "end_pos": 9517691, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009652", "url": "https://www.ensembl.org/id/ENSSSCG00000009652" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009652", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009652", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17073", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17073", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18368", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18368", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521867", "url": "https://www.ncbi.nlm.nih.gov/gene/100521867", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021789", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021789", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036572", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036572", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521867", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521867", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YACIKNA", "url": "https://omabrowser.org/oma/group/YACIKNA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJU1", "url": "https://www.orthodb.org/?gene=F1RJU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14136:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14136:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11834", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11834", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132863", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1Y843", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y843", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y843-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y843-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJU1", "url": "https://www.uniprot.org/uniprotkb/F1RJU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJU1-1", "url": "https://www.uniprot.org/uniprotkb/F1RJU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASNKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLSGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 389, "header": "tr|F1RJU1-1|F1RJU1_PIG Isoform 1 of BTB/POZ domain-containing protein KCTD9 OS=Sus scrofa OX=9823 GN=KCTD9 PE=1 SV=3 CANONICAL=F1RJU1-1" }, "isoforms": [ { "isoform_ac": "A0A8D1Y843-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y843/entry", "sequence": { "sequence": "VRQISLVVAVYGTLSDLLSVASNKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLSGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 379, "header": "tr|A0A8D1Y843-1|F1RJU1_PIG Computationally mapped isoform of BTB/POZ domain-containing protein KCTD9 OS=Sus scrofa OX=9823 GN=KCTD9 PE=1 SV=1 CANONICAL=F1RJU1-1" }, "locus": { "chromosome": "14", "start_pos": 9505916, "end_pos": 9455182, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089856.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089856.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073024.1" } ] } }, { "isoform_ac": "F1RJU1-1", "url": "https://www.uniprot.org/uniprotkb/F1RJU1/entry", "sequence": { "sequence": "MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASNKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLSGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 389, "header": "tr|F1RJU1-1|F1RJU1_PIG Isoform 1 of BTB/POZ domain-containing protein KCTD9 OS=Sus scrofa OX=9823 GN=KCTD9 PE=1 SV=3 CANONICAL=F1RJU1-1" }, "locus": { "chromosome": "14", "start_pos": 9517462, "end_pos": 9455182, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010582.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010582.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010306.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010306.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1Y843", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y843" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521867", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521867", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M937-1", "protein_name": "BTB/POZ domain-containing protein KCTD9", "gene_name": "KCTD9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "VAKGGESEWVEGGEGREKKKVGGETGGRVATHSGSGGGNAMRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASNKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKLPEGLSGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 429 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B9A0N7-1", "protein_name": "BTB domain-containing protein", "gene_name": "Dmel\\CG14647", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNSDLKESGSGARKDDAAPAAGDFVAASGFAPNRWVKLNVGGQIYATTIDTLVGREPDSMLARMFLQNGSMKPSERDEQGAYLIDRSPRYFEPIINYLRHGQFVCDSNISVLGVLEEARFFGIFSLVTHLEERLGQQETPLGDRPLTRNDVIKAIIQTSVITELRFQGVNLSGADLRKLDFRNINFKYANMSHCNLSHTNLNYCCLERADLQYANLECAQLVSVRGLCANMEGANLRGCNFEDPTGVRTNLEGVNLKGACLESSNMAGVNLRVANLKNANMKNCNLRAAVLAGADLEKCNLSGSDLQEANLRGANLKDAELTLMVTPLHMSQAIR", "length": 335 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "D3ZE91-1", "protein_name": "BTB/POZ domain-containing protein KCTD9", "gene_name": "Kctd9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRRVTLFLNGSPRNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDARPPGGLLGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 389 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1Q5M1-1", "protein_name": "BTB/POZ domain-containing protein KCTD9", "gene_name": "kctd9a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRRVTLFVNGTSKNGKVVAVYGTLSDLLTLASNKLGLRACNLYNGKGGLIDDIALIRDDDVLYVSEGDAFIDPHSEGKMSDDISGSHTDWLTLNIGGRLFTTTRSTLVSKEPDSMLAHMFREKDVWGNKQDERGAFLIDRSPEYFEPILNYLRHGQIIINDGINLLGVLEEARFFGIEQLAEQLEVAIKNSHPPEDHSPLSRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLTYANLCCSNLERADLSGANLDGANLQGVKMLCSNAEGASLKGCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 389 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q54EU5-1", "protein_name": "BTB/POZ domain-containing protein", "gene_name": "kctd9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSSMTDIRKRVTVFQNGKRVGGKAISLPKKWSEFLKIVSKKLNIPASRIYNEDGGEIDEIESIVAKEILYASCGEHFIHIPKDIGYFGQPTIPNPYLIGPSPPPNIFPFHNGGGSGGIDIVPSGSSSTNSTTTTTTTTSSSSSSSNTTTSPNNLLTSPSIVNTGVGGGGVNHNMIQLLGGNGCITGLSSCGAIINNNEWISLNVGGRIFSTTRSTIIRDKDSMLAKMFSESWDSAKDINGAYLIDRSPDYFTPILNYLRCGTIVIDESLNVEGVYQEARFFNITGMLDKLASLVERKSRSTDVFTRKDVISILLTSSSNSSLRCQGLNLAGVDLSKLDLRNINFKMTNFKETNLSKCNLDNALLQEADLSGANLTGASLRGSNLTGANLEDCILKGANFEDRGGQRATLENVNFKNASLEEANFSGANLRVCNFKSANLENCNFRGADLAGANLEKCNFRGANLHKANLIGVNLKGANFDIRTVSSR", "length": 488 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7L273-1", "protein_name": "BTB/POZ domain-containing protein KCTD9", "gene_name": "KCTD9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKMLCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 389 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80UN1-1", "protein_name": "BTB/POZ domain-containing protein KCTD9", "gene_name": "Kctd9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRRVTLFLNGSPSNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPFIDPQTDARPPGGLLGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDRSPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLLATPTKSELRCQCANLQGVKMLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR", "length": 339 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SE95-1", "protein_name": "FH protein interacting protein FIP2", "gene_name": "FIP2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "METSSNLSSMVRLNIGGKKFCTTIDTLTIREPDSMLAAMFSGRHAMCQESKKGYVFIDRDGKHFRHILNWLRDGVIPSLSDPDCSELLREADYYQLLGLKDGIKDSRKEVGEVEAELTRIDIIKCIQTERVRFRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCAKFRNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGANMTGAIR", "length": 298 }, "evidence": [ { "id": "F1RJU1", "url": "https://omabrowser.org/oma/group/F1RJU1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "F1RJU1", "url": "https://www.uniprot.org/uniprotkb/F1RJU1" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FQ28-1", "uniprot_ac": "A0A8W4FQ28", "uniprot_id": "A0A8W4FQ28_PIG", "mass": { "chemical_mass": 220142.0, "monoisotopic_mass": 220142.0 }, "refseq": {}, "gene_names": [ { "name": "FER1L4", "type": "recommended", "evidence": [ { "id": "A0A8W4FQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28" } ] } ], "protein_names": [ { "name": "Fer-1 like family member 4 (pseudo", "type": "synonym", "evidence": [ { "id": "A0A8W4FQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQ28", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FER1L4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28", "locus": {} } ], "crossref": [ { "id": "cd04011", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04011", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04018", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04018", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08373", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08373", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08374", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08374", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12546:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12546:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08151", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08151", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16165", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16165", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQ28", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQ28-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "NGSDCMCAATDRTALDSRSGSAQLWVSQGSFYFQLFRWPHYGAPLAGECLSIQVVNCSHVFSPRSLGTLVISLQQLQSAGHLVLREALVDKNLRVSRIQVELDLKYQPPEGSGMPGEARLERRAVALGRRLARGLGQQDDEDNELDLELELELEDEPDVELSGVVFSPLKSRARGLACGDPFQISRVQDFQVGVTVLEAQKLVGVNINPYVAVRVGEQRRVTATQRGTNCPFYNEYFLFEFHETRLRLQDLLLEITVRKVGVGGFGQRRGDAFHSQTLPFMATQIGTFRMDLGIIFDQPDGHFYQKWAPLHDPRDTRAGTKGFVKVTLSVRARGDLPAPLPPAGPGHSSDIEKNLLLPRRVPAERPWARLRVRVYRAEGLPALRPGLLGSLARALQDQRVLVDPYVRVSFLGQQGETSVRGEAAAPEWNEQLSFVELFPPLTRSLRLQLRDDAPLVDVALATHVLDLRQISHPGRAAGFNPTFGPTWISLYGSPPSGGLRDSLQNLNEGFGHGIWFRGRLLIAVSMEVLEGRAETEPPQVPQGSRLSRLMRKKKKAKRGQTPVGIQQHLDASSSADAPEIPSAMEVEVEELLPLPENALAPCEDFLLFAVLFEATMIDPTMASQPISFEISIGMLHALAETLIGPGSRASGGGRWVSTLLLPNWPRPYFCLPLRHRKPCVRVWSRWEDHSWRLQSSNCVRKVAERLDQGLQEVESLQRRPGSGACMRLRQTLEELVAGSRQFCQGAERRTMTRPNTLDRCRGKLLVHSLNILAKQGLQLLQGLRQSNMQEKVALAKKLLAKLRFLAQEVMPFLCPQPQPPLPDVLVWMLSGRRRVAWARIPAQDVLFSVVEEERGRDCGKIQSLLLTAPGAAPGEVCAKLELFLWLGLGKQAKACTSELPLDLLPEPSAGLPPLGLLRIWDFSYFQLRAHLYQARGVLAADDSGLSDPFARVVISTQCQTTRVLEQTLSPLWDELLVFDQLIVDGRREHLQEEPPLVVVSVFDHNKFGPPVFLGRALAAPRVKLMEDPYQWPELQFFPLRKGPRAAGELIATFELIELDYSSRLEPSVPSDVEPQDLAPLVEPLSGRLSLPPHVRPVLREFRVEVLFWGLRGLGRVHLFEVEQPQVVLEVAGQRVESEVLASYREKPNFTELVRHLTVVRPWTQVLSPYPQDLPEQPYLQPPLSILVIERRAFGRTVLVGSHIVPHMLRFTLRGHEEPPEEEGEEDTEDLVPKGPQGQRSPDPFLAEAGIPRRLLKAPLKKLPLGGLLNQGPGLEEDIPDPEELDWWSKYYASLQELQGQTNFDEDEMDDPGDSDGVNLISVDGEAQDQGEAEIKGPVFQKKAIATLKIYNHSLEEEFNHFEDWLNVFPLYRGQRGQDGDGAEEGSGNLVGKFKGSLLIYPEAEAMSFSEPQISRGIPQNRPIKLLVRVYVVKATNLAPADPNGKADPYVVVSAGRERLDTKERYIPKQLNPIFGEVLELSISLPAEPELTVAVFDHDLVGSDDLIGETHIDLENRFYSHHRANCGLGPQEGGYNAWRDAFRPSQILAGLCQRCGLPAPEYRAGAVKVGSKVFLTPPETLEVPEEAQALLVLRRWQEMPRLGIQLVPEHVETRPLYHPRSPGLLQGSLHMWIDIFPRDVPAPPPVDIKPRQPISYELRVIIWNTEDVVLDDVNPLTGEMSSDIYVKSWVKGLEPDKQETDVHFNSLTGEGNFNWRFVFRFDYLPTEREVSIRRRPGPSALEEAEFRQPAVLVLQVWDYDRISANDFLGSLELQLPDMVRGARGPELCSVRLAREGAGPRCNLFRCRRLRGWWPVVKLREPEDEEREQREAQAGKKRKKRRRGRPEDLEFKDAGGNIYILTGKVEAEFELLTVEEAEKRPVGKGRKEPEPLEKPNRPKTSFNWFVNPLKTFVFFIWRRYWRILLLLLLLALITIFLLLVFYTMPGQISRVIFHPLQGP", "length": 1957, "header": "tr|A0A8W4FQ28-1|A0A8W4FQ28_PIG Isoform 1 of Fer-1 like family member 4 (pseudo OS=Sus scrofa OX=9823 GN=FER1L4 PE=4 SV=1 CANONICAL=A0A8W4FQ28-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F7U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7U3/entry", "sequence": { "sequence": "MALTVCVRRLTGLPGTHDRQVRLSFRGFTQKTRRIHCGPEADIGELFRWPHYGAPLAGECLSIQVVNCSHVFSPRSLGTLVISLQQLQSAGHLVLREALVDKNLRVSRIQVELDLKYQPPEGSGMPGEARLERRAVALGRRLARGLGQQDDEDNELDLELELELEDEPDVELSGVVFSPLKSRARGLACGDPFQISRVQDFQVGVTVLEAQKLVGVNINPYVAVRVGEQRRVTATQRGTNCPFYNEYFLFEFHETRLRLQDLLLEITAFHSQTLPFMATQIGTFRMDLGIIFDQPDGHFYQKWAPLHDPRDTRAGTKGFVKVTLSVRARGDLPAPLPPAGPGHSSDIEKNLLLPRRVPAERPWARLRVRVYRAEGLPALRPGLLGSLARALQDQRVLVDPYVRVSFLGQQGETSVRGEAAAPEWNEQLSFVELFPPLTRSLRLQLRDDAPLVDVALATHVLDLRQISHPGRAAGFNPTFGPTWISLYGSPPSGGLRDSLQNLNEGFGHGIWFRGRLLIAVSMEVLEGRAETEPPQVPQGSRLSRLMRKKKKAKRGQTPVGIQQHLDASSSADAPEIPSAMEVEVEELLPLPENALAPCEDFLLFAVLFEATMIDPTMASQPISFEISIGRAGRQEEQLGRGSRPGEGAESVAGEAEPLLELDQGAGPVEEEELGTPAQQPEPMDGSGPYFCLPLRHRKPCVRVWSRWEDHSWRLQSSNCVRKVAERLDQGLQEVESLQRRPGSGACMRLRQTLEELVAGSRQFCQGAERRTMTRPNTLDRCRGKLLVHSLNILAKQGLQLLQGLRQSNMQEKVALAKKLLAKLRFLAQEPQPPLPDVLVWMLSGRRRVAWARIPAQDVLFSVVEEERGRDCGKIQSLLLTAPGAAPGEVCAKLELFLWLGLGKQAKACTSELPLDLLPEPSAGLPRSLFRDGEKFRGVYFQLRAHLYQARGVLAADDSGLSDPFARVVISTQCQTTRVLEQTLSPLWDELLVFDQLIVDGRREHLQEEPPLVVVSVFDHNKFGPPVFLGRALAAPRVKLMEDPYQWPELQFFPLRKGPRAAGELIATFELIELDYSSRLEPSVPSDVEPQDLAPLVEPLSGRLSLPPHVRPVLREFRVEVLFWGLRGLGRVHLFEVEQPQVVLEVAGQRVESEVLASYREKPNFTELVRHLTVDLPEQPYLQPPLSILVIERRAFGRTVLVGSHIVPHMLRFTLRGHEEPPEEEGEEDTEDLVPKGPQDPFLAEAGIPRRLLKAPLKKLPLGGLLNQGPGLEEDIPDPEELDWWSKYYASLQELQGQVRAEDEMDDPGDSDGVNLISVDGEAQDQGEAEIKGPVFQKKAIATLKVTGGPRLSDLQPLPRGRGSGWRWIQGMFGEGIGVQGGSLLIYPEAEAMSFSEPQISRGIPQNRPIKLLVRVYVVKATNLAPADPNGKADPYVVVSAGRERLDTKERYIPKQLNPIFGEVLELSISLPAEPELTVAVFDHDLVGSDDLIGETHIDLENRFYSHHRANCGLASQYDMGGYNAWRDAFRPSQILAGLCQRCGLPAPEYRAGAVKVGSKVFLTPPETLPPGTRSSKVASEVPEEAQALLVLRRWQEMPRLGIQLVPEHVETRPLYHPRSPGLLQGSLHMWIDIFPRDVPAPPPVDIKPRQPISYELRVIIWNTEDVVLDDVNPLTGEMSSDIYVKSWVKGLEPDKQETDVHFNSLTGEGNFNWRFVFRFDYLPTEREVSIRRRPGPSALEEAEFRQPAVLVLQVWDYDRISANDFLGSLELQLPDMVRGARGPELCSVRLAREGAGPRCNLFRCRRLRGWWPVVKLREPEDEEREQREAQAGKKRKKRRRGRPEDLEFKDAGGNIYILTGKVEAEFELLTVEEAEKRPVGKGRKEPEPLEKPNRPKTSFNWFVNPLKTFVFFIWRRYWRILLLLLLLALITIFLLLVFYTMPGQISRVIFHPLQGP", "length": 1956, "header": "tr|A0A8W4F7U3-1|A0A8W4FQ28_PIG Computationally mapped isoform of Fer-1 like family member 4 (pseudo OS=Sus scrofa OX=9823 GN=FER1L4 PE=4 SV=1 CANONICAL=A0A8W4FQ28-1" }, "locus": { "chromosome": "17", "start_pos": 38944698, "end_pos": 38900900, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102087.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102087.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075314.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075314.1" } ] } }, { "isoform_ac": "A0A8W4FQ28-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28/entry", "sequence": { "sequence": "NGSDCMCAATDRTALDSRSGSAQLWVSQGSFYFQLFRWPHYGAPLAGECLSIQVVNCSHVFSPRSLGTLVISLQQLQSAGHLVLREALVDKNLRVSRIQVELDLKYQPPEGSGMPGEARLERRAVALGRRLARGLGQQDDEDNELDLELELELEDEPDVELSGVVFSPLKSRARGLACGDPFQISRVQDFQVGVTVLEAQKLVGVNINPYVAVRVGEQRRVTATQRGTNCPFYNEYFLFEFHETRLRLQDLLLEITVRKVGVGGFGQRRGDAFHSQTLPFMATQIGTFRMDLGIIFDQPDGHFYQKWAPLHDPRDTRAGTKGFVKVTLSVRARGDLPAPLPPAGPGHSSDIEKNLLLPRRVPAERPWARLRVRVYRAEGLPALRPGLLGSLARALQDQRVLVDPYVRVSFLGQQGETSVRGEAAAPEWNEQLSFVELFPPLTRSLRLQLRDDAPLVDVALATHVLDLRQISHPGRAAGFNPTFGPTWISLYGSPPSGGLRDSLQNLNEGFGHGIWFRGRLLIAVSMEVLEGRAETEPPQVPQGSRLSRLMRKKKKAKRGQTPVGIQQHLDASSSADAPEIPSAMEVEVEELLPLPENALAPCEDFLLFAVLFEATMIDPTMASQPISFEISIGMLHALAETLIGPGSRASGGGRWVSTLLLPNWPRPYFCLPLRHRKPCVRVWSRWEDHSWRLQSSNCVRKVAERLDQGLQEVESLQRRPGSGACMRLRQTLEELVAGSRQFCQGAERRTMTRPNTLDRCRGKLLVHSLNILAKQGLQLLQGLRQSNMQEKVALAKKLLAKLRFLAQEVMPFLCPQPQPPLPDVLVWMLSGRRRVAWARIPAQDVLFSVVEEERGRDCGKIQSLLLTAPGAAPGEVCAKLELFLWLGLGKQAKACTSELPLDLLPEPSAGLPPLGLLRIWDFSYFQLRAHLYQARGVLAADDSGLSDPFARVVISTQCQTTRVLEQTLSPLWDELLVFDQLIVDGRREHLQEEPPLVVVSVFDHNKFGPPVFLGRALAAPRVKLMEDPYQWPELQFFPLRKGPRAAGELIATFELIELDYSSRLEPSVPSDVEPQDLAPLVEPLSGRLSLPPHVRPVLREFRVEVLFWGLRGLGRVHLFEVEQPQVVLEVAGQRVESEVLASYREKPNFTELVRHLTVVRPWTQVLSPYPQDLPEQPYLQPPLSILVIERRAFGRTVLVGSHIVPHMLRFTLRGHEEPPEEEGEEDTEDLVPKGPQGQRSPDPFLAEAGIPRRLLKAPLKKLPLGGLLNQGPGLEEDIPDPEELDWWSKYYASLQELQGQTNFDEDEMDDPGDSDGVNLISVDGEAQDQGEAEIKGPVFQKKAIATLKIYNHSLEEEFNHFEDWLNVFPLYRGQRGQDGDGAEEGSGNLVGKFKGSLLIYPEAEAMSFSEPQISRGIPQNRPIKLLVRVYVVKATNLAPADPNGKADPYVVVSAGRERLDTKERYIPKQLNPIFGEVLELSISLPAEPELTVAVFDHDLVGSDDLIGETHIDLENRFYSHHRANCGLGPQEGGYNAWRDAFRPSQILAGLCQRCGLPAPEYRAGAVKVGSKVFLTPPETLEVPEEAQALLVLRRWQEMPRLGIQLVPEHVETRPLYHPRSPGLLQGSLHMWIDIFPRDVPAPPPVDIKPRQPISYELRVIIWNTEDVVLDDVNPLTGEMSSDIYVKSWVKGLEPDKQETDVHFNSLTGEGNFNWRFVFRFDYLPTEREVSIRRRPGPSALEEAEFRQPAVLVLQVWDYDRISANDFLGSLELQLPDMVRGARGPELCSVRLAREGAGPRCNLFRCRRLRGWWPVVKLREPEDEEREQREAQAGKKRKKRRRGRPEDLEFKDAGGNIYILTGKVEAEFELLTVEEAEKRPVGKGRKEPEPLEKPNRPKTSFNWFVNPLKTFVFFIWRRYWRILLLLLLLALITIFLLLVFYTMPGQISRVIFHPLQGP", "length": 1957, "header": "tr|A0A8W4FQ28-1|A0A8W4FQ28_PIG Isoform 1 of Fer-1 like family member 4 (pseudo OS=Sus scrofa OX=9823 GN=FER1L4 PE=4 SV=1 CANONICAL=A0A8W4FQ28-1" }, "locus": { "chromosome": "17", "start_pos": 38944699, "end_pos": 38900900, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099200.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099200.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080441.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080441.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7U3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7U3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQ28", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ28" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGC7/entry#names_and_taxonomy" } ] }, { "name": "Acid trehalase-like protein 1", "type": "synonym", "evidence": [ { "id": "F1RGC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGC7/entry#names_and_taxonomy" } ] }, { "name": "protein-glucosylgalactosylhydroxylysine glucosidase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020938189", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938189" } ] } ], "function": [ { "annotation": "Catalyzes the hydrolysis of glucose from the disaccharide unit linked to hydroxylysine residues of collagen and collagen-like proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1RGC7", "url": "https://www.uniprot.org/uniprotkb/F1RGC7#function" }, { "database": "UniProtKB", "id": "ARBA00053339", "url": "https://www.uniprot.org/uniprotkb/ARBA00053339#function" }, { "database": "UniProtKB", "id": "A0A8W4F899", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F899#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGC7", "url": "https://www.uniprot.org/uniprotkb/F1RGC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PGGHG", "url": "https://www.uniprot.org/uniprotkb/F1RGC7", "locus": { "chromosome": "2", "start_pos": 106991, "end_pos": 99271, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025023", "url": "https://www.ensembl.org/id/ENSSSCG00000025023" } ] } } ], "crossref": [ { "id": "F1RGC7", "url": "https://alphafold.ebi.ac.uk/entry/F1RGC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025023", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025023", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518005", "url": "https://www.ncbi.nlm.nih.gov/gene/100518005", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RGC7", "url": "https://www.orthodb.org/?gene=F1RGC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11051:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11051:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03633", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03633", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938189", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938189", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "11068", "url": "https://www.rhea-db.org/rhea/11068", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4F899", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F899", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F899-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F899-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGC7", "url": "https://www.uniprot.org/uniprotkb/F1RGC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGC7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDAGRDPTVFTAHSLPSDPRLLATVTNAYLGTRVYHDTLHVSGVYNGASGETHRAILPSPLNVQLEAPAGAGEQLINTFALDTNTGSPRLPGPTPPTTAPGSFLHTLEGPSFRVSQRICAHRVLPHVLTFSVAITRLAARSWPITVRLRSAFSPESPDLDLHLGPDFQGARYLYGHTLTTEQPGGAQQEVHMLWTPVPPALTLGEGEENGTWEFLTVVAGSQAETQACLAEALQLQVRGTLYTTHAQAWAQLWADCGLDVDGPLPLRQALRGALYYLLSALPQPGTPGYVCHGLSPGGLSNGSREECYWGHVFWDQDLWMFPNILMFHPEAARALLQYRIRTLSGALDNARKLGYQGAKFAWESASSGLEVCPEAIYGTQEIHINGAVVLAFQLYYHMTQDLQLFQEAGGWDVVSAVAEFWCSRVEWSPEEEKYHLKGVMPPDEYHSGVNNSVYTNVLVQNSLRFAAALAQDLGRPVPNQWLEVADKIKVPFDPKLNFYPEFDGYQPGEEVKQADVVLLGYPVPFPLSPTVRRQNLEIYEAVTCPQGPAMTWSMFAVGWMELKEPGRAWDLLEKSFANTSEPFKVWTENADGSGAVNFLTGMGGFLQAVLFGFTGFRITRAGLTFDPMCPAGISGVCVSGISYQGSKLDFSFSEGSVTVTVTARAGPWAPPLEAELWPSQDRLPLPPGHKVSFPCSAGRIQRSHPWEARATSSAPRSAACLASGTPPSS", "length": 730, "header": "tr|F1RGC7-1|F1RGC7_PIG Isoform 1 of Protein-glucosylgalactosylhydroxylysine glucosidase OS=Sus scrofa OX=9823 GN=PGGHG PE=3 SV=4 CANONICAL=F1RGC7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F899-1", "url": 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"https://www.ensembl.org/id/ENSSSCT00000105242.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075035.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075035.1" } ] } }, { "isoform_ac": "F1RGC7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGC7/entry", "sequence": { "sequence": "MEDAGRDPTVFTAHSLPSDPRLLATVTNAYLGTRVYHDTLHVSGVYNGASGETHRAILPSPLNVQLEAPAGAGEQLINTFALDTNTGSPRLPGPTPPTTAPGSFLHTLEGPSFRVSQRICAHRVLPHVLTFSVAITRLAARSWPITVRLRSAFSPESPDLDLHLGPDFQGARYLYGHTLTTEQPGGAQQEVHMLWTPVPPALTLGEGEENGTWEFLTVVAGSQAETQACLAEALQLQVRGTLYTTHAQAWAQLWADCGLDVDGPLPLRQALRGALYYLLSALPQPGTPGYVCHGLSPGGLSNGSREECYWGHVFWDQDLWMFPNILMFHPEAARALLQYRIRTLSGALDNARKLGYQGAKFAWESASSGLEVCPEAIYGTQEIHINGAVVLAFQLYYHMTQDLQLFQEAGGWDVVSAVAEFWCSRVEWSPEEEKYHLKGVMPPDEYHSGVNNSVYTNVLVQNSLRFAAALAQDLGRPVPNQWLEVADKIKVPFDPKLNFYPEFDGYQPGEEVKQADVVLLGYPVPFPLSPTVRRQNLEIYEAVTCPQGPAMTWSMFAVGWMELKEPGRAWDLLEKSFANTSEPFKVWTENADGSGAVNFLTGMGGFLQAVLFGFTGFRITRAGLTFDPMCPAGISGVCVSGISYQGSKLDFSFSEGSVTVTVTARAGPWAPPLEAELWPSQDRLPLPPGHKVSFPCSAGRIQRSHPWEARATSSAPRSAACLASGTPPSS", "length": 730, "header": "tr|F1RGC7-1|F1RGC7_PIG Isoform 1 of Protein-glucosylgalactosylhydroxylysine glucosidase OS=Sus scrofa OX=9823 GN=PGGHG PE=3 SV=4 CANONICAL=F1RGC7-1" }, "locus": { "chromosome": "2", "start_pos": 104561, "end_pos": 99834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015912.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015912.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015492.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015492.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 287, "start_aa": "Thr", "end_pos": 287, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr287", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 95, "start_aa": "Thr", "end_pos": 95, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr95", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F899", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F899" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-glucosylgalactosylhydroxylysine glucosidase activity", "id": "GO:0047402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047402", "evidence": [ { "database": "UniProtKB", "id": "F1RGC7", "url": "https://www.uniprot.org/uniprotkb/F1RGC7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "F1RGC7", "url": "https://www.uniprot.org/uniprotkb/F1RGC7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RGC7", "url": "https://www.uniprot.org/uniprotkb/F1RGC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11068", "name": "", "equation": "(5R)-5-O-[alpha-D-glucosyl-(1->2)-beta-D-galactosyl]-5-hydroxy-L-lysyl-[collagen] + H2O = (5R)-5-O-(beta-D-galactosyl)-5-hydroxy-L-lysyl-[collagen] + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11068", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11068" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RGC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 730, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RGC7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RGC7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGC7" }, { "id": "PF03633", "database": "Pfam", "url": 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}, { "id": "PF15914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4F8K1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8K1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8K1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9Z4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Z4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Z4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAF9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"MVWSSPVASHTLGTCDPYLRSLEPGLPPLSLPGPPRPPWRLPSSLPRRGPPWPGMPPGSWSWLCGSCLEFFSLFQTPFNFGMNHRAPPYPAGDYCLLCRSERKDASFLDGGVKTASRPALSVAPKGNSVLRLPLWVCPDCRRAVEKEERHGGLDPPGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKADQLSERESVVDHRRVEDLLQFINSSETKPVSSTRAAKRARHKQRKLEEKARLEAEARAREHLHLREEQRREEEEELERLQELQKLRAVKKKKKERPSKDCPKLDMLARSFQAATESLPNSENIHNGSLEPVQDPDTSSRSPSRHADHTEPGDPADARDSKLLLPKGVGGKQQEPLSFLLNVMHQHREGNGKQKLKPASKACSEPAPARPRPQPQPQAEPKARVLDLTPLAEHRREDRKANSNNNNRKPLNHVREEKSSPGPAEPAPAEQPPSSKPVPADSPQPKGKARKSKKKKGDRASSSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWSNFSLKKATFAAH", 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"MNHRAPPYPAGDYCLLCRSERKDASFLDGGVKTASRPALSVAPKGNSVLRLPLWVCPDCRRAVEKEERHGGLDPPAQGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGVSACGSSAGTAHPVAFRATLWRSFICSVVQVMVHSREFPPWLSGNEPD", "length": 1053, "header": "tr|A0A8W4F8K1-1|A0A8W4FQ22_PIG Computationally mapped isoform of Family with sequence similarity 193 member A OS=Sus scrofa OX=9823 GN=FAM193A PE=3 SV=1 CANONICAL=A0A8W4FQ22-1" }, "locus": { "chromosome": "8", "start_pos": 1503825, "end_pos": 1438716, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093292.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093292.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075145.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075145.1" } ] } }, { "isoform_ac": "A0A8W4F9Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Z4/entry", "sequence": { "sequence": "MNHRAPPYPAGDYCLLCRSERKDASFLDGGVKTASRPALSVAPKGNSVLRLPLWVCPDCRRAVEKEERHGGLDPPAQGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKADQLSERESVVDHRRVEDLLQFINSSETKPVSSTRAAKRARHKQRKLEEKARLEAEARAREHLHLREEQRREEEEELERLQELQKLRAVKKKKKERPSKDCPKLDMLARSFQAATESLPNSENIHNGSLEPVQDPDTSSRSPSRHADHTEPGPGRGPGADGDASDPADARDSKLLLPKGVGGKQQEPLSFLLNVMHQHREGNGKQKLKPASKACSEPARKPPQPQAEPKARVLDLTPLAEHRREDRKANSNNNNRKPLNHVREEKSSPGPAEPAPAEQPPSSKPVPADSPQPKGKARKSKKKKGDRASSSIGKYGPGIARPALLFHCLVASPGHARCSVVDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWSNFSLKKATFAAH", "length": 1434, "header": "tr|A0A8W4F9Z4-1|A0A8W4FQ22_PIG Computationally mapped isoform of Family with sequence similarity 193 member A OS=Sus scrofa OX=9823 GN=FAM193A PE=3 SV=1 CANONICAL=A0A8W4FQ22-1" }, "locus": { "chromosome": "8", "start_pos": 1523288, "end_pos": 1438716, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106097.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106097.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075117.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075117.1" } ] } }, { "isoform_ac": "A0A8W4FAF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAF9/entry", "sequence": { "sequence": "MSPADAKRGAKRRKNKRGGGGGGSGGGNGGAGSGKAGPAAALRGSQAPGLAAPGGAAAANGPLGAGAGGAAPGGYFEQGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKADQLSERESVVDHRRVEDLLQFINSSETKPVSSTRAAKRARHKQRKLEEKARLEAEARAREHLHLREEQRREEEEELERLQELQKLRAVKKKKKERPSKDCPKLDMLARSFQAATESLPNSENIHNGSLEPVQDPDTSSRSPSRHADHTEPGPGRGPGADGDASDPADARDSKLLLPKGVGGKQQEPLSFLLNVMHQHREGNGKQKLKPASKACSEPAPARPRPQPQPQAEPKARVLDLTPLAEHRREDRKANSNNNNRKPLNHVREEKSSPGPAEPAPAEQPPSSKPVPADSPQPKGKARKSKKKKGDRASSSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWSNFSLKKATFAAH", "length": 1410, "header": "tr|A0A8W4FAF9-1|A0A8W4FQ22_PIG Computationally mapped isoform of Family with sequence similarity 193 member A OS=Sus scrofa OX=9823 GN=FAM193A PE=3 SV=1 CANONICAL=A0A8W4FQ22-1" }, "locus": { "chromosome": "8", "start_pos": 1523288, "end_pos": 1388266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100526.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100526.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075282.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075282.1" } ] } }, { "isoform_ac": "A0A8W4FCC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCC0/entry", "sequence": { "sequence": "MCGCCRAPGGYLDSDTPFNFGMNHRAPPYPAGDYCLLCRSERKDASFLDGGVKTASRPALSVAPKGNSVLRLPLWVCPDCRRAVEKEERHGGLDPPAVSGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKADQLSERESVVDHRRVEDLLQFINSSETKPVSSTRAAKRARHKQRKLEEKARLEAEARAREHLHLREEQRREEEEELERLQELQKLRAVKKKKKERPSKDCPKLDMLARSFQAATESLPNSENIHNGSLEPVQDPDTSSRSPSRHADHTEPGPGRGPGADGDASDPADARDSKLLLPKGVGGKQQEPLSFLLNVMHQHREGNGKQKLKPASKACSEPARKPPQPQAEPKARVLDLTPLAEHRREDRKANSNNNNRKPLNHVREEKSSPGPAEPAPAEQPPSSKPVPADSPQPKGKARKSKKKKGDRASSSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWSNFSLKKATFAAH", "length": 1427, "header": "tr|A0A8W4FCC0-1|A0A8W4FQ22_PIG Computationally mapped isoform of Family with sequence similarity 193 member A OS=Sus scrofa OX=9823 GN=FAM193A PE=3 SV=1 CANONICAL=A0A8W4FQ22-1" }, "locus": { "chromosome": "8", "start_pos": 1523288, "end_pos": 1437993, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095139.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095139.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076908.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076908.1" } ] } }, { "isoform_ac": "A0A8W4FQ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ22/entry", "sequence": { "sequence": "MVWSSPVASHTLGTCDPYLRSLEPGLPPLSLPGPPRPPWRLPSSLPRRGPPWPGMPPGSWSWLCGSCLEFFSLFQTPFNFGMNHRAPPYPAGDYCLLCRSERKDASFLDGGVKTASRPALSVAPKGNSVLRLPLWVCPDCRRAVEKEERHGGLDPPGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKADQLSERESVVDHRRVEDLLQFINSSETKPVSSTRAAKRARHKQRKLEEKARLEAEARAREHLHLREEQRREEEEELERLQELQKLRAVKKKKKERPSKDCPKLDMLARSFQAATESLPNSENIHNGSLEPVQDPDTSSRSPSRHADHTEPGDPADARDSKLLLPKGVGGKQQEPLSFLLNVMHQHREGNGKQKLKPASKACSEPAPARPRPQPQPQAEPKARVLDLTPLAEHRREDRKANSNNNNRKPLNHVREEKSSPGPAEPAPAEQPPSSKPVPADSPQPKGKARKSKKKKGDRASSSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWSNFSLKKATFAAH", "length": 1476, "header": "tr|A0A8W4FQ22-1|A0A8W4FQ22_PIG Isoform 1 of Family with sequence similarity 193 member A OS=Sus scrofa OX=9823 GN=FAM193A PE=3 SV=1 CANONICAL=A0A8W4FQ22-1" }, "locus": { "chromosome": "8", "start_pos": 1523288, "end_pos": 1436031, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099273.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099273.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081310.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081310.1" } ] } }, { "isoform_ac": "I3LH96-1", "url": "https://www.uniprot.org/uniprotkb/I3LH96/entry", "sequence": { "sequence": "MGACLCVFQANFTFLTPFNFGMNHRAPPYPAGDYCLLCRSERKDASFLDGGVKTASRPALSVAPKGNSVLRLPLWVCPDCRRAVEKEERHGGLDPPGQDFLLHTPLGGSQPEGGGGRLTLGAQPLPSATPSDAACACEACSERREVSAEVDREPQQLQNYWSEVRYTVRCIYRQAGTPLADDQDQSLVPDKEGVKELVDRLCERDPYQLYQRLEQQAREYVLEMKVRLLRQLSAASRVKSPSALQGPPQAHQFISLLLEEYGALCQAARTISTFLGTLENEHLKKFQVTWELHNKHLFEDLVFSEPLLQNSLPALVSQIRLGTTTHDTCNEDTYSTLLQRFQRSEEELRGVAEEWLECQKRIDAYVDEQMAMKTKQRLLSEDWELLRQRRFIQEQLTNKKAVTGENSFTDTMRHVLSSRLSLPDCPNCNYRRRCACDDCSLSHILTCGIVDPPVAGDLHIHQLPLQVDSAPDCLPEMRPPSVSSASSGSGSSSPVTIQQHPRLLLTDNSSAPAFCSDDEDVAPLSAKFADIYPLSNYDDAEVVANMNGIHSELNGGGENLALKDESPQVSSTSSSSSDADDEEADGESGGEPPGAPKDAAALGSGSPRKEESKVDSPPPSYPTQQAEQAPNACECHVCKQEASGSPPAAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHAVPHLPRPLIHPTLYTAPPFAHSKALPPAPVQSHTNKHQVFSASLQDHIYPSCFGNTPEWNSSKFISLWGSEVMNDKNWNPGTFLPDTVSGNDILGPTLSETRPEALPPPSSNEIPAVSDSKEKKNAAKKKCLYNFQDAFMDANKVVMATSSATSSVSCTATTVQSSNSQFRVSSKRPPSLGEAFHGVGVGKEDHRHGVPAAPRNSPTGLAPLPALTPAALSPASTPHLANLSAPSFPKTATPSPGFVESRKSFCSAPLAPPPPTTDGSVSAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKADQLSERESVVDHRRVEDLLQFINSSETKPVSSTRAAKRARHKQRKLEEKARLEAEARAREHLHLREEQRREEEEELERLQELQKLRAVKKKKKERPSKDCPKLDMLARSFQAATESLPNSENIHNGSLEPVQDPDTSSRSPSRHADHTEPGPGRGPGADGDASDPADARDSKLLLPKGVGGKQQEPLSFLLNVMHQHREGNGKQKLKPASKACSEPARKPVEPPGPQRPRPGPVLDLTPLAEHRREDRKANSNNNNRKPLNHVREEKSSPGPAEPAPAEQPPSSKPVPADSPQPKGKARKSKKKKGDRASSSIDDVFLPKDIDLDSVDMDETEREVEYFKRFCLDSARQTRQRLSINWSNFSLKKATFAAH", "length": 1427, "header": "tr|I3LH96-1|A0A8W4FQ22_PIG Computationally mapped isoform of Family with sequence similarity 193 member A OS=Sus scrofa OX=9823 GN=FAM193A PE=3 SV=5 CANONICAL=A0A8W4FQ22-1" }, "locus": { "chromosome": "8", "start_pos": 1523288, "end_pos": 1437760, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029015.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029015.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023441.4", "url": "https://www.ensembl.org/id/ENSSSCP00000023441.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 189, "start_aa": "Thr", "end_pos": 189, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr189", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 987, "start_aa": "Thr", "end_pos": 987, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr987", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LH96", "url": "https://www.uniprot.org/uniprotkb/I3LH96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1139, "end_pos": 1141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1241, "end_pos": 1243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1462, "end_pos": 1464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1465, "end_pos": 1467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 568, "end_pos": 570, "annotation": "n_glycosylation_sequon" }, { "start_pos": 806, "end_pos": 808, "annotation": "n_glycosylation_sequon" }, { "start_pos": 976, "end_pos": 978, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A8W4FQ22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQ22" }, { "id": "PF15914", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15914" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM193 C-terminal", "eco_id": "ECO_0000259", "start_pos": 1419, "end_pos": 1475, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 189, 987 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1139, "end_pos": 1141 }, { "start_pos": 1241, "end_pos": 1243 }, { "start_pos": 1462, "end_pos": 1464 }, { "start_pos": 1465, "end_pos": 1467 }, { "start_pos": 568, "end_pos": 570 }, { "start_pos": 806, "end_pos": 808 }, { "start_pos": 976, "end_pos": 978 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RN34-1", "uniprot_ac": "F1RN34", "uniprot_id": "F1RN34_PIG", "mass": { "chemical_mass": 74962.0, "monoisotopic_mass": 74962.0 }, "refseq": { "ac": "XP_005653895", "name": "transmembrane and coiled-coil domain-containing protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653895" }, "gene_names": [ { "name": "TMCO3", "type": "recommended", "evidence": [ { "id": "F1RN34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ] }, { "name": "TMCO3", "type": "synonym", "evidence": [ { "id": "XP_005653895", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653895" } ] } ], "protein_names": [ { "name": "Transmembrane and coiled-coil domains 3", "type": "synonym", "evidence": [ { "id": "F1RN34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RN34/entry#names_and_taxonomy" } ] }, { "name": "transmembrane and coiled-coil domain-containing protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005653895", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653895" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMCO3", "url": "https://www.uniprot.org/uniprotkb/F1RN34", "locus": { "chromosome": "11", "start_pos": 78743063, "end_pos": 78709062, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009563", "url": "https://www.ensembl.org/id/ENSSSCG00000009563" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009563", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009563", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620378", "url": "https://www.ncbi.nlm.nih.gov/gene/100620378", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IKAHASK", "url": "https://omabrowser.org/oma/group/IKAHASK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RN34", "url": "https://www.orthodb.org/?gene=F1RN34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16254:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16254:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653895", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653895", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4F9T0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9T0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN34-1", "url": "https://www.uniprot.org/uniprotkb/F1RN34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRALGNSPVWMVLPFLPLLAGGAEHEEVARHAIKLHRGRGAAVTQRRQWVLDGCRKLSGLLRQKAVVLNKLRNAIRAVERDTGLSDEERLFQVHTFEIFQKELNESENSVFQAIHGLQRALQGDYRDVVNMKESSRQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSILDEILEDVRKAADRLEEELEEHAFDDNKSVKGVNFEAVLRVEEEEARSKQNLTRQDVEEGLGLSVLIDSQSNQYILAKPRDATIPRADHHLLKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSTVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMVAFGLFWGHFLQIRPTQSVFISTCLSLSSTPLVSKFLVGGTRSDKEGDVDYSAVLLGVLVMQDVQLGLFIAVLPTFIQAGAGAHSSVAVELLRILALVGQVLLSLAAVLLFCLVLKACLVGPCFRKLHAEGKGNKELLTLGTSAFIFLMLTVTELLDVSMELGCFLAGALISSQGHMVADEVLSYVEPVRDFLAIIFFASIGLHVFPTFVLYELSVLLVLTLSVVVMKFVLAALVLSLLLPKTSQYIKWIVAAGLAQVSEFSLVLGSRARRARVISREVYLLILGVTTLSLLLAPVLWRVAIARCVPRPERRSSL", "length": 677, "header": "tr|F1RN34-1|F1RN34_PIG Isoform 1 of Transmembrane and coiled-coil domains 3 OS=Sus scrofa OX=9823 GN=TMCO3 PE=4 SV=4 CANONICAL=F1RN34-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F9T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9T0/entry", "sequence": { "sequence": "MRALGNSPVWMVLPFLPLLAGGAEHEEVARHAIKLHRGRGAAVTQRRQWVLDGCRKLSGLLRQKAVVLNKLRNAIRAVERDTGLSDEERLFQVHTFEIFQKELNESENSVFQAIHGLQRALQGDYRDVVNMKESSRQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSILDEILEDVRKAADRLEEELEEHAFDDNKSVKGVNFEAVLRVEEEEARSKQNLTRQDVEEGLGLSVLIDSQSNQYILAKPRDATIPRADHHLLKDLEDFVKSGVPVVRLELQLSKSCFHSSGSFSWADIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSTVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMVAFGLFWGHFLQIRPTQSVFISTCLSLSSTPLVSKFLVGGTRSDKEGDVDYSAVLLGVLVMQDVQLGLFIAVLPTFIQAGAGAHSSVAVELLRILALVGQVLLSLAAVLLFCLVLKACLVGPCFRKLHAEGKGNKELLTLGTSAFIFLMLTVTELLDVSMELGCFLAGALISSQGHMVADEVLSYVEPVRDFLAIIFFASIGLHVFPTFVLYELSVLLVLTLSVVVMKFVLAALVLSLLLPKTSQYIKWIVAAGLAQVSEFSLVLGSRARRARVISREVYLLILGVTTLSLLLAPVLWRVAIARCVPRPERRSSL", "length": 710, "header": "tr|A0A8W4F9T0-1|F1RN34_PIG Computationally mapped isoform of Transmembrane and coiled-coil domains 3 OS=Sus scrofa OX=9823 GN=TMCO3 PE=4 SV=1 CANONICAL=F1RN34-1" }, "locus": { "chromosome": "11", "start_pos": 78742512, "end_pos": 78715380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094950.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094950.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075593.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075593.1" } ] } }, { "isoform_ac": "F1RN34-1", "url": "https://www.uniprot.org/uniprotkb/F1RN34/entry", "sequence": { "sequence": "MRALGNSPVWMVLPFLPLLAGGAEHEEVARHAIKLHRGRGAAVTQRRQWVLDGCRKLSGLLRQKAVVLNKLRNAIRAVERDTGLSDEERLFQVHTFEIFQKELNESENSVFQAIHGLQRALQGDYRDVVNMKESSRQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSILDEILEDVRKAADRLEEELEEHAFDDNKSVKGVNFEAVLRVEEEEARSKQNLTRQDVEEGLGLSVLIDSQSNQYILAKPRDATIPRADHHLLKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSTVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMVAFGLFWGHFLQIRPTQSVFISTCLSLSSTPLVSKFLVGGTRSDKEGDVDYSAVLLGVLVMQDVQLGLFIAVLPTFIQAGAGAHSSVAVELLRILALVGQVLLSLAAVLLFCLVLKACLVGPCFRKLHAEGKGNKELLTLGTSAFIFLMLTVTELLDVSMELGCFLAGALISSQGHMVADEVLSYVEPVRDFLAIIFFASIGLHVFPTFVLYELSVLLVLTLSVVVMKFVLAALVLSLLLPKTSQYIKWIVAAGLAQVSEFSLVLGSRARRARVISREVYLLILGVTTLSLLLAPVLWRVAIARCVPRPERRSSL", "length": 677, "header": "tr|F1RN34-1|F1RN34_PIG Isoform 1 of Transmembrane and coiled-coil domains 3 OS=Sus scrofa OX=9823 GN=TMCO3 PE=4 SV=4 CANONICAL=F1RN34-1" }, "locus": { "chromosome": "11", "start_pos": 78742512, "end_pos": 78715380, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010484.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010484.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010212.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010212.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F9T0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9T0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YVU1-1", "protein_name": "Transmembrane and coiled-coil domains 3", "gene_name": "TMCO3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKVPGFISLWTLTSLLCGQLGNAAEHEDVVKHAIKLHRGKGAVITQRKQWVMESCRKLSGLLRQKNVVLNKLKNAIRAVEKDAGLSDEEKLFQVHTFEIFQKELNESENSVFQAIHGLQRALQGDYKDVVNMKESSRQRLEALREAAIKEEMEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVRGVNFEAVLRVEEDEANSKRNASKREVEDDLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTMIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPERLRKVWKISLQGPCYMTVLMIAFGLLWGHLLQIRPTQSVFISTCLSLSSTPLVSRFLAGSVRGDKEGDIDYSSVLLGMLVMQDVQLGLFIAVMPTLIQAGVSTHSRYPISDICGMRSFQSRRTGLEAREQLKEMFCLFFSSSIFKEILRILILIGQILFSLAAVFLICLVIKTYLIGPYYRKLHTESKGNKEILILGISAFIFLMLTITELLDVSMELGCFLAGALISSQGHMVTEEIMACIEPIRDFLAIIFFTSIGLHVFPTFVIYELTVLLFLTLSVVIMKFVLAVLVLSLILPKTSQYIKWIVSAGLAQVSEFSFVLGSRARRAGIISREVYLLILSVTTLSLLLAPALWRAAIMKCVPRPERRSST", "length": 714 }, "evidence": [ { "id": "F1RN34", "url": "https://omabrowser.org/oma/group/F1RN34/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LT19-1", "protein_name": "Transmembrane and coiled-coil domains 3", "gene_name": "Slc9d1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKALDPSLLCLLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRRQWALDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDASLSGEEKLFQVHTFEIFQKELNESENSVFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNLTKREVEGGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTTIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLVGSARGDKEAGDLDYSTVLLGMLVMQDVQLGLFIAVMPTLIQASASTSSSVVMEVLRILFLIGQILFSLAAVFLLCLVMKTYLIGPYYRKLHLESKGNKEILILGVSAFTFLMLTVTELLDVSMELGCFLAGALVSSQGHIVTEEIMGYIEPIRDFLAIIFFASIGLHVFPTFVIYELTVLVFLTLSVVIMKFVLAVLVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGIISREVYLLILSVTTLSLLLAPVLWKAAITKCVPRPERRSSL", "length": 678 }, "evidence": [ { "id": "F1RN34", "url": "https://omabrowser.org/oma/group/F1RN34/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6UWJ1-1", "protein_name": "Solute carrier family 9 member D1", "gene_name": "SLC9D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKVLGRSFFWVLFPVLPWAVQAVEHEEVAQRVIKLHRGRGVAAMQSRQWVRDSCRKLSGLLRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRALQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELLAAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTLLMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTVLLGMLVTQDVQLGLFMAVMPTLIQAGASASSSIVVEVLRILVLIGQILFSLAAVFLLCLVIKKYLIGPYYRKLHMESKGNKEILILGISAFIFLMLTVTELLDVSMELGCFLAGALVSSQGPVVTEEIATSIEPIRDFLAIVFFASIGLHVFPTFVAYELTVLVFLTLSVVVMKFLLAALVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGVISREVYLLILSVTTLSLLLAPVLWRAAITRCVPRPERRSSL", "length": 677 }, "evidence": [ { "id": "F1RN34", "url": "https://omabrowser.org/oma/group/F1RN34/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BH01-1", "protein_name": "Solute carrier family 9 member D1", "gene_name": "Slc9d1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKVLDQSLLWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWALDSCRRLTGLLRQKNVVLNKLKNAIRAVEKDTSLSGEEKLFQVHTFEIFQKELNESENSIFQAIYGLQRALQGDYRDVVNMKESSKQRLEALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEASSKQNMTKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRISLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLVGSARGDKEAGDIDYSTVLLGMLVMQDVQLGLFIAVMPTLIQAGAGASSSVVMEVLRILFLIGQILFSLAAVFLLCLVMKTYLIGPYYRKLHLESKGNKEILVLGVSAFTFLMLTVTELLDVSMELGCFLAGALVSSQGHMVTEEIMTYIEPIRDFLAIIFFASIGLHVFPTFVIYELTVLVFLTLSVVIMKFVLAVLVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGSRARRAGILSREVYLLILSVTTLSLLLAPVLWKAAITKCVPRPERRSSL", "length": 678 }, "evidence": [ { "id": "F1RN34", "url": "https://omabrowser.org/oma/group/F1RN34/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ZUN3-1", "protein_name": "K(+) efflux antiporter 4", "gene_name": "KEA4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRRCKNNTDKFSVITMRLLTLLLICTFFFFFSFAYSAESDNETDSVVTREINGTVVESNATSAKPREDSFADMIDRALEKEFPDNDQNEVPDPGSFNNSVADQQAVLETVARVKPKKNETKTKEEKSFFNLDNENGVEDTPRLIDRKDNVFIMSNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSAAKLRVVRAVAIPGGLLQIFLFMCLSGITASLCGGKLTEGIFVGAFLSMSSTAVVLKFLMERNSISALHGQITVGTLILQDCAVGLLFALLPVLGGTSGVLQGVLSMAKSLAILIAFLGALFVLSRTWVPWFLKLMTSLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHMHFLWNHVDILLAAVLLVIVIKTVVVAIVVKVFGYNNKTAVLVGMSLAQIGEFAFVLLSRASNLHLIESKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSSTEIGFKGELYHSESAKRISLMIQGSLHDS", "length": 592 }, "evidence": [ { "id": "F1RN34", "url": "https://omabrowser.org/oma/group/F1RN34/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "potassium:proton antiporter activity", "id": "GO:0015386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015386", "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "pmid": "" }, { "name": "protein-membrane adaptor activity", "id": "GO:0043495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043495", "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0051897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051897", "evidence": [ { "database": "UniProtKB", "id": "F1RN34", "url": "https://www.uniprot.org/uniprotkb/F1RN34" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, 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"url_external": "https://alphafold.ebi.ac.uk/entry/F1RK19" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RK19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK19" }, { "id": "PS51805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 156, "start_aa": "Lys", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 302, "end_pos": 304 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"yes" } }, { "uniprot_canonical_ac": "F1RGX2-1", "uniprot_ac": "F1RGX2", "uniprot_id": "F1RGX2_PIG", "mass": { "chemical_mass": 58758.0, "monoisotopic_mass": 58758.0 }, "refseq": { "ac": "XP_003481139", "name": "protein FAM234A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481139" }, "gene_names": [ { "name": "FAM234A", "type": "recommended", "evidence": [ { "id": "F1RGX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGX2" } ] }, { "name": "FAM234A", "type": "synonym", "evidence": [ { "id": "XP_003481139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481139" } ] } ], "protein_names": [ { "name": "Protein FAM234A", "type": "recommended", "evidence": [ { "id": "F1RGX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGX2/entry#names_and_taxonomy" } ] }, { "name": "Protein ITFG3", "type": "synonym", "evidence": [ { "id": "F1RGX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGX2/entry#names_and_taxonomy" } ] }, { "name": "protein FAM234A", "type": "synonym", "evidence": [ { "id": "XP_003481139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481139" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGX2", "url": "https://www.uniprot.org/uniprotkb/F1RGX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM234A", "url": "https://www.uniprot.org/uniprotkb/F1RGX2", "locus": { "chromosome": "3", "start_pos": 41410818, "end_pos": 41437203, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007980", "url": "https://www.ensembl.org/id/ENSSSCG00000007980" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007980", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007980", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738032", "url": "https://www.ncbi.nlm.nih.gov/gene/100738032", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738032", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738032", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FMFWGLM", "url": "https://omabrowser.org/oma/group/FMFWGLM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGX2", "url": "https://www.orthodb.org/?gene=F1RGX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21419", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21419", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21419:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21419:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23727", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23727", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481139", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481139", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FCT8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNS4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGX2", "url": "https://www.uniprot.org/uniprotkb/F1RGX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGX2-1", "url": "https://www.uniprot.org/uniprotkb/F1RGX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDHKDLEAEIHPLKNDDRKSQDSPGNPAPKEPNPKPAAPAGLSRCRTVAFFLSLFAFLLAVFVVSFVIPCPDRLASGTTWSVSYNAAVAYDFLATSDINKDRIQDVLFLYKNSDGGSNVSLACAEEGFSSPCTFVAAASGANGTILWERPAAQNGALVECTGPQPRGGEAPAACILLGRPGPFIAVNLVTGETLWTHPNSFGGNTSILSPLLWVPDVDADGAPDLLVLTREEKQVNGYIYSGSTGQLVGPPGSLGVDGTSGAILHVTRTGAPYVLLPCESSLCGFSVKGLYEKATGRDSLLKTDPLWEDMLNATSHQLRLHSWGAVRYVMTIPGKAGEDLLLVTSEACMLLDGQDLAPRWTLGAAQIHRKPVLGHYKPDTLAVVIENGTGTDRQILLLDLSSGAILWSQALRGLPRDPQPASLPTADHRSAFFFWGLHEPAGANQTDPRAAPHSLYLFHPTLPGVLLELASISAHIVASRVVLLEPGRHAACILLTGPASPDVPGLVSVAKYKVQDLVPSSRVIHLVQGGPDSDQAVRNRFSRLRYRSEA", "length": 551, "header": "tr|F1RGX2-1|F1RGX2_PIG Isoform 1 of Protein FAM234A OS=Sus scrofa OX=9823 GN=FAM234A PE=1 SV=1 CANONICAL=F1RGX2-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FCT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT8/entry", "sequence": { "sequence": "MTDHKDLEAEIHPLKNDDRKSQDSPGNPAPKEPNPKPAAPAGLSRCRTVAFFLSLFAFLLAVFVVSFVIPCPDRLASGTTWSVSYNAAVAYDFLATSDINKDRIQDVLFLYKNSDGGSNVSLACAEEGANGTILWERPAAQNGALVECTGPQPRGGEAPAACILLGRPGPFIAVNLVTGETLWTHPNSFGGNTSILSPLLWVPDVDADGAPDLLVLTREEKQVNGYIYSGSTGQLVGPPGSLGVDGTSGAILHVTRTGAPYVLLPCESSLCGFSVKGLYEKATGRDSLLKTDPLWEDMLNATSHQLRLHSWGAVRYVMTIPGKAGEDLLLVTSEACMLLDGQDLAPRWTLGAAQIHRKPVLGHYKPDTLAVVIENGTGTDRQILLLDLSSGAILWSQALRGLPRDPQPASLPTADHRSAFFFWGLHEPAGANQTDPRAAPHSLYLFHPTLPGVLLELASISAHIVASRVVLLEPGRHAACILLTGPASPDVPGLVSVAKYKVQDLVPSSRVIHLVQGGPDSDQAVRNRFSRLRYRSEA", "length": 538, "header": "tr|A0A8W4FCT8-1|F1RGX2_PIG Computationally mapped isoform of Protein FAM234A OS=Sus scrofa OX=9823 GN=FAM234A PE=1 SV=1 CANONICAL=F1RGX2-1" }, "locus": { "chromosome": "3", "start_pos": 41423988, "end_pos": 41412439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101500.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101500.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077131.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077131.1" } ] } }, { "isoform_ac": "A0A8W4FNS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNS4/entry", "sequence": { "sequence": "MTDHKDLEAEIHPLKNDDRKSQDSPGNPAPKEPNPKRQRRLSRCRTVAFFLSLFAFLLAVFVVSFVIPCPDRLASGTTWSVSYNAAVAYDFLATSDINKDRIQDVLFLYKNSDGGSNVSLACAEEGFSSPCTFVAAASGANGTILWERPAAQNGALVECTGPQPRGGEAPAACILLGRPGPFIAVNLVTGETLWTHPNSFGGNTSILSPLLWVPDVDADGAPDLLVLTREEKQVNGYIYSGSTGQLVGPPGSLGVDGTSGAILHVTRTGAPYVLLPCESSLCGFSVKGLYEKATGRDSLLKTDPLWEDMLNATSHQLRLHSWGAVRYVMTIPGKAGEDLLLVTSEACMLLDGQDLAPRWTLGAAQIHRKPVLGHYKPDTLAVVIENGTGTDRQILLLDLSSGAILWSQALRGLPRDPQPASLPTADHRSAFFFWGLHEPAGANQTDPRAAPHSLYLFHPTLPGVLLELASISAHIVASRVVLLEPGRHAACILLTGPASPDVPGLVSVAKYKVQDLVPSSRVIHLVQGGPDSDQAVRNRFSRLRYRSEA", "length": 549, "header": "tr|A0A8W4FNS4-1|F1RGX2_PIG Computationally mapped isoform of Protein FAM234A OS=Sus scrofa OX=9823 GN=FAM234A PE=1 SV=1 CANONICAL=F1RGX2-1" }, "locus": { "chromosome": "3", "start_pos": 41423988, "end_pos": 41412439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098705.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098705.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081147.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081147.1" } ] } }, { "isoform_ac": "F1RGX2-1", "url": "https://www.uniprot.org/uniprotkb/F1RGX2/entry", "sequence": { "sequence": "MTDHKDLEAEIHPLKNDDRKSQDSPGNPAPKEPNPKPAAPAGLSRCRTVAFFLSLFAFLLAVFVVSFVIPCPDRLASGTTWSVSYNAAVAYDFLATSDINKDRIQDVLFLYKNSDGGSNVSLACAEEGFSSPCTFVAAASGANGTILWERPAAQNGALVECTGPQPRGGEAPAACILLGRPGPFIAVNLVTGETLWTHPNSFGGNTSILSPLLWVPDVDADGAPDLLVLTREEKQVNGYIYSGSTGQLVGPPGSLGVDGTSGAILHVTRTGAPYVLLPCESSLCGFSVKGLYEKATGRDSLLKTDPLWEDMLNATSHQLRLHSWGAVRYVMTIPGKAGEDLLLVTSEACMLLDGQDLAPRWTLGAAQIHRKPVLGHYKPDTLAVVIENGTGTDRQILLLDLSSGAILWSQALRGLPRDPQPASLPTADHRSAFFFWGLHEPAGANQTDPRAAPHSLYLFHPTLPGVLLELASISAHIVASRVVLLEPGRHAACILLTGPASPDVPGLVSVAKYKVQDLVPSSRVIHLVQGGPDSDQAVRNRFSRLRYRSEA", "length": 551, "header": "tr|F1RGX2-1|F1RGX2_PIG Isoform 1 of Protein FAM234A OS=Sus scrofa OX=9823 GN=FAM234A PE=1 SV=1 CANONICAL=F1RGX2-1" }, "locus": { "chromosome": "3", "start_pos": 41423988, "end_pos": 41412439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054462.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054462.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043162.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043162.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCT8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCT8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738032", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738032", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M1PZ20-1", "protein_name": "Protein FAM234A", "gene_name": "fam234a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTDESGRGGEAEPLKDGEAEGGVTKEKSCAGKLGLSHLTGWRTAAFLLSIFLCLAVIFAFSFILPCPVRPQYVSTWNRTVPDAATFDFLAVEDANEDKVLDVFFIYRDADASRNTCLNADLSVPCLVLTAVDGTNGKSLWKRALSAEFDWVECGVKGLGHKGSGCLVAHADNLTAVDKKTGQIMWQHSRSTLMHGNLPLISVPDLNSDGKEDFAVLSYNPDALSFTPTPTELVFFSGKSGDQLGSRVNVDVNGVFAHLHFKTASGASYLLLLTDSGLYAVSLGRLAALAKPGFESALKKEKSWEELSDIHTGFISLYQSGFLKRVLAVQGSNPPSLLIQTDSSVSLLQTDKLKTAWTTNTSTLLSEPTFGQFDKDGIPDIMIEEDAGNQTKRVMVLSGHSGVVLWEVSLLFWPPSPRPASVLTLNTYSVFMLWGQTNQTSQMQSSFLLHPRYSKLLLERRKSSQNIVSFKATLLERGRHASYLVLTGPDGRRHTDDSEPVILTKRKIKKDVEESEVYGVTADELISQDAEDSVREAFHRLRFSEIQ", "length": 546 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0YYK8-1", "protein_name": "Family with sequence similarity 234 member A", "gene_name": "FAM234A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDNKDSEAEIHPLKTEDVKAQENHENSVERRIIIKQSSQLSRLSRWRTAAFFISLFLCLIIVFAFSFIIPCPERPVSERTWLRNYDNAVAYRFLAIEDVNEDKVQDVIFAFKASNGSSSFNSSCLDEGLPSPCAFITAVSGTNGRVLWERPAAMEVGWMQCGIKQLGGAPGCLLVGQPVALTAVDQRTGEVQWRQSDDFGANYTVLTPLSVIPDVDGDGVQDLIIFIATGDKIKTFIHSGKNGKQIGSTGSLNVDGEARYVMLSPGSSHYFLFYTANSLYAYSLKDLYSAATGMEIKLPGLEQDPQWEKNIDHTTHRLSPLSTGDIRYVAKIPGRSRENILLVSSETAMLISAQNLQTLWTLNVSRVMSEPLLGYYKPDVLDVVLESEIGPNRKKVMIVEGGSGAVQWDLKLNSRAESPRPATLSTADHRSTFLIWGEYQVAGNETISAAPLQKLYLFHPSYTNVLLELRNSTDQIVAFNATLFERSRHACYVLLRGPQPGEEPGLVSLMKRKLKEDVSESRVIWLSQVAVDSEQYIRDRLYRMRFLSRV", "length": 550 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HBS0-1", "protein_name": "Protein FAM234A", "gene_name": "Fam234a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDNKDLEAEIHPLKNEDRKSQENLGNQSKNEENLKSKPLQSRLSRCRTVAFFLSLFICFFVVFVISFIIPCPDRPSSQGTWRLDYNSAVPYHFLAMGDVNRDKIQDVLFLYKNTNSSNNFTRSCADEGFSTPCAFVAAVSGANGSVLWERPVAQDVALVKCAMPQPSDSEVSSACILVGRLGSFIAVNLFTGQTLWNHSSSLGGNASILSPLIQVPDVDGDGAPDLLILTREGQEVSGAIYSGSTGYQIGHRGSLGVDGNGGALLHVTRTGAHYILLPCASALCGFSVKGLYERVTGKDGQLKEDSYWENMLNSSAHRRLLHSSGAVRYLMNVPGKSGQDVLLVSSEACMLLDGQDLMPRWTLGATQVLRKPILGHYKPDTLAVVIENGTSIDRQILLLDLSTGSMLWSQSLPSLPGGPPSTSLMTADHRSAFFFWGLHELVGTNEMDPQDMQLSLYMFHPTLPGILLELANVSANIVAFDAILFEPSRHAAYVLLTGPASADMPGLVSVIKHKVRDLVPGSRVVHLGEGSSDSDQAIRDRFSRLRYRSEV", "length": 552 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2HJE5-1", "protein_name": "Protein FAM234A", "gene_name": "FAM234A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTDGKDLEAEIHPLKSENRKVPENAGALAGKEPRGTPAPQTRLSHCRTAAFFLSLFACLLVVFVVSFIIPCPDRPALQGVWRIDYNAAVAYDFLAAEDVNKDKIQDILFLYKNTNSSRGNSSFSCADEGFSCPCTFVAAVSGASGSVLWERPVAQDRAFVECGILQPRGSAAPSACVVLGRPGSLVAVDTLTGKTLWSQPSSFGGNASVLSPLLRVPDLDADGAPDLLVLIQEENQVNGSIYSGGTGQQVSPPDSLGVDGTSGSILHVTRAGAHYVLIPCGTALCSRSVKGLYEKVSRRDSPLKSDPLWEDMLSAASHRLVVHSSGAIRYLMNVPGKAGDDLLLVSTEAYMLLDGQDLTPRWTFGTTQVLRKPVLGYYKPDTPAVLVENGTGPDRQVLLLDLGSGAVLWSQALPGLPGDPPSASLPTADHRSAFFFWGIHEPTDSNQTEPGAAGRRLYMLHPTLPGVLLELDNVSVPIVAFQVVLLEPGRHAACILLTGPASPSPPGLVSVTKHKVQDLVLAGRVVHLAEGGAESDQAVRDRLSRLRYRSEA", "length": 552 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5M7W6-1", "protein_name": "Protein FAM234A", "gene_name": "Fam234a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMDDKDLEAEIHPLKNEDKKSQENLGNLPKTEDNLKNKPVPSRLSRCRTVAFFLSLFICLFVVFVLSFIIPCPDRPSSEDKWRLDYDYAVTYDFLALGDVDRDEVQDVLFLYKNTNSSNNSTRSCADEGFSTPCTFMAAVSGTNGTVLWERPLAQDVAHVKCAVPQTRDSKVSSACVLVGRLGSFMAVNFFTGETLWSHPRSFSGNASILSPLLQVPDIDGDGAPDLLMLSREGQEVSGALYSGSTGYQIGHRGSLGVDGDGVALLHVTRTGAQYILLPCASALCGVSVKGLYKRITGRDDHFKEDPSWENMLNRSAHRRLLHSSGAVRYLMNVPGKTGQDLLLVSSEDCKLLDGQDLVPRWTLGATQVLRKPILGHYKPDTLAVVIENGTSLDRQILLLDLSTGSMLWSQPLPSLPGAPPSTSLMTADHRSAFFFWGLHDPVSANEMDPQDTQHSLYMFHPTLPGILLELANVSANIVAFDAVLFEPSRHAAYVLLTGPASSDVPGLVSLTKHRVRDLVPGSRVIHLSEGSSDSDQAIRDRFSRLRYRSEV", "length": 552 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C0Z1-1", "protein_name": "Protein FAM234A", "gene_name": "Fam234a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDNKDLEAEIHPLKNEDKKSQENPGNLPRNEDNLKSKPVPSRLSRCRTVAFFLSLFTCLFVVFVLSFIIPCPDRPSSQGTWKLDYNNAVMYDFLALGDINKDKVQDVLFLYKNTNSSNNLTRSCADEGFSTPCAFVVAVSGANGSVLWERPVAQDVALVKCAMPQTLDSDEVSSACIVVGRAGSFVAVSFFTGETLWSHPSSFSGNVSILSPLLQVPDIDGDGDGTPDLLILAQEGQEVSGALYSGSTGYQIGHRGSLGVDGDGVALLHVTRTGAQYILLPCASALCGFSVKSLYERITGRDGHFKEDPYWENMLNHSVHRRLLHRLGAVRYLMNIPGKAGQDLLLVTSEACVLLDGQDLEPRWTLGEVQVLRKPILGHYKPDTLAVVIENGTSIDRQILLLDLSTGSILWSQPLPSLPGGPPSTSLMTADHRSAFFFWGLHDLVSTNEMDPPDVQHSLYMFHPTLPGILLELANVSANIVAFDAVLLEPSRHAAYVLLTGPASSDVPGLVSVTKHKVQDLVPGSRVIHLGEGSSDSDQAIRDRFSRLRYRSEM", "length": 555 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H0X4-1", "protein_name": "Protein FAM234A", "gene_name": "FAM234A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLDHKDLEAEIHPLKNEERKSQENLGNPSKNEDNVKSAPPQSRLSRCRAAAFFLSLFLCLFVVFVVSFVIPCPDRPASQRMWRIDYSAAVIYDFLAVDDINGDRIQDVLFLYKNTNSSNNFSRSCVDEGFSSPCTFAAAVSGANGSTLWERPVAQDVALVECAVPQPRGSEAPSACILVGRPSSFIAVNLFTGETLWNHSSSFSGNASILSPLLQVPDVDGDGAPDLLVLTQEREEVSGHLYSGSTGHQIGLRGSLGVDGESGFLLHVTRTGAHYILFPCASSLCGCSVKGLYEKVTGSGGPFKSDPHWESMLNATTRRMLSHSSGAVRYLMHVPGNAGADVLLVGSEAFVLLDGQELTPRWTPKAAHVLRKPIFGRYKPDTLAVAVENGTGTDRQILFLDLGTGAVLCSLALPSLPGGPLSASLPTADHRSAFFFWGLHELGSTSETETGEARHSLYMFHPTLPRVLLELANVSTHIVAFDAVLFEPSRHAAYILLTGPADSEAPGLVSVIKHKVRDLVPSSRVVRLGEGGPDSDQAIRDRFSRLRYQSEA", "length": 552 }, "evidence": [ { "id": "F1RGX2", "url": "https://omabrowser.org/oma/group/F1RGX2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RGX2", "url": "https://www.uniprot.org/uniprotkb/F1RGX2" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1RGX2", "url": "https://www.uniprot.org/uniprotkb/F1RGX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 388, "end_pos": 390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGX2" }, { "id": "PF23727", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23727" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM234A/B beta-propeller", "eco_id": "ECO_0000259", "start_pos": 81, "end_pos": 548, "start_aa": "Trp", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 143, "end_pos": 145 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 388, "end_pos": 390 }, { "start_pos": 445, "end_pos": 447 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8X9AEX3-1", "uniprot_ac": "A0A8X9AEX3", "uniprot_id": "A0A8X9AEX3_PIG", "mass": { "chemical_mass": 210203.0, "monoisotopic_mass": 210203.0 }, "refseq": {}, "gene_names": [ { "name": "KIAA1217", "type": "recommended", "evidence": [ { "id": "A0A8X9AEX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3" } ] } ], "protein_names": [ { "name": "KIAA1217", "type": "synonym", "evidence": [ { "id": "A0A8X9AEX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8X9AEX3", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIAA1217", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3", "locus": { "chromosome": "10", "start_pos": 50707054, "end_pos": 51205619, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011075", "url": "https://www.ensembl.org/id/ENSSSCG00000011075" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011075", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011075", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR022782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22741", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22741", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22741:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22741:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ARQ2", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUR1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA01", "url": "https://www.uniprot.org/uniprotkb/A0A287BA01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCU9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJF6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMQ6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AEX3", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AEX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEENESQKCEPSLPYSADSRQMQEQGKSNLQVTSLEDAECRRTKERLSNGNSRVSASKSSRNLPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGDAPSPFSRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDESRNVYYELNDVRNIQDRSLLKVYNKDPAHAFNHTPKAVNGNMRMQRELVYARGDGPGASRPGPSAAPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPVVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSGKNLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHIIAYHRTAIRSASAYCSPSLPAEMHMEQSLYRQKPRKYPESHLPTLGSKTPPASPHRVGDRLVDMHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSEDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQAFQKCSLTDVNSNSHAEPSRVDGHIKDTRPGATVPPKEKKNLEFFPEDVRKSEVEYENDPQMESRKVTAGALTPSNPKWERGMENSVSDAARTSEYKTDILMKENSTPTKGSLRDGRNFSQKNVSKVNASFPGVSPLEDEINKGPKNSGLQSPVSDPGNQKMNYGKTKGVSHQGQENTEKSYLPSAPRPSESTLRDVKTQDQEVPSAESGQVVLRPRGARHAHVTSQEEGETTPSSPTEDNSTTDNIAFMITKTAVQVLSTGEVLDIVSKQGEEVQTVNIDAKKEAAFRPAGAENEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMMEEKIEEEEEEESGDPVVQSNTVPKLPKEVAWGGPGAGQQAESTFQPPSHSGEARASGGREVNQTEQGNASQAHSPSSESQADGTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGALKQHKEAKRFEISRSQSEDTPQNTPRRPDRPGLESGALTSRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSGSSSRGPAASSPHLAQEACPQSLLVLDEAPTAPEPPSSIPSASRKGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPAFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHPLSFSLQTQNGRAAPPSFSSSPPSPASPTSLNQGAKSIRTVHTPSLTSYKAQNGSSSKATPSTAKETS", "length": 1930, "header": "tr|A0A8X9AEX3-1|A0A8X9AEX3_PIG Isoform 1 of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=1 CANONICAL=A0A8X9AEX3-1" }, "isoforms": [ { "isoform_ac": "A0A287ARQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARQ2/entry", "sequence": { "sequence": "AHGQMPTQNLEQGPQRPCCRRCMTEKGLLLSQNENKTPNIKTVELSQIGIAWSVFPLPFKYLLQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGDAPSPFSRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDESRNVYYELNDVRNIQDRSLLKVYNKDPAHAFNHTPKAVNGNMRMQRELVYARGDGPGASRPGPSAAPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPVVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSGKNLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHIIAYHRTAIRSASAYCSPSLPAEMHMEQSLYRQKPRKYPESHLPTLGSKTLVDMHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSEDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQAFQKCSLTDVNSNSHAEPSRVDGHIKDTRPGATVPPKEKKNLEFFPEDVRKSEVEYENDPQMESRKVTAGALTPSNPKWERGMENSVSDAARTSEYKTDILMKENSTPTKGSLRDGRNFSQKNVSKVNASFPGVSPLEDEINKGPKNSGLQSPVSDPGNQKMNYGKTKGVSHQGQENTEKSYLPSAPRPSESTLRDVKTQDQEVPSAESGQVVLRPRGARHAHVTSQEEGETTPSSPTEDNSTTDNIAFMITKTAVQVLSTGEVLDIVSKQGEEVQTVNIDAKKEAAFRPAGAENEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMMEEKIEEEEEEESGDPVVQSNTVPKLPKEVAWGGPGAGQQAESTFQPPSHSGEARASGGREVNQTEQGNASQAHSPSSESQADGTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGALKQHKEAKRFEISRSQSEDTPQNTPRRPDRPGLESGALTSRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSGSSSRGPAASSPHLAQEACPQSLLVLDEAPTAPEPPSSIPSASRKGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPAFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHPLSFSLQTQNGRAAPPSFSSSPPSPASPTSLNQGAKSIRTVHTPSLTSYKAQNGSSSKATPSTAKETS", "length": 1865, "header": "tr|A0A287ARQ2-1|A0A287ARQ2_PIG Computationally mapped isoform of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=4 SV=2 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 50868827, "end_pos": 50708226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054776.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054776.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046539.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046539.2" } ] } }, { "isoform_ac": "A0A287AUR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUR1/entry", "sequence": { "sequence": "MHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSEDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQAFQKCSLTDVNSNSHAEPSRVDGHIKDTRPGATVPPKEKKNLEFFPEDVRKSEVEYENDPQMESRKVTAGALTPSNPKWERGMENSVSDAARTSEYKTDILMKENSTPTKGSLRDGRNFSQKNVSKVNASFPGVSPLEDEINKGPKNSGLQSPVSDPGNQKMNYGKTKGVSHQGQENTEKSYLPSAPRPSESTLRDVKTQDQEVPSAESGQVVLRPRGARHAHVTSQEEGETTPSSPTEDNSTTDNIAFMITKTAVQVLSTGEVLDIVSKQGEEVQTVNIDAKKEAAFRPAGAENEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMMEEKIEEEEEEESGDPVVQSNTVPKLPKEVAWGGPGAGQQAESTFQPPSHSGEARASGGREVNQTEQGNASQAHSPSSESQADGTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGALKQHKEAKRFEISRSQSEDTPQNTPRRPDRPGLESGALTSRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSGSSSRGPAASSPHLAQEACPQSLLVLDEAPTAPEPPSSIPSASRKGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQVVLP", "length": 1287, "header": "tr|A0A287AUR1-1|A0A287AUR1_PIG Computationally mapped isoform of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=2 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 50778736, "end_pos": 50709402, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061368.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061368.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047851.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047851.2" } ] } }, { "isoform_ac": "A0A287BA01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA01/entry", "sequence": { "sequence": "MQRELVYARGDGPGASRPGPSAAPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPVVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSGKNLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHIIAYHRTAIRSASAYCSPSLPAEMHMEQSLYRQKPRKYPESHLPTLGSKTPPASPHRVGDRLVDMHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSEDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQAFQKCSLTDVNSNSHAEPSRVDGHIKDTRPGATVPPKEKKNLEFFPEDVRKSEVEYENDPQMESRKVTAGALTPSNPKWERGMENSVSDAARTSEYKTDILMKENSTPTKGSLRDGRNFSQKNVSKVNASFPGVSPLEDEINKGPKNSGLQSPVSDPGNQKMNYGKTKGVSHQGQENTEKSYLPSAPRPSESTLRDVKTQDQEVPSAESGQVVLRPRGARHAHVTSQEEGETTPSSPTEDNSTTDNIAFMITKTAVQVLSTGEVLDIVSKQGEEVQTVNIDAKKEAAFRPAGAENEEPVVCLDKKPVIIIFDEPMDIRSAYKRLSTIFEECDEELERMMMEEKIEEEEEEESGDPVVQSNTVPKLPKEVAWGGPGAGQQAESTFQPPSHSGEARASGGREVNQTEQGNASQAHSPSSESQADGTDDQFESPKKKFKFKFPKKQLAALTQAIRTGTKTGKKTLQVVVYEEEEEDGALKQHKEAKRFEISRSQSEDTPQNTPRRPDRPGLESGALTSRTDEIRKNTYRTLDSLEQTIKQLENTISEMSPKALVDTSGSSSRGPAASSPHLAQEACPQSLLVLDEAPTAPEPPSSIPSASRKGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQVVLP", "length": 1453, "header": "tr|A0A287BA01-1|A0A287BA01_PIG Computationally mapped isoform of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=2 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 50779341, "end_pos": 50709402, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045612.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045612.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052907.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052907.2" } ] } }, { "isoform_ac": "A0A8W4FCU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCU9/entry", "sequence": { "sequence": "MQTSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGDAPSPFSRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDESRNVYYELNDVRNIQDRSLLKVYNKDPAHAFNHTPKAVNGNMRMQRELVYARGDGPGASRPGPSAAPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPVVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSGKNLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHIIAYHRTAIRSASAYCSPSLPAEMHMEQSLYRQKPRKYPESHLPTLGSKTPPASPHRVGDRLVDMHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTRERMQAMEKQIASLTGLVQSALFKGPLTSNSKDASSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSEDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPAFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHPLSFSLQTQNGRAAPPSFSSSPPSPASPTSLNQGAKSIRTVHTPSLTSYKAQNGSSSKATPSTAKETS", "length": 1251, "header": "tr|A0A8W4FCU9-1|A0A8X9AEX3_PIG Computationally mapped isoform of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=1 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 51020782, "end_pos": 50708226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091697.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091697.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076678.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076678.1" } ] } }, { "isoform_ac": "A0A8W4FJF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJF6/entry", "sequence": { "sequence": "MEENESQKCEPSLPYSADSRQMQEQGKSNLQVTSLEDAECRRTKERLSNGNSRVSASKSSRNLPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGDAPSPFSRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDESRNVYYELNDVRNIQDRSLLKVYNKDPAHAFNHTPKAVNGNMRMQRELVYARGDGPGASRPGPSAAPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPVVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSGKNLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHIIAYHRTAIRSASAYCSPSLPAEMHMEQSLYRQKPRKYPESHLPTLGSKTPPASPHRVGDRLVDMHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQAFQKCSLTDVNSNSHAEPSRVDGHIKDTRPGATVPPKEKKNLEFFPEDVRKSEVEYENDPQMESRKGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPAFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHPLSFSLQTQNGRAAPPSFSSSPPSPASPTSLNQGAKSIRTVHTPSLTSYKAQNGSSSKATPSTAKETS", "length": 1361, "header": "tr|A0A8W4FJF6-1|A0A8X9AEX3_PIG Computationally mapped isoform of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=1 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 51031551, "end_pos": 50708226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098549.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098549.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078438.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078438.1" } ] } }, { "isoform_ac": "A0A8W4FMQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMQ6/entry", "sequence": { "sequence": "MEENESQKCEPSLPYSADSRQMQEQGKSNLQVTSLEDAECRRTKERLSNGNSRVSASKSSRNLPRRHTLGGPRSSKEILGMQTSEMDRKREAFLEHLKQKYPHHATAIMGHQERLRDQTRSPKLSHSPQPPNLGDPVEHLSEASGDSLEAMSEGDAPSPFSRGSRTRASLPVVRSTNQTKERSLGVLYLQYGDETKQLRMPNEITSADTIRALFVSAFPQQLTMKMLESPSVAIYIKDESRNVYYELNDVRNIQDRSLLKVYNKDPAHAFNHTPKAVNGNMRMQRELVYARGDGPGASRPGPSAAPHAIPNSPPSTPVPHSMPPSPSRIPYGGTRPVVVPGNATIPRDRLSSLPVSRSISPSPSAILERRDVKPDEDMSGKNLAMYRNEGFYADPYLYHEGRMSIASSHGGHPLDVPDHIIAYHRTAIRSASAYCSPSLPAEMHMEQSLYRQKPRKYPESHLPTLGSKTPPASPHRVGDRLVDMHAHHNAHGPPHTMQPDRVSPSRQAFKKEPGTLVYIEKPRTVPGLSGIVDLGPPLVEKQVFAYSTATIPKDRDTSEKMMKTTANKNHADGAGTPQVSGGKTLGALESSGPPGQPLPAGASAIHMSLLDMRRNVAELRLQLQQMRQLQLQNQELLRAMMRKAELEISSKVIETMKRLEDPVQRQRVLVEQDRQKYLQEEEKIVRKLCDLEDFVEDLKKDSASASRVVTLKDVEDGAFLLRQVGEAVASLKGEFPTLQNKMRAILRIEVEAVRFLKEEPHRLDSLLQRVRGMTDTLTMLRRHVTDGLLKGTDAAQAAQYVAMEKATAAEVLKTQEEGQPLPGAGVPGDVKSEVVPLTVHHAQSSPVVIQPSQLSSALLNPAQHLPGGTGPHPASPPAVTKEAAPAPQSPQMPVNGSSMQSLFIDEIHSMSAKNRAVSIEKAERKWEEKRQNLDHYNGKEFEKLLEEAQANIMKSIPNLEMPPASGPHPKGDAPVDKPELSEDSPNSEQDLDKLGGRSPPPPPPPPRRSYLPGSGLTTTRSGDVVYTSRKESTTTKTSSEDAGPSPQARTTKGPTEESASAWTPSPPPVTTSFSKEEEEEEEGDKIMAELQAFQKCSLTDVNSNSHAEPSRVDGHIKDTRPGATVPPKEKKGSTGTPQTSRMPVPMSSKNRPGSLDKPGKQSKLQDPRQYRQANGSAKKAGGDCKPAFPSLPASKIPALSPSSGKSSSLPSSSGDSSNFPNPPATKPSVPSNPLSPQTGRSAPSASLIPSVSNGSLKFQSPTHTGKGHPLSFSLQTQNGRAAPPSFSSSPPSPASPTSLNQGAKSIRTVHTPSLTSYKAQNGSSSKATPSTAKETS", "length": 1336, "header": "tr|A0A8W4FMQ6-1|A0A8X9AEX3_PIG Computationally mapped isoform of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=1 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 51031551, "end_pos": 50708226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098384.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098384.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080178.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080178.1" } ] } }, { "isoform_ac": "A0A8X9AEX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEX3/entry", "sequence": { "sequence": 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"length": 1930, "header": "tr|A0A8X9AEX3-1|A0A8X9AEX3_PIG Isoform 1 of KIAA1217 OS=Sus scrofa OX=9823 GN=KIAA1217 PE=1 SV=1 CANONICAL=A0A8X9AEX3-1" }, "locus": { "chromosome": "10", "start_pos": 51031551, "end_pos": 50708226, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012119.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012119.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011811.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011811.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1711, "start_aa": "Thr", "end_pos": 1711, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1711", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1922, "start_aa": "Thr", "end_pos": 1922, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1922", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCU9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A8X9AEX3", 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Classification" ] }, { "id": "IPR014710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041667", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041667", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056520", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056520", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519765", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519765", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KASYQEC", "url": "https://omabrowser.org/oma/group/KASYQEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RFF8", "url": "https://www.orthodb.org/?gene=F1RFF8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12461:SF106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12461:SF106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24472", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24472", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9629569", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005653081", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653081", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "56744", "url": "https://www.rhea-db.org/rhea/56744", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AA58", "url": "https://www.uniprot.org/uniprotkb/A0A287AA58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA58-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD55", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FD55-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFF8-1", "url": "https://www.uniprot.org/uniprotkb/F1RFF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGSGALWEALRGLLPPAKEELQLALGEKVDSSVVMLLQEAAELFYGGRTLECLQTCEALLDYSWEKLNTGPWQHVDKDWRRVYAFGCLLKAVCLCAPPGDAASVAAALKACDLGLLMGAAILGDILLKVAALLQRHLPSGKRPAPGPSREPPSAKKARSDHVSIPDVGSERAVPRLHRPSLQYFREHFLVPGRPVILEGVATHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQALMTVSEFISKHIENEPRDVGYLAQHQLFDQIPELKQDISIPDYCCLGDGDEEEITINAWFGPRGTVSPLHQDPQQNFLTQVMGRKYIRLYSPQESEALYPHDTHLLHNTSQVDVENPDVEKFPRFAEAPFLACVLCPGEMLFIPVKYWHYVRALDLSFSVSFWWS", "length": 406, "header": "tr|F1RFF8-1|F1RFF8_PIG Isoform 1 of Bifunctional peptidase and arginyl-hydroxylase JMJD5 OS=Sus scrofa OX=9823 GN=KDM8 PE=4 SV=2 CANONICAL=F1RFF8-1" }, "isoforms": [ { "isoform_ac": "A0A287AA58-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA58/entry", "sequence": { "sequence": "THRPPMGGSGALWEALRGLLPPAKEELQLALGEKVDSSVVMLLQEAAELFYGGRTLECLQTCEALLDYSWEKLNTGPWQHVDKDWRRVYAFGCLLKAVCLCAPPGDAASVAAALKACDLGLLMGAAILGDILLKVAALLQRHLPSGKRPAPGPSREPPSAKKARSDHVSIPDVGSERAVPRLHRPSLQYFREHFLVPGRPVILEGVATHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQALMTVSEFISKHIENEPRDVGYLAQHQLFDQIPELKQDISIPDYCCLGDGDEEEITINAWFGPRGTVSPLHQDPQQNFLTQVMGRKYIRLYSPQESEALYPHDTHLLHNTSQVDVENPDVEKFPRFAEAPFLACVLCPGEMLFIPVKYWHYVRALDLSFSVSFWWS", "length": 411, "header": "tr|A0A287AA58-1|A0A287AA58_PIG Computationally mapped isoform of Bifunctional peptidase and arginyl-hydroxylase JMJD5 OS=Sus scrofa OX=9823 GN=KDM8 PE=4 SV=2 CANONICAL=F1RFF8-1" }, "locus": { "chromosome": "3", "start_pos": 19668088, "end_pos": 19654222, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063361.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063361.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040891.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040891.3" } ] } }, { "isoform_ac": "A0A8W4FD55-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD55/entry", "sequence": { "sequence": "THRPPMGGSGALWEALRGLLPPAKEELQLALGEKVDSSVVMLLQEAAELFYGGRTLECLQTCEALLDYSWEKLNTGPWQHVDKDWRRVYAFGCLLKAVCLCAPPGDAASVAAALKACDLGLLMGAAILGDILLKVAALLQRHLPSGKRPAPGPSREPPSAKVDVENPDVEKFPRFAEAPFLACVLCPGEMLFIPVKYWHYVRALDLSFSVSFWWS", "length": 215, "header": "tr|A0A8W4FD55-1|F1RFF8_PIG Computationally mapped isoform of Bifunctional peptidase and arginyl-hydroxylase JMJD5 OS=Sus scrofa OX=9823 GN=KDM8 PE=4 SV=1 CANONICAL=F1RFF8-1" }, "locus": { "chromosome": "3", "start_pos": 19668088, "end_pos": 19654222, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096221.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096221.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076783.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076783.1" } ] } }, { "isoform_ac": "F1RFF8-1", "url": "https://www.uniprot.org/uniprotkb/F1RFF8/entry", "sequence": { "sequence": "MGGSGALWEALRGLLPPAKEELQLALGEKVDSSVVMLLQEAAELFYGGRTLECLQTCEALLDYSWEKLNTGPWQHVDKDWRRVYAFGCLLKAVCLCAPPGDAASVAAALKACDLGLLMGAAILGDILLKVAALLQRHLPSGKRPAPGPSREPPSAKKARSDHVSIPDVGSERAVPRLHRPSLQYFREHFLVPGRPVILEGVATHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQALMTVSEFISKHIENEPRDVGYLAQHQLFDQIPELKQDISIPDYCCLGDGDEEEITINAWFGPRGTVSPLHQDPQQNFLTQVMGRKYIRLYSPQESEALYPHDTHLLHNTSQVDVENPDVEKFPRFAEAPFLACVLCPGEMLFIPVKYWHYVRALDLSFSVSFWWS", "length": 406, "header": "tr|F1RFF8-1|F1RFF8_PIG Isoform 1 of Bifunctional peptidase and arginyl-hydroxylase JMJD5 OS=Sus scrofa OX=9823 GN=KDM8 PE=4 SV=2 CANONICAL=F1RFF8-1" }, "locus": { "chromosome": "3", "start_pos": 19668071, "end_pos": 19654222, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008567.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008567.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008347.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008347.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FD55", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FD55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519765", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519765", "resource": "KEGG Pathway" }, { "id": "R-SSC-9629569", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "resource": "Reactome", "description": "Protein hydroxylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YTT4-1", "protein_name": "JmjC domain-containing protein 5", "gene_name": "KDM8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGASGLWAEARALLPGSEEELSLALSGEVDECVPPLLLRARALLYEAAPPCEAALRRLGDVLRDYAWEKLNAGPWRDVSKAWRQVYAYGCLFGALAEVAARRPLAPAARLCDMGLLMGASVQDNVLARLVRLLQAHLPRADRRGAAPSSAKRARTESPPAPVVRPEDTVPHERCPSLEHFRDRYLIPQKPVVLEGIIDHWPCMKKWSVDYVRQVAGCRTVPVELGSRYTDEEWSQKLMTVNDFINQYIVNENSVGYLAQHQLFDQIPELKEDISIPDYCCLGEGEEDDITINAWFGPAGTISPLHQDPQQNFLAQVFGRKYIRLCSPQDSENLYPHESQLLHNTSQVDVEDPDLTKFPNFRKVAFQSCILMPGQVLFIPVKYWHYIRSLDISFSVSFWWS", "length": 401 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A8E534-1", "protein_name": "Lysine-specific demethylase 8", "gene_name": "kdm8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASVWTDIRAVLPSTVSEFPLDFSEKIDLSVLKCLELSRDQLYSEADCPVSAERAQIIIDYSWEKLNIGTWRDVDKEWRRVYSYGCLFKVLSLCHGNPPQNIIQEAVRTCDMSLLMGAAIMDNILQRLVGILRNKIKTTCPNKAERSEEPFSKKRKHDCKSEPVLNPTKEVPRIHCPSLERFRSDFLDPKKPVIIEGITDLWPAFTQHPWSIDYLRTVAGCRTVPIEVGSKYTDEEWSQKLITVNDFIDRYITGTEEDGVGYLAQHQLFDQVPELKEDIRIPDYCCLGEGDEDDITINAWFGPGGTVSPLHQDPQQNFLAQVVGRKYIRLYSPEDTKSLYPHESQLLHNTSQVEVENPDLVKFPDFSRASYEECVLCPGDVLFIPLQHWYYVRSLELSFSVSFWWS", "length": 406 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1JP61-1", "protein_name": "Bifunctional peptidase and arginyl-hydroxylase JMJD5", "gene_name": "KDM8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGPSTLWETLQALLPHTKEELKLELGEKVEGSVLMLLQEAAELFLGGQRRECLQTCEVLLDYSWEKLNTGPWQHVDKDWRRVYAFGCLLKAVCLCEPPGDAASVAAALKACDMGLLMGAAILGDILLKVAAVLQKYLLSGKRPAPGPSQEPPGTKKARNDHVPIPDVTTERTVPRLHCPSLQYFKKHFLVPGRPVILEGVANHWPCMKKWSLEYIQEVAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIREEPKDIGYLAQHQLFDQIPELKQDISIPDYCCLGDGEEEEITINAWFGPQGTVSPLHQDPQQNFLAQVMGRKYIRLYSPQESEALYPHDTHLLHNTSQVDVENPDLEKFPRFAEAPFLSCVLSPGEVLFIPVKHWHYVRALDLSFSVSFWWS", "length": 406 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q497B8-1", "protein_name": "Bifunctional peptidase and arginyl-hydroxylase JMJD5", "gene_name": "Kdm8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEDTTEPLVGPSTLWKDLRALLPDTEEELKLDLSEKVDRSMATLLRQALGLFYEGRWQKCLQASEAVLDYSWEKLNTGPWRDVDKEWRRVYSFGCLLKTLCLCQAPQKATAVAEALRVCDMGLLMGAAILGDILLKVATVLQTHLLPRKQPACGPHQDQPATKKAKHDASSTPDVVLDREVPRLRCPPLQHFKKHFLVPGRPVILEGVADHWPCMKKWSLQYIQEIAGCRTVPVEVGSRYTDEDWSQTLMTVNEFIHKYILSEAKDVGYLAQHQLFDQIPELKQDISIPDYCCLGNGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVLGRKYIRLYSPQESEAVYPHETHILHNTSQVDVENPDLEKFPKFTEAPFLSCILSPGDTLFIPAKYWHYVRSLDLSFSVSFWWS", "length": 414 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N371-1", "protein_name": "Bifunctional peptidase and arginyl-hydroxylase JMJD5", "gene_name": "KDM8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGDTHCPAEPLAREGTLWEALRALLPHSKEDLKLDLGEKVERSVVTLLQRATELFYEGRRDECLQSSEVILDYSWEKLNTGTWQDVDKDWRRVYAIGCLLKALCLCQAPEDANTVAAALRVCDMGLLMGAAILGDILLKVAAILQTHLPGKRPARGSLPEQPCTKKARADHGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS", "length": 416 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8RWR1-1", "protein_name": "Lysine-specific demethylase JMJ30", "gene_name": "JMJ30", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSGATTASSGDHNNLRLPTPTLDAESQTLLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKIHFAAGEFGEALGALDMGLIMGGMLLRKDLHDSVLLVSSEARKMTKSLEEASGDFKGERLVPEVPVDVNEVRHVLANLQLLVLKILPCRSLTCKRVEKRSGLSLEGFLRDYYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWKQELVTFSKFLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPSFLQDELYPYSETMLCNSSQVDLDNIDETEFPKAMELEFMDCILEEGEMLYIPPKWWHYVRSLTMSLSVSFWWSNEAESSSS", "length": 429 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CXT6-1", "protein_name": "Bifunctional peptidase and arginyl-hydroxylase JMJD5", "gene_name": "Kdm8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEDTTEPLVGSSTLWKELRTLLPDKEEELKLDLGEKVDRSVAALLRQAVGLFYAGHWQGCLQASEAVLDYSWEKLNTGPWRDVDKEWRRVYSFGCLLKALCLCQAPQKATTVVEALRVCDMGLLMGAAILEDILLKVVAVLQTHQLPGKQPARGPHQDQPATKKAKCDASPAPDVMLERMVPRLRCPPLQYFKQHFLVPGRPVILEGVADHWPCMKKWSLQYIQEIAGCRTVPVEVGSRYTDEDWSQTLMTVDEFIQKFILSEAKDVGYLAQHQLFDQIPELKRDISIPDYCCLGNGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVLGRKYIRLYSPQESEAVYPHETHILHNTSQVDVENPDLEKFPKFTEAPFLSCILSPGDTLFIPAKYWHYVRSLDLSFSVSFWWS", "length": 414 }, "evidence": [ { "id": "F1RFF8", "url": "https://omabrowser.org/oma/group/F1RFF8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "rhythmic process", "id": "GO:0048511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048511", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "protein destabilization", "id": "GO:0031648", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031648", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "G2/M transition of mitotic cell cycle", "id": "GO:0000086", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000086", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "peptidyl-arginine 3-dioxygenase activity", "id": "GO:0106157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106157", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "histone H3K36 demethylase activity", "id": "GO:0051864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051864", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "endopeptidase activity", "id": "GO:0004175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004175", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "aminopeptidase activity", "id": "GO:0004177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004177", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" }, { "name": "p53 binding", "id": "GO:0002039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002039", "evidence": [ { "database": "UniProtKB", "id": "F1RFF8", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "56744", "name": "", "equation": "L-arginyl-[protein] + 2-oxoglutarate + O2 = (3R)-3-hydroxy-L-arginyl-[protein] + succinate + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "56744", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/56744" } ] }, { "id": "R-SSC-9629888", "name": "KDM8:Fe2+ hydroxylates an arginine residue of RCCD1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-9629873" ], "output_participant_list": [ "R-SSC-9629871" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9629888", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629888" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-9629871", "participant_name": "RCCD1 [cytosol]", "crossref": [ { "id": "A0A5K1URH4", "database": "UniProt", "url": "" }, { "id": "XP_001927570.2", "database": "RefSeq", "url": "" }, { "id": "XP_013852301.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000027473", "database": "ENSEMBL", "url": "" }, { "id": "92177", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000031481", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000001822", "database": "ENSEMBL", "url": "" }, { "id": "XP_013852307.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9629873", "participant_name": "RCCD1 [cytosol]", "crossref": [ { "id": "A0A5K1URH4", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000001822", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000027473", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000031481", "database": "ENSEMBL", "url": "" }, { "id": "XP_001927570.2", "database": "RefSeq", "url": "" }, { "id": "XP_013852307.1", "database": "RefSeq", "url": "" }, { "id": "XP_013852301.1", "database": "RefSeq", "url": "" }, { "id": "92177", "database": "VGNC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RFF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFF8" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 406, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 349, "end_pos": 351 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGZ6-1", "uniprot_ac": "F1RGZ6", "uniprot_id": "F1RGZ6_PIG", "mass": { "chemical_mass": 46160.0, "monoisotopic_mass": 46160.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF200", "type": "recommended", "evidence": [ { "id": "F1RGZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGZ6" } ] } ], "protein_names": [ { "name": "Zinc finger 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"TMAAKVVPMHPKPKRSFVLRVPPNSKLGQDLLRDATSGSKTIHQLVLEHFLTFLPKPSLVQPSQKVKETLVIMKDVSSNLQNTVQPHPLVKLLPREGIQQKQETGSPCLKAQPEELVVFEDLNVFHSQEECISLDPAQQRTSEMEEDNIGEMILLAVSDGNAEGEDLQKEPVENEDHRAKSSDCDETDCSVVSEQPPDCQKEGRLNMPAPKERKLKNLLVTIENDSPLEELSKYVDINVIALTRNRRTRRWYTCPLCGKQFNESSYLISHQRTHTGEKPYDCSHCGKSFNHKTNLNKHERIHTGEKPYSCSQCGKNFRQNSHRSRHEGIHIREKIFKCPECGKTFPENKEFVIHLQSHEAERPYGCKKCGRRFGRLSNCTRHEKTHSACKTRKQKWDRDGPAST", "length": 404, "header": "tr|F1RGZ6-1|F1RGZ6_PIG Isoform 1 of Zinc finger protein 200 OS=Sus scrofa OX=9823 GN=ZNF200 PE=3 SV=4 CANONICAL=F1RGZ6-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FDQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDQ0/entry", "sequence": { "sequence": "TMAAKVVPMHPKPKRSFVLRVPPNSKLGQDLLRDATSGSKTIHQLVLEHFLTFLPKPSLVQPSQKVKETLVIMKDVSSNLQNTVQPHPLVKLLPREGIQQKQETGSPCLKAQPEELVVFEDLNVFHSQEECISLDPAQQRTSEMEEDNIGEMILLVSDGNAEGEDLQKEPVENEDHRAKSSDCDETDCSVVSEQPPDCQKEGRLNMPAPKERKLKNLLVTIENDSPLEELSKYVDINVIALTRNRRTRRWYTCPLCGKQFNESSYLISHQRTHTGEKPYDCSHCGKSFNHKTNLNKHERIHTGEKPYSCSQCGKNFRQNSHRSRHEGIHIREKIFKCPECGKTFPENKEFVIHLQSHEAERPYGCKKCGRRFGRLSNCTRHEKTHSACKTRKQKWDRDGPAST", "length": 403, "header": "tr|A0A8W4FDQ0-1|F1RGZ6_PIG Computationally mapped isoform of Zinc finger protein 200 OS=Sus scrofa OX=9823 GN=ZNF200 PE=3 SV=1 CANONICAL=F1RGZ6-1" }, "locus": { "chromosome": "3", "start_pos": 38970714, "end_pos": 38953738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099758.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099758.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076435.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076435.1" } ] } }, { "isoform_ac": "F1RGZ6-1", "url": 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"glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FDQ0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDQ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": 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"https://www.uniprot.org/uniprotkb/F1RGZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein localization to nucleus", "id": "GO:0034504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034504", "evidence": [ { "database": "UniProtKB", "id": "F1RGZ6", "url": "https://www.uniprot.org/uniprotkb/F1RGZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RGZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 404, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"https://www.ensembl.org/id/ENSSSCP00000033800.2" } ] } }, { "isoform_ac": "F1RHJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RHJ4/entry", "sequence": { "sequence": "MELPLAQIGAQGSREAPAVTFSTFQPMDLNRRSCQGLGSLPGPRLQAPKAEEAQPSPRAPTVHVAAPGATCSPKDIGKAEEMPREEALSLQAETLAWFQKTQAHELLQHGEAPAWFHGFITRREAERLLETEPQGCYLVRFSESAVTFVLTYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHYTAGPLSPYGEKLTEPLPRQTPEPVGLSLRTEESDSGSKSQDSQPQYSPILKKEQSAAFKQKEGAGEPKEPTQPPRPKPRIPARPHLPPEVYTSPAPRPRPTPPHKPSNPIYHEPDEPIAFYAMGRGSPGEAPSNIYAEVEVKVPDSGGESPPRILRHEVLRKCQSRPVLGSQNPGSQQLHSQNSVAEPGLPLPHQPLPRWGHTLPHNLPRQVLQDRGQAWLPLGPPQ", "length": 417, "header": "tr|F1RHJ4-1|F1RHJ4_PIG Isoform 1 of SH2 domain containing 2A OS=Sus scrofa OX=9823 GN=SH2D2A PE=4 SV=2 CANONICAL=F1RHJ4-1" }, "locus": { "chromosome": "4", "start_pos": 93292259, "end_pos": 93282506, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007083.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007083.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006891.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006891.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 291, "start_aa": "Thr", "end_pos": 291, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr291", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQC3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153265", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153265", "resource": "KEGG Pathway" }, { "id": "R-SSC-4420097", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "resource": "Reactome", "description": "VEGFA-VEGFR2 Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5I0Q2-1", "protein_name": "SH2 domain containing 2A", "gene_name": "Sh2d2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEFCLAQTCPQGNHEATSPTFSTFQPMNLTQGRCQDLGCGGKPSMQALREQEVQLSPRVTHTVASASAPGAAWVLESVNREEEEPGKGELSLQAETRAWVQKTQAHWLLLRTAPLWFHGFITRREAERLLQSQPLGCYLVRFSESAVTFVLSYRSRTCCRHFLLAQLGDGRHVVLGEDSAHSQLQDLLQHYTECPLSPYGEMLTQPLARQTAEPAGLSLRGESDSGSRRQDPDTQHSLFIQQGQAHAQAPGHKEKVRASQQKKTSQASRPRPPIPAKPQLPLEVYTSPAPRPHQALPINPVYQEPDEPIAFYAMGRGSPGDAPSNIYAEVDGPREMLPIGHPTLHKCWSRPISGGQGKGVQGKKSSRRPAGRGSPS", "length": 376 }, "evidence": [ { "id": "F1RHJ4", "url": "https://omabrowser.org/oma/group/F1RHJ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NP31-1", "protein_name": "SH2 domain-containing protein 2A", "gene_name": "SH2D2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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GN=RCBTB2 PE=4 SV=5 CANONICAL=F1RK15-1" }, "isoforms": [ { "isoform_ac": "A0A286ZR57-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR57/entry", "sequence": { "sequence": "MEEDFLLVYGGRVKMPEKDGGGEADMSKAVKPVRATPSSLKMLDVGKWPIFSLCSEEELQLVRQACVFGSAGNEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLSGKKIACLSYGSGPHVVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKTVVNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSGGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVIVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPNTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEGNEDEIVEMSEFSYPVYRAFLEYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQDLEEFCFRFCVNHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN", "length": 568, "header": "tr|A0A286ZR57-1|F1RK15_PIG Computationally mapped isoform of RCC1 and BTB domain containing protein 2 OS=Sus scrofa OX=9823 GN=RCBTB2 PE=4 SV=2 CANONICAL=F1RK15-1" }, "locus": { "chromosome": "11", "start_pos": 19181136, "end_pos": 19133684, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044201.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044201.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034063.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034063.2" } ] } }, { "isoform_ac": "F1RK15-1", "url": "https://www.uniprot.org/uniprotkb/F1RK15/entry", "sequence": { "sequence": "MEEDFLLVYGGRVKPVRATPSSLKMLDVGKWPIFSLCSEEELQLVRQACVFGSAGNEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLSGKKIACLSYGSGPHVVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKTVVNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSGGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVIVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVTLPHLTHFSSTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPNTADLKFLVDGKYIYAHKVLLKIRCEHFRSSLEGNEDEIVEMSEFSYPVYRAFLEYLYTDSISLSPEEAVGLLDLATFYRENRLKKLCQQTIKQGICEENAIALLSAAVKYDAQDLEEFCFRFCVNHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN", "length": 551, "header": "tr|F1RK15-1|F1RK15_PIG Isoform 1 of RCC1 and BTB domain containing protein 2 OS=Sus scrofa OX=9823 GN=RCBTB2 PE=4 SV=5 CANONICAL=F1RK15-1" }, "locus": { "chromosome": "11", "start_pos": 19181136, "end_pos": 19133684, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010299.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010299.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010031.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010031.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 19, "start_aa": "Thr", "end_pos": 19, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 301, "start_aa": "Thr", "end_pos": 301, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr301", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZR57", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "F1RK15", "url": "https://www.uniprot.org/uniprotkb/F1RK15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RK15-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 551, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RK15-F1.pdb", "url_external": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003124138" }, "gene_names": [ { "name": "ARHGEF37", "type": "recommended", "evidence": [ { "id": "F1RL91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL91" } ] }, { "name": "ARHGEF37", "type": "synonym", "evidence": [ { "id": "XP_003124138", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124138" } ] } ], "protein_names": [ { "name": "Rho guanine nucleotide exchange factor 37", "type": "recommended", "evidence": [ { "id": "F1RL91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL91/entry#names_and_taxonomy" } ] }, { "name": "rho guanine nucleotide exchange factor 37", "type": "synonym", "evidence": [ { "id": "XP_003124138", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124138" } ] } ], "function": [ { "annotation": "Probable guanine nucleotide exchange factor (GEF) involved in clathrin-mediated endocytosis, probably playing a role in the late stages of the process.", "evidence": [ { "database": "UniProtKB", "id": "F1RL91", "url": "https://www.uniprot.org/uniprotkb/F1RL91#function" }, { "database": "UniProtKB", "id": "ARBA00094151", "url": "https://www.uniprot.org/uniprotkb/ARBA00094151#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RL91", "url": "https://www.uniprot.org/uniprotkb/F1RL91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGEF37", "url": "https://www.uniprot.org/uniprotkb/F1RL91", "locus": { "chromosome": "2", "start_pos": 150747220, "end_pos": 150660685, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014436", "url": "https://www.ensembl.org/id/ENSSSCG00000014436" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014436", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014436", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07589", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07589", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11799", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11799", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514827", "url": "https://www.ncbi.nlm.nih.gov/gene/100514827", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035823", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035823", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514827", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514827", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FLCFRPH", "url": "https://omabrowser.org/oma/group/FLCFRPH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RL91", "url": "https://www.orthodb.org/?gene=F1RL91", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22834", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22834", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22834:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22834:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03114", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03114", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124138", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124138", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZSB3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL91", "url": "https://www.uniprot.org/uniprotkb/F1RL91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL91-1", "url": "https://www.uniprot.org/uniprotkb/F1RL91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPADDELSSRTGSPDGEGLVSEDRSLLHQRLAVRELVDTEASYLHVLQLCASDIRGRLQQLPQEDLDVLFSNIDDVIKVNSRLLRDLQDAASRGEEQVRLVGDVFLEFQEELEQVYKVYCASYEQALLLVENYQKDPELQRGIQRTIEAVLPQAGPSGLSFLLVNPLQRVTKYPLLLQKILENTLPDASAYPVLQRAASALQDVVTHINEYKRRKEVASRYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQEAGLVPKLEDKEFDDLEEKFHCVSLCVTELKSNVAAHLDALEVLLRFRPHESHLDIPGGPVAQYGDLARDLQLQAFPQFKQRLEGLVWQPLCSLAKALAGPQNLIRKRLDKLLDFERAEEKLSEVGSVTYEEEAARHTYQALNSLLVAELPQFNQLAVQWLRQILCTLVTLQGDLAKHVLQRAESSLAQLPHHHLSEPAFRDLVADTLDQAGHQLRSFQENFEKVLPPPTTRPLLPGAERQVQALLSRYGSGKLYQVTSNISGSGTLDLTLPRGHVVALLQNKDTKGNSSRWLVDTGGHRGYVPAGKLELYRVAPSEEDLRGQAKPHENSRQLTPEPTLAPVPSVPAVTQVVAVCPFAARSSHEVSLQAGQQVTVLEAQDKKGNPEWSLVEVNGQRGYVPSSFLARVPGPAPWGWSLPS", "length": 675, "header": "tr|F1RL91-1|F1RL91_PIG Isoform 1 of Rho guanine nucleotide exchange factor 37 OS=Sus scrofa OX=9823 GN=ARHGEF37 PE=4 SV=4 CANONICAL=F1RL91-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSB3/entry", "sequence": { "sequence": "MAEPADDELSSRTGSPDGEGLVSEDRSLLHQRLAVRELVDTEASYLHVLQLCASDIRGRLQQLPQEDLDVLFSNIDDVIKVNSRLLRDLQDAASRGEEQVRLVPQAGPSGLSFLLVNPLQRVTKYPLLLQKILENTLPDASAYPVLQRAASALQDVVTHINEYKRRKEVASRYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQEAGLVPKLEDKEFDDLEEKFHCVSLCVTELKSNVAAHLDALEVLLRFRPHESHLDIPGGPVAQYGDLARDLQLQAFPQFKQRLEGLVWQPLCSLAKALAGPQNLIRKRLDKLLDFERAEEKLSEVGSVTYEEEAARHTYQALNSLLVAELPQFNQLAVQWLRQILCTLVTLQGDLAKHVLQRAESSLAQLPHHHLSEPAFRDLVADTLDQAGHQLRSFQENFEKVLPPPTTRPLLPGAERQVQALLSRYGSGKLYQVTSNISGSGTLDLTLPRGHVVALLQNKDTKGNSSRWLVDTGGHRGYVPAGKLELYRVAPSEEDLRGQAKPHENSRQLTPEPTLAPVPSVPAVTQVVAVCPFAARSSHEVSLQAGQQVTVLEAQDKKGNPEWSLVEVNGQRGYVPSSFLARVPGPAPWGWSLPS", "length": 625, "header": "tr|A0A286ZSB3-1|F1RL91_PIG Computationally mapped isoform of Rho guanine nucleotide exchange factor 37 OS=Sus scrofa OX=9823 GN=ARHGEF37 PE=4 SV=3 CANONICAL=F1RL91-1" }, "locus": { "chromosome": "2", "start_pos": 150735501, "end_pos": 150695373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036763.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036763.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034361.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034361.3" } ] } }, { "isoform_ac": "F1RL91-1", "url": "https://www.uniprot.org/uniprotkb/F1RL91/entry", "sequence": { "sequence": "MAEPADDELSSRTGSPDGEGLVSEDRSLLHQRLAVRELVDTEASYLHVLQLCASDIRGRLQQLPQEDLDVLFSNIDDVIKVNSRLLRDLQDAASRGEEQVRLVGDVFLEFQEELEQVYKVYCASYEQALLLVENYQKDPELQRGIQRTIEAVLPQAGPSGLSFLLVNPLQRVTKYPLLLQKILENTLPDASAYPVLQRAASALQDVVTHINEYKRRKEVASRYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQEAGLVPKLEDKEFDDLEEKFHCVSLCVTELKSNVAAHLDALEVLLRFRPHESHLDIPGGPVAQYGDLARDLQLQAFPQFKQRLEGLVWQPLCSLAKALAGPQNLIRKRLDKLLDFERAEEKLSEVGSVTYEEEAARHTYQALNSLLVAELPQFNQLAVQWLRQILCTLVTLQGDLAKHVLQRAESSLAQLPHHHLSEPAFRDLVADTLDQAGHQLRSFQENFEKVLPPPTTRPLLPGAERQVQALLSRYGSGKLYQVTSNISGSGTLDLTLPRGHVVALLQNKDTKGNSSRWLVDTGGHRGYVPAGKLELYRVAPSEEDLRGQAKPHENSRQLTPEPTLAPVPSVPAVTQVVAVCPFAARSSHEVSLQAGQQVTVLEAQDKKGNPEWSLVEVNGQRGYVPSSFLARVPGPAPWGWSLPS", "length": 675, "header": "tr|F1RL91-1|F1RL91_PIG Isoform 1 of Rho guanine nucleotide exchange factor 37 OS=Sus scrofa OX=9823 GN=ARHGEF37 PE=4 SV=4 CANONICAL=F1RL91-1" }, "locus": { "chromosome": "2", "start_pos": 150735501, "end_pos": 150695373, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015781.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015781.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015365.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015365.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZSB3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514827", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514827", "resource": "KEGG Pathway" }, { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XSL8-1", "protein_name": "Rho guanine nucleotide exchange factor 37", "gene_name": "ARHGEF37", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASTHAEEPLAEDTADHDAHIYEEVMLSERMEHSQRLAVEELITTEASYVHNLQLCLSDIRAHLQKKQLPGLDLEGLFSNIDDILHVSRRFLRGLQDTATQEHEQLLSISTLFQEFKEEMEMVYKIYCASYEHALLLVESYRKDPRLQEEIMDTLTATVPHTSASDLSFFLVMPVQRVTKYPLLLGKILENTPANTSTHEALAAAVRAMTQVNANINEYKRRREVATKYNKAEQLTLRDRFARLNTHSIAKKTTRLSRLLMHEAGIVAKTEDKEYDELEEKFQSVASSVTALKENVASYLQHLEAFLLPTPHRCELQMEEGPAQQYRRFAEHLHRAVFPEFRRRLDRLVWKPLCRLAEMLVGPQQLVKKRLDKLLDYEEIQERKSETGSVTYDEEAAMNTYLAINALLVAELPRFNQVAMQLLGQLLGSFSVLQQDLATEVLHEAKKEVEQMPHGHMLLPAFWRMVEDTLQQSGVQLRTFIQAFETVTPSPLLQPLNPAEERKVLSLVSKHGPDKLYQVTSNVSGSKDMDLTLQRGQIVALLQSVDTKGNTGRWLVDAGGPRGFVPAAKLQPYSLGPSQQPKMQMPALESGTERRRHSYVSPEAPKPQVATFTPAFQVVAGFSFTARSPQELSLQAGQPVVVLEPHDKKGSTEWSLVEVNGQRGYVPSSYLLTVPVQEPVGWSLPV", "length": 686 }, "evidence": [ { "id": "F1RL91", "url": "https://omabrowser.org/oma/group/F1RL91/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1IGU3-1", "protein_name": "Rho guanine nucleotide exchange factor 37", "gene_name": "Arhgef37", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADFETDEASSKSESPEQEGQGSEDKSLLHQRLAIRELIDTEVSYLHTLRLCTSDIRGHLQQLPPGDLDILFSNIDDIIQVSSRFLHGLQETACKEEKQAHLIGNLFLEFQEELEQVYKVYCANYDQALLLVKAYQKEPELQKEIQGIIEAAVPQAGPSGLSFLLVIPLQRITKYPLLLQKILENTPADASAHPVLQRATSALQDVNSNINEYKMRKEVALKYTKVEQLSLRERLARINTHTLSKKTTRLSQLLKQEAGLVPRTEDKEFDDLEERFQWVSLCVTELKSNVAAYMDNLEAFLCFRPHERNLDIPGGAAEQYCSLARDLQLQAFLQFKQRLTGLVWQPLCSLARALVGPQNLIKKRLDKLLDFERVEEKLLDVGSVTYEEEAARHTYQALNSLIVAELPQFNHLVMQWLGQILRTFVVLQRDLADQVLRRAESSMALLPHRHVSEPDFQKLLEDTLGQSSSQLRHFRESFEKVLPPSTSQPLLPGSEHQMQSLLTRYGPGKIYQVTSNINGTGTLDLTLPRGQIVALLQNKDTKGNNSRWLVDTGGHRGYVPAGKLQLYHPINPSEKEPRRQTGMPEDYWLPTPEPTQPSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQDKKGNPEWSLVEANGQRGYVPSNFLARTPSPTPRGWNLPS", "length": 676 }, "evidence": [ { "id": "F1RL91", "url": "https://omabrowser.org/oma/group/F1RL91/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1IGU4-1", "protein_name": "Rho guanine nucleotide exchange factor 37", "gene_name": "Arhgef37", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADFGADEASSKSESPEQEDQGSEDRSLLHQRLAIRELIDTEVSYLHTLRLCASDIRSHLQQLPPGDLDILFSNIDDIIQVSSRFLRGLQETACREEEQAHLIGNLFLEFQEEFEQVYKVYCANYDQALLLVKAYQKEPELQKEIQGIIEAAMPQAGPSGLSFFLVIPLQRITKYPLLLQKILENTPADASAHPALQRATSALQDVNGNINEYKMRKEVALKYTKVEQLSLRERLARINTHTLSKKTTRLSQMLKQEAGLVSRTEDKEFDDLEERFQWVSLCVKELRNNVVDFMGNLEVFLSFRPHERSLDIPGGPAEQYCSLARDLQLHAFLQFKQRLRSLVWQPLCSLARALAGPQNLIKKRLDKLLDFDRVEEKLLDVGSVTWEEEAARHEYQALNSLLVAELPQFNQLVMQWLGQILCTFVVLQRDLADQVLRRAESTMALLPHHHVSEPDFQKLLEHTLGQSSSQLRLFQESFEKVLPPSTTQPLLPGSEHQMQALLTRYGPEKLYQVSSNINGTGTLDLTLLRGQIVALLQNKDTKGNNSRWLVDTGGHRGYVPAGKLQLYHPIIPSEKELRGQTGTHEDSWLPAPEPTQLSVPTVPTMSQVVAVYPFVARSTHELSLQAGQPVTILEAQDKKGNPEWSLVEANGQRGYVPSNFLARTPSPTPWGWNLPS", "length": 676 }, "evidence": [ { "id": "F1RL91", "url": "https://omabrowser.org/oma/group/F1RL91/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A1IGU5-1", "protein_name": "Rho guanine nucleotide exchange factor 37", "gene_name": "ARHGEF37", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKHGADEPSSRSGSPDREGRASEDRSLLHQRLAVRELIDTEVSYLHMLQLCASDIRSRLQQLPQGDLDVLFSNIDDIIKVNSRFLHDLQETASKEEEQVQLVGNIFLEFQEELEQVYKVYCASYDQALLLVDTYRKEPELQRHIQGIVEAVVPQAGSSGLSFLLVIPLQRITRYPLLLQKILENTVPDASAYPVLQRAVSALQDVNTNINEYKMRKEVASKYTKVEQLTLRERLARINTHTLSKKTTRLSQLLKQEAGLIPRTEDKEFDDLEERFQWVSLCVTELKNNVAAYLDNLQAFLYFRPHEYNLDIPEGPAVQYCNLARDLHLEAFLKFKQRLEGLVWQPLCSLAKALLGPQNLIKKRLDKLLDFERVEEKLLEVGSVTYQEEAARHTYQALNSLLVAELPQFNQLVMQWLGQIMCTFVTLQRDLAKQVLQRAEGSMAQLPHHHVPEPAFRKLVEDALGRTSNQLRSFQETFEKVQPPPTTQPLLPGSERQVQALLSRYGPGKLYQVTSNISGTGTLDLTLPRGQIVAILQNKDTKGNSGRWLVDTGGHRGYVPAGKLQLYHVVPSAEELRRQAGLNKDPRCLTPEPSPALVPSIPTMNQVIAAYPFVARSSHEVSLQAGQPVTILEAQDKKGNPEWSLVEVNGQRGYVPSGFLARARSPVLWGWSLPS", "length": 675 }, "evidence": [ { "id": "F1RL91", "url": "https://omabrowser.org/oma/group/F1RL91/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1MJ96-1", "protein_name": "Rho guanine nucleotide exchange factor 37", "gene_name": "ARHGEF37", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTNHGDDALSSRTGAPDGDDRLSEDRSLLQQRLAVRELIDTEVSYLHVLQLCASDIRSRLQQLPQGDLDVLFSNIDDIIKVNSRLLHDLQETASREEEQVQLIGNAFLEFQEELEQVYKVYCASYEQALLLVETYRKEPELQREIQGIIEAVLPQAGPSGLSFLLVIPLQRITKYPLLLQKILENTLPDASAYAVLQRATSALQDVVTNINEYKRRKEVASKYTKVEPLSLRERLARINTHTLSKKTTRLSQLLKQEAGLVPRTEDKEFDDLEERFHWVSLCVTELKSNVAAYLDNLEAFLRFRPQDYNLEIPEGPVVQYCYLARDLQLQAFPEFKQQLEAQVWQPLCSLAKALAGPQNLIKKRLDKLLDFERVEEKLLEVGSVTYEEEAARHTYQALNSLLVAELPQFNQLAMRWLGQILCTFVTLQRDLAKQVLQRAEDSLAQLPHHHLSEPAFRKLVEDALGQTSHQLRSFQENFEKVLPPPTTQPLLPGAERQVQALLSRYPGKLYQVTSNISGAGTLDLTLPRGHIVALLQNKDTKGNSSRWLVDTGGHRGYVPAGKLEVYHVVPSEEEERPHRDSQHQTPEPISAPVPSVPAVTQVVAMYPFMARSSHEVSLQAGQRVTVLEAQDKKGNPEWSLVEVNGQRGYVPSSFLARAPSPAPWGWSLPS", "length": 670 }, "evidence": [ { "id": "F1RL91", "url": "https://omabrowser.org/oma/group/F1RL91/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RL91", "url": "https://www.uniprot.org/uniprotkb/F1RL91" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1RL91", "url": "https://www.uniprot.org/uniprotkb/F1RL91" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "clathrin-dependent endocytosis", "id": "GO:0072583", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072583", "evidence": [ { "database": "UniProtKB", "id": "F1RL91", "url": "https://www.uniprot.org/uniprotkb/F1RL91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RL91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL91" }, { "id": "PS51021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAR", "eco_id": "ECO_0000259", "start_pos": 254, "end_pos": 455, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RL91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL91" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 213, "start_aa": "His", "end_aa": "Tyr", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RL91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL91" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 602, "end_pos": 665, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 516, "end_pos": 518 }, { "start_pos": 544, "end_pos": 546 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RKW7-1", "uniprot_ac": "F1RKW7", "uniprot_id": "F1RKW7_PIG", "mass": { "chemical_mass": 52781.0, "monoisotopic_mass": 52781.0 }, "refseq": { "ac": "XP_020923110", "name": "BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923110" }, "gene_names": [ { "name": "ZNF207", "type": "recommended", "evidence": [ { "id": "F1RKW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ] }, { "name": "ZNF207", "type": "synonym", "evidence": [ { "id": "XP_020923110", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923110" } ] } ], "protein_names": [ { "name": "BUB3-interacting and GLEBS motif-containing protein ZNF207 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020923110", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923110" } ] }, { "name": "Zinc finger protein 207", "type": "synonym", "evidence": [ { "id": "F1RKW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKW7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF207", "url": "https://www.uniprot.org/uniprotkb/F1RKW7", "locus": { "chromosome": "12", "start_pos": 42576532, "end_pos": 42612396, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017732", "url": "https://www.ensembl.org/id/ENSSSCG00000017732" } ] } } ], "crossref": [ { "id": "F1RKW7", "url": "https://alphafold.ebi.ac.uk/entry/F1RKW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20908", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20908", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521516", "url": "https://www.ncbi.nlm.nih.gov/gene/100521516", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521516", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521516", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZT20", "url": "https://www.orthodb.org/?gene=A0A286ZT20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287AD24", "url": "https://www.orthodb.org/?gene=A0A287AD24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RKW7", "url": "https://www.orthodb.org/?gene=F1RKW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23215:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23215:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020923110", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923110", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZT20", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZT20-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9L4", "url": "https://www.uniprot.org/uniprotkb/A0A287A9L4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9L4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA44", "url": "https://www.uniprot.org/uniprotkb/A0A287AA44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD24", "url": "https://www.uniprot.org/uniprotkb/A0A287AD24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AD24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD24-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA63", "url": "https://www.uniprot.org/uniprotkb/A0A287BA63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKW7-1", "url": "https://www.uniprot.org/uniprotkb/F1RKW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQAESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 495, "header": "tr|F1RKW7-1|F1RKW7_PIG Isoform 1 of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=1 SV=5 CANONICAL=F1RKW7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZT20-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT20/entry", "sequence": { "sequence": "MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 478, "header": "tr|A0A286ZT20-1|F1RKW7_PIG Computationally mapped isoform of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=1 SV=2 CANONICAL=F1RKW7-1" }, "locus": { "chromosome": "12", "start_pos": 42602629, "end_pos": 42585928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045827.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045827.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034624.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034624.2" } ] } }, { "isoform_ac": "A0A287A9L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9L4/entry", "sequence": { "sequence": "MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQVSCSLKSLKLSEIVLQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 479, "header": "tr|A0A287A9L4-1|A0A287A9L4_PIG Computationally mapped isoform of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=1 SV=3 CANONICAL=F1RKW7-1" }, "locus": { "chromosome": "12", "start_pos": 42602629, "end_pos": 42585928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058932.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058932.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040690.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040690.3" } ] } }, { "isoform_ac": "A0A287AA44-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA44/entry", "sequence": { "sequence": "VAVSLLCYFCTLTIVIRYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 497, "header": "tr|A0A287AA44-1|A0A287AA44_PIG Computationally mapped isoform of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=1 SV=2 CANONICAL=F1RKW7-1" }, "locus": { "chromosome": "12", "start_pos": 42601381, "end_pos": 42585928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062289.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062289.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040876.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040876.2" } ] } }, { "isoform_ac": "A0A287AD24-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AD24/entry", "sequence": { "sequence": "MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQAESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 464, "header": "tr|A0A287AD24-1|A0A287AD24_PIG Computationally mapped isoform of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=1 SV=3 CANONICAL=F1RKW7-1" }, "locus": { "chromosome": "12", "start_pos": 42602629, "end_pos": 42585928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064234.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064234.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041714.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041714.3" } ] } }, { "isoform_ac": "A0A287BA63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA63/entry", "sequence": { "sequence": "MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLFPLQCFFSAGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQVSCSLKSLKLSEIVLQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 450, "header": "tr|A0A287BA63-1|A0A287BA63_PIG Computationally mapped isoform of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=4 SV=2 CANONICAL=F1RKW7-1" }, "locus": { "chromosome": "12", "start_pos": 42602629, "end_pos": 42585928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060795.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060795.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053226.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053226.2" } ] } }, { "isoform_ac": "F1RKW7-1", "url": "https://www.uniprot.org/uniprotkb/F1RKW7/entry", "sequence": { "sequence": "MGRKKKKQLKPWCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIPEKDMDERRRLLEQKTQAESQKKKQQDDSDEYDDDDSAASTSFQPQPVQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGLHHQRKYTQSFCGENIMMPMGGMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMTQSQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMGTPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATSKLIHPDEDISLEERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPPQPGIPQQQGMRPPMPPHGQYGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRPPVMSQGGRY", "length": 495, "header": "tr|F1RKW7-1|F1RKW7_PIG Isoform 1 of Zinc finger protein 207 OS=Sus scrofa OX=9823 GN=ZNF207 PE=1 SV=5 CANONICAL=F1RKW7-1" }, "locus": { "chromosome": "12", "start_pos": 42602629, "end_pos": 42585928, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019299.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019299.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018787.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018787.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 257, "start_aa": "Thr", "end_pos": 257, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr257", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZT20", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521516", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521516", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "spindle matrix", "id": "GO:1990047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990047", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "attachment of spindle microtubules to kinetochore", "id": "GO:0008608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008608", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "mitotic spindle assembly", "id": "GO:0090307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090307", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "mitotic spindle assembly checkpoint signaling", "id": "GO:0007094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007094", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" }, { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "F1RKW7", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 325, "end_pos": 327, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RKW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 495, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RKW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RKW7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RKW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKW7" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 34, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 257 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 325, "end_pos": 327 }, { "start_pos": 354, "end_pos": 356 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FRN5-1", "uniprot_ac": "A0A8W4FRN5", "uniprot_id": "A0A8W4FRN5_PIG", "mass": { "chemical_mass": 49549.0, "monoisotopic_mass": 49549.0 }, "refseq": {}, "gene_names": [ { "name": "HOMEZ", "type": "recommended", "evidence": [ { "id": "A0A8W4FRN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5" } ] } ], "protein_names": [ { "name": "Homeobox and leucine zipper protein Homez", "type": "recommended", "evidence": [ { "id": "A0A8W4FRN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5/entry#names_and_taxonomy" } ] }, { "name": "Homeodomain leucine zipper-containing factor", "type": "synonym", "evidence": [ { "id": "A0A8W4FRN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May function as a transcriptional regulator.", "evidence": [ { "database": "UniProtKB", "id": "I3LJG9", "url": "https://www.uniprot.org/uniprotkb/I3LJG9#function" }, { "database": "UniProtKB", "id": "ARBA00059151", "url": "https://www.uniprot.org/uniprotkb/ARBA00059151#function" }, { "database": "UniProtKB", "id": "A0A8W4FRN5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FRN5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HOMEZ", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5", "locus": { "chromosome": "7", "start_pos": 75798026, "end_pos": 75789185, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028190", "url": "https://www.ensembl.org/id/ENSSSCG00000028190" } ] } } ], "crossref": [ { "id": "A0A8W4FRN5", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FRN5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028190", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028190", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155262", "url": "https://www.ncbi.nlm.nih.gov/gene/100155262", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155262", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155262", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3LJG9", "url": "https://www.orthodb.org/?gene=I3LJG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15467", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15467", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15467:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15467:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FRN5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FRN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJG9", "url": "https://www.uniprot.org/uniprotkb/I3LJG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJG9-1", "url": "https://www.uniprot.org/uniprotkb/I3LJG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRGWEPPPGPDSAISEGHKSESTMPPNKEASSLNSSPAGLICLPPISEELQLVWTQAAQTSELDGNEHLLQTFSYFPYPSLADIALLCLRYGLQMEKVKTWFMAQRLRCGISWSSEEIEETRARVVYHRDQLHFKSLLSFTHHAGRPPEEVPPSPMPPPEQVGLGIVPLTLSEPTQKKGLKVLANGATATSKPLQPLGCIPQPPSPKEQALPPHLEPAWPQGLRHNSAPGRVGPAEYLSPDMQRQRKTKRKTKEQLAILKSFFLQCQWARREDYHKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDNAVPGAPSFQDPAIPTPPPSTRSLNDWAETPPLPNPPPPPDIRPLERYWSTHQQLRQSDIPQLSQASRLSTQQVLDWFDSRLPEPAEVVVCLDEEEEEEEEELPEDCEDEEEEEEDDDDDDDDVIIQD", "length": 438, "header": "tr|A0A8W4FRN5-1|A0A8W4FRN5_PIG Isoform 1 of Homeobox and leucine zipper protein Homez OS=Sus scrofa OX=9823 GN=HOMEZ PE=4 SV=1 CANONICAL=A0A8W4FRN5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FRN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRN5/entry", "sequence": { "sequence": "MVRGWEPPPGPDSAISEGHKSESTMPPNKEASSLNSSPAGLICLPPISEELQLVWTQAAQTSELDGNEHLLQTFSYFPYPSLADIALLCLRYGLQMEKVKTWFMAQRLRCGISWSSEEIEETRARVVYHRDQLHFKSLLSFTHHAGRPPEEVPPSPMPPPEQVGLGIVPLTLSEPTQKKGLKVLANGATATSKPLQPLGCIPQPPSPKEQALPPHLEPAWPQGLRHNSAPGRVGPAEYLSPDMQRQRKTKRKTKEQLAILKSFFLQCQWARREDYHKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDNAVPGAPSFQDPAIPTPPPSTRSLNDWAETPPLPNPPPPPDIRPLERYWSTHQQLRQSDIPQLSQASRLSTQQVLDWFDSRLPEPAEVVVCLDEEEEEEEEELPEDCEDEEEEEEDDDDDDDDVIIQD", "length": 438, "header": "tr|A0A8W4FRN5-1|A0A8W4FRN5_PIG Isoform 1 of Homeobox and leucine zipper protein Homez OS=Sus scrofa OX=9823 GN=HOMEZ PE=4 SV=1 CANONICAL=A0A8W4FRN5-1" }, "locus": { "chromosome": "7", "start_pos": 75796858, "end_pos": 75789361, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103009.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103009.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081343.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081343.1" } ] } }, { "isoform_ac": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RI74-1", "uniprot_ac": "F1RI74", "uniprot_id": "F1RI74_PIG", "mass": { "chemical_mass": 77540.0, "monoisotopic_mass": 77540.0 }, "refseq": { "ac": "XP_005657350", "name": "zinc finger protein 605", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657350" }, "gene_names": [ { "name": "ZNF605", "type": "recommended", "evidence": [ { "id": "F1RI74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ] }, { "name": "ZNF605", "type": "synonym", "evidence": [ { "id": "XP_005657350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657350" } ] } ], "protein_names": [ { "name": "Zinc finger protein 605", "type": "synonym", "evidence": [ { "id": "F1RI74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI74/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 605", "type": "synonym", "evidence": [ { "id": "XP_005657350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657350" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGV1#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF605", "url": "https://www.uniprot.org/uniprotkb/F1RI74", "locus": { "chromosome": "14", "start_pos": 22635698, "end_pos": 22614134, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000052289", "url": "https://www.ensembl.org/id/ENSSSCG00000052289" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155634", "url": "https://www.ncbi.nlm.nih.gov/gene/100155634", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155634", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155634", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LKHPFEF", "url": "https://omabrowser.org/oma/group/LKHPFEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RI74", "url": "https://www.orthodb.org/?gene=F1RI74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF455", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF455", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3214841", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005657350", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657350", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FGV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI74-1", "url": "https://www.uniprot.org/uniprotkb/F1RI74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKSQISFEDVAVDFTLEEWQLLNPTQKNLYRDVMLENYSSLVFLGYQIIKPDTIFKLEQEDPWILDEEILSQSFPEEVWLDNNLKMWHQDNQDKLESLERAHEYDIFGKLFHSSINFVHLGMRSHKCGTGEKSLKHPFDFLIPKNNSEKKKLDEFNKKLLFCIKADRAYGGVKYSDCNKCRKVSSKEPGLVSNHAGVCLCMECGKVFNKKSQLIIHQRTHTGEKPYGCHDCGKAFSQKSLLTIHQRTHSGEKPYGCGECQKAFSRKSLLILHQRTHTGEKPYGCSECGKAFSRKSQLKRHQITHTVEKPYGCSDCGKAFSQKLKLITHQRTHTGEKPYKCSDCGKAFFWKSQLITHQRIHTGKKPYACSECKKAFSRNSLLIRHQRIHTGEKPYECSECGEAFIRKPQLVKHQMTHTGEKNYQCSNCEEAFFKKSELIRHQKIHLGEKPYGCIECGKTFFGKSQLLTHQRTHTGEKPYECSACGKAFTQKSSLISHQRTHTGEKPYKCSECGKTFSEKSSLIHHQRTHTGEKPFQCSECRKAFAWKPQLLRHQRIHTGEKPYECTECGKAFVQKVQLIKHQRNHTGEKTYGCGDCAKAFFEKAQLIIHQRIHTGERPYKCGECGKSFTRKSHLMRHQRIHTGDKYYGCSECGVTFHRKAQLLVHQRSHVL", "length": 671, "header": "tr|F1RI74-1|F1RI74_PIG Isoform 1 of Zinc finger protein 605 OS=Sus scrofa OX=9823 GN=ZNF605 PE=3 SV=3 CANONICAL=F1RI74-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGV1/entry", "sequence": { "sequence": "MIKSQISFEDVAVDFTLEEWQLLNPTQKNLYRDVMLENYSSLVFLEEVWLDNNLKMWHQDNQDKLESLERAHEYDIFGKLFHSSINFVHLGMRSHKCGTGEKSLKHPFDFLIPKNNSEKKKLDEFNKKLLFCIKADRAYGGVKYSDCNKCRKVSSKEPGLVSNHAGVCLCMECGKVFNKKSQLIIHQRTHTGEKPYGCHDCGKAFSQKSLLTIHQRTHSGEKPYGCGECQKAFSRKSLLILHQRTHTGEKPYGCSECGKAFSRKSQLKRHQITHTVEKPYGCSDCGKAFSQKLKLITHQRTHTGEKPYKCSDCGKAFFWKSQLITHQRIHTGKKPYACSECKKAFSRNSLLIRHQRIHTGEKPYECSECGEAFIRKPQLVKHQMTHTGEKNYQCSNCEEAFFKKSELIRHQKIHLGEKPYGCIECGKTFFGKSQLLTHQRTHTGEKPYECSACGKAFTQKSSLISHQRTHTGEKPYKCSECGKTFSEKSSLIHHQRTHTGEKPFQCSECRKAFAWKPQLLRHQRIHTGEKPYECTECGKAFVQKVQLIKHQRNHTGEKTYGCGDCAKAFFEKAQLIIHQRIHTGERPYKCGECGKSFTRKSHLMRHQRIHTGDKYYGCSECGVTFHRKAQLLVHQRSHVL", "length": 640, "header": "tr|A0A8W4FGV1-1|F1RI74_PIG Computationally mapped isoform of Zinc finger protein 605 OS=Sus scrofa OX=9823 GN=ZNF605 PE=3 SV=1 CANONICAL=F1RI74-1" }, "locus": { "chromosome": "14", "start_pos": 22633775, "end_pos": 22619956, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101664.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101664.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078549.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078549.1" } ] } }, { "isoform_ac": "F1RI74-1", "url": "https://www.uniprot.org/uniprotkb/F1RI74/entry", "sequence": { "sequence": "MIKSQISFEDVAVDFTLEEWQLLNPTQKNLYRDVMLENYSSLVFLGYQIIKPDTIFKLEQEDPWILDEEILSQSFPEEVWLDNNLKMWHQDNQDKLESLERAHEYDIFGKLFHSSINFVHLGMRSHKCGTGEKSLKHPFDFLIPKNNSEKKKLDEFNKKLLFCIKADRAYGGVKYSDCNKCRKVSSKEPGLVSNHAGVCLCMECGKVFNKKSQLIIHQRTHTGEKPYGCHDCGKAFSQKSLLTIHQRTHSGEKPYGCGECQKAFSRKSLLILHQRTHTGEKPYGCSECGKAFSRKSQLKRHQITHTVEKPYGCSDCGKAFSQKLKLITHQRTHTGEKPYKCSDCGKAFFWKSQLITHQRIHTGKKPYACSECKKAFSRNSLLIRHQRIHTGEKPYECSECGEAFIRKPQLVKHQMTHTGEKNYQCSNCEEAFFKKSELIRHQKIHLGEKPYGCIECGKTFFGKSQLLTHQRTHTGEKPYECSACGKAFTQKSSLISHQRTHTGEKPYKCSECGKTFSEKSSLIHHQRTHTGEKPFQCSECRKAFAWKPQLLRHQRIHTGEKPYECTECGKAFVQKVQLIKHQRNHTGEKTYGCGDCAKAFFEKAQLIIHQRIHTGERPYKCGECGKSFTRKSHLMRHQRIHTGDKYYGCSECGVTFHRKAQLLVHQRSHVL", "length": 671, "header": "tr|F1RI74-1|F1RI74_PIG Isoform 1 of Zinc finger protein 605 OS=Sus scrofa OX=9823 GN=ZNF605 PE=3 SV=3 CANONICAL=F1RI74-1" }, "locus": { "chromosome": "14", "start_pos": 22633775, "end_pos": 22619956, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010669.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010669.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010392.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010392.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGV1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155634", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155634", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" }, { "id": "R-SSC-3214841", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "resource": "Reactome", "description": "PKMTs methylate histone lysines" } ], "orthologs": [ { "uniprot_canonical_ac": "E9QAH2-1", "protein_name": "Zinc finger protein 605", "gene_name": "Zfp605", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTESRISFEDVAVDFSWDQWQLLSPTQKSLYRDVMLENCSSLVFLGNQTTKPDVTFKLDQQESRIMDEECLSQNFLEIWLDSYSELWLQDEQDKPKRMERGNGDNVLEEVCHSSMNSVYLEMRFHICGTCGKNLKSPLNFFIPKGNRVRKKSKVSKKLLFYLKFDKPYSKRKCHDCNKYRKANSNESQLVTKQRTHSGIFLCMECGRIFNKKSQLIVHQRNHTEEKPCQCNGYGKTFAQKSQLAIHQKTHSGEEPERQKAFGGKSLGLQQQRTHTGQKPYARGKTYSRKPTQNRPAMSHAVHKPYRCGDCGEVFSQKLKLIIHRSTHPGEKPYKCSECRKAFFWNSQLITHRRSHRGKKPYVCSECEKAFRRNSLLIRHQRIHTGEKPHRSRECGEAFIGKPQLAKHHMTHTGEKKCYGFEEVFFKKSKLMRHQKSHLGEKPNRCAEFGKIFPEKSQLLTHQKSHSGERPYRCAECGKTFPGRSSLLSHQRTHTGEKPYKCNLCGRAFSQRSSIISHQRTHTGEKPFKCGDCGKAFTEKSNLLHHKRTHTGEKPFGCSDCGKAFAWKPHLLQHQRIHTGEKPFECSECGKAFVQKVQLIKHQRHHTGEKIYKCSSCEKAFFEKTQLTIHQKIHTGERPYTCGECGRSFTRNSHLMRHKPIHTRDKCYRCSQCGSIFNKKSHLIRHQKDHIIKAV", "length": 694 }, "evidence": [ { "id": "F1RI74", "url": "https://omabrowser.org/oma/group/F1RI74/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1M278-1", "protein_name": "Zinc finger protein 605", "gene_name": "Zfp605", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMESSKISFEDVAVDFSWDEWQLLSPTQKSLYRDVMLENCSSLVFLGNQTIKPDVAFKLDQEESRIMDEEILTQNFLEIWLNSNSEPWPQDKQDKLKRMERGNGDNVLEKLFQPSMNSVYLEMRFHICGTSEKNVKNPLNFFILKSNCGRIKSKVSKKLLFYLKFDRSYSKRKFHDCNKYRKANSNESQLVTNQMTHSGIYLCMECGRIFNKKSQLTVHQRNHTGEKPYQCNGCGKTFAQKSLLALHQKSHSVEPDGCDERQKAFSGKSLVIQQQRTHAGQKLCTHGKAYSRKSQQNRQEMIHTMGKPYRCSDCGKAFSQKLKLIIHRRTHTGEKPYKCSECRKAFFWNSQLITHQRSHRGKKPYVCSKCKKAFRRNSLLIRHQRIHAVEKPQRSRECGEAFIRKAQLTKHRMTHTGEKSYQCYDCEEAFFKKSQLMRHQKSHLGERPLRCTECGKTFPEKSQLLTHQKSHLEERPLRCTECGKTFPEKLQLLTHQKSHLGERPHRCTECGKTFPEKLQLLTHQKSHLGERPHRCAECGKSFPGRSQLLTHQRTHTGEKPYKCSECGRGFSQRSSVVSHQRTHTGEKPYKCGDCGKAFTEKSSLLHHKRTHTGEKPFECSDCGKAFAWKPQLLRHQRIHTGEKPFECSECGKAFVQKVQLIKHQRHHTGEKTYKCNGCEKAFFEKTQLMIHQKIHTGERPYTCGKCGKSFTRKSHLMRHEPIHTRVKSYRCSQCGGIFNKKSHLIRHQKDHTVEAI", "length": 756 }, "evidence": [ { "id": "F1RI74", "url": "https://omabrowser.org/oma/group/F1RI74/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86T29-1", "protein_name": "Zinc finger protein 605", "gene_name": "ZNF605", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIQSQISFEDVAVDFTLEEWQLLNPTQKNLYRDVMLENYSNLVFLEVWLDNPKMWLRDNQDNLKSMERGHKYDVFGKIFNSSINIVHVGLRSHKCGTGEKSLKCPFDLLIPKNNCERKKIDELNKKLLFCIKPGRTHGGIKYCDCSTCRKSSNEEPWLTANHITHTGVYLCMECGRFFNKKSQLVIHQRTHTGEKPYQCSECGKAFSQKSLLTVHQRTHSGEKPHGCSECQKAFSRKSLLILHQRIHTGEKPYGCSECGKAFSRKSQLKRHQITHTIEKPYSCSECGKAFSQKLKLITHQRAHTGEKPYPCSHCGKAFFWKSQLITHQRTHTGKKPYGCGECQKAFSRNSLLIRHQRIHTGEKPYECNECGEAFIRKPQLIKHQITHTGEKNYRCSDCEEAFFKKSELIRHQKIHLGEKPYGCIQCGKTFFGKSQLLTHHRTHTGEKPYECSECGKAFTQKSSLISHQRTHTGEKPYECSECRKTFSEKSSLIHHQRTHTGEKPFECSECRKAFAWKPQLLRHQRIHTGEKPYECSECGKAFVQKVQLIKHQRNHTGEKTYGCSDCAKAFFEKAQLIIHQRIHTGERPYKCGECGKSFTRKSHLMRHQRIHTGDKYYGCNECGTTFNRKSQLMIHQRNHII", "length": 641 }, "evidence": [ { "id": "F1RI74", "url": "https://omabrowser.org/oma/group/F1RI74/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "positive regulation of reciprocal meiotic recombination", "id": "GO:0010845", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010845", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "histone H3K4 methyltransferase activity", "id": "GO:0042800", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042800", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "histone H3K36 methyltransferase activity", "id": "GO:0046975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046975", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" }, { "name": "recombination hotspot binding", "id": "GO:0010844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010844", "evidence": [ { "database": "UniProtKB", "id": "F1RI74", "url": "https://www.uniprot.org/uniprotkb/F1RI74" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI74" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 199, "end_pos": 226, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI74" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 76, "start_aa": "Ile", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 584, "end_pos": 586 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RFS3-1", "uniprot_ac": "F1RFS3", "uniprot_id": "F1RFS3_PIG", "mass": { "chemical_mass": 45462.0, "monoisotopic_mass": 45462.0 }, "refseq": { "ac": "XP_005669243", "name": "monocarboxylate transporter 11 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669243" }, "gene_names": [ { "name": "SLC16A11", "type": "recommended", "evidence": [ { "id": "F1RFS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFS3" } ] }, { "name": "SLC16A11", "type": "synonym", "evidence": [ { "id": "XP_005669243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669243" } ] } ], "protein_names": [ { "name": "Monocarboxylate transporter 11", "type": "recommended", "evidence": [ { "id": "F1RFS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFS3/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 16 member 11", "type": "synonym", "evidence": [ { "id": "F1RFS3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFS3/entry#names_and_taxonomy" } ] }, { "name": "monocarboxylate transporter 11 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005669243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669243" } ] } ], "function": [ { "annotation": "Proton-linked monocarboxylate transporter. It catalyzes the transport of pyruvate across the plasma membrane. Probably involved in hepatic lipid metabolism: overexpression results in an increase of triacylglycerol(TAG) levels, small increases in intracellular diacylglycerols and decreases in lysophosphatidylcholine, cholesterol ester and sphingomyelin lipids.", "evidence": [ { "database": "UniProtKB", "id": "I3L8Z6", "url": "https://www.uniprot.org/uniprotkb/I3L8Z6#function" }, { "database": "UniProtKB", "id": "ARBA00053773", "url": "https://www.uniprot.org/uniprotkb/ARBA00053773#function" }, { "database": "UniProtKB", "id": "F1RFS3", "url": "https://www.uniprot.org/uniprotkb/F1RFS3#function" }, { "database": "UniProtKB", "id": "A0A8W4FI78", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI78#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RFS3", "url": "https://www.uniprot.org/uniprotkb/F1RFS3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC16A11", "url": "https://www.uniprot.org/uniprotkb/F1RFS3", "locus": { "chromosome": "12", "start_pos": 52439418, "end_pos": 52442435, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017925", "url": "https://www.ensembl.org/id/ENSSSCG00000017925" } ] } } ], "crossref": [ { "id": "F1RFS3", "url": "https://alphafold.ebi.ac.uk/entry/F1RFS3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017925", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017925", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17423", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17423", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516827", "url": "https://www.ncbi.nlm.nih.gov/gene/100516827", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516827", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516827", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RFS3", "url": "https://www.orthodb.org/?gene=F1RFS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360:SF80", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360:SF80", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669243", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669243", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "64720", "url": "https://www.rhea-db.org/rhea/64720", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FI78", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI78-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFS3", "url": "https://www.uniprot.org/uniprotkb/F1RFS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFS3-1", "url": "https://www.uniprot.org/uniprotkb/F1RFS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8Z6", "url": "https://www.uniprot.org/uniprotkb/I3L8Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8Z6-1", "url": "https://www.uniprot.org/uniprotkb/I3L8Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPKPAGPPDGGWGWVVAAAAFVVNGLSYGLLRSLGLALPDLAEHFDRSAQDTAWVSALALAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFARSLLHLYLGLGVLAGAGWALVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQLLLDHFGWRGALLLLGAVTLHLTPCGALLRPLELPGDPPTPPRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALDRGLGGYGAALVVAVAAVGDAGARLLSGWLADQGWVPLPRLLAMFGALTGLGLLAVGLVPVVGSEEGWGGPLLAVAGAYGLSAGSYAPLVFGVLPGLVGIGGVVQATGLVMMLMSLGGLLGPPLSGFLRDETGDFTASFLVCGSFILSGSFVYMGLPRALPSCRPASRPATPPPERGELLPAPQVALLSPGGPRSTLDTTC", "length": 447, "header": "tr|F1RFS3-1|F1RFS3_PIG Isoform 1 of Monocarboxylate transporter 11 OS=Sus scrofa OX=9823 GN=SLC16A11 PE=3 SV=4 CANONICAL=F1RFS3-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FI78-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI78/entry", "sequence": { "sequence": "MTPKPAGPPDGGWGWVVAAAAFVVNGLSYGLLRSLGLALPDLAEHFDRSAQDTAWVSALALAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFARSLLHLYLGLGVLAGAGWALVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQLLLDHFGWRGALLLLGAVTLHLTPCGALLRPLELPGDPPTPPRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALDRGLGGYGAALVVAVAAVGDAGARLLSGWLADQGWVPLPRLLAMFGALTGLGLLAVGLVPVVGSEEGWGGPLLAVAGAYGLSAGSYAPLVFGVLPGLVGIGGVVQATGLVMMLMSLGGLLGPPLSGKGLSQQIHSHPSSAPAVRGL", "length": 392, "header": "tr|A0A8W4FI78-1|F1RFS3_PIG Computationally mapped isoform of Monocarboxylate transporter 11 OS=Sus scrofa OX=9823 GN=SLC16A11 PE=3 SV=1 CANONICAL=F1RFS3-1" }, "locus": { "chromosome": "12", "start_pos": 52442023, "end_pos": 52440422, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104844.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104844.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078928.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078928.1" } ] } }, { "isoform_ac": "F1RFS3-1", "url": "https://www.uniprot.org/uniprotkb/F1RFS3/entry", "sequence": { "sequence": "MTPKPAGPPDGGWGWVVAAAAFVVNGLSYGLLRSLGLALPDLAEHFDRSAQDTAWVSALALAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFARSLLHLYLGLGVLAGAGWALVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQLLLDHFGWRGALLLLGAVTLHLTPCGALLRPLELPGDPPTPPRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALDRGLGGYGAALVVAVAAVGDAGARLLSGWLADQGWVPLPRLLAMFGALTGLGLLAVGLVPVVGSEEGWGGPLLAVAGAYGLSAGSYAPLVFGVLPGLVGIGGVVQATGLVMMLMSLGGLLGPPLSGFLRDETGDFTASFLVCGSFILSGSFVYMGLPRALPSCRPASRPATPPPERGELLPAPQVALLSPGGPRSTLDTTC", "length": 447, "header": "tr|F1RFS3-1|F1RFS3_PIG Isoform 1 of Monocarboxylate transporter 11 OS=Sus scrofa OX=9823 GN=SLC16A11 PE=3 SV=4 CANONICAL=F1RFS3-1" }, "locus": { "chromosome": "12", "start_pos": 52442023, "end_pos": 52440169, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019508.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019508.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018990.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018990.4" } ] } }, { "isoform_ac": "I3L8Z6-1", "url": "https://www.uniprot.org/uniprotkb/I3L8Z6/entry", "sequence": { "sequence": "MTPKPAGPPDGGWGWVVAAAAFVVNGLSYGLLRSLGLALPDLAEHFDRSAQDTAWVSALALAVQQAASPVGSALSTRWGARPVVMVGGVLTSLGFVFSAFARSLLHLYLGLGVLAGAGWALVFAPALGTLSRYFSRRRVLAVGLALTGNGASSLLLAPALQLLLDHFGWRGALLLLGAVTLHLTPCGALLRPLELPGDPPTPPRSPLAALGLDLFTRRVFLVFALGTALVAGGYFIPYVHLAPHALDRGLGGYGAALVVAVAAVGDAGARLLSGWLADQGWVPLPRLLAMFGALTGLGLLAVGLGWGGPLLAVAGAYGLSAGSYAPLVFGVLPGLVGIGGVVQATGLVMMLMSLGGLLGPPLSGFLRDETGDFTASFLVCGSFILSGSFVYMGLPRALPSCRPASRPATPPPERGELLPAPQVALLSPGGPRSTLDTTC", "length": 439, "header": "tr|I3L8Z6-1|F1RFS3_PIG Computationally mapped isoform of Monocarboxylate transporter 11 OS=Sus scrofa OX=9823 GN=SLC16A11 PE=3 SV=3 CANONICAL=F1RFS3-1" }, "locus": { "chromosome": "12", "start_pos": 52442023, "end_pos": 52440169, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027087.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027087.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020507.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020507.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 201, "start_aa": "Thr", "end_pos": 201, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr201", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics 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] }, { "id": "PTHR15124", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15124", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15124:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15124:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10262", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10262", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FKP5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHD7", "url": "https://www.uniprot.org/uniprotkb/F1RHD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RHD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNPARAPAPSPVRPSASLRPLASVRASTPARGSTLARTSLLVRTPNLVPASGPGPIRTPTPVRTPTPVRTPTPVRTLTPVRTPTPVRTPTPVRTPTPVRTPTPVRTPTPVQVPTPVRVPTTVGIPTPTLSQVLVPALESLPNPALPSLDPPLEPDPELTLSPDEDPTPTPRAKHLPLVANGFVPVQEPLPALSPLATNLLESTPGAGTDSSTTKLTDSTSGHVPGTPILATIPLAVALPVSTNALASTSENIQVDNKILIRVVYCGLCSYGLRYILLKKSLEQQFPNCLVFEEDISAQATGAFEVFVDGKLVHSKKKGDGFVDETKLQKIVSHINEEIKKR", "length": 342, "header": "tr|F1RHD7-1|F1RHD7_PIG Isoform 1 of Selenoprotein V OS=Sus scrofa OX=9823 GN=SELENOV PE=4 SV=5 CANONICAL=F1RHD7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FKP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKP5/entry", "sequence": { "sequence": "MNNPARAPAPSPVRPSASLRPLASVRASTPARGSTLARTSLLVRTPNLVPASGPGPIRTPTPVRTPTPVRTPTPVRTLTPVRTPTPVRTPTPVRTPTPVRTPTPVRTPTPVQVPTPVRVPTTVGIPTPTLSQVLVPALESLPNPALPSLDPPLEPDPELTLSPDEDPTPTPRAKHLPLVANGFVPVQEPLPALSPLATNLLESTPGAGTDSSTTKLTDSTSGHVPGTPILATIPLAVALPVSTNALASTSENIQVDNKILIRVYILLKKSLEQQFPNCLVFEEDISAQATGAFEVFVDGKLVHSKKKGDGFVDETKLQKIVSHINEEIKKR", "length": 331, "header": "tr|A0A8W4FKP5-1|F1RHD7_PIG Computationally mapped isoform of Selenoprotein V OS=Sus scrofa OX=9823 GN=SELENOV PE=4 SV=1 CANONICAL=F1RHD7-1" }, "locus": { "chromosome": "6", "start_pos": 48165340, "end_pos": 48162468, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101433.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101433.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079904.1" } ] } }, { "isoform_ac": "F1RHD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RHD7/entry", "sequence": { "sequence": "MNNPARAPAPSPVRPSASLRPLASVRASTPARGSTLARTSLLVRTPNLVPASGPGPIRTPTPVRTPTPVRTPTPVRTLTPVRTPTPVRTPTPVRTPTPVRTPTPVRTPTPVQVPTPVRVPTTVGIPTPTLSQVLVPALESLPNPALPSLDPPLEPDPELTLSPDEDPTPTPRAKHLPLVANGFVPVQEPLPALSPLATNLLESTPGAGTDSSTTKLTDSTSGHVPGTPILATIPLAVALPVSTNALASTSENIQVDNKILIRVVYCGLCSYGLRYILLKKSLEQQFPNCLVFEEDISAQATGAFEVFVDGKLVHSKKKGDGFVDETKLQKIVSHINEEIKKR", "length": 342, "header": "tr|F1RHD7-1|F1RHD7_PIG Isoform 1 of Selenoprotein V OS=Sus scrofa OX=9823 GN=SELENOV PE=4 SV=5 CANONICAL=F1RHD7-1" }, "locus": { "chromosome": "6", "start_pos": 48165340, "end_pos": 48162468, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003317.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003317.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003235.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003235.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 168, "start_aa": "Thr", "end_pos": 168, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr168", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 170, "start_aa": "Thr", "end_pos": 170, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr170", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FKP5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RHD7", "url": "https://www.uniprot.org/uniprotkb/F1RHD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RHD7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 342, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RHD7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RHD7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"MTVPALASASGLLQVASLLGLLLLLLKAAQLYLHRQWLLKALQQFPSPPSHWLYGHSREFQEESELPPLLKRVEKYPSACALWRWGTRAMVLVYDPDYMKVVLARSDPKTSVVYRLLIPWIGCGLLLLNGQTWFQRRRMLTPAFHYDILKPYVGLMAKSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSTQTDGDSHSYIQAIWDLKNLFSTRTKSAFLQNDIIYRLSPEGRKSHRAARIAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPSRKPTVIPEVVLHSKMDPPENHLTMSPVPSALSRIG", "length": 514, "header": "tr|A0A900QA25-1|A0A900QA25_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255311 PE=3 SV=1 CANONICAL=A0A900QA25-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FL49-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL49/entry", "sequence": { "sequence": "MTVPALASASGLLQVASLLGLLLLLLKAAQLYLHRQWLLKALQQFPSPPSHWLYGHSREFQEESELPPLLKRVEKYPSACALWRWGTRAMVLVYDPDYMKVVLARSGCGLLLLNGQTWFQRRRMLTPAFHYDILKPYVGLMAKSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSTQTDGDSHSYIQAIWDLKNLFSTRTKSAFLQNDIIYRLSPEGRKSHRAARIAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPSRKPTVIPEVVLHSKMDPPENHLTMSPVPSALSRIG", "length": 499, "header": "tr|A0A8W4FL49-1|A0A900QA25_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255311 PE=3 SV=1 CANONICAL=A0A900QA25-1" }, "locus": { "chromosome": "6", "start_pos": 164545300, "end_pos": 164523351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095807.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095807.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079932.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079932.1" } ] } }, { "isoform_ac": "A0A900QA25-1", "url": "https://www.uniprot.org/uniprotkb/A0A900QA25/entry", "sequence": { "sequence": "MTVPALASASGLLQVASLLGLLLLLLKAAQLYLHRQWLLKALQQFPSPPSHWLYGHSREFQEESELPPLLKRVEKYPSACALWRWGTRAMVLVYDPDYMKVVLARSDPKTSVVYRLLIPWIGCGLLLLNGQTWFQRRRMLTPAFHYDILKPYVGLMAKSVQVMLDKWEQLVAQDPRLEIVGPVSLMTLDTIMKCAFSHQGSTQTDGDSHSYIQAIWDLKNLFSTRTKSAFLQNDIIYRLSPEGRKSHRAARIAHQHTDRVIQLRKAQLQKQGEMENVRKKRHLDFLDILLLAQMEKGNSLSDTDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRFAPGSARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPSRKPTVIPEVVLHSKMDPPENHLTMSPVPSALSRIG", "length": 514, "header": "tr|A0A900QA25-1|A0A900QA25_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC110255311 PE=3 SV=1 CANONICAL=A0A900QA25-1" }, "locus": { "chromosome": "6", "start_pos": 164545300, "end_pos": 164523351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063601.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063601.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044191.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044191.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FL49", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-211935", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211935", "resource": "Reactome", "description": "Fatty acids" }, { "id": "R-SSC-211958", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211958", "resource": "Reactome", "description": "Miscellaneous substrates" }, { "id": "R-SSC-211979", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211979", "resource": "Reactome", "description": "Eicosanoids" }, { "id": "R-SSC-2142691", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142691", "resource": "Reactome", "description": "Synthesis of Leukotrienes (LT) and Eoxins (EX)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "A0A900QA25", "url": "https://www.uniprot.org/uniprotkb/A0A900QA25" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "A0A900QA25", "url": "https://www.uniprot.org/uniprotkb/A0A900QA25" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen", "id": "GO:0016712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016712", "evidence": [ { "database": "UniProtKB", "id": "A0A900QA25", "url": "https://www.uniprot.org/uniprotkb/A0A900QA25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "A0A900QA25", "url": "https://www.uniprot.org/uniprotkb/A0A900QA25" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A900QA25", "url": "https://www.uniprot.org/uniprotkb/A0A900QA25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RG79-1", "uniprot_ac": "F1RG79", "uniprot_id": "F1RG79_PIG", "mass": { "chemical_mass": 96222.0, "monoisotopic_mass": 96222.0 }, "refseq": { "ac": "XP_005653058", "name": "zinc finger protein 629", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653058" }, "gene_names": [ { "name": "ZNF629", "type": "recommended", "evidence": [ { "id": "F1RG79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG79" } ] }, { "name": "ZNF629", "type": "synonym", "evidence": [ { "id": "XP_005653058", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653058" } ] } ], "protein_names": [ { "name": "Zinc finger protein 629", "type": "recommended", "evidence": [ { "id": "F1RG79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG79/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 629", "type": "synonym", "evidence": [ { "id": "XP_005653058", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653058" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM28", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM28#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF629", "url": "https://www.uniprot.org/uniprotkb/F1RG79", "locus": { "chromosome": "3", "start_pos": 17618999, "end_pos": 17610293, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007780", "url": "https://www.ensembl.org/id/ENSSSCG00000007780" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007780", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007780", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513588", "url": "https://www.ncbi.nlm.nih.gov/gene/100513588", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513588", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513588", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGDSFTE", "url": "https://omabrowser.org/oma/group/CGDSFTE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RG79", "url": "https://www.orthodb.org/?gene=F1RG79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653058", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FM28", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM28-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG79-1", "url": "https://www.uniprot.org/uniprotkb/F1RG79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPETVLWGPDLQGPEQSPSDAQRGAESGNEEESPQQESSGEEIILGDPAQSPEFKDPPEMPLETPSQDPSAPRDSPSPLSHSSPLDRQTPVDPPAPEVVPAPSDWTKACEASWQWGTLTPWNSPPVVPASEPSLRELVQGRPSGAEKPYICNECGKSFSQWSKLLRHQRIHTGERPNTCSECGKSFTQSSHLVQHQRTHTGEKPYKCPDCGKCFSWSSNLVQHQRTHTGEKPYKCTECEKAFTQSTNLIKHQRSHTGEKPYKCGECRRAFYRSSDLIQHQATHTGEKPYKCPECGKRFGQNHNLLKHQKIHAGEKPYRCTECGKSFIQSSELTQHQRTHTGEKPYECLECGKSFGHSSTLIKHQRTHLREDPFKCPVCGKTFTLSATLLRHQRTHTGERPYKCPECGKSFSVSSNLINHQRIHRGERPYICADCGKSFIMSSTLIRHQRIHTGEKPYKCSDCGKSFIRSSHLIQHRRTHTGEKPYKCPECGKSFSQSSNLITHVRTHMDENLFVCSDCGKAFLEAHELEQHRVIHERGKTPARRAQGDSLLGLGDPALLTPPPGAKPHKCLVCGKGFNDEGIFMQHQRIHIGENPYKNSDGLPAHPAPKPPQFRSPRLPFGGNSYPGAAEGRAEPPGQAFKMPEGQESFSQRLGLLSSKSYICSHCGESFLDRAVLLQHQLTHGSEKPFLFPDYRIGVGEGAGPSPFLSGKPFKCPECKKSFALSSELLLHQKVHAGGKPQKNPELGKSSSVLLEHLRSPLGARPYSCSDCGASFQDRLALIRHQETHTQEKSPGPEDPLPAPAPLSTSQEGEGEAPAPAPTGSSSSQEDGEGPKTLLGEKPYLCPECGDGFTEVAALLLHRSCHPGVTL", "length": 871, "header": "tr|F1RG79-1|F1RG79_PIG Isoform 1 of Zinc finger protein 629 OS=Sus scrofa OX=9823 GN=ZNF629 PE=3 SV=1 CANONICAL=F1RG79-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FM28-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM28/entry", "sequence": { "sequence": "MLSEVRRAESGNEEESPQQESSGEEIILGDPAQSPEFKDPPEMPLETPSQDPSAPRDSPSPLSHSSPLDRQTPVDPPAPEVVPAPSDWTKACEASWQWGTLTPWNSPPVVPASEPSLRELVQGRPSGAEKPYICNECGKSFSQWSKLLRHQRIHTGERPNTCSECGKSFTQSSHLVQHQRTHTGEKPYKCPDCGKCFSWSSNLVQHQRTHTGEKPYKCTECEKAFTQSTNLIKHQRSHTGEKPYKCGECRRAFYRSSDLIQHQATHTGEKPYKCPECGKRFGQNHNLLKHQKIHAGEKPYRCTECGKSFIQSSELTQHQRTHTGEKPYECLECGKSFGHSSTLIKHQRTHLREDPFKCPVCGKTFTLSATLLRHQRTHTGERPYKCPECGKSFSVSSNLINHQRIHRGERPYICADCGKSFIMSSTLIRHQRIHTGEKPYKCSDCGKSFIRSSHLIQHRRTHTGEKPYKCPECGKSFSQSSNLITHVRTHMDENLFVCSDCGKAFLEAHELEQHRVIHERGKTPARRAQGDSLLGLGDPALLTPPPGAKPHKCLVCGKGFNDEGIFMQHQRIHIGENPYKNSDGLPAHPAPKPPQFRSPRLPFGGNSYPGAAEGRAEPPGQAFKMPEGQESFSQRLGLLSSKSYICSHCGESFLDRAVLLQHQLTHGSEKPFLFPDYRIGVGEGAGPSPFLSGKPFKCPECKKSFALSSELLLHQKVHAGGKPQKNPELGKSSSVLLEHLRSPLGARPYSCSDCGASFQDRLALIRHQETHTQEKSPGPEDPLPAPAPLSTSQEGEGEAPAPAPTGSSSSQEDGEGPKTLLGEKPYLCPECGDGFTEVAALLLHRSCHPGVTL", "length": 853, "header": "tr|A0A8W4FM28-1|F1RG79_PIG Computationally mapped isoform of Zinc finger protein 629 OS=Sus scrofa OX=9823 GN=ZNF629 PE=3 SV=1 CANONICAL=F1RG79-1" }, "locus": { "chromosome": "3", "start_pos": 17615732, "end_pos": 17613023, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102606.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102606.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079353.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079353.1" } ] } }, { "isoform_ac": "F1RG79-1", "url": "https://www.uniprot.org/uniprotkb/F1RG79/entry", "sequence": { "sequence": "MEPETVLWGPDLQGPEQSPSDAQRGAESGNEEESPQQESSGEEIILGDPAQSPEFKDPPEMPLETPSQDPSAPRDSPSPLSHSSPLDRQTPVDPPAPEVVPAPSDWTKACEASWQWGTLTPWNSPPVVPASEPSLRELVQGRPSGAEKPYICNECGKSFSQWSKLLRHQRIHTGERPNTCSECGKSFTQSSHLVQHQRTHTGEKPYKCPDCGKCFSWSSNLVQHQRTHTGEKPYKCTECEKAFTQSTNLIKHQRSHTGEKPYKCGECRRAFYRSSDLIQHQATHTGEKPYKCPECGKRFGQNHNLLKHQKIHAGEKPYRCTECGKSFIQSSELTQHQRTHTGEKPYECLECGKSFGHSSTLIKHQRTHLREDPFKCPVCGKTFTLSATLLRHQRTHTGERPYKCPECGKSFSVSSNLINHQRIHRGERPYICADCGKSFIMSSTLIRHQRIHTGEKPYKCSDCGKSFIRSSHLIQHRRTHTGEKPYKCPECGKSFSQSSNLITHVRTHMDENLFVCSDCGKAFLEAHELEQHRVIHERGKTPARRAQGDSLLGLGDPALLTPPPGAKPHKCLVCGKGFNDEGIFMQHQRIHIGENPYKNSDGLPAHPAPKPPQFRSPRLPFGGNSYPGAAEGRAEPPGQAFKMPEGQESFSQRLGLLSSKSYICSHCGESFLDRAVLLQHQLTHGSEKPFLFPDYRIGVGEGAGPSPFLSGKPFKCPECKKSFALSSELLLHQKVHAGGKPQKNPELGKSSSVLLEHLRSPLGARPYSCSDCGASFQDRLALIRHQETHTQEKSPGPEDPLPAPAPLSTSQEGEGEAPAPAPTGSSSSQEDGEGPKTLLGEKPYLCPECGDGFTEVAALLLHRSCHPGVTL", "length": 871, "header": "tr|F1RG79-1|F1RG79_PIG Isoform 1 of Zinc finger protein 629 OS=Sus scrofa OX=9823 GN=ZNF629 PE=3 SV=1 CANONICAL=F1RG79-1" }, "locus": { "chromosome": "3", "start_pos": 17615732, "end_pos": 17612962, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008527.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008527.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008308.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008308.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM28", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513588", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513588", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I9T6-1", "protein_name": "Zinc finger protein 629", "gene_name": "Znf629", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEPETVLWGPDLKGPEESRNNAHRGAESGNEEESPQQESSGEEIILGDPAQSPESKDPPEMSLESPSQDASVPQDSPVPLGSSNPLDHQTTMDPSAPEVVPSPSEWTKACETNWQWGTLTTWNSTPVVTASEPSLRELVQGRPSGAEKPYICNECGKSFSQWSKLLRHQRIHTGERPNTCSECGKSFTQSSHLVQHQRTHTGEKPYKCPDCGKCFSWSSNLVQHQRTHTGEKPYKCTECEKAFTQSTNLIKHQRSHTGEKPYKCGECRRAFYRSSDLIQHQATHTGEKPYKCPECGKRFGQNHNLLKHQKIHAGEKPYRCTECGKSFIQSSELTQHQRTHTGEKPYECLECGKSFGHSSTLIKHQRTHLREDPFKCPVCGKTFTLSATLLRHQRTHTGERPYKCPECGKSFSVSSNLINHQRIHRGERPYICADCGKSFIMSSTLIRHQRIHTGEKPYKCSDCGKSFIRSSHLIQHRRTHTGEKPYKCPECGKSFSQSSNLITHVRTHMDENLFVCSDCGKAFLEAQELEQHRLIHERGKTPARRAQSDSLLGLGDPSLLTPPPGAKPHKCLVCGKGFNDEGIFMQHQRIHIGENPYKNADGLTAHSAPKPPQFRSPRVPFAGNSHPGASEGKADPPGQSLKVPEGQEGFSQRLGQLSSKCYVCSHCGESFLDRAVLLQHQLTHGNEKPFLFPECRIGLGEGAEPSSFLSGKPFKCPECKKSFGLSSELLQHQKVHAGGKSQKSSELGKSSSVLLEHLRSPLGARPYSCSDCGASFLDRLALTCHQETHTQERAPTPEDPPSESATLSTNQEDEGEASTPPPGSSHREEESPKTLSQEKPYVCPECGDGFTEVATLLLHRSCHPGVSL", "length": 868 }, "evidence": [ { "id": "F1RG79", "url": "https://omabrowser.org/oma/group/F1RG79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6A085-1", "protein_name": "Zinc finger protein 629", "gene_name": "Znf629", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"ZNF629", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPETALWGPDLQGPEQSPNDAHRGAESENEEESPRQESSGEEIIMGDPAQSPESKDSTEMSLERSSQDPSVPQNPPTPLGHSNPLDHQIPLDPPAPEVVPTPSDWTKACEASWQWGALTTWNSPPVVPANEPSLRELVQGRPAGAEKPYICNECGKSFSQWSKLLRHQRIHTGERPNTCSECGKSFTQSSHLVQHQRTHTGEKPYKCPDCGKCFSWSSNLVQHQRTHTGEKPYKCTECEKAFTQSTNLIKHQRSHTGEKPYKCGECRRAFYRSSDLIQHQATHTGEKPYKCPECGKRFGQNHNLLKHQKIHAGEKPYRCTECGKSFIQSSELTQHQRTHTGEKPYECLECGKSFGHSSTLIKHQRTHLREDPFKCPVCGKTFTLSATLLRHQRTHTGERPYKCPECGKSFSVSSNLINHQRIHRGERPYICADCGKSFIMSSTLIRHQRIHTGEKPYKCSDCGKSFIRSSHLIQHRRTHTGEKPYKCPECGKSFSQSSNLITHVRTHMDENLFVCSDCGKAFLEAHELEQHRVIHERGKTPARRAQGDSLLGLGDPSLLTPPPGAKPHKCLVCGKGFNDEGIFMQHQRIHIGENPYKNADGLIAHAAPKPPQLRSPRLPFRGNSYPGAAEGRAEAPGQPLKPPEGQEGFSQRRGLLSSKTYICSHCGESFLDRSVLLQHQLTHGNEKPFLFPDYRIGLGEGAGPSPFLSGKPFKCPECKQSFGLSSELLLHQKVHAGGKSSQKSPELGKSSSVLLEHLRSPLGARPYRCSDCRASFLDRVALTRHQETHTQEKPPNPEDPPPEAVTLSTDQEGEGETPTPTESSSHGEGQNPKTLVEEKPYLCPECGAGFTEVAALLLHRSCHPGVSL", "length": 869 }, "evidence": [ { "id": 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"go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RG79", "url": "https://www.uniprot.org/uniprotkb/F1RG79" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RG79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG79" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 150, "end_pos": 177, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FPX5-1", "uniprot_ac": "A0A8W4FPX5", "uniprot_id": "A0A8W4FPX5_PIG", "mass": { "chemical_mass": 27736.0, "monoisotopic_mass": 27736.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RNA-directed DNA polymerase", "type": "recommended", "evidence": [ { "id": "A0A8W4FPX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.49", "type": "synonym", "evidence": [ { "id": "A0A8W4FPX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5", "locus": {} } ], "crossref": [ { "id": "A0A8W4FPX5", "url": "https://alphafold.ebi.ac.uk/entry/A0A8W4FPX5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FPX5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVLICISLIIRDVEHFFMSLLVICTSSLEKCLFRSFAHFSIGWLAFLLLSYISCLYILEIKPLSAASFEAIFSHSVSCLFVFFLVSFAMQKLVSFQKVEEEGTLPKIFYDATITLIPKPDKDTTKKENYWPISLMTIDAKILHKILANRIQRHIKKIVPHNQVRFIPGSQGCFNILKSVKSIHHINKRKVKSHRIISIDAEKAFDKVQHPFMIKTLTKVGIEGTFLNIIKAIYDKTTANTQ", "length": 242, "header": "tr|A0A8W4FPX5-1|A0A8W4FPX5_PIG Isoform 1 of RNA-directed DNA polymerase OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A8W4FPX5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FPX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPX5/entry", "sequence": { "sequence": 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improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5A8W3", "url": "https://www.uniprot.org/uniprotkb/A5A8W3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154784", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154784", "resource": "KEGG Pathway" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MIB9-1", "protein_name": "FK506-binding protein-like", "gene_name": "FKBPL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVWLLPSGEALRPPPGADLDSVHPFLSKTVYPRWKGPGTQMDTSPINSMGEKDSCQPQQQGEKNLELPTQIRQHRGESPTEILELKVSPDPASQILQNPQEIEKLPAELERDSAKSHGSASAMSEPLQASDLWYCPDGSFVKKIVVRGHGLDKPKLGSRCTVQASGFPLGSGLPEGWTELTVGLGPWREETWGELIEKCLESMCQGEEAELQLPGRSGLPVRLTLASFTQGRDSWELEDTEKEALAREERARGTELFRAGNPEGAARCYARALRLLLTLPPPGPPERTVLHANLAACQLLLGQPHLAAQSCDRVLEREPGHIKALYRRGVAQAALGNLEKAMTDLKKVLAVDPKNRAAQEELGKVIIQGKKQDAGLAQGLRKMFG", "length": 385 }, "evidence": [ { "id": "A5A8W3", "url": "https://omabrowser.org/oma/group/A5A8W3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O35450-1", "protein_name": "FK506-binding protein-like", "gene_name": "Fkbpl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METSPISPMNEKNTAQPQQREENAQQILNTAIPFRQRSPGLLPEALKVGVRPDPANQIVETQEIEHPVAGFEGDSDQFQVSTNEMAEHLQASDLWYCPDGSFVKKIIVPGHGLDKPKLGSKCQVLALGFPFGSGMPEGWTELTIGIGQWREKMWGELMEKCLESMRQGEEAKIHLPGSSAPLAKLRLDSFTNGRDSWEMEAMEKEALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLTLPPPGPPERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDAGLARGLRKMFS", "length": 347 }, "evidence": [ { "id": "A5A8W3", "url": "https://omabrowser.org/oma/group/A5A8W3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6MG81-1", "protein_name": "FK506-binding protein-like", "gene_name": "Fkbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METSLISPMKENNTAQPQQREENTQQNLNAAVPIKQQSPGLLPEALEVGVKPDPASQILATQEIENPVAGFEGDSDKFHISTDEMAEHLQASDLWYCPDGSFVKKIIVHGHGLDKPKLGSKCRVLALGFPFGSGMPEGWTELTIGTGQWREKTWGELTEKCLESMRQGEEAKIHLPGSSTPLAKLRLDSFTNGRDSWELEAVEKEALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLTLPPPGPPERTILHANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVAQAALGDLDKATADLKKVLAVDPKNRAAKEELGKVVIQGKIQDAGLARGLRKMFS", "length": 347 }, "evidence": [ { "id": "A5A8W3", "url": "https://omabrowser.org/oma/group/A5A8W3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UIM3-1", "protein_name": "FK506-binding protein-like", "gene_name": "FKBPL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METPPVNTIGEKDTSQPQQEWEKNLRENLDSVIQIRQQPRDPPTETLELEVSPDPASQILEHTQGAEKLVAELEGDSHKSHGSTSQMPEALQASDLWYCPDGSFVKKIVIRGHGLDKPKLGSCCRVLALGFPFGSGPPEGWTELTMGVGPWREETWGELIEKCLESMCQGEEAELQLPGHSGPPVRLTLASFTQGRDSWELETSEKEALAREERARGTELFRAGNPEGAARCYGRALRLLLTLPPPGPPERTVLHANLAACQLLLGQPQLAAQSCDRVLEREPGHLKALYRRGVAQAALGNLEKATADLKKVLAIDPKNRAAQEELGKVVIQGKNQDAGLAQGLRKMFG", "length": 349 }, "evidence": [ { "id": "A5A8W3", "url": "https://omabrowser.org/oma/group/A5A8W3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A5D9L4-1", "uniprot_ac": "A5D9L4", "uniprot_id": "A5D9L4_PIG", "mass": { "chemical_mass": 38511.0, "monoisotopic_mass": 38511.0 }, "refseq": { "ac": "NP_001138855", "name": "G patch domain and ankyrin repeat-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138855" }, "gene_names": [ { "name": "GPANK1", "type": "recommended", "evidence": [ { "id": "A5D9L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5D9L4" } ] }, { "name": "BAT4", "type": "synonym", "evidence": [ { "id": "NP_001138855", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138855" } ] }, { "name": "GPANK1", "type": "synonym", "evidence": [ { "id": "NP_001138855", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138855" } ] } ], "protein_names": [ { "name": "G patch domain and ankyrin repeat-containing protein 1", "type": "synonym", "evidence": [ { "id": "NP_001138855", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138855" } ] }, { "name": "G-patch domain and ankyrin repeats 1", "type": "synonym", "evidence": [ { "id": "A5D9L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5D9L4/entry#names_and_taxonomy" } ] }, { "name": "HLA-B associated transcript 4", "type": "synonym", "evidence": [ { "id": "NP_001138855", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138855" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A5D9L4", "url": "https://www.uniprot.org/uniprotkb/A5D9L4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPANK1", "url": "https://www.uniprot.org/uniprotkb/A5D9L4", "locus": { "chromosome": "7", "start_pos": 23777118, "end_pos": 23780851, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001413", "url": "https://www.ensembl.org/id/ENSSSCG00000001413" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001413", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001413", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156389", "url": "https://www.ncbi.nlm.nih.gov/gene/100156389", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156389", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156389", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QGWDQEH", "url": "https://omabrowser.org/oma/group/QGWDQEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A5D9L4", "url": "https://www.orthodb.org/?gene=A5D9L4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20923", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20923", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20923:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20923:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001138855", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138855", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A5D9L4", "url": "https://www.uniprot.org/uniprotkb/A5D9L4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5D9L4-1", "url": "https://www.uniprot.org/uniprotkb/A5D9L4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRSQPEPARKRKKRRTMRETTAGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQGRANPIPTVLKRDQEGLGYRSAAQPRVTHFSAWDTRAVAGRERVPRLTTLNQKEKRRQEEKDRAWERDLRTYMNLEF", "length": 349, "header": "tr|A5D9L4-1|A5D9L4_PIG Isoform 1 of G-patch domain and ankyrin repeats 1 OS=Sus scrofa OX=9823 GN=GPANK1 PE=4 SV=1 CANONICAL=A5D9L4-1" }, "isoforms": [ { "isoform_ac": "A5D9L4-1", "url": "https://www.uniprot.org/uniprotkb/A5D9L4/entry", "sequence": { "sequence": "MSGSSLINFTPATDPSDLWKDGQLQSHPEELEPTLDGAAARAFYEALIGDEDSTPEPQRSQPEPARKRKKRRTMRETTAGASGEDGQRRSLEAEDKMTQQILRAAQEGDLAKLKKLLDPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCELGGRDAAQLAEEAGFPEVARMVRESPGETRSPENRPRSLSPQYCETCDAHFQDSNHRTSTAHLLSLSRDLQPPNLPLGVPTSSPGFKLLLRGGWEPGKGLGPQGQGRANPIPTVLKRDQEGLGYRSAAQPRVTHFSAWDTRAVAGRERVPRLTTLNQKEKRRQEEKDRAWERDLRTYMNLEF", "length": 349, "header": "tr|A5D9L4-1|A5D9L4_PIG Isoform 1 of G-patch domain and ankyrin repeats 1 OS=Sus scrofa OX=9823 GN=GPANK1 PE=4 SV=1 CANONICAL=A5D9L4-1" }, "locus": { "chromosome": "7", "start_pos": 23779238, "end_pos": 23777299, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107838.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107838.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082224.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082224.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5D9L4", "url": "https://www.uniprot.org/uniprotkb/A5D9L4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156389", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156389", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FC30-1", "protein_name": "G patch domain and ankyrin repeat-containing protein 1 isoform a", "gene_name": "gpank1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNNPVYFTRAKQEETLWIEKKKEDKQTISGVEARDFYQSLLQERDRERPRDGEAAASRRAKRRTEPNRRRREARRLEASTVQPVCTERDGHKLLQCAQEGNIRALKDLLRRGCDVNFRDDFFWTGVMCASQAGQTEAVRLLLEHGAAWVGVVDKQGRDARDLALQAGHQDVVRELEQFNVPETTNTSITNNADSVTSQWCNVCAVHYTDSTETHNRSTLHQFSELHPPATPQYCLPSSSTSYKMMLRLGWDPSSGLGPGHSGRKNPVSTILKRDQAGLGYGTAPQPKVTHFQPKDPQAVRHIFKEKRLRQERGSTLSAKELKKKEDRDKRWEIDYRSSFNFDF", "length": 343 }, "evidence": [ { "id": "A5D9L4", "url": "https://omabrowser.org/oma/group/A5D9L4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HZG3-1", "protein_name": "G patch domain and ankyrin repeat-containing protein 1", "gene_name": "Gpank1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSRPSLIAFTPATDSSDLWKDGQQQPQPEKPGPVLDGAAARAFYEALIADESSSPKPQRAGPVRGQKRRKRRGTREAAAVAAGASGQGRPLPPEDDDRMTQWILLAAQNGDLTELRRLLEPREAGGAGGNINARDAFWWTPLMCAARAGQAAAVCYLLDRGAAWVGVCELGGRDAAQLAEEAGFPEVARMVRESRGETRSPENQSRSPPTASQFCEDCGAHFEDSNHRTSTAHLLSLSRSPHPSNLPLGVPTSSPGFRLLLRGGWEPGMGLGPRGEGRANPIPTILKQDQEGLGYRPAPQPRVTHFPARDTRAVSGRERVPRVATLSQRENRKREEKDRAWERNLRLYMNLEL", "length": 353 }, "evidence": [ { "id": "A5D9L4", "url": "https://omabrowser.org/oma/group/A5D9L4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95872-1", "protein_name": "G patch domain and ankyrin repeat-containing protein 1", "gene_name": "GPANK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001121921" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain 60", "type": "synonym", "evidence": [ { "id": "A5GFM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5GFM9/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 60", "type": "synonym", "evidence": [ { "id": "NP_001121921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001121921" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A5GFM9", "url": "https://www.uniprot.org/uniprotkb/A5GFM9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD60", "url": "https://www.uniprot.org/uniprotkb/A5GFM9", "locus": { "chromosome": "17", "start_pos": 58425081, "end_pos": 58434669, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007511", "url": "https://www.ensembl.org/id/ENSSSCG00000007511" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007511", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007511", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100144514", "url": "https://www.ncbi.nlm.nih.gov/gene/100144514", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100144514", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144514", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KWKQWTS", "url": "https://omabrowser.org/oma/group/KWKQWTS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A5GFM9", "url": "https://www.orthodb.org/?gene=A5GFM9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22677:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22677:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001121921", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001121921", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A5GFM9", "url": "https://www.uniprot.org/uniprotkb/A5GFM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5GFM9-1", "url": "https://www.uniprot.org/uniprotkb/A5GFM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCRVTNCHSDMTVRELKEELDLRLGIPFNLQRLQYLDQGILMDEATLKFYDVVPGGIISLRIWHYDGWTELVLAAVEGDSSKLSFLGVTEDSFYRTANSQHFQDTQWRKWVAQRAFVALYIASHRGNLEAVQYLLEHGANCLGRSPVGRTPLHVAAAMGRLDCINLLLNYGASINDKDAQGETPMTLARRMNRGQSERRMFLFYWLVKLGMKGPADPADPAVNKAFQRVKSRFDSTKKKKT", "length": 241, "header": "tr|A5GFM9-1|A5GFM9_PIG Isoform 1 of Ankyrin repeat domain 60 OS=Sus scrofa OX=9823 GN=ANKRD60 PE=4 SV=1 CANONICAL=A5GFM9-1" }, "isoforms": [ { "isoform_ac": "A5GFM9-1", "url": "https://www.uniprot.org/uniprotkb/A5GFM9/entry", "sequence": { "sequence": "MCRVTNCHSDMTVRELKEELDLRLGIPFNLQRLQYLDQGILMDEATLKFYDVVPGGIISLRIWHYDGWTELVLAAVEGDSSKLSFLGVTEDSFYRTANSQHFQDTQWRKWVAQRAFVALYIASHRGNLEAVQYLLEHGANCLGRSPVGRTPLHVAAAMGRLDCINLLLNYGASINDKDAQGETPMTLARRMNRGQSERRMFLFYWLVKLGMKGPADPADPAVNKAFQRVKSRFDSTKKKKT", "length": 241, "header": "tr|A5GFM9-1|A5GFM9_PIG Isoform 1 of Ankyrin repeat domain 60 OS=Sus scrofa OX=9823 GN=ANKRD60 PE=4 SV=1 CANONICAL=A5GFM9-1" }, "locus": { "chromosome": "17", "start_pos": 58434499, "end_pos": 58425168, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008226.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008226.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008007.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008007.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5GFM9", "url": "https://www.uniprot.org/uniprotkb/A5GFM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100144514", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144514", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GJA8-1", "protein_name": "Ankyrin repeat domain 60", "gene_name": "Ankrd60", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTRGMTRAMRRAVDMARAGARPPKKHGDDPKAGARPAQPSSRARARIKGHTGDPLASTASPDLTPDVYVLRVRLEETGELFRVANCRSDMTVRELKEELDLMVGIPFNLQRLHFLDQGILMDDATLKFYDVIPGAIISLCIWHYDGWTELVLAAVEGDPSKMSCLGISEDTFYRTANSQHFKGEQWRQWTAQRAFVALYVSAHRGHVDAVQYLLELGANCLAKSPLGRTPLHVAAAMGRTECIQPLLEHGASIHDRDLKSETPVTIARRLKRGNFERKMFILYWMIKSGTRDPDLVSRDASEKHSPGVMARKTSVLIS", "length": 318 }, "evidence": [ { "id": "A5GFM9", "url": "https://omabrowser.org/oma/group/A5GFM9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2AMD2-1", "protein_name": "Ankyrin repeat domain 60", "gene_name": "Ankrd60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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[ "Protein" ] } ], "sequence": { "sequence": "MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG", "length": 382, "header": "tr|A5GFR3-1|A5GFR3_PIG Isoform 1 of Kelch domain-containing protein 3 OS=Sus scrofa OX=9823 GN=KLHDC3 PE=4 SV=1 CANONICAL=A5GFR3-1" }, "isoforms": [ { "isoform_ac": "A5GFR3-1", "url": "https://www.uniprot.org/uniprotkb/A5GFR3/entry", "sequence": { "sequence": 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{ "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5GFR3", "url": "https://www.uniprot.org/uniprotkb/A5GFR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3HR72-1", "protein_name": "Kelch domain-containing protein 3", 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"MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPAARGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACVLGKTMYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG", "length": 382 }, "evidence": [ { "id": "A5GFR3", "url": "https://omabrowser.org/oma/group/A5GFR3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYI2-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "Klhdc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG", "length": 382 }, "evidence": [ { "id": "A5GFR3", "url": "https://omabrowser.org/oma/group/A5GFR3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VEM9-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "Klhdc3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPAVRGQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATMLGNHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYSLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG", "length": 382 }, "evidence": [ { "id": "A5GFR3", "url": "https://omabrowser.org/oma/group/A5GFR3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BQ90-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "KLHDC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRWTVHLEGGPRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVKSAIRGQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGARDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATMLGSHMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGGTSPSPEEGLGDEFDLIDHSDLHILDFSPSLKTLCKLAVIQYNLDQSCLPHDIRWELNAMTTNSNISRPIVSSHG", "length": 382 }, "evidence": [ { "id": "A5GFR3", "url": "https://omabrowser.org/oma/group/A5GFR3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W3D5-1", "protein_name": "Kelch domain-containing protein 3", "gene_name": "Dmel\\CG12081", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0031462", "evidence": [ { "database": "UniProtKB", "id": "A5GFR3", "url": "https://www.uniprot.org/uniprotkb/A5GFR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "meiotic cell cycle", "id": "GO:0051321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051321", "evidence": [ { "database": "UniProtKB", "id": "A5GFR3", "url": "https://www.uniprot.org/uniprotkb/A5GFR3" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process via the C-end degron rule pathway", "id": "GO:0140627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140627", "evidence": [ { "database": "UniProtKB", "id": "A5GFR3", "url": "https://www.uniprot.org/uniprotkb/A5GFR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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"https://www.ensembl.org/id/ENSSSCG00000007517" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007517", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007517", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00433", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00433", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100144530", "url": "https://www.ncbi.nlm.nih.gov/gene/100144530", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000819", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000819", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100144530", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144530", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MVCEQSD", "url": "https://omabrowser.org/oma/group/MVCEQSD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A5GFT5", "url": "https://www.orthodb.org/?gene=A5GFT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11963", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11963", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11963:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11963:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00883", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00883", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001116620", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001116620", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A481CXF3", "url": "https://www.uniprot.org/uniprotkb/A0A481CXF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481CXF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CXF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5GFT5-1", "url": "https://www.uniprot.org/uniprotkb/A5GFT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANVGLQFQASAGDADPQSRPLLLLGQLHHLHRVPWSHVRGKLQPRVTEELWQAALSTLNPNPTDSCPLYLNCATVAALPSRVSRHNSPSAAHFITRLVRTCLPPGTHRCILMVCERSDAFASACALARAFPLFTHRSGAARRPEKKTVVVEFFLVGQDNGPVEVSTLQCLTSATEGVRLAARIVDTPCNEMNTDAFLEEIKKVGQDLGIAPTVIRDEELKTRGFGGIYGVGKAAVHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLGAFRAAVRQGFKDNLHAVFCLAENSVGPKATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDIATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRQCGDLVHPLVFCPELHFCEFTSAVADMKNSVADRDNSPSSCAGLFIASHLGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGGASEDPLLNLVSPLGCEVDPQEGDVERDSKRRRLV", "length": 523, "header": "tr|A5GFT5-1|A5GFT5_PIG Isoform 1 of Probable aminopeptidase NPEPL1 OS=Sus scrofa OX=9823 GN=NPEPL1 PE=1 SV=1 CANONICAL=A5GFT5-1" }, "isoforms": [ { "isoform_ac": "A0A481CXF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A481CXF3/entry", "sequence": { "sequence": "MPFKSSKTSVTSWVALKSWLIMKRKFSISEDGCVELAGISREGCQPKALEQSGCGQDGLWQAALSTLNPNPTDSCPLYLNCATVAALPSRVSRHNSPSAAHFITRLVRTCLPPGTHRCILMVCERSDAFASACALARAFPLFTHRSGAARRPEKKTVVVEFFLVGQDNGPVEVSTLQCLTSATEGVRLAARIVDTPCNEMNTDAFLEEIKKVGQDLGIAPTVIRDEELKTRGFGGIYGVGKAAVHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLGAFRAAVRQGFKDNLHAVFCLAENSVGPKATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDIATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRQCGDLVHPLVFCPELHFCEFTSAVADMKNSVADRDNSPSSCAGLFIASHLGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGGASEDPLLNLVSPLGCEVDPQEGDVERDSKRRRLV", "length": 531, "header": "tr|A0A481CXF3-1|A0A481CXF3_PIG Computationally mapped isoform of Aminopeptidase like 1 OS=Sus scrofa OX=9823 GN=NPEPL1 PE=1 SV=1 CANONICAL=A5GFT5-1" }, "locus": { "chromosome": "17", "start_pos": 58890686, "end_pos": 58873221, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072098.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072098.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061335.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061335.1" } ] } }, { "isoform_ac": "A5GFT5-1", "url": "https://www.uniprot.org/uniprotkb/A5GFT5/entry", "sequence": { "sequence": "MANVGLQFQASAGDADPQSRPLLLLGQLHHLHRVPWSHVRGKLQPRVTEELWQAALSTLNPNPTDSCPLYLNCATVAALPSRVSRHNSPSAAHFITRLVRTCLPPGTHRCILMVCERSDAFASACALARAFPLFTHRSGAARRPEKKTVVVEFFLVGQDNGPVEVSTLQCLTSATEGVRLAARIVDTPCNEMNTDAFLEEIKKVGQDLGIAPTVIRDEELKTRGFGGIYGVGKAAVHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLGAFRAAVRQGFKDNLHAVFCLAENSVGPKATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDIATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRQCGDLVHPLVFCPELHFCEFTSAVADMKNSVADRDNSPSSCAGLFIASHLGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGGASEDPLLNLVSPLGCEVDPQEGDVERDSKRRRLV", "length": 523, "header": "tr|A5GFT5-1|A5GFT5_PIG Isoform 1 of Probable aminopeptidase NPEPL1 OS=Sus scrofa OX=9823 GN=NPEPL1 PE=1 SV=1 CANONICAL=A5GFT5-1" }, "locus": { "chromosome": "17", "start_pos": 58890686, "end_pos": 58875787, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008237.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008237.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008018.1", "url": "https://www.ensembl.org/id/ENSSSCP00000008018.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100144530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144530", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A3E2-1", "protein_name": "Probable aminopeptidase NPEPL1", "gene_name": "Npepl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASVGLQFQASAGDADPQSRPLLLLGQLQHLHRVPWSHVRGKLQPRVTEELWQAALATLNPNPTDSCPLYLNCATVAALPSRVSRHNSPSAAHFITRLVRTCLPPGTHRCILMVCEQPEVFASACALARAFPLFTHRSGASRRTEKRTVMVEFFLVGQDNGPVEVSTLQCLTNATEGVRLAARIVDTPCSEMNTDIFLEEISQVGRELGITPTIIRDEQLKTKGFGGIYGVGKAALHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAILGAFRAAIKQGPSLPVSCGLQGFKDNLHAVFCLAENAVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIIVDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGQKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGRASEDPLLNLVSPLDCEVDAQEDDSVGRDSKRRRLV", "length": 535 }, "evidence": [ { "id": "A5GFT5", "url": "https://omabrowser.org/oma/group/A5GFT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NSZ4-1", "protein_name": "Aminopeptidase like 1", "gene_name": "NPEPL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MANVQLEFQANAGEADPQSRPLLVLGQLHNLHRLPWAQLRGKLQPRVSEELWQSALGTLNPNPTDSCPLYLNYATVAALPSRVSRHNSPSAAQFITRLVRNCLPGGVNRCIVMVCERSEVFASACALARAFPLFTHRSSASRRTEKKTVTVEFFLVGQNNGPIEVETLKCLASATEGIRLAARIVDTPCNEMNTDNFLEEIKKVGKDLGITPTVIRDEELKERGFGGIYGVGKAALHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAILGAFKATVKQGFKDNLHAVFCLAENAVGPRATRPDDIHVLYSGKTVEINNTDAEGRLILADGVAYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNNEEWEKACVKAGRNCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNTPSSCAGLFIASHIGFDWPGVWVHIDIAAPVHAGERATGYGVALLLSLFGGASEDPLLNMVSPLGCNGDSPPEDMERDSKRRRLV", "length": 523 }, "evidence": [ { "id": "A5GFT5", "url": "https://omabrowser.org/oma/group/A5GFT5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6NSR8-1", "protein_name": "Probable aminopeptidase NPEPL1", "gene_name": "Npepl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASVGLQFQASAGDADPQSRPLLLLGQLQHLHRVPWSHVRGKLQPRVTEELWQAALATLNPNPTDSCPLYLNCATVAALPSRVSRHNSPSAAHFITRLVRTCLPPGTHRCILMVCEQTEVFASACALARAFPLFTHRSGASRRAEKRTVMVEFFLVGQDNGPVEVSTLQCLTNATEGVRLAARIVDTPCNEMNTDIFLEEIIQVGKELGITPTIIRDEQLKTKGFGGIYGVGKAALHPPALAILSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFRAAIKQGFKDNLHAVFCLAENAVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIIVDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGRASEDPLLNLVSPLDCEVDAQEGDNMGRDSKRRRLV", "length": 524 }, "evidence": [ { "id": "A5GFT5", "url": "https://omabrowser.org/oma/group/A5GFT5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NDH3-1", "protein_name": "Probable aminopeptidase NPEPL1", "gene_name": "NPEPL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANVGLQFQASAGDSDPQSRPLLLLGQLHHLHRVPWSHVRGKLQPRVTEELWQAALSTLNPNPTDSCPLYLNYATVAALPCRVSRHNSPSAAHFITRLVRTCLPPGAHRCIVMVCEQPEVFASACALARAFPLFTHRSGASRRLEKKTVTVEFFLVGQDNGPVEVSTLQCLANATDGVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTIIRDEELKTRGFGGIYGVGKAALHPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGRASEDPLLNLVSPLGCEVDVEEGDLGRDSKRRRLV", "length": 523 }, "evidence": [ { "id": "A5GFT5", "url": "https://omabrowser.org/oma/group/A5GFT5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "manganese ion binding", "id": "GO:0030145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030145", "evidence": [ { "database": "UniProtKB", "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" } ], "pmid": "" }, { "name": "metalloaminopeptidase activity", "id": "GO:0070006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070006", "evidence": [ { "database": "UniProtKB", "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" } ], "pmid": "" }, { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "A5GFT5", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A5GFT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5GFT5" }, { "id": "PS00631", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00631" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cytosol aminopeptidase", "eco_id": "ECO_0000259", "start_pos": 340, "end_pos": 347, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 339, "end_pos": 341 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A5GFW3-1", "uniprot_ac": "A5GFW3", "uniprot_id": "A5GFW3_PIG", "mass": { "chemical_mass": 48368.0, "monoisotopic_mass": 48368.0 }, "refseq": { "ac": "NP_001103900", "name": "cleavage stimulation factor subunit 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103900" }, "gene_names": [ { "name": "CSTF1", "type": "recommended", "evidence": [ { "id": "A5GFW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5GFW3" } ] }, { "name": "CSTF1", "type": "synonym", "evidence": [ { "id": "NP_001103900", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103900" } ] } ], "protein_names": [ { "name": "Cleavage stimulation factor subunit 1", "type": "recommended", "evidence": [ { "id": "A5GFW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5GFW3/entry#names_and_taxonomy" } ] }, { "name": "Cleavage stimulation factor 50 kDa subunit", "type": "synonym", "evidence": [ { "id": "A5GFW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5GFW3/entry#names_and_taxonomy" } ] }, { "name": "cleavage stimulation factor 3' pre-RNA subunit 1", "type": "synonym", "evidence": [ { "id": "NP_001103900", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103900" } ] }, { "name": "cleavage stimulation factor subunit 1", "type": "synonym", "evidence": [ { "id": "NP_001103900", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001103900" } ] }, { "name": "cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa", "type": "synonym", 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GN=RAB22A PE=1 SV=1 CANONICAL=A5GHL0-1" }, "locus": { "chromosome": "17", "start_pos": 58565173, "end_pos": 58548244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068502.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068502.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059790.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059790.1" } ] } }, { "isoform_ac": "A5GHL0-1", "url": "https://www.uniprot.org/uniprotkb/A5GHL0/entry", "sequence": { "sequence": "MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVLERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDASPPSGGKGFKLRRQPSEPKRSCC", "length": 194, "header": "tr|A5GHL0-1|A5GHL0_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB22A PE=1 SV=1 CANONICAL=A5GHL0-1" }, "locus": { "chromosome": "17", "start_pos": 58565173, "end_pos": 58515230, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008229.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008229.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008010.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008010.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100144535", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100144535", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MHP4-1", "protein_name": "small monomeric GTPase", "gene_name": "RAB22A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAVFVETSAKNAININELFIEISRRIPSTDASPPSGGKGFKLRRQPSEPKRSCC", "length": 194 }, "evidence": [ { "id": "A5GHL0", "url": "https://omabrowser.org/oma/group/A5GHL0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P35285-1", "protein_name": "Ras-related protein Rab-22A", "gene_name": "Rab22a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANPASGGKGFKLRRQPSEPKRSCC", "length": 194 }, "evidence": [ { "id": "A5GHL0", "url": "https://omabrowser.org/oma/group/A5GHL0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P36019-1", "protein_name": "GTP-binding protein YPT53", "gene_name": "YPT53", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDKHTAAIPTLTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRITRDGKVIKFEIWDTAGQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDLLNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKVPCPEQNTRQSSTHDRTITDNQRIDLESTTVESTRETGGCNC", "length": 220 }, "evidence": [ { "id": "A5GHL0", "url": "https://omabrowser.org/oma/group/A5GHL0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9UL26-1", "protein_name": "Ras-related protein Rab-22A", "gene_name": "RAB22A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANLPSGGKGFKLRRQPSEPKRSCC", "length": 194 }, "evidence": [ { "id": "A5GHL0", "url": "https://omabrowser.org/oma/group/A5GHL0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "GDP binding", "id": "GO:0019003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019003", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "phagocytic vesicle membrane", "id": "GO:0030670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030670", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "endosome organization", "id": "GO:0007032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007032", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" }, { "name": "regulation of vesicle size", "id": "GO:0097494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097494", "evidence": [ { "database": "UniProtKB", "id": "A5GHL0", "url": "https://www.uniprot.org/uniprotkb/A5GHL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A5Z0F5-1", "uniprot_ac": "A5Z0F5", "uniprot_id": "A5Z0F5_PIG", "mass": { "chemical_mass": 34621.0, "monoisotopic_mass": 34621.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "A5Z0F5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A5Z0F5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A5Z0F5", "url": "https://www.uniprot.org/uniprotkb/A5Z0F5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/A5Z0F5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000032855", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032855", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PATHQSW", "url": "https://omabrowser.org/oma/group/PATHQSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A5Z0F5", "url": "https://www.uniprot.org/uniprotkb/A5Z0F5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5Z0F5-1", "url": "https://www.uniprot.org/uniprotkb/A5Z0F5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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9627315, "end_pos": 9607576, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013073", "url": "https://www.ensembl.org/id/ENSSSCG00000013073" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013073", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013073", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03506", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03506", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518057", "url": "https://www.ncbi.nlm.nih.gov/gene/100518057", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036400", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036400", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518057", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518057", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGWWMHE", "url": "https://omabrowser.org/oma/group/CGWWMHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "D2D0E5", "url": "https://www.orthodb.org/?gene=D2D0E5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19353:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19353:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001193363", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001193363", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BIG5", "url": "https://www.uniprot.org/uniprotkb/A0A287BIG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "D2D0E5", "url": "https://www.uniprot.org/uniprotkb/D2D0E5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "D2D0E5-1", "url": "https://www.uniprot.org/uniprotkb/D2D0E5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGVGEPGGRPAQLGAPLPTFRWEQIRPHNLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNAQLVEDFRALRQAVEDMKLFEADPVFFALLLGHILAMEVLAWLIIYLLGPGWVPSTLAAFILAISQAQSWCLQHDLGHISIFRKSWWNHLAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSIEYGQKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWTDLLWAASFYIRFFLSYIPLYGVPGALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVWLEAYLHQ", "length": 443, "header": "tr|D2D0E5-1|D2D0E5_PIG Isoform 1 of Fatty acid desaturase 3 OS=Sus scrofa OX=9823 GN=FADS3 PE=4 SV=1 CANONICAL=D2D0E5-1" }, "isoforms": [ { "isoform_ac": "A0A287BIG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIG5/entry", "sequence": { "sequence": "DAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNAQLVEDFRALRQAVEDMKLFEADPVFFALLLGHILAMEVLAWLIIYLLGPGWVPSTLAAFILAISQAQSWCLQHDLGHISIFRKSWWNHLAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSIEYGQKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWTDLLWAASFYIRFFLSYIPLYGVPGALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIISLWPPSVDSHHQGLGSTYHRLRPWPWCSRDISP", "length": 390, "header": "tr|A0A287BIG5-1|A0A287BIG5_PIG Computationally mapped isoform of Fatty acid desaturase 3 OS=Sus scrofa OX=9823 GN=FADS3 PE=4 SV=2 CANONICAL=D2D0E5-1" }, "locus": { "chromosome": "2", "start_pos": 9627029, "end_pos": 9620934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059050.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059050.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055931.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055931.2" } ] } }, { "isoform_ac": "D2D0E5-1", "url": "https://www.uniprot.org/uniprotkb/D2D0E5/entry", "sequence": { "sequence": "MGGVGEPGGRPAQLGAPLPTFRWEQIRPHNLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNAQLVEDFRALRQAVEDMKLFEADPVFFALLLGHILAMEVLAWLIIYLLGPGWVPSTLAAFILAISQAQSWCLQHDLGHISIFRKSWWNHLAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSIEYGQKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWTDLLWAASFYIRFFLSYIPLYGVPGALLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVWLEAYLHQ", "length": 443, "header": "tr|D2D0E5-1|D2D0E5_PIG Isoform 1 of Fatty acid desaturase 3 OS=Sus scrofa OX=9823 GN=FADS3 PE=4 SV=1 CANONICAL=D2D0E5-1" }, "locus": { "chromosome": "2", "start_pos": 9627073, "end_pos": 9607851, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014290.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014290.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013904.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013904.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "D2D0E5", "url": "https://www.uniprot.org/uniprotkb/D2D0E5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518057", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518057", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A9T3-1", "protein_name": "Cytochrome b5 heme-binding domain-containing protein", "gene_name": "LOC428851", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPQTGSTEKERKPVSAFLQLFTWDEIRIHNGRGPSKEQWLVIDRNVYDVSNFSKRHPGGSRVIGHYAGQDATDAFVAFHSDKALVKKYLKSLLIGELAPDQPSFESNKKKSLLEDFRELRCTVEKMGLLNPDSTFFSLIFLHLLVLDAASWLTVWYFGISLVPFLVGMAFFTVAQIQMGWFQHDLGHCSVFRKPKWNHLLQIIVINTLKGLPASWWNHLHNQHHAKPNCFRKDPDLNMHPLLFSLGKTLSVELGKKKKKFMPYNYQHKYFSLLAPLALIPFFQLSIFYFAIRKKKWLELFLVVFYNIRVCLMYIPLMGFNNFMVYYWMSRYFESTWFIWVSQMNHIPMQIDYDKNKDWVSTQLHATCNVNQSLFNDWFTGHLNFQIEHHLFPTMPRHNYQKAAPLVKALCDKHGIEYKSKTLLRAFVDILNSLKESGEHWLEATSFKLRCFCLFN", "length": 456 }, "evidence": [ { "id": "D2D0E5", "url": "https://omabrowser.org/oma/group/D2D0E5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4IFP3-1", "protein_name": "Fatty acid desaturase 3", "gene_name": "FADS3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGGVGEPDWEPGQRGAPLPTLRWEQVRRHNLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNTQLIEDFRALRQAVEDMKLFEAKPAFFGLLLGHILAMEVLAWLMIYMLGPGWVPSTLAALILAISQAQSWCLQHDLGHTSIFRNSRWNHLAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSVEYGKKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWMDLLWAASFYARFLLSYIPFYGIPGALLLFVAVRVLESHWFVWITQMNHIPREIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKALCAKHGLSYEVKPFLTALVDIIRSLKKSGNVWLEAYLHQ", "length": 443 }, "evidence": [ { "id": "D2D0E5", "url": "https://omabrowser.org/oma/group/D2D0E5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IEF4-1", "protein_name": "Fatty acid desaturase 3", "gene_name": "Fads3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGGVGEPGGGPGPREGPAPLGAPLPIFRWEQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHYVRKFLKPLLIGELAPEEPSQDGAQNTQLIEDFRALRQAAEDMKLFEADRTFFALLLGHILAMELLAWLIIYLFGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSVEYGKKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCLQWTDLLWAASFYSRFFLSYAPFYGATGTLLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCTKHGLHYEVKPFLTALVDIIGSLKKSGDIWLDAYLHQ", "length": 449 }, "evidence": [ { "id": "D2D0E5", "url": "https://omabrowser.org/oma/group/D2D0E5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8K1P9-1", "protein_name": "Fatty acid desaturase 3", "gene_name": "Fads3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGGVGEPGGGPGPREGPAPLGAPLPIFRWEQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHSAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLLVYLLGPGWVSSVLAALILAISQAQCWCLQHDLGHASIFPKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSVEYGKKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWTDLLWAASFYSRFFLSYSPFYGATGTLLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLKKSGDIWLDAYLHQ", "length": 449 }, "evidence": [ { "id": "D2D0E5", "url": "https://omabrowser.org/oma/group/D2D0E5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JJE7-1", "protein_name": "Fatty acid desaturase 3", "gene_name": "Fads3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGGVGEPGGGPGPREGPAPLGAPLPIFRWEQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQAAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCLQHDLGHASIFTKSRWNHVAQQFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSVEYGKKKRRYLPYNHQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWTDLLWAASFYSRFFLSYSPFYGATGTLLLFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWASSQLAATCNVEPSLFIDWFSGHLNFQIEHHLFPTMPRHNYRRVAPLVKAFCAKHGLHYEVKPFLTALVDIIGSLKKSGDIWLDAYLHQ", "length": 449 }, "evidence": [ { "id": "D2D0E5", "url": "https://omabrowser.org/oma/group/D2D0E5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y5Q0-1", "protein_name": "Fatty acid desaturase 3", "gene_name": "FADS3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGGVGEPGPREGPAQPGAPLPTFCWEQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTVAPVFLLGESSVEYGKKKRRYLPYNQQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWADLLWAASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEIGHEKHRDWVSSQLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLKKSGDIWLDAYLHQ", "length": 445 }, "evidence": [ { "id": "D2D0E5", "url": "https://omabrowser.org/oma/group/D2D0E5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "D2D0E5", "url": "https://www.uniprot.org/uniprotkb/D2D0E5" } ], "pmid": "" }, { "name": "unsaturated fatty acid 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" } ] } ], "function": [ { "annotation": "Acts as a transcription factor that regulates development of thoracic vertebrae.", "evidence": [ { "database": "UniProtKB", "id": "E1CHH8", "url": "https://www.uniprot.org/uniprotkb/E1CHH8#function" }, { "database": "UniProtKB", "id": "Q3SYK4", "url": "https://www.uniprot.org/uniprotkb/Q3SYK4#function" } ] }, { "annotation": "By using whole-genome sequence data, we show that the VRTN mutation was possibly introgressed from Chinese pigs into European pigs. Our results provide another example showing that introgressed Chinese genes greatly contributed to the development and production of modern European pig breeds. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" }, { "database": "PubMed", "id": "26781738", "url": "https://glygen.org/publication/PubMed/26781738" } ] }, { "annotation": "Genetic diversity of VRTN is the suspected cause of the heterogeneity of the number of vertebrae in commercial-breed pigs. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" }, { "database": "PubMed", "id": "21232157", "url": "https://glygen.org/publication/PubMed/21232157" } ] }, { "annotation": "NR6A1, PLAG1 and VRTN are significantly associated with the number of vertebrae in Chinese Tongcheng x Large White crossbred pigs", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" }, { "database": "PubMed", "id": "29774581", "url": "https://glygen.org/publication/PubMed/29774581" } ] }, { "annotation": "The results of the study suggest that in addition to the maintenance of an appropriate backfat thickness value, VRTN has the potential to act as a genetic marker of IMF (intramuscular fat content).", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" }, { "database": "PubMed", "id": "23480701", "url": "https://glygen.org/publication/PubMed/23480701" } ] }, { "annotation": "These results suggest that LEPR, MC4R, PIK3C3 and VRTN are useful markers for accurately predicting breeding values in Duroc pigs.", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" }, { "database": "PubMed", "id": "24128088", "url": "https://glygen.org/publication/PubMed/24128088" } ] }, { "annotation": "VRTN gene polymorphisms indicated that the number of thoracic vertebrae and length-related traits were significantly associated with the VRTN genotype", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" }, { "database": "PubMed", "id": "25187328", "url": "https://glygen.org/publication/PubMed/25187328" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "E1CHH8", "url": "https://www.uniprot.org/uniprotkb/E1CHH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VRTN", "url": "https://www.uniprot.org/uniprotkb/E1CHH8", "locus": { "chromosome": "7", "start_pos": 97624273, "end_pos": 97614707, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002361", "url": "https://www.ensembl.org/id/ENSSSCG00000002361" } ] } } ], "crossref": [ { "id": "E1CHH8", "url": "https://alphafold.ebi.ac.uk/entry/E1CHH8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd22791", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22791", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157734", "url": "https://www.ncbi.nlm.nih.gov/gene/100157734", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010921", "url": 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"Protein Classification" ] }, { "id": "PTHR16081:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16081:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "E1CHH8", "url": "https://www.uniprot.org/uniprotkb/E1CHH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "E1CHH8-1", "url": "https://www.uniprot.org/uniprotkb/E1CHH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSREQLVLQVLQELQEAVESEGLEGLVGAALEAKQVLSSFALPTCREGGPGPQVLEVDSVALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDSGLSLELRARTVVEMLLHRHYYLQGMIDSKVMLQAVRYSLCSEESPEMTSLPSATLEAIFDADVKATCFPSSFSNVWHLYALASVLQRNIYSIYPMRNLKIRPYFNRVIRPRRCDHMPATLHIMWAGQPLTNHLFRHQYFAPVVGLEEVEAESATTSLAPTPPALAPLPPPAKTLELLSQDPGLSYSYLCERYSVTKSTFYRWRRQSQEHRQKVATRFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTCQALGPMEELEKLTEEQVAEGLGCSSPAVSSPGMVLMQRAKLYLEHCISLNTLVPYRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPVLSVAGATQPASVGEKALLPWEGEVGEEAGKATGGGQPAPREFLPLRMPLSRWQRRLRREARKQVLSGHLPFCRFRLRYPSLSPSTFWVWKSLARGWPRSLSKLHIQAPTLGKGGIQEVEEKQEKEAGRNVTAAMAPPAGTLQMTASPGEDPGAALGGPSREGALQEGAMAQGRPMVAAAGGRDGQVLVMDMLATTKFKAQAKLFLQKRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLVDG", "length": 698, "header": "sp|E1CHH8-1|VRTN_PIG Isoform 1 of Vertnin OS=Sus scrofa OX=9823 GN=VRTN PE=2 SV=1 CANONICAL=E1CHH8-1" }, "isoforms": [ { "isoform_ac": "E1CHH8-1", "url": "https://www.uniprot.org/uniprotkb/E1CHH8/entry#E1CHH8-1", "sequence": { "sequence": "MTSREQLVLQVLQELQEAVESEGLEGLVGAALEAKQVLSSFALPTCREGGPGPQVLEVDSVALSLYPEDAPRNMLPLVCKGEGSLLFEAASMLLWGDSGLSLELRARTVVEMLLHRHYYLQGMIDSKVMLQAVRYSLCSEESPEMTSLPSATLEAIFDADVKATCFPSSFSNVWHLYALASVLQRNIYSIYPMRNLKIRPYFNRVIRPRRCDHMPATLHIMWAGQPLTNHLFRHQYFAPVVGLEEVEAESATTSLAPTPPALAPLPPPAKTLELLSQDPGLSYSYLCERYSVTKSTFYRWRRQSQEHRQKVATRFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTCQALGPMEELEKLTEEQVAEGLGCSSPAVSSPGMVLMQRAKLYLEHCISLNTLVPYRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPVLSVAGATQPASVGEKALLPWEGEVGEEAGKATGGGQPAPREFLPLRMPLSRWQRRLRREARKQVLSGHLPFCRFRLRYPSLSPSTFWVWKSLARGWPRSLSKLHIQAPTLGKGGIQEVEEKQEKEAGRNVTAAMAPPAGTLQMTASPGEDPGAALGGPSREGALQEGAMAQGRPMVAAAGGRDGQVLVMDMLATTKFKAQAKLFLQKRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLVDG", "length": 698, "header": "sp|E1CHH8-1|VRTN_PIG Isoform 1 of Vertnin OS=Sus scrofa OX=9823 GN=VRTN PE=2 SV=1 CANONICAL=E1CHH8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 258, "start_aa": "Thr", "end_pos": 258, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr258", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Identification of a second gene associated with variation in vertebral number in domestic pigs.", "journal": "BMC Genet.", "date": "2011", "authors": "Mikawa Satoshi, Sato Shuji, Nii Masahiro, Morozumi Takeya, Yoshioka Gou, Imaeda Noriaki, Yamaguchi Tsuneko, Hayashi Takeshi, Awata Takashi", "evidence": [ { "database": "UniProtKB", "id": "E1CHH8", "url": "https://www.uniprot.org/uniprotkb/E1CHH8" }, { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" } ], "reference": [ { "type": "PubMed", "id": "21232157", "url": "https://glygen.org/publication/PubMed/21232157" } ] }, { "title": "Association of swine vertnin (VRTN) gene with production traits in Duroc pigs improved using a closed nucleus breeding system.", "journal": "Animal science journal = Nihon chikusan Gakkaiho", "date": "2013-03", "authors": "Hirose Kensuke, Mikawa Satoshi, Okumura Naohiko, Noguchi Go, Fukawa Kazuo, Kanaya Naoe, Mikawa Ayumi, Arakawa Aisaku, Ito Tetsuya, Hayashi Yoichi, Tachibana Fumio, Awata Takashi", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" } ], "reference": [ { "type": "PubMed", "id": "23480701", "url": "https://glygen.org/publication/PubMed/23480701" } ] }, { "title": "Evaluation of effects of multiple candidate genes (LEP, LEPR, MC4R, PIK3C3, and VRTN) on production traits in Duroc pigs.", "journal": "Animal science journal = Nihon chikusan Gakkaiho", "date": "2014-03", "authors": "Hirose Kensuke, Ito Tetsuya, Fukawa Kazuo, Arakawa Aisaku, Mikawa Satoshi, Hayashi Yoichi, Tanaka Kazuaki", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" } ], "reference": [ { "type": "PubMed", "id": "24128088", "url": "https://glygen.org/publication/PubMed/24128088" } ] }, { "title": "Effect of VRTN gene polymorphisms on Duroc pig production and carcass traits, and their genetic relationships.", "journal": "Animal science journal = Nihon chikusan Gakkaiho", "date": "2015-02", "authors": "Nakano Hikaru, Sato Shuji, Uemoto Yoshinobu, Kikuchi Takashi, Shibata Tomoya, Kadowaki Hiroshi, Kobayashi Eiji, Suzuki Keiichi", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" } ], "reference": [ { "type": "PubMed", "id": "25187328", "url": "https://glygen.org/publication/PubMed/25187328" } ] }, { "title": "Possible introgression of the VRTN mutation increasing vertebral number, carcass length and teat number from Chinese pigs into European pigs.", "journal": "Scientific reports", "date": "2016-01-19", "authors": "Yang Jie, Huang Lusheng, Yang Ming, Fan Yin, Li Lin, Fang Shaoming, Deng Wenjiang, Cui Leilei, Zhang Zhen, Ai Huashui, Wu Zhenfang, Gao Jun, Ren Jun", "evidence": [ { "database": "RefSeq", "id": "NP_001182042", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001182042" } ], "reference": [ { "type": "PubMed", "id": "26781738", "url": "https://glygen.org/publication/PubMed/26781738" } ] }, { "title": "Association of polymorphisms in NR6A1, PLAG1 and VRTN with the number of vertebrae in Chinese Tongcheng\u00a0\u00d7\u00a0Large White crossbred pigs.", "journal": "Animal genetics", "date": "2018-08", "authors": "Zhang Yu, Wang Meng, Yuan Jiao, Zhou Xiang, Xu Sanping, Liu Bang", "evidence": [ { "database": "RefSeq", 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{ "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RF21-1", "uniprot_ac": "F1RF21", "uniprot_id": "F1RF21_PIG", "mass": { "chemical_mass": 56456.0, "monoisotopic_mass": 56456.0 }, "refseq": { "ac": "XP_005661578", "name": "ankyrin repeat domain-containing protein 34B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661578" }, "gene_names": [ { "name": "ANKRD34B", "type": "recommended", "evidence": [ { "id": "F1RF21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RF21" } ] }, { "name": "ANKRD34B", "type": "synonym", "evidence": [ { "id": "XP_005661578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661578" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain 34B", "type": "synonym", "evidence": [ { "id": "F1RF21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RF21/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 34B", "type": "synonym", "evidence": [ { "id": "XP_005661578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661578" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RF21", "url": "https://www.uniprot.org/uniprotkb/F1RF21" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD34B", "url": "https://www.uniprot.org/uniprotkb/F1RF21", "locus": { "chromosome": "2", "start_pos": 89155769, "end_pos": 89171325, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014124", "url": "https://www.ensembl.org/id/ENSSSCG00000014124" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014124", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014124", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513200", "url": "https://www.ncbi.nlm.nih.gov/gene/100513200", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513200", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513200", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFPLDHN", "url": "https://omabrowser.org/oma/group/AFPLDHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RF21", "url": "https://www.orthodb.org/?gene=F1RF21", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24156", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24156", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24156:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24156:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005661578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661578", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RF21", "url": "https://www.uniprot.org/uniprotkb/F1RF21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RF21-1", "url": "https://www.uniprot.org/uniprotkb/F1RF21-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEGIEISSDGKSLIKAVHQSRLRLTRLLLEGGAYINESNDRGETPLMIACKTKHVDHQSVSKAKMVKYLLENNADPNIQDKSGKTALMHACLEKAGPEVVSLLLKSGADLSLQDHSSYSALVYAINSEDRETLKVLLSACKAKGKEVIIITTAKSPSGRHTTKQYLNMPPVDMDGCHPPATCATPSEIDLKTASSPPSHSSETEMTLFGFKDLEAPGSSDDTRDPDSPVRKPGMAPNGPKLPQASHWIKSPPLLMHQNRVASLQEELQDITPEEELSYKTNGLALSKRFITRHQSIDVKDTAHLLRAFDQASSRKMSYDEINYQSFFSEGNQQCIEIPVDQDSDSNQTIFASTLRNIVQKRNSGANHYSSDSQLSAGLTPTTLEDGKALIGKKKILSPSPSLLSGSKELLENIPPGPLSRRNHALLERRGSGAFSLDHNITQTRPGFLPPLNVNPHPPISDINVNKISNLLSCGQKVLMPTVPMYPKEFRSKKMLLRRQSLQTEQIKQLVNF", "length": 513, "header": "tr|F1RF21-1|F1RF21_PIG Isoform 1 of Ankyrin repeat domain 34B OS=Sus scrofa OX=9823 GN=ANKRD34B PE=3 SV=2 CANONICAL=F1RF21-1" }, "isoforms": [ { "isoform_ac": "F1RF21-1", "url": "https://www.uniprot.org/uniprotkb/F1RF21/entry", "sequence": { "sequence": "MDEGIEISSDGKSLIKAVHQSRLRLTRLLLEGGAYINESNDRGETPLMIACKTKHVDHQSVSKAKMVKYLLENNADPNIQDKSGKTALMHACLEKAGPEVVSLLLKSGADLSLQDHSSYSALVYAINSEDRETLKVLLSACKAKGKEVIIITTAKSPSGRHTTKQYLNMPPVDMDGCHPPATCATPSEIDLKTASSPPSHSSETEMTLFGFKDLEAPGSSDDTRDPDSPVRKPGMAPNGPKLPQASHWIKSPPLLMHQNRVASLQEELQDITPEEELSYKTNGLALSKRFITRHQSIDVKDTAHLLRAFDQASSRKMSYDEINYQSFFSEGNQQCIEIPVDQDSDSNQTIFASTLRNIVQKRNSGANHYSSDSQLSAGLTPTTLEDGKALIGKKKILSPSPSLLSGSKELLENIPPGPLSRRNHALLERRGSGAFSLDHNITQTRPGFLPPLNVNPHPPISDINVNKISNLLSCGQKVLMPTVPMYPKEFRSKKMLLRRQSLQTEQIKQLVNF", "length": 513, "header": "tr|F1RF21-1|F1RF21_PIG Isoform 1 of Ankyrin repeat domain 34B OS=Sus scrofa OX=9823 GN=ANKRD34B PE=3 SV=2 CANONICAL=F1RF21-1" }, "locus": { "chromosome": "2", "start_pos": 89158124, "end_pos": 89156586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069976.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069976.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063023.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063023.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 185, "start_aa": "Thr", "end_pos": 185, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr185", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RF21", "url": "https://www.uniprot.org/uniprotkb/F1RF21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513200", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513200", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RSA7-1", "protein_name": "Ankyrin repeat domain 34B", "gene_name": "ANKRD34B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNQTVELPTEGNSLIRAVYQSRLRLTRLLLEGGAYINESNNRGETPLMIACKTQHVDSQSVSKAKMVKYLLENKADPNIQDKSGKTALMHACIEKAGPEVVSLLLKSGADPSLQDHSDCSALVYAINSEDKETLKVLLNACRARGKEVIIITTDKSPSGRQTTKQYLNVSPADLEECCSTASCISPSEIELKSSPPLSGSDGTKRALFSFKDLEHPRSTDHSQPVPPRNSSSSDIGSSLAHLQQLQSEPWVKSSPSLFHQGKVSSLYEELQDITPEELSSKANGFALSKRFVTRHQNVDIKDTANVLKTADKNGSKKLYEEINYQTCYREEEHLPSGILGGKYENSSLKQISFISNLSTIIKKRNLGANHYSSDSQLTTTVHPAAAEDSKSVIGKKKTVSSSHSLFSSSRGLLEKIRSVPMSRKNETFRERRGSGALLLDNTAQTRPGFLPPLNVNLQPQIPAINFLHKVSGVISYGQKHLIPAAPASLSETKNTKTLLRRQSLQTEQIKQLVNF", "length": 515 }, "evidence": [ { "id": "F1RF21", "url": "https://omabrowser.org/oma/group/F1RF21/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8M2BJQ9-1", "protein_name": "Ankyrin repeat domain 34Bb", "gene_name": "ankrd34bb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDSVEVRTDGNSLLKAVYLCRLRLTRLLLEGGAYINESNERGETPLMVACKSHHSDAQSVPKPKIIRYLLENGADPNIQDKSGKTALMHACMERAGEEVLSLLLSSGADPSLEDHTGSSALVYAVNAGDKDALRVLLDACKAKGKEVIIITTDKLPSGRQMTKQYLNVPPPPNLEDRLHCAPASCMCPSEIKLCTPHISPPTNNRSEINLGSTQTLPISKPGSPTQVSSPLQAASVAKLLHLQRLHSEPWLKIPSSLLLQQSKSSSLTEELLDITPEEELSFGYNGCRPPMKAMVARHQSIDIKDTTGLLRAFEMTSDAERERKNEQKWLSRKMSYDGELLPHSTSHQNLKQASITDTLPVERDPDCLPNLAISSLRNVFRRRNIGMDHYSSDSQLPQFGSQPSEDLGKTGGGGTGGVEKRKLVISRSSTLSGSRESLESLVQRRSPAMLERRGSGALLLDHISQTRPGYLPPLNPHTPIPDIKANAGVGSKPVVGTAPIVAGSRHFVPCAPNHPRDYKNKKSLLRRHSMQTEQIKQLVNFEEIFGQ", "length": 548 }, "evidence": [ { "id": "F1RF21", "url": "https://omabrowser.org/oma/group/F1RF21/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PLL1-1", "protein_name": "Ankyrin repeat domain-containing protein 34B", "gene_name": "ANKRD34B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDEGMEISSEGNSLIKAVHQSRLRLTRLLLEGGAYINESNDRGETPLMIACKTKHVDHQSVSKAKMVKYLLENNADPNIQDKSGKTALMHACLEKAGPEVVSLLLKSGADLSLQDHSSYSALVYAINSEDTETLKVLLSACKAKGKEVIIITTAKLPCGKHTTKQYLNMPPVDIDGCHSPATCTTPSEIDIKTASSPLSHSSETELTLFGFKDLELAGSNDDTWDPGSPVRKPALAPKGPKLPHAPPWVKSPPLLMHQNRVASLQEELQDITPEEELSYKTNGLALSKRFITRHQSIDVKDTAHLLRAFDQASSRKMSYDEINCQSYLSEGNQQCIEVPVDQDPDSNQTIFASTLRSIVQKRNLGANHYSSDSQLSAGLTPPTSEDGKALIGKKKILSPSPSQLSESKELLENIPPGPLSRRNHAVLERRGSGAFPLDHSVTQTRQGFLPPLNVNSHPPISDINVNNKICSLLSCGQKVLMPTVPIFPKEFKSKKMLLRRQSLQTEQIKQLVNF", "length": 514 }, "evidence": [ { "id": "F1RF21", "url": "https://omabrowser.org/oma/group/F1RF21/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZKP1-1", "protein_name": "Ankyrin repeat domain 34B", "gene_name": "Ankrd34b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDEGSEVSTDGNSLIKAVHQSRLRLTRLLLEGGAYINESNDRGETPLMIACKTKHVDQQSVGRAKMVKYLLENSADPNIQDKSGKSALMHACLERAGPEVVSLLLKSGADLSLQDHSGYSALVYAINAEDRDTLKVLLSACQAKGKEVIIITTAKSPSGRHTTQQYLNMPPADMDGSHPPATPSEIDIKTASLPLSYSSETDLTLFGFKDRELSGSSDNTWDPDSPRRRPGMATNGPKLSQAPAWIKSTPSLKHQARVASLQEELQDISPEEEVAYKTNALALSKRFITRHQSIDVKDTVHLLRAFDQVNSRKMSYDEINYHSLFPEGNQSCVETPTDQDPDSSQIFASTLKNIVQKRNSGANHYSSDSQLAEGITPPTSEDGKASKKKIFAPSPSLLSGSKELVETAPPGPLSRRNHAVLERRGSGAFPIDHSLAQSRPGFLPPLNVNPHPPITDIGVNNKICGLLSCGQKVLMPTAPIFPKEFKTKKMLLRRQSLQTEQIKQLVNF", "length": 508 }, "evidence": [ { "id": "F1RF21", "url": "https://omabrowser.org/oma/group/F1RF21/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UUF8-1", "protein_name": "Ankyrin repeat domain-containing protein 34B", "gene_name": "Ankrd34b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"database": "Ensembl Gene", "id": "ENSSSCG00000008047", "url": "https://www.ensembl.org/id/ENSSSCG00000008047" } ] } } ], "crossref": [ { "id": "F1RFA4", "url": "https://alphafold.ebi.ac.uk/entry/F1RFA4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008047", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008047", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QJ37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ37-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFA4-1", "url": "https://www.uniprot.org/uniprotkb/F1RFA4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLH8", "url": "https://www.uniprot.org/uniprotkb/I3LLH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLH8-1", "url": "https://www.uniprot.org/uniprotkb/I3LLH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGAMAVRVTAAHTAEARAEAGREAGDRGVAAAAAAALAPSGFLGLPAPFSEEDEDDVHRCGRCQAEFTTLEDFVQHKLQKACQRVPQEALPATPAATAALLGQEVEPAAGPEEPVTVAHIVVEAAALAADISHAPDIVGGGHIKEVIVASEAEPGDSEMAEAPGSPRHQGPGLPGEGEQAQVKLLVNKDGRYVCSLCHKTFKTGSILKAHMVTHSSRKDHECKLCGASFRTKGSLIRHHRRHTDERPYKCAKCGKSFRESGALTRHLKSLTPCTEKIRFSLSKDVAVGKEDAPAGSSASSVGTVTSSSVTSEPMETSPVIHLVTDAKGTVIHEVHVQMQELPLGMKALAPESPGPEDLPSSGEGSRENLLHQAMQNSGIVLERVAGEEGALEPAPPTASSPQPLVMVPQLPLLEVEQVETQMASQASAVPRTHPCPQCSETFPTAATLEAHKRGHAGPRPFTCMQCGKAFPKAYLLKKHQEVHVHERRFRCGDCGKLYKTIAHVRGHRRVHSDERPYPCPECGKRYKTKNAQQVHFRTHLEEKPHVCPFCSRGFREKGSLVRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTKGGCLLEVEELLVSEESPAAAAAVLAEDPHTVLVEFSSVVADTQEYIIEASADDAETSEAAEIIEGAQTEVDSHIMKVVQQIVHQASAGHQIIVQNVTMDQEVGLGPEAAAADTITIATPESLTEQVAMTLASAISEGTVLTARSGTRGSEQATVTMVSSEDIEILEHAGELVIASPEGQLEVQTVIV", "length": 783, "header": "tr|F1RFA4-1|F1RFA4_PIG Isoform 1 of Transcription factor E4F1 OS=Sus scrofa OX=9823 GN=E4F1 PE=4 SV=3 CANONICAL=F1RFA4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJ37-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ37/entry", "sequence": { "sequence": 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"start_pos": 39772168, "end_pos": 39761382, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072216.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072216.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064472.1" } ] } }, { "isoform_ac": "F1RFA4-1", "url": "https://www.uniprot.org/uniprotkb/F1RFA4/entry", "sequence": { "sequence": "MEGAMAVRVTAAHTAEARAEAGREAGDRGVAAAAAAALAPSGFLGLPAPFSEEDEDDVHRCGRCQAEFTTLEDFVQHKLQKACQRVPQEALPATPAATAALLGQEVEPAAGPEEPVTVAHIVVEAAALAADISHAPDIVGGGHIKEVIVASEAEPGDSEMAEAPGSPRHQGPGLPGEGEQAQVKLLVNKDGRYVCSLCHKTFKTGSILKAHMVTHSSRKDHECKLCGASFRTKGSLIRHHRRHTDERPYKCAKCGKSFRESGALTRHLKSLTPCTEKIRFSLSKDVAVGKEDAPAGSSASSVGTVTSSSVTSEPMETSPVIHLVTDAKGTVIHEVHVQMQELPLGMKALAPESPGPEDLPSSGEGSRENLLHQAMQNSGIVLERVAGEEGALEPAPPTASSPQPLVMVPQLPLLEVEQVETQMASQASAVPRTHPCPQCSETFPTAATLEAHKRGHAGPRPFTCMQCGKAFPKAYLLKKHQEVHVHERRFRCGDCGKLYKTIAHVRGHRRVHSDERPYPCPECGKRYKTKNAQQVHFRTHLEEKPHVCPFCSRGFREKGSLVRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTKGGCLLEVEELLVSEESPAAAAAVLAEDPHTVLVEFSSVVADTQEYIIEASADDAETSEAAEIIEGAQTEVDSHIMKVVQQIVHQASAGHQIIVQNVTMDQEVGLGPEAAAADTITIATPESLTEQVAMTLASAISEGTVLTARSGTRGSEQATVTMVSSEDIEILEHAGELVIASPEGQLEVQTVIV", "length": 783, "header": "tr|F1RFA4-1|F1RFA4_PIG Isoform 1 of Transcription factor E4F1 OS=Sus scrofa OX=9823 GN=E4F1 PE=4 SV=3 CANONICAL=F1RFA4-1" }, "locus": { "chromosome": "3", "start_pos": 39772168, "end_pos": 39762386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008819.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008819.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008595.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008595.4" } ] } }, { "isoform_ac": "I3LLH8-1", "url": "https://www.uniprot.org/uniprotkb/I3LLH8/entry", "sequence": { "sequence": "MEGAMAVRVTAAHTAEARAEAGREAGDRGVAAAAAAALAPSGFLGLPAPFSEEDEDDVHRCGRCQAEFTTLEDFVQHKLQKACQRVPQEALPATPAATAALLGQEVEPAAGPEEPVTVAHIVVEAAALAADISHAPDIVGGGHIKEVIVASEAEPGDSEMAEAPGSPRHQGPGLPGEGEQAQVKLLVNKDGRYVCSLCHKTFKTGSILKAHMVTHSSRKDHECKLCGASFRTKGSLIRHHRRHTDERPYKCAKCGKSFRESGALTRHLKSLTPCTEKIRFSLSKDVAVGKEDAPAGSSASSVGTVTSSSVTSEPMETSPVIHLVTDAKGTVIHEVHVQMQELPLGMKALAPESPGPEDLPSSGEGSRENLLHQFCSRGFREKGSLVRHVRHHTGEKPFKCYKCGRGFAEHGTLNRHLRTKGGCLLEVEELLVSEESPAAAAAVLAEDPHTVLVEFSSVVADTQEYIIEASADDAETSEAAEIIEGAQTEVDSHIMKVVQQIVHQASAGHQIIVQNVTMDQEVGLGPEAAAADTITIATPESLTEQVAMTLASAISEGTVLTARSGTRGSEQATVTMVSSEDIEILEHAGELVIASPEGQLEVQTVIV", "length": 607, "header": "tr|I3LLH8-1|F1RFA4_PIG Computationally mapped isoform of Transcription factor E4F1 OS=Sus scrofa OX=9823 GN=E4F1 PE=4 SV=3 CANONICAL=F1RFA4-1" }, "locus": { "chromosome": "3", "start_pos": 39772168, "end_pos": 39762386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026713.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026713.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024948.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024948.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 94, "start_aa": "Thr", "end_pos": 94, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr94", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LLH8", "url": "https://www.uniprot.org/uniprotkb/I3LLH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 9, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "cAMP response element binding", "id": "GO:0035497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035497", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RFA4", "url": "https://www.uniprot.org/uniprotkb/F1RFA4" } 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFI5/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 553", "type": "synonym", "evidence": [ { "id": "F1RFI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFI5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 48 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005653074", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653074" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1RFI5", "url": "https://www.uniprot.org/uniprotkb/F1RFI5#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RFI5", "url": "https://www.uniprot.org/uniprotkb/F1RFI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF48", "url": "https://www.uniprot.org/uniprotkb/F1RFI5", "locus": { "chromosome": "3", "start_pos": 17921033, "end_pos": 17925590, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007801", "url": "https://www.ensembl.org/id/ENSSSCG00000007801" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007801", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007801", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621309", "url": "https://www.ncbi.nlm.nih.gov/gene/100621309", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MEPQDFG", "url": "https://omabrowser.org/oma/group/MEPQDFG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RFI5", "url": "https://www.orthodb.org/?gene=F1RFI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24393:SF100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24393:SF100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653074", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653074", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RFI5", "url": "https://www.uniprot.org/uniprotkb/F1RFI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFI5-1", "url": "https://www.uniprot.org/uniprotkb/F1RFI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERAVGSWGPDLRGPDDREQLRSARTGEGRGGAPTWAGLGSENVAMSQPDEFAHGPQEDDLGFKEEEDLAPGHEVGSASLKPEGIQTWDDLWVQREGPGKPQARDRGPRLLGEPRWGQASDRAAVCGECGKSFRQMSDLVKHQRTHTGEKPYKCGVCGKGFGDSSARIKHQRTHSGEKPYRARPPAQGPPKIPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQRTHRGEQPPRPVVPRRQPSRAATAATQGPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGCDVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGERPHACPECDRTFSLSSTLLRHRLTHMEPQDFSFPGYPLAPLIPSPPPSSSPPPPPLGTSPPLTPRSPSHSGDGPFGLPGLEPEPVGPQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFADSSARVKHLRTHRGERARPPPPSTLLRPHNPPGPAPTAPRSRVRAQPSGPSQPHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARIKHQRGHLVLRPFGTGDGRARPLKEEPPTGLE", "length": 637, "header": "tr|F1RFI5-1|F1RFI5_PIG Isoform 1 of Zinc finger protein 48 OS=Sus scrofa OX=9823 GN=ZNF48 PE=3 SV=3 CANONICAL=F1RFI5-1" }, "isoforms": [ { "isoform_ac": "F1RFI5-1", "url": "https://www.uniprot.org/uniprotkb/F1RFI5/entry", "sequence": { "sequence": "MERAVGSWGPDLRGPDDREQLRSARTGEGRGGAPTWAGLGSENVAMSQPDEFAHGPQEDDLGFKEEEDLAPGHEVGSASLKPEGIQTWDDLWVQREGPGKPQARDRGPRLLGEPRWGQASDRAAVCGECGKSFRQMSDLVKHQRTHTGEKPYKCGVCGKGFGDSSARIKHQRTHSGEKPYRARPPAQGPPKIPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQRTHRGEQPPRPVVPRRQPSRAATAATQGPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGCDVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGERPHACPECDRTFSLSSTLLRHRLTHMEPQDFSFPGYPLAPLIPSPPPSSSPPPPPLGTSPPLTPRSPSHSGDGPFGLPGLEPEPVGPQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFADSSARVKHLRTHRGERARPPPPSTLLRPHNPPGPAPTAPRSRVRAQPSGPSQPHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARIKHQRGHLVLRPFGTGDGRARPLKEEPPTGLE", "length": 637, "header": "tr|F1RFI5-1|F1RFI5_PIG Isoform 1 of Zinc finger protein 48 OS=Sus scrofa OX=9823 GN=ZNF48 PE=3 SV=3 CANONICAL=F1RFI5-1" }, "locus": { "chromosome": "3", "start_pos": 17925228, "end_pos": 17921822, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008549.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008549.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008330.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008330.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 545, "start_aa": "Thr", "end_pos": 545, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr545", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFI5", "url": "https://www.uniprot.org/uniprotkb/F1RFI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZY01-1", "protein_name": "Zinc finger protein 48", "gene_name": "Znf48", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRQISGSENMEASPVDEFEHTPQERDGPEFKEEEQLGPGHEVGNASLKPEGIQSWDDLWVRREGLGKHQPRDAVPRVLGEPRWGQGSNDRAAVCGECGKSFRQMSDLVKHQRTHTGEKPYKCGVCGKGFGDSSARIKHQRTHTGEKPYRVRPPAPGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQRTHRGDQLPRPVVPRRQPSQAAPEATHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGCDVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGQRPHACPECNRSFSLSSTLLRHRLTHMEPQDFSFSAYPVAPLIPSPPPPPLGTSPSLTPRSPSQSSDGPFGLPGLEPEPGGPQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFADSSARVKHLRTHQGERTRPPPPPTLLRPHNPPGSVPIVPQSRVQGQPSGPSQLHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARIKHQRGHLALRPFGVGDGLPMPLQEESPAGME", "length": 599 }, "evidence": [ { "id": "F1RFI5", "url": "https://omabrowser.org/oma/group/F1RFI5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3US17-1", "protein_name": "Zinc finger protein 48", "gene_name": "Znf48", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEASPGDEFEHSPQERDGPEIKEEEQLAPTLQVGNTSLKPDGIQCWDDLWDRREGLGKRQPRDPVPRILGEPRWGQGSNDRAAVCGECGKSFRQMSDLVKHQRTHTGEKPYKCGVCGKGFGDSSARIKHQRTHTGEKAYRVRPPAPGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQRTHRGDQLPRPVVPRRQPSPAAPAAPHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGCDVCGKEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGQRPHACPECNRSFSLSSTLLRHRLTHVEPQDFSLAAYPVVPLIPSPPPPPLGTSPSLTPRSPSHSSDGPFGLPGLEPEPGGPQAGEPPPPLAGDKPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFADSSARVKHLRTHQGERTRPPPPPSTLLRPHNPPGSVPIVPQSRVQGRPSGPSQLHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARIKHQRGHLALKPFGVGDGPPRPLKEESPAGLE", "length": 591 }, "evidence": [ { "id": "F1RFI5", "url": "https://omabrowser.org/oma/group/F1RFI5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { 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"ENSSSCT00000019509.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019509.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018991.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018991.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFS1", "url": "https://www.uniprot.org/uniprotkb/F1RFS1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517000", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q17QR6-1", "protein_name": "Monocarboxylate transporter 13", "gene_name": "SLC16A13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAYRAEPPDGGWGWMVVLSAFFQSALVFGVLRSFGVFFVEFVAAFEEPAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPAVMTGGILTALGMLLASFATSLTHLYLSIGLLSGSGWALTFTPTLACLSRYFSRRRSLAMGLALTGVGLSSFAFAPLFQWLLNHYAWRGALLLVSALSLHLVACGALLRPLSLAEDPVVGGPGAQITSLLRHGPFLRYTVALTLINTGYFIPYVHLVAHLRDLGWDPLPAAFLLSVAAISDLVGRVASGWLGDAVPGPVARLLMLWTTLTGVILALYPVAEAPTGLVALTMAYGFTSGALTPVAFSVLPELVGTGKIYCGLGLVQMVESIGGLLGAPLSGYLRDVTGNYTASFVVAGAFLLAGSGVLITLPHFFCFSAPTSKPQDLVTEALDTKVPLPEEGLGED", "length": 426 }, "evidence": [ { "id": "F1RFS1", "url": "https://omabrowser.org/oma/group/F1RFS1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66HE2-1", "protein_name": "Monocarboxylate transporter 13", "gene_name": "Slc16a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVHRTEPPDGGWGWMVVLSAFFQSALVFGVLRSFGVFFVEFVAAFEEQAARVSWIASIGIAVQQFGSPIGSALSTKLGPRPVVMTGGILAALGMLLASFATSLTHLYLSIGLLSGSGWALTFTPTLACLSRYFSQRRSLAMGLALTGVGISSFAFAPLFQWLLNNYAWRGALLLVSALSLHLVACGALLRPLSLTEDTAVGGPWAQITSLLCHGPFLRYTVALTLINTGYFIPYVHLVAHLQDLGWDPLPAAFLLSVAAISDLVGRVASGWLGDAVPGPVARLLMLWTTLTGVSLALFPVAQASTTLVVLAVAYGFTSGALTPVAFSVIPELVGTGRIYCGLGLVQMIESVGGLLGAPLSGYLRDVTGNYTASFVVAGAFLLAGSGVLITLPHFFSCISLSTSRPQDLVIEAPDTKIPLPKEEGLGEN", "length": 428 }, "evidence": [ { "id": "F1RFS1", "url": "https://omabrowser.org/oma/group/F1RFS1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7RTY0-1", "protein_name": "Monocarboxylate 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"uniprot_canonical_ac": "F1RFS5-1", "uniprot_ac": "F1RFS5", "uniprot_id": "F1RFS5_PIG", "mass": { "chemical_mass": 24842.0, "monoisotopic_mass": 24842.0 }, "refseq": {}, "gene_names": [ { "name": "SPMIP8", "type": "recommended", "evidence": [ { "id": "F1RFS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFS5" } ] } ], "protein_names": [ { "name": "Sperm microtubule inner protein 8", "type": "synonym", "evidence": [ { "id": "F1RFS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFS5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RFS5", "url": "https://www.uniprot.org/uniprotkb/F1RFS5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPMIP8", "url": "https://www.uniprot.org/uniprotkb/F1RFS5", "locus": { "chromosome": "6", "start_pos": 19838181, "end_pos": 19832473, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002809", "url": "https://www.ensembl.org/id/ENSSSCG00000002809" } ] } } ], "crossref": [ { "id": "F1RFS5", "url": "https://alphafold.ebi.ac.uk/entry/F1RFS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002809", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002809", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR034584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YPQYSRN", "url": "https://omabrowser.org/oma/group/YPQYSRN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR35348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35348:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35348:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22574", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22574", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RFS5", "url": "https://www.uniprot.org/uniprotkb/F1RFS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFS5-1", "url": "https://www.uniprot.org/uniprotkb/F1RFS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARILDLVPWEDGSTHVYASPAILLPMGRQRNQLASVKQQLYHPALPSLRRMDMDSVRACLSDEHCQSTTYCCKDDFDNAHFTLLGVPNKPLQSLDITATGQRVRNRCREGKLAPIAPGISQVDWPRFTRAIEDWSRFVSSAGEFRLPCLGKRVESFSGYAVRYLKPEVTQNWRFCLNQNPSLDRYGQKPLPFDSLNAFRRFSSKYSRVNYLTPWH", "length": 216, "header": "tr|F1RFS5-1|F1RFS5_PIG Isoform 1 of Sperm microtubule inner protein 8 OS=Sus scrofa OX=9823 GN=SPMIP8 PE=4 SV=2 CANONICAL=F1RFS5-1" }, "isoforms": [ { "isoform_ac": "F1RFS5-1", "url": "https://www.uniprot.org/uniprotkb/F1RFS5/entry", "sequence": { "sequence": "MARILDLVPWEDGSTHVYASPAILLPMGRQRNQLASVKQQLYHPALPSLRRMDMDSVRACLSDEHCQSTTYCCKDDFDNAHFTLLGVPNKPLQSLDITATGQRVRNRCREGKLAPIAPGISQVDWPRFTRAIEDWSRFVSSAGEFRLPCLGKRVESFSGYAVRYLKPEVTQNWRFCLNQNPSLDRYGQKPLPFDSLNAFRRFSSKYSRVNYLTPWH", "length": 216, "header": "tr|F1RFS5-1|F1RFS5_PIG Isoform 1 of Sperm microtubule inner protein 8 OS=Sus scrofa OX=9823 GN=SPMIP8 PE=4 SV=2 CANONICAL=F1RFS5-1" }, "locus": { "chromosome": "6", "start_pos": 19838128, "end_pos": 19833673, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003109.3", "url": "https://www.ensembl.org/id/ENSSSCT00000003109.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003028.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003028.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFS5", "url": "https://www.uniprot.org/uniprotkb/F1RFS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M0X8-1", "protein_name": "Testis, prostate and placenta-expressed protein isoform X2", "gene_name": 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"MGVTSLSRRVPRCWRRSAIPLIIFTLLLLYLWAQSLRALSGCRSGTQSCIAKGLPPFQAQQQSGSLEGLEREEPQCLSPHGMLGRIMRPFRASLNPKGDVELSQYLAGWRELVRFLTPLGSIFSFATSEAFAKVTVLEALVHGPEAAHYTSLATMVAWERPGVAPRHSTRNPGSLTMLLLHRALRWSQLCLHRVATGPPGGPDAGAQCSDAYSTALAPHHPWLVRQAAHLAFLAFPGRGRLLELACPGVKEAEARAALAQAAGTLEDVYNRTQGLLAERRLLQLA", "length": 285, "header": "tr|F1RFV4-1|F1RFV4_PIG Isoform 1 of Glycolipid transfer protein domain containing 2 OS=Sus scrofa OX=9823 GN=GLTPD2 PE=3 SV=2 CANONICAL=F1RFV4-1" }, "locus": { "chromosome": "12", "start_pos": 52106042, "end_pos": 52104737, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019496.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019496.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018978.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018978.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFV4", "url": "https://www.uniprot.org/uniprotkb/F1RFV4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513110", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5Y8A9-1", "protein_name": "Glycolipid transfer protein domain containing 2", "gene_name": "Gltpd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLGVSLSPALGRWFRHAIPFAIFTLLLLYISVWLFHEWPFELPAQRTQQSGLWELKLSSPSPALTSLLPVTSGVLPGCRPGVQSCNPERALPSQIGPALRPLVVPEKEEPPCLRPHGLLGRMVSPFLACMSPEGDVELSQYLAGWRELLRLLTPLGSVFAFATSEASNKVTALEAHVHGPDASHYTSLVTMATWERRAVLLERPGTTPRHLARPSGSQTLLLLHRALRWSQLCLHRVATGKLGGPEAGAQCRDAYSTALAPYHPWLIRQAARLAILTLPSRSRLLQLACPGTGEADARVALARAARVLEDVYNRTQGLLASHGLLQLA", "length": 329 }, "evidence": [ { "id": "F1RFV4", "url": "https://omabrowser.org/oma/group/F1RFV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2CF29-1", "protein_name": "Glycolipid transfer protein domain-containing protein 2 precursor", "gene_name": "gltpd2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": 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"https://www.ncbi.nlm.nih.gov/protein/XP_001929540", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AVS7", "url": "https://www.uniprot.org/uniprotkb/A0A287AVS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFX1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFX1-1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPWGEPELLVWRPEAAASEPPVPVGLEVKLGALVLLLVLTLICSLVPICVLRRTGANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPPPREEMRALLGTTNGGPQHWHDGSGVPQAGGALAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELATSEQRILKVILLLAGFALLTGLLFIQV", "length": 324, "header": "tr|F1RFX1-1|F1RFX1_PIG Isoform 1 of Solute carrier family 39 member 1 OS=Sus scrofa OX=9823 GN=SLC39A1 PE=4 SV=3 CANONICAL=F1RFX1-1" }, "isoforms": [ { "isoform_ac": "A0A287AVS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVS7/entry", "sequence": { "sequence": "MGPWGEPELLVWRPEAAASEPPVPVGLEVKLGALVLLLVLTLICSLVPICVLRRTGANPEASAPVPSTRVYPGHGFLPGPGDGADHSGLQGAVGATTSRGDEGSAGNNEWWAAALA", "length": 116, "header": "tr|A0A287AVS7-1|A0A287AVS7_PIG Computationally mapped isoform of Solute carrier family 39 member 1 OS=Sus scrofa OX=9823 GN=SLC39A1 PE=4 SV=2 CANONICAL=F1RFX1-1" }, "locus": { "chromosome": "4", "start_pos": 95732366, "end_pos": 95730385, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062460.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062460.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048014.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048014.3" } ] } }, { "isoform_ac": "F1RFX1-1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1/entry", "sequence": { "sequence": "MGPWGEPELLVWRPEAAASEPPVPVGLEVKLGALVLLLVLTLICSLVPICVLRRTGANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPPPREEMRALLGTTNGGPQHWHDGSGVPQAGGALAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELATSEQRILKVILLLAGFALLTGLLFIQV", "length": 324, "header": "tr|F1RFX1-1|F1RFX1_PIG Isoform 1 of Solute carrier family 39 member 1 OS=Sus scrofa OX=9823 GN=SLC39A1 PE=4 SV=3 CANONICAL=F1RFX1-1" }, "locus": { "chromosome": "4", "start_pos": 95732859, "end_pos": 95730385, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007188.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007188.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006995.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006995.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFX1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153098", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153098", "resource": "KEGG Pathway" }, { "id": "R-SSC-442380", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-442380", "resource": "Reactome", "description": "Zinc influx into cells by the SLC39 gene family" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HC09-1", "protein_name": "Zinc transporter ZIP1 isoform X1", "gene_name": "Slc39a1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGPWGEPELLVWRPEAIASEPSVPVGLEVKLGALVLLLLLTLVCSLVPVCVLRRPGASHEASASGQKILSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSSPPHPEETRALLGSVNGGPQHWHDGPGIPQASGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLFHKGILAVSLSLRLLQSHLRVQVVAGCGILFSCMTPLGIGLGTALSESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELATSEQRILKVILLLAGFALLTGLLFIEI", "length": 324 }, "evidence": [ { "id": "F1RFX1", "url": "https://omabrowser.org/oma/group/F1RFX1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3SYU3-1", "protein_name": "Zinc transporter ZIP1", "gene_name": "SLC39A1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPWGEPELLVWRPEAAASEAPVPMGLEVKLGALVLLLVLTLICSLVPVCVLRRPGANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLGAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPPPREETRALLGTVNGGPQHWHDGLGVPQAGGASSAPSALRACVLVFSLALHSVFEGLAVGLQRDQARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGTALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELATSEQRILKVILLLAGFALLTGLLFIQI", "length": 324 }, "evidence": [ { "id": "F1RFX1", "url": "https://omabrowser.org/oma/group/F1RFX1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q94EG9-1", "protein_name": "Zinc transporter 11", "gene_name": "ZIP11", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSRSLVFFFLFLVLVVPCLSHGTGGDHDDDEASHVKSSDLKSKSLISVKIACLVIIFVLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSKTQNDLELQGEDKSNQRSATTETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVLFGVVVIAIVMIWDT", "length": 326 }, "evidence": [ { "id": "F1RFX1", "url": "https://omabrowser.org/oma/group/F1RFX1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NY26-1", "protein_name": "Zinc transporter ZIP1", "gene_name": "SLC39A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGPWGEPELLVWRPEAVASEPPVPVGLEVKLGALVLLLVLTLLCSLVPICVLRRPGANHEGSASRQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSGPSPLEETRALLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELASSEQRILKVILLLAGFALLTGLLFIQI", "length": 324 }, "evidence": [ { "id": "F1RFX1", "url": "https://omabrowser.org/oma/group/F1RFX1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QZ03-1", "protein_name": "Zinc transporter ZIP1", "gene_name": "Slc39a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPWGEPELLVWRPEAVASEPSVPVGLEVKLGALVLLLLLTLICSLVPVCVLRRSGANHEASASGQKALSLVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQTSPPHPEETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRVQVVAGCGILFSCMTPLGIGLGAALAESAGPLHQLAQSVLEGMAAGTFLYITFLEILPQELATSEQRILKVILLLAGFALLTGLLFVQI", "length": 324 }, "evidence": [ { "id": "F1RFX1", "url": "https://omabrowser.org/oma/group/F1RFX1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion transmembrane transporter activity", "id": "GO:0005385", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005385", "evidence": [ { "database": "UniProtKB", "id": "F1RFX1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "zinc ion transmembrane transport", "id": "GO:0071577", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071577", "evidence": [ { "database": "UniProtKB", "id": "F1RFX1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RFX1", "url": "https://www.uniprot.org/uniprotkb/F1RFX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RFX1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 324, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RFX1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RFX1" } ], "lectin_list": [], 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"MEEPGMPHESAEDLFHFNVGGWHFSVPRSKLSQFPDSLLWKEASALTSSESQRLFIDRDGSTFRHVHYYLYTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGKHHLRVRPADIPVAERASLNYWRTWKCISKPSEFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVQYCFLPLDLVAKYPSLVTEDNLLWLAETVALIECECSEFRFIVNFLRSQKILLPDNFSNIDVLEAEVEILEIPELSEAVRLYRMNMGGCSRTSCPPPSPGKGGRTAGLESMKPLYMMALGLLVKYPDSALGQLRIESTLDGSRLYITGNGVLFQHVKNWLGTCRLPLTETISEVYELCAFLDKRDLTYEPVKVALKTHLEPRTLAPMDVFNEEWMAEITVYSPQQIIRVYVGSHWYATTLQTLLKYPELLSNPQRVYWITYGQTLLIHGDGQMFRHVLNFLRLGKLFLPSEFKEWPLLCQEVEEYRIPSLSEALVQCEAYKSWIQEKESENEEAFPIRRLHMVTEGQGSLVEFSRDAKETTACMPMEFQDGSDRTPWNKAKGTPARSSQMEETEQYSRTIQVSLCGGAKRASNPSTYSHCPGLCANPRHWGAHPESPPTKKCTTVNLTQKSETKDPPVTPMQKLISLVREWDMVNYKQWEFQPLPAPRSSSLEEPTLQLPSGNEAVSHPTTSASWKGHSTASEKDPGPQAGTGAGAKDKGPEPTFKPYFPMKRAVTLKGWGKQRPKERASPAPEQSLPEASEVDSTGVILKVTHPPVVGSDGSCMFFEDSIIYTTQMDNLRHMPPTASPQPQEVTFLSFSLSWEEMFYAQKCHRFLTDIILDSIRQKDPKAITAKVVSLANRLWTLHISPKQFVVDLLAITGFKDDRHTQERLYSWVELTLPFARKYSRCVDLLIQRGLSRSVSYSVLSKYLQEG", "length": 927, "header": "tr|F1RFX6-1|F1RFX6_PIG Isoform 1 of Potassium channel tetramerization domain containing 19 OS=Sus scrofa OX=9823 GN=KCTD19 PE=4 SV=4 CANONICAL=F1RFX6-1" }, "isoforms": [ { "isoform_ac": "F1RFX6-1", "url": "https://www.uniprot.org/uniprotkb/F1RFX6/entry", "sequence": { "sequence": "MEEPGMPHESAEDLFHFNVGGWHFSVPRSKLSQFPDSLLWKEASALTSSESQRLFIDRDGSTFRHVHYYLYTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGKHHLRVRPADIPVAERASLNYWRTWKCISKPSEFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVQYCFLPLDLVAKYPSLVTEDNLLWLAETVALIECECSEFRFIVNFLRSQKILLPDNFSNIDVLEAEVEILEIPELSEAVRLYRMNMGGCSRTSCPPPSPGKGGRTAGLESMKPLYMMALGLLVKYPDSALGQLRIESTLDGSRLYITGNGVLFQHVKNWLGTCRLPLTETISEVYELCAFLDKRDLTYEPVKVALKTHLEPRTLAPMDVFNEEWMAEITVYSPQQIIRVYVGSHWYATTLQTLLKYPELLSNPQRVYWITYGQTLLIHGDGQMFRHVLNFLRLGKLFLPSEFKEWPLLCQEVEEYRIPSLSEALVQCEAYKSWIQEKESENEEAFPIRRLHMVTEGQGSLVEFSRDAKETTACMPMEFQDGSDRTPWNKAKGTPARSSQMEETEQYSRTIQVSLCGGAKRASNPSTYSHCPGLCANPRHWGAHPESPPTKKCTTVNLTQKSETKDPPVTPMQKLISLVREWDMVNYKQWEFQPLPAPRSSSLEEPTLQLPSGNEAVSHPTTSASWKGHSTASEKDPGPQAGTGAGAKDKGPEPTFKPYFPMKRAVTLKGWGKQRPKERASPAPEQSLPEASEVDSTGVILKVTHPPVVGSDGSCMFFEDSIIYTTQMDNLRHMPPTASPQPQEVTFLSFSLSWEEMFYAQKCHRFLTDIILDSIRQKDPKAITAKVVSLANRLWTLHISPKQFVVDLLAITGFKDDRHTQERLYSWVELTLPFARKYSRCVDLLIQRGLSRSVSYSVLSKYLQEG", "length": 927, "header": "tr|F1RFX6-1|F1RFX6_PIG Isoform 1 of Potassium channel tetramerization domain containing 19 OS=Sus scrofa OX=9823 GN=KCTD19 PE=4 SV=4 CANONICAL=F1RFX6-1" }, "locus": { "chromosome": "6", "start_pos": 27966215, "end_pos": 27932934, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003079.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003079.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003000.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003000.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFX6", "url": "https://www.uniprot.org/uniprotkb/F1RFX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521969", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521969", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RFX6", "url": "https://www.uniprot.org/uniprotkb/F1RFX6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "F1RFX6", "url": "https://www.uniprot.org/uniprotkb/F1RFX6" } ], "pmid": "" }, { "name": "male meiotic nuclear division", "id": "GO:0007140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007140", "evidence": [ { "database": "UniProtKB", "id": "F1RFX6", "url": "https://www.uniprot.org/uniprotkb/F1RFX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 618, "end_pos": 620, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RFX6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 927, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RFX6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RFX6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RFX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFX6" }, { "id": "PF02214", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel tetramerisation-type BTB", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 83, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 }, { "start_pos": 618, "end_pos": 620 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RFY9-1", "uniprot_ac": "F1RFY9", "uniprot_id": "F1RFY9_PIG", "mass": { "chemical_mass": 41214.0, "monoisotopic_mass": 41214.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM26", "type": "recommended", "evidence": [ { "id": "F1RFY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFY9" } ] } ], "protein_names": [ { "name": "Transmembrane protein 26", "type": "synonym", "evidence": [ { "id": "F1RFY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RFY9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RFY9", "url": "https://www.uniprot.org/uniprotkb/F1RFY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM26", "url": "https://www.uniprot.org/uniprotkb/F1RFY9", "locus": { "chromosome": "14", "start_pos": 64877935, "end_pos": 64925505, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023525", "url": "https://www.ensembl.org/id/ENSSSCG00000023525" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023525", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023525", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR019169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HHGTQYC", "url": "https://omabrowser.org/oma/group/HHGTQYC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22168", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22168", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22168:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22168:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RFY9", "url": "https://www.uniprot.org/uniprotkb/F1RFY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RFY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGLVLLNALATRLLFVLHSLVGVWRVTEVKKEPWYWLLALLNLLLFLEMALTLKYKSGRGYKWFSPAIFVYLISIVPSLWLLEMHHGTQYCNSQSEGMSQNTSSKEDFNQTLMSAEQTNGADDLIETAKVFVNNLSTVCEKVWTLGLHQTFLLMLIIGRWLLPIGGGITRDQLSQLLLMFVGTAADILEFTSETLEEENVRKSPALVYAILIIWTWSMLQFPLDLAVQHVVCPLSMTTRGFPRQFFCQYSADLWNIGISVFIQDGPFLVVRLLLMTYFKVVNQMLVFFAAKNFLVVVLQLYRLMVLALDVRTSLRSKPAGPKGGHRCPGEPAETGVSPGDGRGGSKEGLAIPLQASLVTSEDFPPTS", "length": 368, "header": "tr|F1RFY9-1|F1RFY9_PIG Isoform 1 of Transmembrane protein 26 OS=Sus scrofa OX=9823 GN=TMEM26 PE=4 SV=1 CANONICAL=F1RFY9-1" }, "isoforms": [ { "isoform_ac": "F1RFY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RFY9/entry", "sequence": { "sequence": "MEGLVLLNALATRLLFVLHSLVGVWRVTEVKKEPWYWLLALLNLLLFLEMALTLKYKSGRGYKWFSPAIFVYLISIVPSLWLLEMHHGTQYCNSQSEGMSQNTSSKEDFNQTLMSAEQTNGADDLIETAKVFVNNLSTVCEKVWTLGLHQTFLLMLIIGRWLLPIGGGITRDQLSQLLLMFVGTAADILEFTSETLEEENVRKSPALVYAILIIWTWSMLQFPLDLAVQHVVCPLSMTTRGFPRQFFCQYSADLWNIGISVFIQDGPFLVVRLLLMTYFKVVNQMLVFFAAKNFLVVVLQLYRLMVLALDVRTSLRSKPAGPKGGHRCPGEPAETGVSPGDGRGGSKEGLAIPLQASLVTSEDFPPTS", "length": 368, "header": "tr|F1RFY9-1|F1RFY9_PIG Isoform 1 of Transmembrane protein 26 OS=Sus scrofa OX=9823 GN=TMEM26 PE=4 SV=1 CANONICAL=F1RFY9-1" }, "locus": { "chromosome": "14", "start_pos": 64925366, "end_pos": 64881607, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022284.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022284.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027364.1", "url": "https://www.ensembl.org/id/ENSSSCP00000027364.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RFY9", "url": "https://www.uniprot.org/uniprotkb/F1RFY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y2J7-1", "protein_name": "Transmembrane protein 26", "gene_name": "TMEM26", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELMVLLNALVTRLLFVLHSLIGVWRVTEVKKEPKYWLLALLNLLLCLETGLTLKFKQGRGYKWFSPAIFLYLICIVPSLWLLEIHHGTQYCSNELEAVQLNVTNQDISQSPDSSDGSERIDHHIIRTAKVLVNQLSTICETVWTLALHQTFLLLLVVGRWLLPIGVEITRDQLSQLLLMFVGTAADILEFASETLDIEDVRKNYILINAILAVWTWSMLQFPLDLAVQHIGCKPTASSRQIPSLLLCRYSAELWNIGVSLFIQDGPFFIVRSILMGHFRIFNQMLVFFTAKNILVVILQLYRLAVITLDFRSTILQKSRKGEVGCCPCEPYEATTHATAEQDADMNECVAFPLKEESQAPLEDH", "length": 365 }, "evidence": [ { "id": "F1RFY9", "url": "https://omabrowser.org/oma/group/F1RFY9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ADJ8-1", "protein_name": "Transmembrane protein 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"Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RECNCHY", "url": "https://omabrowser.org/oma/group/RECNCHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF144", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF144", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RFZ4", "url": "https://www.uniprot.org/uniprotkb/F1RFZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RFZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RFZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRARTEGDPAPPQRQPAPPATHPSQKLVLGVQASPPGPPRMLWLLFLTLPCLGGSVPVTPGRGPRHELVGIVGGHDVSTWKYPWQVSLRSYRAKLGRWMHHCGGSLVHPQWVLTAAHCVDSHNLKPQDVRVQVGQLKLYDGDQLTKVKQIIRHPKYLGFAKGGADIALLQLEAPLTLSARVNVVGTPSATLKVPKGKRCSVTGWGNIKHNLSLPPPYHLQEVEVPIVANKVCNKHYRTGPNSKPIKADMLCAGSKGLDSCQGDSGGPLMCSWNGTWVQVGIVSWGRGCGLHNFPGVYIRVMSYVSWIYQYVPRSPGP", "length": 317, "header": "tr|F1RFZ4-1|F1RFZ4_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN=LOC396700 PE=4 SV=2 CANONICAL=F1RFZ4-1" }, "isoforms": [ { "isoform_ac": "F1RFZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RFZ4/entry", "sequence": { "sequence": "MRARTEGDPAPPQRQPAPPATHPSQKLVLGVQASPPGPPRMLWLLFLTLPCLGGSVPVTPGRGPRHELVGIVGGHDVSTWKYPWQVSLRSYRAKLGRWMHHCGGSLVHPQWVLTAAHCVDSHNLKPQDVRVQVGQLKLYDGDQLTKVKQIIRHPKYLGFAKGGADIALLQLEAPLTLSARVNVVGTPSATLKVPKGKRCSVTGWGNIKHNLSLPPPYHLQEVEVPIVANKVCNKHYRTGPNSKPIKADMLCAGSKGLDSCQGDSGGPLMCSWNGTWVQVGIVSWGRGCGLHNFPGVYIRVMSYVSWIYQYVPRSPGP", "length": 317, "header": "tr|F1RFZ4-1|F1RFZ4_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN=LOC396700 PE=4 SV=2 CANONICAL=F1RFZ4-1" }, "locus": { "chromosome": "3", "start_pos": 40598295, "end_pos": 40596404, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008801.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008801.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008577.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008577.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 59, "start_aa": "Thr", "end_pos": 59, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr59", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": 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"PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D4ACZ0-1", "protein_name": "Protease, serine, 34", "gene_name": "Prss34", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCLGMLWFLFLTLPCLGSTMPLTPDSGQELVGIVGGCPVSASRFPWQVSLRFYNMKLSKWEHICGGSLIHPQWVLTAAHCVELKEMEASCFRVQVGQLRLYENDQLMKVAKIIRHPKFSEKLSAPGGADIALLKLDSTVVLSERVHPVSLPAASQRISSKKTWWVAGWGVIEGHRPLPPPCHLREVAVPIVGNSDCEQKYRTYSSLDRTTKIIKDDMLCAGMEGRDSCQADSGGPLVCRWNCSWVQVGVVSWGIGCGLPDFPGVYTRVMSYLSWIHGYVPKFPEPSMGPDRIHTPEDTPATHADPFTPSSSPASLS", "length": 316 }, "evidence": [ { "id": "F1RFZ4", "url": "https://omabrowser.org/oma/group/F1RFZ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": 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N-acetylglucosamine-1-phosphotransferase subunit gamma OS=Sus scrofa OX=9823 GN=GNPTG PE=4 SV=5 CANONICAL=F1RFZ5-1" }, "locus": { "chromosome": "3", "start_pos": 40534157, "end_pos": 40513119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008800.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008800.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008576.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008576.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., 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"url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RG04", "url": "https://www.uniprot.org/uniprotkb/F1RG04" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RG04", "url": "https://www.uniprot.org/uniprotkb/F1RG04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { 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"Protein Classification" ] }, { "id": "PTHR14627:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14627:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003124768", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124768", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG12-1", "url": "https://www.uniprot.org/uniprotkb/F1RG12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVQKVVATAVLVALVSLVLNNVAALTPNWVYQTLEDGRRRSVGLWRSCWLLDRARGGPSPGARPGPADTRDCEALGWGSEAAGFQESRGTVKLQFDMMRACNLVATAALAAGQLTFVLGLTGLPLMSPDSQCWEEAMAAAFQLASFVLVIGLVTFYRIGPYTNLSWSCYLDIGACLLATLAAAMLIWNVLHRREDCMAPRVIVISRSLAARFRRGLDNDYVESPC", "length": 226, "header": "tr|F1RG12-1|F1RG12_PIG Isoform 1 of Transmembrane protein 204 OS=Sus scrofa OX=9823 GN=TMEM204 PE=4 SV=1 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improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514571", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514571", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U1Q9-1", "protein_name": "Transmembrane protein 204", "gene_name": "TMEM204", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTVQKLVATAVLVALVSLILNNAAAFTPNWVYQTLEDGRKRSVGLWKMCWLAERSRAGASTSSRHGQGEERECEALGWGSESAGFQESRSTVKLQFDMMRACNLIATVALTAGQLIFVLGLVEIPIISQDTQWWEEAIAAVFQLASFVLVIGLVTFYRIGPYTNLSWSCYLNIGACLLATLAAAILIWNILHRREDCMAPRVIVISRTLTARFRRGLENDYVESPC", "length": 226 }, "evidence": [ { "id": "F1RG12", "url": "https://omabrowser.org/oma/group/F1RG12/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1R6J6-1", "protein_name": "Transmembrane protein 204", "gene_name": "tmem204", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAVRRLVELAAAVALLSLVLNSVATFSSGWVLQVLDDGRRRSVGLWRACVQEDTHTHELTACQRLSWGSELAGYQESRSTVKLQFDMMRACNLMATVALTVGQLIFLFGLLEISHITQDSQWWEEAIAALFQLASFVLVIGLVTFYRIGPYTHLSYSCYINIAACLFATLAAAMLIWNILHRRDDCLSPSVIVISRSLTTPFRPRLDNDYVESPC", "length": 215 }, "evidence": [ { "id": "F1RG12", "url": "https://omabrowser.org/oma/group/F1RG12/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HBY0-1", "protein_name": "Transmembrane protein 204", "gene_name": "Tmem204", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTVQKLVATAVLVALVSLILNNAAAFTPNWVYQTLEDGRKRSVGLWRSCWLVDRGKGGTSPGARTGQVDTHDCEVLGWGSESAGFQESRGTVKLQFDMMRACNLVATAALAVGQLTFVLGLTGLPLVSPESQCWAEAMAAAFQLASFVLVIGLVTFYRIGPYTNLSWSCYLNIGACLLATLAAAMLIWNILHRREDCMAPRVIVISRSLTARFRRGLENDYVESPC", "length": 226 }, "evidence": [ { "id": "F1RG12", "url": "https://omabrowser.org/oma/group/F1RG12/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0IIE5-1", "protein_name": "Transmembrane protein 204", "gene_name": "TMEM204", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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}, "evidence": [ { "id": "F1RG12", "url": "https://omabrowser.org/oma/group/F1RG12/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "smooth muscle cell differentiation", "id": "GO:0051145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051145", "evidence": [ { "database": "UniProtKB", "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12" } ], "pmid": "" }, { "name": "regulation of vascular endothelial growth factor receptor signaling pathway", "id": "GO:0030947", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030947", "evidence": [ { "database": "UniProtKB", "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12" } ], "pmid": "" }, { "name": "lymph vessel development", "id": "GO:0001945", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001945", "evidence": [ { "database": "UniProtKB", "id": "F1RG12", "url": "https://www.uniprot.org/uniprotkb/F1RG12" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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Plays a pivotal role in proper development and function of ciliated cells through its role in ciliogenesis and/or cilium maintenance. Required for the development and maintenance of the outer segments of rod and cone photoreceptor cells. 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Classification" ] }, { "id": "IPR056155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YAQFMES", "url": "https://omabrowser.org/oma/group/YAQFMES/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15722:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15722:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23385", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23385", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24760", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24760", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24762", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24762", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5610787", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020942503", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942503", "database": 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"MLLYFDHRVEAPDAAGSPSHVCWHPVHPFLAVASVNPALGGSVDIYLEQGECVPNTHMERASRVTILSWHPTRPVLAVGWETGEAVIFNKQDKEQHAVPPTHTADLTVLTWSPSGNYLASGDRLGVLILWRLDQRGRVQGAPLLKHDYGQPLTHCIFRRPPPGEDLVQLAKAAVSGDEKALDMFNWSKSGLGSVLKMGSQEGLSFFVSLTDGTVHHVDEEGKTAWAVATDSCVQALFYVDKRQALVAVTESLLLCLFTVTPEGEAAEVLKVKLSGKTGRRADVALIEGSLLVSATGEAVLRFWDLDRGENYLLSPEEKFGFEKGENINCVSYCEVKGLLAAGTDRGRVATWRKVPSAPSGHGLEGKDRWTLHAPAELPGSITQIKWGSRKSLLAVTSSSSVVVLREQAVSSHFHQQVAVVQVSPRLLSVSCLSAGTTHYLHTDMHVSGVFATKDAVAVWNGKQVVIFEASGAVFRSAGSFLCESPVLAMHEESVYTVEPNRVQVRTWQGTVKQLLLFSETEGNPCFLDVCGNFLVVGTDLAHFKSFDLSRREAKLHCCGKSLAELVPGAGGMVSLRCSASGSKISILLSKADHSPDSKICFYDVDTDTVSVLDLKTGQADGIEASTGQETKSQALGDERLTDLVPVSHFWDQSEPRLFVCEAVREAPDADRRAPAERPPADVLVLAFFVTEEHGFLLQESFPRPPAFQTLLGVQVPYYYFTRKPGEADRETRVDGGSQPGPQMVGRWPLRDFVGLEDCDKATRDAMLNFSVFLTVGDMDEAFRSIRLIKSEAVWENMARMCVKTQRLDVAKVCLGHMGHARGARALREAEREPELEARVAVLAIQLGMLEEAEQLYKKCGRYDLLNRLLQASGQWQRAIEVAERHDRVHLRTTYYNYARHLEANADYSLALSYYEKSDTHRFEVPRMLAEDLQFLERYVNTMKDRTLWRWWAQYLESQAEMDAALHYYGLAQDYFSLVRIHCFQGNIQKAAEIASETGNWAASYHLARQYESQEEVGQAVHFYTRAQAFNNAIRLCKEHGLDDQLMNLALLSSPEDMIEAARYYEEKGEQADRAVVLYHKAGHLSKALELAFATQQFVALQLVAEDLDEKSDPALLTRCSDFFLEHQQYEKAVELLLAARKYQEALQLCLEQNLTITEEMAEKMTVAKDCADLSEESRRELLEQVASCCMRQGSYHLAAKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEVYVMAANYLQSLDWRRDPEIMKNIISFYTRGRAPELLAGFYDACAQVEVDEYQNYDKAHGALTEAYKCLAKAKARSPLDHEARLAQLQSRMTLVKRFMQARRMYAEDPEEALRQGQLLLEELGPDSTVRLGDVCGFLVEGHVQAGDLRTAYRYLEEMQKRLPSARLSYYVSQRALDAVHQGLGVPAMCHGNAEDKDMDEEVVEEVEGGP", "length": 1444, "header": "tr|F1RG13-1|F1RG13_PIG Isoform 1 of Intraflagellar transport protein 140 homolog OS=Sus scrofa OX=9823 GN=IFT140 PE=4 SV=4 CANONICAL=F1RG13-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV71-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV71/entry", "sequence": { "sequence": 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"length": 1489, "header": "tr|A0A5G2QV71-1|A0A5G2QV71_PIG Computationally mapped isoform of Intraflagellar transport protein 140 homolog OS=Sus scrofa OX=9823 GN=IFT140 PE=4 SV=2 CANONICAL=F1RG13-1" }, "locus": { "chromosome": "3", "start_pos": 40367853, "end_pos": 40313562, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069826.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069826.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065853.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065853.2" } ] } }, { "isoform_ac": "F1RG13-1", "url": "https://www.uniprot.org/uniprotkb/F1RG13/entry", "sequence": { "sequence": "MLLYFDHRVEAPDAAGSPSHVCWHPVHPFLAVASVNPALGGSVDIYLEQGECVPNTHMERASRVTILSWHPTRPVLAVGWETGEAVIFNKQDKEQHAVPPTHTADLTVLTWSPSGNYLASGDRLGVLILWRLDQRGRVQGAPLLKHDYGQPLTHCIFRRPPPGEDLVQLAKAAVSGDEKALDMFNWSKSGLGSVLKMGSQEGLSFFVSLTDGTVHHVDEEGKTAWAVATDSCVQALFYVDKRQALVAVTESLLLCLFTVTPEGEAAEVLKVKLSGKTGRRADVALIEGSLLVSATGEAVLRFWDLDRGENYLLSPEEKFGFEKGENINCVSYCEVKGLLAAGTDRGRVATWRKVPSAPSGHGLEGKDRWTLHAPAELPGSITQIKWGSRKSLLAVTSSSSVVVLREQAVSSHFHQQVAVVQVSPRLLSVSCLSAGTTHYLHTDMHVSGVFATKDAVAVWNGKQVVIFEASGAVFRSAGSFLCESPVLAMHEESVYTVEPNRVQVRTWQGTVKQLLLFSETEGNPCFLDVCGNFLVVGTDLAHFKSFDLSRREAKLHCCGKSLAELVPGAGGMVSLRCSASGSKISILLSKADHSPDSKICFYDVDTDTVSVLDLKTGQADGIEASTGQETKSQALGDERLTDLVPVSHFWDQSEPRLFVCEAVREAPDADRRAPAERPPADVLVLAFFVTEEHGFLLQESFPRPPAFQTLLGVQVPYYYFTRKPGEADRETRVDGGSQPGPQMVGRWPLRDFVGLEDCDKATRDAMLNFSVFLTVGDMDEAFRSIRLIKSEAVWENMARMCVKTQRLDVAKVCLGHMGHARGARALREAEREPELEARVAVLAIQLGMLEEAEQLYKKCGRYDLLNRLLQASGQWQRAIEVAERHDRVHLRTTYYNYARHLEANADYSLALSYYEKSDTHRFEVPRMLAEDLQFLERYVNTMKDRTLWRWWAQYLESQAEMDAALHYYGLAQDYFSLVRIHCFQGNIQKAAEIASETGNWAASYHLARQYESQEEVGQAVHFYTRAQAFNNAIRLCKEHGLDDQLMNLALLSSPEDMIEAARYYEEKGEQADRAVVLYHKAGHLSKALELAFATQQFVALQLVAEDLDEKSDPALLTRCSDFFLEHQQYEKAVELLLAARKYQEALQLCLEQNLTITEEMAEKMTVAKDCADLSEESRRELLEQVASCCMRQGSYHLAAKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEVYVMAANYLQSLDWRRDPEIMKNIISFYTRGRAPELLAGFYDACAQVEVDEYQNYDKAHGALTEAYKCLAKAKARSPLDHEARLAQLQSRMTLVKRFMQARRMYAEDPEEALRQGQLLLEELGPDSTVRLGDVCGFLVEGHVQAGDLRTAYRYLEEMQKRLPSARLSYYVSQRALDAVHQGLGVPAMCHGNAEDKDMDEEVVEEVEGGP", "length": 1444, "header": "tr|F1RG13-1|F1RG13_PIG Isoform 1 of Intraflagellar transport protein 140 homolog OS=Sus scrofa OX=9823 GN=IFT140 PE=4 SV=4 CANONICAL=F1RG13-1" }, "locus": { "chromosome": "3", "start_pos": 40371663, "end_pos": 40313562, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008789.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008789.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008565.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008565.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5610787", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "resource": "Reactome", "description": "Hedgehog 'off' state" }, { "id": "R-SSC-5620924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "resource": "Reactome", "description": "Intraflagellar transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z0L4-1", "protein_name": "Intraflagellar transport protein 140 homolog", "gene_name": "IFT140", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVYVDHRTEAPDSVASPSLITWHSVHPLLAVASISTASGGCVDIYLEQGEHEPDAHIERSFQVTSLSWHPSRLILAAGWETGEVVILNKQDKELHTVPPNHNAKITILNWSSNGSRLVSGDRHGILFLWRMDQRGRVQGPPMLKHEYGKCLSHCIFRPPPPGEDFLQLAKAAVSGDEKALDMFNWRKAGTEAPLKMGLQEGLSFFITLTDGSVHYVNEKGKTSHVLSADNLVQKLLFMEKRDALVVVTENLLLSLHTITLEGDAKELMKVKLGGKTGNSADIILIDHSLIVTAMGETVLRFWDLDRGENYVLSPDVQFGFEAGECMNCVSYCSAKGLLAAGTNKGRVAMWRSVSVSSQSTGALEGKEKWKLQASTELEGNITQIKWGSRKNLLAVNSISSVVILSEQAMSCHYNQQVAAVQVSPSLFNVTFFSTGTTHNLHVDMTVNGVFTTKDAVVFWNGKQVTVFECSEDTLRNAGSFLCDSPVLSMHGENLYTVEPHRVQVRTWQGTVKQLLVFSEAEGNPCLLDVCGNFLAVGTDLAHFKIFDLSRREAKVHCNSKNFSELFPGLGNIASVKCNANGNKVSILVSKANGSTDSKICFYDVEMDKVTLFDFKAERGIGREKLSSGHGIDRSVVEYPDLHNHIPVCHFWDCSEPRLFVCETIPETGVRSPSQKNNQTESMLDVWVVSFFSTEEHGLLLQDSFPLPSLYEVLLGIDVPHYYFAKKPGETGKGQAESGSKVLQMASRQPMRDFIGLGDCDKATRDAMLNFSFYLTAGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKICLGNMGHARGARALREAEQEPEQEARVAVLAVQLGMLEDAERLYKACKRYDLLNKFYQATNQWQKAIETAEAHDRVHLRTTYYNYAKHLEAVGDHALALSHYEKSDTHRFEVPRMLSEDLQALENYVNKMKDKSLWKWWAQYLESQSDLESALKYYALAQDYFSLVRVHCFQGNIQKAAEIANETGNWAASYHLARQYESQDEIKQAVHFYTRAQAFNNAIRLCKENNLDDQLMNLALLSSPEDMIEAACYYEEKGEQMDRAVMLYHKAGHFSKALELAFATQQFGALQLIAEDLDEKSDPALLARCSGFFIEHAQYEKAVELLLTAKKYHEALQLCLKQNLTITEEMAERMTVSKDSKDLSEESRRELLEQIADCCMRQGNYHMATKKYTQAGNKLKAMKALLRSGDTEKIVFFAGVSRQREIYIMAANYLQSLDWRKDPEIMKNIISFYTKGRALDLLAGFYDVCAQVEIDEYQNYEKAQGALTEAYKCLSKAKTKSPLEQESKLAHLQSKMALIKRFIHARRVYSEDPKEAVRQCELLLAEQDLDNTIRQGDVLGFLVEHYLQVEEFHMAYQYLEQMRKRIPCTNLTYYIKQQTIEAVHRGAGIPISQALVPERSQHSSVENKDVEEEVADEVEGP", "length": 1453 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B860-1", "protein_name": "Intraflagellar transport protein 140 homolog", "gene_name": "IFT140", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALYFDHRIEAPDTVGSPSHIGWHPIYPFLAVASVSTTSGGSVDVYLEQGERVPDMHVERSFRVTCLCWHPTRLILAIGWESGEVVMFNKQDKEQHAVPATHTADIAILAWSPNGNCLVSGDRLGVLLLWRLDQRGRVQGMPLLRHEYGQPLTHCIFLLPPPGEDLVQLARAAVSGDEKALDMFNWKKSGFRSILKMGSQEGLSFFVSLTDGTVHHVDEKGRTAQVASTDSSIQTLFYLEQRGALVAVTDSLLLCLFTVTPEGTAEEVMKVKLSGKTGHRADIALIDGSLLVTAIGEAALRFWDLERGENYVLSPEEKFGFEKGENINCVSYCKVKGLLAAGTDKGRVAMWRKAPGLPNGRGAEGKDKWTLQAPTELEGNIMQIKWGSRKSLLAVNSISSVLILHEQAMSSHFHQQVAAVQVSPSLLSVSFLSTGVTHSLRTDMHVSGVFATKDAVAVWNGKQVVIFEPSGATLRSAGSFLCESPVLAMHEENVYTVEPNRVQVRTWQGTVKQLLPFSESEGNPCFLDICGTFLVVGTDLAHFKSFDLSRREAKVHCGCKSLAELVPGVGGLTSLRCSASGSKISLLLSKADNSPDSKICFYDVDMDTVTILDLKTGQIDQRETLSINGQETKKSQALEDERLTDLVPVSHFWDQSEPRLFVCEAVREVPGAPPQPADRNALAEADVVVLSFFVSEEHGFLLQDSFPRPPAFQTLLGIQVPHYYFTRKPGEANLEDQLDSGSQCIPQAVGRRPLRDFVGLEDCDKPTRDAMINFSFFLTIGDMDEAFRSIKLIKSQAVWENMARMCVKTQRLDVARVCLGHMGHARGARALREAQREPEPEARVAMLAVQLGMLEDAEQLYRRCGRYDLLNRLLQASGQWQRAIEVAERHDRMHLRTTYYNYARHLEASGDCSPALSYYEKSDTHRFEVPRMLVEDLQALGLYVNKMKDKTLWRWWAQYLESQAKMDAALHYYELAQDYFSLVRIHCFQGNIQRAAEIASETGNWAASYHLARQYESQNEVRQAVHFYTRAQAFNNAIRLCKEHGLDDQLMNLALLSSPEDMLEAARYYEERGEQMDRAVMLYHKAGHFSKALELAFATQQFAALQLVAEDLDEKSDPVLLARCSDFFLEHGQCEKAVELLLAAKKYQEALQLCLEQNLTITEEMAEKMTVPKDCKELSEEARRVLLEQIASCCMRQGSYHLATKKYTQAGDRLKAMRALLKSGDTEKIVFFAGVSRQKEIYVMAANYLQSLDWRKDPEVMKSIISFYTKGRALDLLAGFYDACAQVEVDEYQNYDKAHGALTEAYKCLSKAKARSPLDQEARLAQLQSRMTLVKRFMQARRTYTEDPKGSVRQCQLLLEEPHLDSGVRVGDVYGFLVERHVHSGDLQTAYRYLEEMRQRLPSANVSYYVSQHTVDAVHQGLGLPLTCAAPKRAQHSSMEEHKEADEEVAEEVESGP", "length": 1457 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E9PY46-1", "protein_name": "Intraflagellar transport protein 140 homolog", "gene_name": "Ift140", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDTHIERSFQATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKALTHCIFRLPPPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQTLFYIERREALVVVTENLLLSLYVVTPEGEAEEVMKVKLSGKTGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFGFEKGESINCVCFCKAKGLLAAGTNKGRVAMWKKVPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTESVSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTFLCETSVLAMHEESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCKNLAQLVPDVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQTLPFNEPPTNETRSFMDKSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPRVEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQSLLGMEVPHYYFTKKPGEADKEDRVDSGYYHIPQMVAKRPLRDFVGLEDCDKSTRDAMLNFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEQEPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFYQASDQWQKAVEVAELHDRVHLRTTYYNYAKHLEASADCGQALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWRWWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIEHRQFEKAVELLLAAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKDMSEESRRELLEQIANCCMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKEPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKTKNPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESLRQCELLLEEPDLDSTIRVGDVYGFLVEHHVQMEEYQMAYKYLEEMRKRLPSANMSYYVDQRTVDTVHQGLGLLPPSRIMPERVRHNSMEDHKEVYEEVIEEVDNDP", "length": 1464 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LY69-1", "protein_name": "Intraflagellar transport protein 140 homolog", "gene_name": "Ift140", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALYFDHRIKAPDASSSPSHITWHPTHPFLAVASVSPSSGGNVDIYLEQGEPVPDTHIERSFQATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKPLTHCIFRLPPPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQTLFYIEKREALVVVTQNLLLSLYVVNPEGEAEEVMKVKLSGKTGRRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFGFEKGENINSVCYCKAKGLLAAGTHKGRVAMWKKVPVSPSGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSTSDSVSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGSTHSLRTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTFLCETSVLAMHEESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCKNLAQMIPDVGSITSLRCNANGNKISILLSKVDNSPDSKIYVYDVEMDTVNVFNFKTGHIGQIQTLPFNEPPTNEAHFFMNESLASYVPVNHFWDQSEPRLFVCEALQEAPGAQPQAIDKQPHMEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQSLLGLEVPHYYFTKKPGEADKEDKMDSGHYHIPQMVAKKPLRDFVGLEDCDKPTRDAMLNFSFFVTIGDMDEAFKSIKLIKSETVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEREPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFYQASDQWQKAVEVAELHDRVHLRTTYYNYAKHLEASADCGLALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWRWWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIEHRQFEKAVELLLAAKKYHEALQLCLEQNMTITEEMAEKMTVSKDSKDLSEESRRELLEQIANCCMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKEPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKAKNPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESVRQCELLLEEPDLDSTIRVGDIYGFLVEHHVQMEEYQMAYKYLEEMRKRLPSANMSYYVDQRTVDTVHQGLGLPPSRIMPERVRHNSMEDHKEVYEEVIEEVDNDP", "length": 1463 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HBX9-1", "protein_name": "Intraflagellar transport protein 140 homolog", "gene_name": "Ift140", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALYFDHRIKAPDVSRSPSHITWHPTHPFLAVASVSPSCGGNVDIYLEQGEPVPDTHIERSSRVTSLCWHPTRLILAVGWETGEVIMFNKQDKEQHTVPLPHTTDIVILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKSLTHCIFRLPPPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQMLFYIEKREALVVVTQNLLLSLYVVTPEGEAEEVMKVKLSGKTGRRADITLIEGTLLVTAVGEPVLRFWDLERGENYILSPQEKFGFEKGENINCVCFCKTKGLLAAGTNKGRVALWKKVPNSLSGRGVEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSADSVSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGSTHSLRTDMHISGVFATKDAVAVWNGKQVAVFEPSGSTLRNAGTFLCETSVLAMHEESIYTVEPNRIQVRTWQGTVKQLLLFSESEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSSKNLAHMIPDVGSIMSLRCNANGNKISILLNKVDNSPDSKIYIYDVEMDTVNVFNFKTGQIGQTQTLPFNEPEMNESHIFMHERLASYIPVNHFWDQSEPRLFVCEALQEASGAQPQGVDKQPHVEDTCHKEDVLILSFFASEEHGFLLHDCFPRPPIYQSLLGMEVPHYYFTKKPGEAEKEDRVDSGHYHIPQMVAKRPLRDFVGLEDCDKPTREAMLNFSFFVTIGDMDEAFKSIKLIKSETVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEREPELEARVAMLAIQLGMLEEAEELYKKCKRYDLLNKLYQASDQWQKAVEVAEVHDRVHLRTTYYNYAKHLEASADCGLALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWRWWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLSRCSDFCIEHRQFEKAVELLLAAKKYHEALQLCLEQNMTITEEMAEKMTVSKDSKDLSEESRRELLEQIANCCMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKEPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKAKSPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESIRQCELLLEEPDLDSTIRIGDVYGFLVEHHVQMEEYQMAFKYLEEMRKRIPSANISYYVDQRTVDTVHQGLGLPPSRILPERVRHNSMEDHKDVYEEVMEEVENDP", "length": 1462 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7KTZ4-1", "protein_name": "Reduced mechanoreceptor potential A, isoform B", "gene_name": "rempA", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSQATALCWHPEKALLASGWEHGDIHVWFAGHREFASVNAPHKAAIVLLQFSEQGGRMVTADAMGLVTGWRCDGQYQFLTMFSHDLREVLLLICFRLTVESEVREEMANLAKAAVAGDENALDTLTNWRPRTAARSMTHSGVRDNHCFYACTQGGVVYYINQGGACVEVMKCGSLPPIVQMLWHPRKDAVICLMEDLTVTLFLVESTGILTELDRVKMSGRGGGRQGGIAWSGNSLAIITGDFFVRIWDIERSDNYLLKMDLPSGNQPGSSMTTLSNGTMSSSNQFFSHDSSESSGVLRKTPKYGQLNGEMFTCLAYSSTGQTLCAGTSQGNVYTWKRSGSRLVGAPEDAWQLTNISSVRGAIRSCEWGYNELAKPCMLVNCLSNVFMLKEQPLLAVHTRELWAVQRSAKSVQLTHCSGREAIVQSEFAVTAMALSELSLVMSNGRSISSYSLQKVEKSLDEFEEILQTVEGTTPTTESTTTPLSLKLLQTFAAECLALNLCNQNIFCLGSSDVFVYSVGGVVLHRIQASDIEGKIIGMDLSGCYLSVFTMNGYVKAYDVSRHDPKLLFPSKSGHDIFDDFGEFILVKCNSSGSHLAMVIASSNFTPISTLFCWDFERSNLLEYGLLEPETNAKKESSTSLPVRIFWDAEEPRLLATEVKSMIQKTLPQKNSLQPSHFVQSKVVLLFYSEKGCLNVLETQSMSPGCQLLNLCVPNVIRLKINTMEEQPLQDFVDLQQCNPVTRKQVLNFSLYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVCMGHLEQARSVRALRQAIEDDDLETEAKVAVLAIELGMIEEAKDLYRRCKRFDLLNKLLQSIGHLDEAVELAEAEDRIHLKHTYYQKAQELRERGDIKGALEYFEKTQNPAQNITQLLLENPGAMKRYIQTTSDPKLLKWWGQYIESSGDMDAALAVYHKAEDWFSQVKILCYLGKISKADAIARQSGDRAACYHLARHYENVGKFQEAIMFFTRAQTFSNAIRICKENDFQEELWTVASSSRQRDKAIAAAYFEECGNFKHAVELYHRAGMLHKALEMAFESQQPEILEIIASDLAPDSDAELINRCADFFCSIEQFQKAVHLLAKTRHLERALGICSEKGVPVTEELSEMLTPEKGEFEEATRVHILVQLGEFLQQQGDYHSATKKFTQAGDKIRAMKSLLKSGNTDKIIFFANMSRQREVYIMAANYLQALDWQSDPQVLKHIVTFYTKGQAFDSLANFYAICAQIEIEEFQDYGKALTAMQEASKCLEKLSHAQHVYNNLQRTVADVKAILEIQQALREGDHQLVIGSCRSMLIKPELPPIRHAHILAMLIRALVYVKDYSEAGRALKELTVKDSTWSASGLLDRSIVHKIAQECHLEFDLIWNAGRQVTASTSGTAATGMSSTSGMTTTDDDDADDEEITEELH", "length": 1503 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q96RY7-1", "protein_name": "Intraflagellar transport protein 140 homolog", "gene_name": "IFT140", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALYYDHQIEAPDAAGSPSFISWHPVHPFLAVAYISTTSTGSVDIYLEQGECVPDTHVERPFRVASLCWHPTRLVLAVGWETGEVTVFNKQDKEQHTMPLTHTADITVLRWSPSGNCLLSGDRLGVLLLWRLDQRGRVQGTPLLKHEYGKHLTHCIFRLPPPGEDLVQLAKAAVSGDEKALDMFNWKKSSSGSLLKMGSHEGLLFFVSLMDGTVHYVDEKGKTTQVVSADSTIQMLFYMEKREALVVVTENLRLSLYTVPPEGKAEEVMKVKLSGKTGRRADIALIEGSLLVMAVGEAALRFWDIERGENYILSPDEKFGFEKGENMNCVCYCKVKGLLAAGTDRGRVAMWRKVPDFLGSPGAEGKDRWALQTPTELQGNITQIQWGSRKNLLAVNSVISVAILSERAMSSHFHQQVAAMQVSPSLLNVCFLSTGVAHSLRTDMHISGVFATKDAVAVWNGRQVAIFELSGAAIRSAGTFLCETPVLAMHEENVYTVESNRVQVRTWQGTVKQLLLFSETEGNPCFLDICGNFLVVGTDLAHFKSFDLSRREAKAHCSCRSLAELVPGVGGIASLRCSSSGSTISILPSKADNSPDSKICFYDVEMDTVTVFDFKTGQIDRRETLSFNEQETNKSHLFVDEGLKNYVPVNHFWDQSEPRLFVCEAVQETPRSQPQSANGQPQDGRAGPAADVLILSFFISEEHGFLLHESFPRPATSHSLLGMEVPYYYFTRKPEEADREDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAEQEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRSTYHRYAGHLEASADCSRALSYYEKSDTHRFEVPRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYELARDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGVQMDRAVMLYHKAGHFSKALELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYERAVELLLAARKYQEALQLCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCMRQGSYHLATKKYTQAGNKLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKEPEIMKNIIGFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAKSPLDQETRLAQLQSRMALVKRFIQARRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYGFLVEHYVRKEEYQTAYRFLEEMRRRLPLANMSYYVSPQAVDAVHRGLGLPLPRTVPEQVRHNSMEDARELDEEVVEEADDDP", "length": 1462 }, "evidence": [ { "id": "F1RG13", "url": "https://omabrowser.org/oma/group/F1RG13/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" }, { "name": "intraciliary transport particle A", "id": "GO:0030991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030991", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" }, { "name": "photoreceptor connecting cilium", "id": "GO:0032391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032391", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" }, { "name": "photoreceptor outer segment", "id": "GO:0001750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001750", "evidence": [ { "database": "UniProtKB", "id": "F1RG13", "url": "https://www.uniprot.org/uniprotkb/F1RG13" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cilium 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13382", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942541", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942541", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RG39", "url": "https://www.uniprot.org/uniprotkb/F1RG39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG39-1", "url": "https://www.uniprot.org/uniprotkb/F1RG39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSPGVGGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPAAKNRPCQPPPPTLAVPPARAALAGGLCPPAGLPLGGPASAPVPGPPAERPPLATDEKILNGLFWYFSACEKCVLAQVCKAWRRVLYQPKFWAGLTPVLHAKELYTVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYALSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLAMRSLRLLSLAGCPLLTATGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVVE", "length": 477, "header": "tr|F1RG39-1|F1RG39_PIG Isoform 1 of F-box/LRR-repeat protein 16 OS=Sus scrofa OX=9823 GN=FBXL16 PE=4 SV=4 CANONICAL=F1RG39-1" }, "isoforms": [ { "isoform_ac": "F1RG39-1", "url": "https://www.uniprot.org/uniprotkb/F1RG39/entry", "sequence": { "sequence": "MSSPGVGGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPAAKNRPCQPPPPTLAVPPARAALAGGLCPPAGLPLGGPASAPVPGPPAERPPLATDEKILNGLFWYFSACEKCVLAQVCKAWRRVLYQPKFWAGLTPVLHAKELYTVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYALSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLAMRSLRLLSLAGCPLLTATGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVVE", "length": 477, "header": "tr|F1RG39-1|F1RG39_PIG Isoform 1 of F-box/LRR-repeat protein 16 OS=Sus scrofa OX=9823 GN=FBXL16 PE=4 SV=4 CANONICAL=F1RG39-1" }, "locus": { "chromosome": "3", "start_pos": 41082052, "end_pos": 41078508, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008774.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008774.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008550.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008550.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 459, "start_aa": "Thr", "end_pos": 459, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr459", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG39", "url": "https://www.uniprot.org/uniprotkb/F1RG39" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511074", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511074", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2RT62-1", "protein_name": "F-box/LRR-repeat protein 16", "gene_name": "Fbxl16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPAAKNRPCQPPPPPTLPPPSLATPLSRVALAGGPCPPASGPASGPVSGPPVERPPLATDEKILNGLFWYFSACEKCILAQVCKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYSLSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLAMRNLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE", "length": 479 }, "evidence": [ { "id": "F1RG39", "url": "https://omabrowser.org/oma/group/F1RG39/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITN3-1", "protein_name": "F-box/LRR-repeat protein 16", "gene_name": "fbxl16", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKERLPMLNMSTPSDLKSPCMTRNGMVKLPPQPNRLGSASITKGTPAAKNRLCQSSSVPTILPPPSLPYHLDPLPTAASLLGPDLDTSPVTAIKPPLRQFPKPLLERQLILDEKVLNRLLWYFTTAEKCILAQVCKTWRKVLYQPKFWEGVTPILHAKELYTILPNGEKEFVSLQAFALRGFQAFCLVGVSDLDICEFIDNYPLSKKGVKSVSLKRSTITDAGLEVMLEQMQGLMHLELSGCNDFTEAGLWSSLNARLTSLSVSDCINVADDAIAAISQLLPNLSELSLQAYHVTDTAMAYFTAKQGYTTHTLRLNSCWEITNHGVVNMVHSLPNLTSLSLSGCSKITDDGVELVAENLRKLRSLDLSWCPRITDMALEYIACDLHKLEELVLDRCVRITDTGLGYLSTMSTLRSLYLRWCCQVQDFGLQHLYGMRSLRLLSLAGCPLLTTTGLSGLIQLQDLEELELTNCPGATAELFKYYSQHLPRCMVIE", "length": 493 }, "evidence": [ { "id": "F1RG39", "url": "https://omabrowser.org/oma/group/F1RG39/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5MJ12-1", "protein_name": "F-box/LRR-repeat protein 16", "gene_name": "Fbxl16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSPGIDGDPKPSCLPRNGLVKLPGQPNGLGAASITKGTPAAKNRPCQPPPPPTLPPPSLATPLSRVALAGGPCPPASGPASGPVPGPPVERPPLATDEKILNGLFWYFSACEKCILAQVCKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYSLSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLAMRSLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE", "length": 479 }, "evidence": [ { "id": "F1RG39", "url": "https://omabrowser.org/oma/group/F1RG39/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N461-1", "protein_name": "F-box/LRR-repeat protein 16", "gene_name": "FBXL16", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSPGIDGDPKPPCLPRNGLVKLPGQPNGLGAASITKGTPATKNRPCQPPPPPTLPPPSLAAPLSRAALAGGPCTPAGGPASALAPGHPAERPPLATDEKILNGLFWYFSACEKCVLAQVCKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNLQGFAARGFEGFCLVGVSDLDICEFIDNYALSKKGVKAMSLKRSTITDAGLEVMLEQMQGVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQAYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTALSLSGCSKVTDDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSYLSTMSSLRSLYLRWCCQVQDFGLKHLLALGSLRLLSLAGCPLLTTTGLSGLVQLQELEELELTNCPGATPELFKYFSQHLPRCLVIE", "length": 479 }, "evidence": [ { "id": "F1RG39", "url": "https://omabrowser.org/oma/group/F1RG39/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VTL8-1", "protein_name": "F-box/LRR-repeat protein 16", "gene_name": "Dmel\\CG32085", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSSISAQGVVERASAELSKRINGLGLRSKHHHSSTSSGAGGAGDAASPAGATPTPAAPSGKTSVMERVTNALCGGGNSNSNSGSNSSNSNTSSASATAATSPASNANPPQTPDKPSRGSSPSPGGITMPGGQSQVQNSTHHLLQQQQQQQQHMQLQQSQQQHLQLQASTLINSNHHVMVGPAPPTGMPLGAPPTPTVKSIAKQMNITIPGGGVNPGSPTFSTMGMVAAQKAAASAGGTPLQLRKQLPNPHLHHPYGSMGINAASPLIMQHQLHPPPIHSIEQLMLDDRFLSRFFQYFSPYERRILAQVCIKWRDTLYRSPRYWSGLLPTLQCRELRQMPGCDRGKLYNSLIRRGFHALGLVGASDEDALDVVHSFPLASKHVHSLSLRCSSISDRGLETLLDHLQSLFELELAGCNEVTEAGLWACLTPRIVSLSLADCINIADEAVGAVAQLLPSLYEFSLQAYHVTDAALGYFSPKQSHSLSILRLQSCWELTNHGIVNIVHSLPHLTVLSLSGCSKLTDDGVELIAENLQKLRALDLSWCPRITDASLEYIACDLNQLEELTLDRCVHITDIGVGYISTMLSLTALFLRWCSQVRDFGLQHLCSMRNLQVLSLAGCPLLTSSGLSSLIQLRHLQELELTNCPGASHELFDYLKEHLPRCLIIE", "length": 666 }, "evidence": [ { "id": "F1RG39", "url": "https://omabrowser.org/oma/group/F1RG39/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RG39", "url": "https://www.uniprot.org/uniprotkb/F1RG39" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "F1RG39", "url": "https://www.uniprot.org/uniprotkb/F1RG39" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1RG39", "url": "https://www.uniprot.org/uniprotkb/F1RG39" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": 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"MSTALAPGADSPKTEEARTSPDPGPGTPTGTLTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARVAAVTPGQVTSRHGAAAATSASTGQAPEDPSGPGTGPPGTCEAQVAVVMVTPAPEPTENSQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLADDVSSMGSDSEINGLALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSHWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFGLLRRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTNLPVTEALIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHEERRWQQPPLGPSSSLLSLPGLKSRGSRAPGGAPSPPLPARRASAGPAPGPVVTAEGLRPSLPSPTGNSTPLAPSKEARRQEKERQKQEKEREKERQKQEKEREKQEKERQKQEKERQKQEKERQKQEKKAQGRKLSLRRKADEPPAPQDGGDRPSASEARQDAYF", "length": 691, "header": "tr|F1RG61-1|F1RG61_PIG Isoform 1 of TBC1 domain family member 10B OS=Sus scrofa OX=9823 GN=TBC1D10B PE=1 SV=4 CANONICAL=F1RG61-1" }, "isoforms": [ { "isoform_ac": "F1RG61-1", "url": "https://www.uniprot.org/uniprotkb/F1RG61/entry", "sequence": { "sequence": "MSTALAPGADSPKTEEARTSPDPGPGTPTGTLTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARVAAVTPGQVTSRHGAAAATSASTGQAPEDPSGPGTGPPGTCEAQVAVVMVTPAPEPTENSQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLADDVSSMGSDSEINGLALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSHWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFGLLRRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTNLPVTEALIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHEERRWQQPPLGPSSSLLSLPGLKSRGSRAPGGAPSPPLPARRASAGPAPGPVVTAEGLRPSLPSPTGNSTPLAPSKEARRQEKERQKQEKEREKERQKQEKEREKQEKERQKQEKERQKQEKERQKQEKKAQGRKLSLRRKADEPPAPQDGGDRPSASEARQDAYF", "length": 691, "header": "tr|F1RG61-1|F1RG61_PIG Isoform 1 of TBC1 domain family member 10B OS=Sus scrofa OX=9823 GN=TBC1D10B PE=1 SV=4 CANONICAL=F1RG61-1" }, "locus": { "chromosome": "3", "start_pos": 17955183, "end_pos": 17945312, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008546.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008546.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008327.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008327.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 116, "start_aa": "Thr", "end_pos": 116, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr116", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 70, "start_aa": "Thr", "end_pos": 70, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr70", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG61", "url": "https://www.uniprot.org/uniprotkb/F1RG61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZSY8-1", "protein_name": "TBC1 domain family, member 10b", "gene_name": "Tbc1d10b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METGPAPLVAPPRRHGASAAPSPPPRGSRAGSVLVVAPGPPVTTATSAPVDLVVPGEARPAWVPGSLQTSASTPTTATGSTVELTLEASPEAAKTQEFPAPAAEAGAETSVALVLGTDTPKTEEARASPVPGPGTPTRTPSRTASGALTAKPPLAPKPGTTVASGVTARGGAGQVAGGHGAATSASAGPVPEDPSGPVTGPPGTCEASAPVARVTVTPAPETTENFQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLTDDVSSVGSDSEINGLALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSNWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFALLRRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTTLPVTEALIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHEERRRQQPPLGPSSSLLSLPSLKSRGSRAVGGAPSPPPPVRRASAGPVPGAVVIAEGLHPSLPSPTGNSTPLGTSKEIRRQEKERQKQEKEREKERQRQEKEREKQEKERQKWEKEQEKEQQKQEKERQKLEKKGQGRKLSLRRKADGPPAPQDGGDRSAAEARQDAYF", "length": 795 }, "evidence": [ { "id": "F1RG61", "url": "https://omabrowser.org/oma/group/F1RG61/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MJZ7-1", "protein_name": "TBC1 domain family member 10B", "gene_name": "TBC1D10B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METGPAPLVAPPRRHGAPAAPSPPPRGSRAGPVLVVAPGPPVTTATSAPVTLVAPGEARPAWVPGLTQTSDSVPGPTVTASTEVGLTLEASPDAPRAQVSGPEPLVPEAVAGAEMSVPQAPGADPPKTEEAITSPDPGPGTLTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARIAAVTAGQVTSGHGAAAATSASTGQAPEDPSGPGTGPPGTCEAQVAVVTVTPAPEPAENSQDLGSMSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLADDVSSMGSDSEINGLALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSHWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFALLRRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTNLQVTEALIERENAAQLKKWLETRGELQYRPSRRLHGSRAIHEERRRQLPPLGPSSSLLSLPGLKSRGSRAGGGVPSPPPPVRRASAGPAPGPVVTAEGLRPSLPSPTGNSAPLAPSSKEARRQEKERQKQEKEREKERQKQEKEREKQEKERQKQEKEQQKQEKERQKQEKKAQGRKLSLRRKADGPPTPQDGGDRSSASEARQDAYF", "length": 802 }, "evidence": [ { "id": "F1RG61", "url": "https://omabrowser.org/oma/group/F1RG61/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4KMP7-1", "protein_name": "TBC1 domain family member 10B", "gene_name": "TBC1D10B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGTAPLVAPPRRHGAPAAPSPPPRGSRAGPVVVVAPGPPVTTATSAPVTLVAPGEARPAWVPGSAETSAPAPAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLPSGPESPEPAAVAGVETSRALAAGADSPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARSASGQVTGGHGAAAATSASAGQAPEDPSGPGTGPSGTCEAPVAVVTVTPAPEPAENSQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLADDVSSMGSDSEINGLALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLDMFSNWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFALLRRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTNLPVTEALIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHEERRRQQPPLGPSSSLLSLPGLKSRGSRAAGGAPSPPPPVRRASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKADGPPGPHDGGDRPSAEARQDAYF", "length": 808 }, "evidence": [ { "id": "F1RG61", "url": "https://omabrowser.org/oma/group/F1RG61/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BHL3-1", "protein_name": "TBC1 domain family member 10B", "gene_name": "Tbc1d10b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METGPAPLVAPPRRHGAPAAPSPPPRGSRAGSHLVVEPGPPVTTATSAPVELVAPGEARPACVPGSSQTSASTPTTATSSTVVMLTLEASPEAAKTQEFPAPAAETGAETSVALALGTDTQKTEEVRASPVPGPGTPTRTPSRMAPGALTAKPPLAPKPGTTVASGVTARGGVGQVAGGHEAATSASAGSVPEDPSGPVTGPPGTCEAPAPTPVAVVTVTPAPEPVENFQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTLESLPDDVSSMGSDSEINGMALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLEMFSNWDKWLSRRFQKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAAGDPKWLDVIEKDLHRQFPFHEMFAARGGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLDGEIFFALLRRVSPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLLRHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTNLPVTEAWIERENAAQLKKWRETRGELQYRPSRRLHGSRAIHEERRRQQPPLGPSSSLLSLPSLKSRGSRAVGGAPSPPPPVRRASAGPVPGAVVIAEGLHPSLPSPTGNSTPLGTSKEIRRQEKERQKQEKDREKERQRQEKERERQEKERQKWEKEQEKEQQKQEKERQKLEKKGQGRKLSLRRRADGPPASHDGGDRSAAEARQDAYF", "length": 798 }, "evidence": [ { "id": "F1RG61", "url": "https://omabrowser.org/oma/group/F1RG61/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1RG61", "url": "https://www.uniprot.org/uniprotkb/F1RG61" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RG61", "url": "https://www.uniprot.org/uniprotkb/F1RG61" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RG61", "url": "https://www.uniprot.org/uniprotkb/F1RG61" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "F1RG61", "url": "https://www.uniprot.org/uniprotkb/F1RG61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RG61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG61" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 242, "end_pos": 430, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 70, 116 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 593, "end_pos": 595 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RG81-1", "uniprot_ac": "F1RG81", "uniprot_id": "F1RG81_PIG", "mass": { "chemical_mass": 38644.0, "monoisotopic_mass": 38644.0 }, "refseq": {}, "gene_names": [ { "name": "ASPHD2", "type": "recommended", "evidence": [ { "id": "F1RG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG81" } ] } ], "protein_names": [ { "name": "Aspartate beta-hydroxylase domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "F1RG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG81/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May function as 2-oxoglutarate-dependent dioxygenase.", "evidence": [ { "database": "UniProtKB", "id": "F1RG81", "url": "https://www.uniprot.org/uniprotkb/F1RG81#function" }, { "database": "UniProtKB", "id": "ARBA00059268", "url": "https://www.uniprot.org/uniprotkb/ARBA00059268#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RG81", "url": "https://www.uniprot.org/uniprotkb/F1RG81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASPHD2", "url": "https://www.uniprot.org/uniprotkb/F1RG81", "locus": { "chromosome": "14", "start_pos": 44043224, "end_pos": 44034247, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009959", "url": "https://www.ensembl.org/id/ENSSSCG00000009959" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009959", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009959", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007803", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007803", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HIPSKDC", "url": "https://omabrowser.org/oma/group/HIPSKDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46332", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46332", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46332:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46332:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RG81", "url": "https://www.uniprot.org/uniprotkb/F1RG81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG81-1", "url": "https://www.uniprot.org/uniprotkb/F1RG81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLEWLVAWGWSLDGLRDCIATGIQSVRDCDTTAVVTVACLLVLFVWYCYHVGREQPRPYVSVNALMQGPDANGLQNGFVYCQSPECVRCSHNGGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLNSRPSIQKPEVFFLPDLPTTPYFSRDAQKHDVELLERNFQTILCEFETLYKAFSNCSLPQGWKMNSTPSGEWVTFYLVNQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPGGCELVVGGEPQCWAEGRCLLFDDSFLHTAFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 343, "header": "tr|F1RG81-1|F1RG81_PIG Isoform 1 of Aspartate beta-hydroxylase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ASPHD2 PE=3 SV=3 CANONICAL=F1RG81-1" }, "isoforms": [ { "isoform_ac": "F1RG81-1", "url": "https://www.uniprot.org/uniprotkb/F1RG81/entry", "sequence": { "sequence": "MSLEWLVAWGWSLDGLRDCIATGIQSVRDCDTTAVVTVACLLVLFVWYCYHVGREQPRPYVSVNALMQGPDANGLQNGFVYCQSPECVRCSHNGGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLNSRPSIQKPEVFFLPDLPTTPYFSRDAQKHDVELLERNFQTILCEFETLYKAFSNCSLPQGWKMNSTPSGEWVTFYLVNQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPGGCELVVGGEPQCWAEGRCLLFDDSFLHTAFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 343, "header": "tr|F1RG81-1|F1RG81_PIG Isoform 1 of Aspartate beta-hydroxylase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ASPHD2 PE=3 SV=3 CANONICAL=F1RG81-1" }, "locus": { "chromosome": "14", "start_pos": 44041550, "end_pos": 44034480, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045834.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045834.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052380.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052380.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG81", "url": "https://www.uniprot.org/uniprotkb/F1RG81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BAL9-1", "protein_name": "Aspartate beta-hydroxylase domain-containing protein 2", "gene_name": "ASPHD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLEWLVAWGWSLDGLRDCIAAGIQSVRDCDTTAAVSVACLLALFVWYCYHVGREQPRAYASVNALMQGPDAAGLQNGFVYCQSAECVRCSHSEGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLSSRPSIQKPEVFFLPDLPTAPYFSREAQKHDVELLERNFQTILCEFETLYKAFSNCSLPQGWKMNSTPSGEWVTFYLVNQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACLSVLSPGTVITEHYGPTNIRVRCHLGLKTPSGCELVVGGEPQCWAEGRCLLFDDSFLHTAFHEGPAEDGPRAVFMVDLWHPHVAAAERQALDFIFAPGR", "length": 343 }, "evidence": [ { "id": "F1RG81", "url": "https://omabrowser.org/oma/group/F1RG81/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BSD3-1", "protein_name": "Aspartate beta-hydroxylase domain-containing protein 2", "gene_name": "ASPHD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLVWLPDWSCSLDGLRDFIAAGIQSFRDCDGGALLAVGCLLLLFVWYCYHVGREQPRAYPAVNALMQGAEANGVQNGFVYCHAPECARCSPHDGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLNSRPSIQKPEVFFLPDLPTAPYFSRDAQKHDVEVLERNFQTILCEFESLYKAFSNCSLPQGWKMNSTPSGEWFTFYLVNQGMCVPRNCRRCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVIAEHYGPTNIRIRCHLGLKTPSNCELVVGGEPQCWAEGRCLLFDDSFLHTAFHEGPPEEGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 343 }, "evidence": [ { "id": "F1RG81", "url": "https://omabrowser.org/oma/group/F1RG81/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HTB6-1", "protein_name": "Aspartate beta-hydroxylase domain-containing protein 2", "gene_name": "Asphd2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWLEWLVAWSWSLDGLRDCIATGIQSVRDCDSTAVVTVACLLVMFVWYCYHVGREQPRPHVSVNSLLQGVDASVLQNGSMYCQSPECVRCMHHDGLNQKLYHNLQEYAKRYSWSGMGRIHKAIREQGRYLSSQPSIQKPEVFFLPDLPTTPYFSRDAQKHDVELLERNFQAILCEFETLYKAFSNCSLPQGWKVNSTPSGEWFTFDFVNQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPSGCELVVGGEPQCWAEGRCLLFDDSFLHTAFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 343 }, "evidence": [ { "id": "F1RG81", "url": "https://omabrowser.org/oma/group/F1RG81/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5HZW3-1", "protein_name": "Aspartate beta-hydroxylase domain-containing protein 2", "gene_name": "Asphd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWLEWLVAWSWSLDGLRDCIATGIQSVRDCDGTAVITVACLLVLFVWYCYHVGREQPRPHVSVNSLLQGVDANGLQNGSMYCQSPECVRCTHHDGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLSSQPSIQKPEVFFLPDLPTTPYFPRDAQKHDVELLERNFQAILCEFEALYKAFSNCSLPQGWKVNSTPSGEWFTFDFVSQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPNGCELVVGGEPQCWAEGRCLLFDDSFLHTSFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 343 }, "evidence": [ { "id": "F1RG81", "url": "https://omabrowser.org/oma/group/F1RG81/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ICH7-1", "protein_name": "Aspartate beta-hydroxylase domain-containing protein 2", "gene_name": "ASPHD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVWAPLGPPRTDCLTLLHTPSKDSPKMSLEWLVAWSWSLDGLRDCIATGIQSVRDCDTTAVITVACLLVLFVWYCYHVGREQPRPYVSVNSLMQAADANGLQNGYVYCQSPECVRCTHNEGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLNSRPSIQKPEVFFLPDLPTTPYFSRDAQKHDVEVLERNFQTILCEFETLYKAFSNCSLPQGWKMNSTPSGEWFTFYLVNQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPNGCELVVGGEPQCWAEGRCLLFDDSFLHAAFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 369 }, "evidence": [ { "id": "F1RG81", "url": "https://omabrowser.org/oma/group/F1RG81/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80VP9-1", "protein_name": "Aspartate beta-hydroxylase domain-containing protein 2", "gene_name": "Asphd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWLEWLVAWSWSLDGLRDCIATGIQSVRDCDGTAVITVACLLILFVWYCYHVGREQPRPHVSVNSLLQGVDANGLQNGSMYCQSPECARCTHHEGLNQKLYHNLQEYAKRYSWSGMGRIHKGIREQGRYLSSQPSIQKPEVFFLPDLPTTPYFSRDAQKHDVELLERNFQAILCEFETLYKAFSNCSLPQGWKVNSTPSGEWFTFDFVSQGVCVPRNCRKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPNGCELVVGGEPQCWAEGRCLLFDDSFLHTAFHEGSAEDGPRVVFMVDLWHPNVAAAERQALDFIFAPGR", "length": 343 }, "evidence": [ { "id": "F1RG81", "url": "https://omabrowser.org/oma/group/F1RG81/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RG81", "url": "https://www.uniprot.org/uniprotkb/F1RG81" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "F1RG81", "url": "https://www.uniprot.org/uniprotkb/F1RG81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG81" }, { "id": "PF05118", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aspartyl/asparaginy/proline hydroxylase", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 325, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 195, "end_pos": 197 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RG95-1", "uniprot_ac": "F1RG95", "uniprot_id": "F1RG95_PIG", "mass": { "chemical_mass": 38802.0, "monoisotopic_mass": 38802.0 }, "refseq": {}, "gene_names": [ { "name": "CFAP119", "type": "recommended", "evidence": [ { "id": "F1RG95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG95" } ] } ], "protein_names": [ { "name": "Cilia and flagella associated protein 119", "type": "synonym", "evidence": [ { "id": "F1RG95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RG95/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RG95", "url": "https://www.uniprot.org/uniprotkb/F1RG95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP119", "url": "https://www.uniprot.org/uniprotkb/F1RG95", "locus": { "chromosome": "3", "start_pos": 17640726, "end_pos": 17636393, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007778", "url": "https://www.ensembl.org/id/ENSSSCG00000007778" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007778", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007778", "database": "Bgee", "categories": [ "Gene Expression" ] }, { 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RG95-1", "url": "https://www.uniprot.org/uniprotkb/F1RG95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRRKSSQFRRLKRRSELDQHSELRREHEKDHEKDLSSLDESAKRMGTGVRTESGTVASVDANEDPAANLFPPPLPQPRICIWKYLDIHSMQRLEKTTNVEEMREVLAELLGLSCPEQNLRDAITLDLFSHILIFCRHQGFSLEQTSTACALLQDLHKACIATPLGNVEECYRYFTSVLFCHGVRRPPFSINLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLTYMGLQPPRLWPEDETEKEEGEEVEEPAASPQEEEPEAGVQPEQEPSQLSILRTYIKTQVNKELEQLQKLVEERLKASEERLSSKLTALERPLQPPPGKGKNKTK", "length": 336, "header": "tr|F1RG95-1|F1RG95_PIG Isoform 1 of Cilia and flagella associated protein 119 OS=Sus scrofa OX=9823 GN=CFAP119 PE=4 SV=3 CANONICAL=F1RG95-1" }, "isoforms": [ { "isoform_ac": "F1RG95-1", "url": "https://www.uniprot.org/uniprotkb/F1RG95/entry", "sequence": { "sequence": 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reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RG95", "url": "https://www.uniprot.org/uniprotkb/F1RG95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061I8E0-1", "protein_name": "Coiled-coil domain-containing protein 189 isoform X1", "gene_name": 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"MLNRKTSHFLGMRVQSELEHLSELRREAGKDRSSVHGSAARTRASVRTQWTTAAAAKADEDPGANLFPPPLPRPRICMWKYLDVHSMHQLEKTTNAEMREVLAELLELGCPEQSLRDAITLDLFCHALIFCRQQGFSLEQTSAACALLQDLHKACIATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALEDYVVNTYFRHFKLYKYVFTPQVRLDLSLTYMGLQPPKLWPESETEKEESKEMEEQAVTPQKEELETVAPPEPEPSHIHVLRAYIKTQVNKELEQLQGLVEERLKASEERLSSKLTALERPFQLPPGKGKSKTK", "length": 331 }, "evidence": [ { "id": "F1RG95", "url": "https://omabrowser.org/oma/group/F1RG95/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1MZI0-1", "protein_name": "Cilia and flagella associated protein 119", "gene_name": "CFAP119", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF90", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF90", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RGD4", "url": "https://www.uniprot.org/uniprotkb/F1RGD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TPGGKRQVFFLVILLFWWEAGSEAIRYSMPEERESGSFVANLAKDLGLGVGQLATRGARIHYKGNKQLLQLDVKTGDLLLSEKLDREGLCGATDPCILHFQLLLENPVQFFQAELELTDINDHSPEFPDREMLLKIPENVQPGAVFPLKTAQDLDIGNNTVQRYAVSPNSHFHVVTHNRGDGRKFPELVLDKAVDREEQPKLSLILSALDGGAPPRSGTTAVRIEVVDINDNAPEFLQSLYEVQIPENSPLNTLVAAVSARDLDAGTNGNVAYALFQGDEVTQPFVIDELTGEIRLQRALDFEETQRYTVEITATDGGGLSGKCTVAIEVEDVNDNAPELTMSTLVSSTPENSPETVVAVFSVSDPDSGDNGRMVCSIQDDLPFLLKPTFKNFYTLVTERPLDREERAEYNITITVGDLGTPRRHTQHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRATDADAGANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRALDYEALRAFDFQVRAADRGAPALSSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGDAGQNAWLSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSASVPLHVLLVDGFSQPHLPPPEAPGRAPGAGADEPLTVALVGALACVSALLVGALLALAAGRLCRRGGAASAGLLDVGGTGTLAHGYRYEVCLAGGSGLDEFKFLKPILPSGLVQDIGQD", "length": 766, "header": "tr|F1RGD4-1|F1RGD4_PIG Isoform 1 of Cadherin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110259515 PE=4 SV=5 CANONICAL=F1RGD4-1" }, "isoforms": [ { "isoform_ac": "F1RGD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGD4/entry", "sequence": { "sequence": "TPGGKRQVFFLVILLFWWEAGSEAIRYSMPEERESGSFVANLAKDLGLGVGQLATRGARIHYKGNKQLLQLDVKTGDLLLSEKLDREGLCGATDPCILHFQLLLENPVQFFQAELELTDINDHSPEFPDREMLLKIPENVQPGAVFPLKTAQDLDIGNNTVQRYAVSPNSHFHVVTHNRGDGRKFPELVLDKAVDREEQPKLSLILSALDGGAPPRSGTTAVRIEVVDINDNAPEFLQSLYEVQIPENSPLNTLVAAVSARDLDAGTNGNVAYALFQGDEVTQPFVIDELTGEIRLQRALDFEETQRYTVEITATDGGGLSGKCTVAIEVEDVNDNAPELTMSTLVSSTPENSPETVVAVFSVSDPDSGDNGRMVCSIQDDLPFLLKPTFKNFYTLVTERPLDREERAEYNITITVGDLGTPRRHTQHNLTVRVADVNDNAPAFSQPAYTLRVRENNSPALHIGTVRATDADAGANAQLTYSLLPPSDPHLPLASLVAINPDTGQLFALRALDYEALRAFDFQVRAADRGAPALSSQARVRVLVADANDHAPVVLYPPPNASAPCTELLPRAAEPGYLLAKVVAVDGDAGQNAWLSYRLLQATEPGLFGVGAHSGEVRTARPLSERDAPRQRLLLLVRDHGEPPLSASVPLHVLLVDGFSQPHLPPPEAPGRAPGAGADEPLTVALVGALACVSALLVGALLALAAGRLCRRGGAASAGLLDVGGTGTLAHGYRYEVCLAGGSGLDEFKFLKPILPSGLVQDIGQD", "length": 766, "header": "tr|F1RGD4-1|F1RGD4_PIG Isoform 1 of Cadherin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110259515 PE=4 SV=5 CANONICAL=F1RGD4-1" }, "locus": { "chromosome": "2", "start_pos": 142832878, "end_pos": 142830257, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015710.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015710.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015297.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015297.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGD4", "url": "https://www.uniprot.org/uniprotkb/F1RGD4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RGD4", "url": "https://www.uniprot.org/uniprotkb/F1RGD4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1RGD4", "url": "https://www.uniprot.org/uniprotkb/F1RGD4" } ], "pmid": "" }, { 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"MWSQRQGRLRPLRCGVEELRRRRREQEAALRKARREQQLVSKRLLRDETSEEAEEACVAVILGEAEIQQFLRLAQRGPEEKEREQALVSLRRGLQHPETQQTFIRLEGSIRTLVGLLTSNQALLQLGAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSADFITLEDGGAPSSPARPETALLLSCSQELCLYTLGNLIVESEAVRRQLLPQGIVPALAACIQSPHLTVLEALGYALAQLLQAKEAPEKIIPSVLGSTLPQHMLQLLQPGPKLSLGVAVEFAWCLHYIICSQVNNALLITHGALSTLGLLLLDLAGAVQRTEDAGLELLACPVLRCLSNLLTEAAVEAVGVHPQLRDERVVAALFILLDFFLQKQPSLLPEGLWLLNNLTANSPSFCTSLLSLDLTEPLLQLLSVSNVVSGLVLTVLCNVAEKGPAYCQRLWPGPLLPSLLDTLAFSDTVVVGQSLELLQLLFLYQPGAAQAFLQRSGLQALQRHEEVAQLQDRVRALQQTALRG", "length": 517, "header": "tr|F1RGE4-1|F1RGE4_PIG Isoform 1 of Transmembrane and coiled-coil domains 6 OS=Sus scrofa OX=9823 GN=TMCO6 PE=4 SV=4 CANONICAL=F1RGE4-1" }, "locus": { "chromosome": "2", "start_pos": 142358731, "end_pos": 142352100, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015700.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015700.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015287.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015287.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGE4", "url": "https://www.uniprot.org/uniprotkb/F1RGE4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "F1RGE4", "url": "https://www.uniprot.org/uniprotkb/F1RGE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nuclear import signal receptor activity", "id": "GO:0061608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061608", "evidence": [ { "database": "UniProtKB", "id": "F1RGE4", "url": "https://www.uniprot.org/uniprotkb/F1RGE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": 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} ] } } ], "crossref": [ { "id": "F1RGF7", "url": "https://alphafold.ebi.ac.uk/entry/F1RGF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014356", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014356", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524673", "url": "https://www.ncbi.nlm.nih.gov/gene/100524673", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524673", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524673", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TGQARHY", "url": "https://omabrowser.org/oma/group/TGQARHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGF7", "url": "https://www.orthodb.org/?gene=F1RGF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43908", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43908", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43908:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43908:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09320", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09320", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124041", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124041", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RGF7", "url": "https://www.uniprot.org/uniprotkb/F1RGF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGF7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAATLGGGERWTEAYIDAVRRNKYPEDRPPESHDPCGCCNCMKAQSEKKPENEWTQTRQGEGNATYTEEQLLGVQRIKKCRNYYEILGVSRNASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQMTFTAPRARPYNYYRDFEADITPEELFNVFFGGHFPTGNIHMFSNVTDDTHYYRRRHRHERMQTRKEEEEDKPQTTYSAFIQLLPVLVIVIISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPYFVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLKQKAESLKLENCEKLSKLLGLRRGG", "length": 358, "header": "tr|F1RGF7-1|F1RGF7_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member C18 OS=Sus scrofa OX=9823 GN=DNAJC18 PE=4 SV=2 CANONICAL=F1RGF7-1" }, "isoforms": [ { "isoform_ac": "F1RGF7-1", "url": "https://www.uniprot.org/uniprotkb/F1RGF7/entry", "sequence": { "sequence": "MAATLGGGERWTEAYIDAVRRNKYPEDRPPESHDPCGCCNCMKAQSEKKPENEWTQTRQGEGNATYTEEQLLGVQRIKKCRNYYEILGVSRNASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQMTFTAPRARPYNYYRDFEADITPEELFNVFFGGHFPTGNIHMFSNVTDDTHYYRRRHRHERMQTRKEEEEDKPQTTYSAFIQLLPVLVIVIISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPYFVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLKQKAESLKLENCEKLSKLLGLRRGG", "length": 358, "header": "tr|F1RGF7-1|F1RGF7_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member C18 OS=Sus scrofa OX=9823 GN=DNAJC18 PE=4 SV=2 CANONICAL=F1RGF7-1" }, "locus": { "chromosome": "2", "start_pos": 141337345, "end_pos": 141301126, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064594.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064594.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054704.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054704.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGF7", "url": "https://www.uniprot.org/uniprotkb/F1RGF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524673", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524673", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C5R7-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member C18", "gene_name": "DNAJC18", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTYTAEQLDGVRRIKSCRNYYEILGVERDATEEDLKKAYRRLALKFHPDKNRAPGATEAFKAIGNAFAVLSNPEKRLRYDEYGSDHEHVSTGQARHYNYYTEFEADITPEEIFNVFFGGHFPTGNIHMFSNVARDAHYYPRRHRNERAWTQEQEEEENRPQNSYSAFIQLMPIFIIIIVSVITQLMATNPPYSLFYKSSIGHVISRETENLQVPYYVDKNFEKNYQGAELQELERTVEKDYIDYIQTSCWKEKQQKSDLSNLAKLYRDERLKQKAESLKLEHCEKLSSLIGMHKGG", "length": 296 }, "evidence": [ { "id": "F1RGF7", "url": "https://omabrowser.org/oma/group/F1RGF7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HVH7-1", "protein_name": "DnaJ homolog subfamily C member 18", "gene_name": "Dnajc18", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAATLGSGERWTQAYIDAIRRNKYPEDRQPGSHDPCGCCNCMKAQKEKKSENEWNQTRQGEGSSTYTEEQLLGVQRIKKCRNYYEILGVSQNASDEELKKAYRKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQMTFTAPRARSYHYYRDFEADISPEELFNVFFGGHFPSGNIHMFSNVTDDSHYYHRRHRHERTQTHKREEEDKPQTPYSAFVQLLPVLVIVVISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPYFVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLRQKAESLKLENCEKLSKLIGLRRGG", "length": 358 }, "evidence": [ { "id": "F1RGF7", "url": "https://omabrowser.org/oma/group/F1RGF7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0H8V1-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member C18", "gene_name": "Dnajc18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAATLGSGERWTQAYIDAIRRNKYPEDKQPDSHDPCGCCNCMKAQKEKKSENEWSQTRQGDGNATYTEEQLRGVQRIKKCRNYYDILGVSHNASDEELKKAYKKLALKFHPDKNCAPGATDAFKAIGNAFAVLSNPDKRLRYDEYGDEQVTLTAPRARPYHYYRDVEADISPEELFNVFFGGHFPSGNIHMFSNVTDDSHYYRRRHRHERTQAHKREEDKSQTPYSAFVQLLPVLLIVTISVITQLLAANPPYSLFYKSTLGYTISRETQNLQVPYFVDKNFDKAYRGASLRDLEKTIEKDYIDYIQTSCWKEKQQKSELTNLAGLYRDERLRQKAESLKLENCAKLSKLIGLRRAG", "length": 357 }, "evidence": [ { "id": "F1RGF7", "url": "https://omabrowser.org/oma/group/F1RGF7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5EA26-1", "protein_name": "DnaJ homolog subfamily C member 18", "gene_name": "DNAJC18", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AQFECVE", "url": "https://omabrowser.org/oma/group/AQFECVE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGH4", "url": "https://www.orthodb.org/?gene=F1RGH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33775", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33775", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33775:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33775:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15232", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15232", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RGH4", "url": 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"database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 264, "start_aa": "Thr", "end_pos": 264, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr264", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 280, "start_aa": "Thr", "end_pos": 280, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr280", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 550, "start_aa": "Thr", "end_pos": 550, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr550", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 989, "start_aa": "Thr", "end_pos": 989, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr989", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGH4", "url": "https://www.uniprot.org/uniprotkb/F1RGH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522667", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522667", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A087WR45-1", "protein_name": "Proline rich basic protein 1", "gene_name": "Prob1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTALAPLALPGLSRRLPAPAGRQDSSGSSGSYHTAPGSPEPPDVGPDTEGRGTWLWVAPGRGAGAQPVLSVSAQNSRQQHGSGSGFPRGPGSGPLPPRPQLRMLPSGEMEVIFGAGPLFNRSDAEDLQEQQLMAPTFSSPQLPGPASPASVSSQPQVPDGGSRWATYLELPPREPSPAVSGQYECVEVALEERSAPVRPRTVPKRQIELRPRPRSPSQDSRAPRPRLLLRTGSLDESLSRLQAAAGIVQTALARKLGSAVPAPSNVTFKSTAKPESTTNSQETTDSTRVLLEEAKSRPPRAHDNSSSARVPRPWPSLRERAIRRDKPAPGTEPLGPVSSSIFLQSEEKPHQAYKQESKTQFPRETPDRTVPRARSPPFHSRGSRVVPSRVVRPRSPSPPQQAPNGSPHNPPQPSKIVWRRSSPAFPGGTSSAWENRNASVEEVVSRRTPSPPPLPQWTQGVARVGNPCPEAPLVWKVPNSRGGDAVGLSRDSSLPALLPREAPHPIETRTPSPGETWSPVVQGASTALHQEAMNGLTQELEPPTPSAPATPELTEALCLLSLENAGIAVRGGQRSPDVDTPEQPRSHLTSTLDDDVCPEAVGSGEAASERPRVTIPRPRDVRKMVKTTYAPSFPAGTPGSGLPAPPADTCGEDGDASKTHKLPALESPAPAHYTSIFLKDFLPVVPHPYESPEPSLHATPKDASQSSGVPRRRAENSTAKPFARSEIRLPGALAFGQRREKTPSVQRRGPGGENPDAEAQRLVRDPEGRTSPLGGARTSTQCSPLESTGTRPPRPGSPQACPNSSLRAAPELETPLVAPATAVQAPLLPDHPATAARAAAPFPRAASAPPTDRLPPASSLGRRPPGAAPAGKVLVDPESGRYYFVEAPRQPRLRLLFDPESGQYVEVLLPPSPSPSRQPRQPYAPLALGPGLYPPAYGPISGPSLSPLSPNLSALGSLQLPWAPEAGPLEGMYYMPLSGTPSPAPPMLFCAPPSSSGPIQSSKGSVFPL", "length": 1010 }, "evidence": [ { "id": "F1RGH4", "url": "https://omabrowser.org/oma/group/F1RGH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9S046-1", "protein_name": "Proline rich basic protein 1", "gene_name": "PROB1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTAFAQPALPGFPGRLPAAPARRQDSSGSSGSYHTAPGSPEPPDVGPDAEGRANWPRVAPALGAGVQPRLSVSAQNSRQQLLPGSGFPRGPASGLRPPQPQLRMLPSGEMEVIFGAGPLFSRSDAEDREVQQLTTRAFRSLSPPGSTSPIPDEPQPQGPDGGSRWATYLELRPRAASPATPSQFECVEVALEEHTAPARPRTVPKRQIELRPRPRSPPREANAPRPRLLLRTGSLDESLSRLQAAADLVQTALARKLSPAPPAPSNATFGPTVPPEPATPETLRSTRVALEEAKSLPPRVNYSSAPARAPRPWPSLRERAIRRDKPAPGTEPLGPVSSSIFLKSGEKPEEVHQKEPKARFPRDTPAQTVLRAQGPPFQSRPPWEVSSKAVRRRSPSPPWEAPNGTVRGPHCTSPQNLSPWNRTIRKVSSPSIPEASSTWDNQDAAVTETVSRKSPSPPTLSQWNRGVARAKSPSPEAPSSWEVPDPAVGDAVEGSRSPSPPTLPSWETPDRSVGTWSPSPQETWNSTVQSSSVVSTPVAINGAAQEELVPPTPSAPGTPKLTEIQSPSTREIPDLTSRGNQLSPEVAAPQLPLSRTVDVDVLPEAVGSGKAASGRPRVAIPRPRDVRKMVKTTYAPSFAASTPDSGLPAPPAEPRGEEGSASKTQELQALGPPAPSHYTSIFLKDFLPVVSHPYEPPEPTPDTVPRDVTQSNGVLRRRAENSTAKPFARTEIRLPGALALGRRPERTRGVAVHGPGGKNRDAEAQRLVPDNKGRTSPLGGARTSPQQSPIGPAETQPPGPPRPSSPQAHPSSSSGMESELETPPKALEPAVAVQPPLLREPQASTRRTARAQPRAASAPPLDRSADGSSQGTRRPPGAANPGKVLVDPESGRYYFVEAPRQPRLRLLFDPESGQYVEVLLPPSPSVPPRRVYTPLALGPGLYPPAYGPLPGLSLPPSPGPPAFSGPQLPWASEAGPLDGMYYLPVSGTPSPAPPFLLCAPPSSLGPSQPNKGSLFPV", "length": 1018 }, "evidence": [ { "id": "F1RGH4", "url": "https://omabrowser.org/oma/group/F1RGH4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7EW31-1", "protein_name": "Proline-rich basic protein 1", "gene_name": "PROB1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTALAPPALPGIPRQLPTAPARRQDSSGSSGSYYTAPGSPEPPDVGPDAKGPANWPWVAPGRGAGAQPRLSVSAQNSRQRHGPGSGFPRGPGSGPRPPQPQLRTLPSGEMEVIFGVGPLFGCSGADDREAQQQFTEPAFISPLPPGPASPAAVPRQSQVPDGGSRWATYLELRPRGPSPAAPAQFECVEVALEEGAAPARPRTVPKRQIELRPRPQSPPRAAGAPRPRLLLRTGSLDESLGPLQAAAGFVQTALARKLSPEAPAPSSATFGSTGRSEPETRETARSTHVVLEKAKSRPLRVRDNSAPAKAPRPWPSLRERAIRRDKPAPGTEPLGPVSSSIFLQSEEKIQEARKTRFPREAPDRTVQRARSPPFECRIPSEVPSRAVRPRSPSPPRQTPNGAVRGPRCPSPQNLSPWDRTTRRVSSPLFPEASSEWENQNPAVEETVSRRSPSPPILSQWNQCVAGERSPSLEAPSLWEIPHSAVADAVEPRSSPSPPAFFPWEAPDRPIGTWGPSPQETWDPMGPGSSIAFTQEAQNGLTQEELAPPTPSAPGTPEPTEMQSPSTREISDLAFGGSQQSPEVAAPEPPGSHPVGTLDADKCPEVLGPGEAASGRPRMAIPRPRDVRKLVKTTYAPGFPAGAQGSGLPAPPADPCGEEGGESKTQEPPALGPPAPAHYTSVFIKDFLPVVPHPYEPPEPSFDTVARDASQPNGVLRRRAENSTAKPFKRTEIRLPGALALGRRPEVTSRVRARGPGGENRDVEAQRLVPDGDGRTSPLGGARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPREPLALAGRTAPAQPRAASAPPTDRSPQSPSQGARRQPGAAPLGKVLVDPESGRYYFVEAPRQPRLRVLFDPESGQYVEVLLPPSSPGPPHRVYTPLALGLGLYPPAYGPIPSLSLPPSPGPQALGSPQLPWVSEAGPLDGTYYLPVSGTPNPAPPLLLCAPPSSSGPTQPGKGSLFPL", "length": 1015 }, "evidence": [ { "id": "F1RGH4", "url": "https://omabrowser.org/oma/group/F1RGH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1M6Z4-1", "protein_name": "Proline-rich basic protein 1", "gene_name": "Prob1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTALAPLALPGLSRRLPASAGRQDSSGSSGSYHTAPGSPEPPDVGPDTEGQGTWLWVASGRGAGAQPVLSVSAQNSRQQHCSGSGFPRGPGSGPPLPQPQLRMLPSGEMEVIFGAGPLFSRSDAEDLEEQQLVAPTFSSPLLPGPASPVSVSSQPQVPDGGSRWATYLELPPREPSPAVSGQYECVEVALEERTAPVRPRTVPKRQIELRPRPRSPSQDSRAPRPRLLLRTGSLDESLSRLQAAAGIVQTALARKLGSAVPAPSNVTLKSTGKRESTTNSQETAASTHVVLEEAKSRPPRAHDHSASAKAPRPWPSLRERAIRRDKPPPGTEPLGPVSSSIFLQSEEKIHQAHKQEPKTQFPRETPDRTVPRARSPPSRGSRVVPSRVVRPRSPSPPLQAPNGAVRGPRCPSPQNLPQPHKIVWRTSSPAFPGASSAWEDRNASVEEVVSRRTPSPPPLSQWTQGVARVGNPCPEAPLLWKVPNSRGGDAAGLSRDPSLPALLPRESPHPIETRSPSPGETWSPIAQASSTALRQEALNGLTQKLESPTPSAPGTPELPEAQCLLSLENANIAFRDGQPSPDVDTTEQPRSHLTSILDDDVCPETLGSGEATSGRPRVTIPRPRDVRKMVKTTYAPSFPAGTPGSGLPAPPADTCGEEGDVSKTQKLPALESPAPAHYTSIFLKDFLPVVPHPYETPEPSLPATPKDASQSSGVPRRRAENSTAKPFARSEIRLPGALAFGQRREKTPSVQRPGPGGENPDAEAQSLVPDREGPTSPLGGARTSTQRSPLESTGTRPPRPGSPQAGPNSSLRAAPELETPLVSPATAVQAPLLPDPPATAARTAAPFPRAASAPPTDRLHPASSLGMRRPPGAVPAGKVLVDPESGRYYFVEAPRQPRLRLLFDPESGQYVEVLLPPSPSPSRPPRQPYAPLALGPGLYPPVYGPISGPSLSPLSHNLPALGGLQLPWAPEAGSLEGMYYMPLSGTPSPAPPPLAFCGPPPSSGPIQSSKGSVFPL", "length": 1017 }, "evidence": [ { "id": "F1RGH4", "url": "https://omabrowser.org/oma/group/F1RGH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RGH4", "url": "https://www.uniprot.org/uniprotkb/F1RGH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 722, "end_pos": 724, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGH4" }, { "id": "PF15232", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15232" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4585", "eco_id": "ECO_0000259", "start_pos": 878, "end_pos": 944, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 181, 264, 280, 550, 989 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 401, "end_pos": 403 }, { "start_pos": 722, "end_pos": 724 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGI5-1", "uniprot_ac": "F1RGI5", "uniprot_id": "F1RGI5_PIG", "mass": { "chemical_mass": 12245.0, "monoisotopic_mass": 12245.0 }, "refseq": { "ac": "NP_001231618", "name": "cornifelin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231618" }, "gene_names": [ { "name": "CNFN", "type": "recommended", "evidence": [ { "id": "F1RGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGI5" } ] }, { "name": "CNFN", "type": "synonym", "evidence": [ { "id": "NP_001231618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231618" } ] } ], "protein_names": [ { "name": "Cornifelin", "type": "synonym", "evidence": [ { "id": "F1RGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGI5/entry#names_and_taxonomy" } ] }, { "name": "cornifelin", "type": "synonym", "evidence": [ { "id": "NP_001231618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231618" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGI5", "url": "https://www.uniprot.org/uniprotkb/F1RGI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNFN", "url": "https://www.uniprot.org/uniprotkb/F1RGI5", "locus": { "chromosome": "6", "start_pos": 49572284, "end_pos": 49570032, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027022", "url": "https://www.ensembl.org/id/ENSSSCG00000027022" } ] } } ], "crossref": [ { "id": "F1RGI5", "url": "https://alphafold.ebi.ac.uk/entry/F1RGI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027022", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027022", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512661", "url": "https://www.ncbi.nlm.nih.gov/gene/100512661", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512661", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512661", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CASTCYQ", "url": "https://omabrowser.org/oma/group/CASTCYQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGI5", "url": "https://www.orthodb.org/?gene=F1RGI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15907", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15907", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231618", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RGI5", "url": "https://www.uniprot.org/uniprotkb/F1RGI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGI5-1", "url": "https://www.uniprot.org/uniprotkb/F1RGI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYPVTSQPQCASGCYQTQLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLPCALCQMARELKIRE", "length": 111, "header": "tr|F1RGI5-1|F1RGI5_PIG Isoform 1 of Cornifelin OS=Sus scrofa OX=9823 GN=CNFN PE=3 SV=3 CANONICAL=F1RGI5-1" }, "isoforms": [ { "isoform_ac": "F1RGI5-1", "url": "https://www.uniprot.org/uniprotkb/F1RGI5/entry", "sequence": { "sequence": "MSYPVTSQPQCASGCYQTQLSDWHTGLTDCCNDMPICLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLPCALCQMARELKIRE", "length": 111, "header": "tr|F1RGI5-1|F1RGI5_PIG Isoform 1 of Cornifelin OS=Sus scrofa OX=9823 GN=CNFN PE=3 SV=3 CANONICAL=F1RGI5-1" }, "locus": { "chromosome": "6", "start_pos": 49572149, "end_pos": 49571282, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029909.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029909.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027477.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027477.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGI5", "url": "https://www.uniprot.org/uniprotkb/F1RGI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512661", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512661", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LTJ5-1", "protein_name": "Cornifelin", "gene_name": "Cnfn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFEMHDHVKGKAMSYPVTSQPQCTNTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRERYHIQVRAHPGPQGLRLGIAGVESRDCHLAPKSKAPDCSRFLSFPPSRAPSGTTGLLSPFVCPAPSVRWRGN", "length": 162 }, "evidence": [ { "id": "F1RGI5", "url": "https://omabrowser.org/oma/group/F1RGI5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VBW2-1", "protein_name": "Cornifelin", "gene_name": "CNFN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSYPVTSQPQSASTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCTPYLPGGLHSLRTGMRERYRIQGSIGKDWAALTFCLPCALCQMARELKIRE", "length": 111 }, "evidence": [ { "id": "F1RGI5", "url": "https://omabrowser.org/oma/group/F1RGI5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PCW6-1", "protein_name": "Cornifelin", "gene_name": "Cnfn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYPVTSQPQCANTCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSLRTGMRERYHIQGSVGHDWAALTFCLPCALCQMARELKIRE", "length": 111 }, "evidence": [ { "id": "F1RGI5", "url": "https://omabrowser.org/oma/group/F1RGI5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYD5-1", "protein_name": "Cornifelin", "gene_name": "CNFN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSYPVTSQPQCATTSCYQTQLSDWHTGLTDCCNDMPVCLCGTFAPLCLACRISDDFGECCCAPYLPGGLHSIRTGMRERYHIQGSVGHDWAALTFCLPCALCQMARELKIRE", "length": 112 }, "evidence": [ { "id": "F1RGI5", "url": "https://omabrowser.org/oma/group/F1RGI5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cornified envelope", "id": "GO:0001533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001533", "evidence": [ { "database": "UniProtKB", "id": "F1RGI5", "url": "https://www.uniprot.org/uniprotkb/F1RGI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RGI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 111, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RGI5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RGI5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], 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"total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGJ6-1", "uniprot_ac": "F1RGJ6", "uniprot_id": "F1RGJ6_PIG", "mass": { "chemical_mass": 163700.0, "monoisotopic_mass": 163700.0 }, "refseq": {}, "gene_names": [ { "name": "CIC", "type": "recommended", "evidence": [ { "id": "F1RGJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6" } ] } ], "protein_names": [ { "name": "Protein capicua homolog", "type": "recommended", "evidence": [ { "id": "F1RGJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcriptional repressor which plays a role in development of the central nervous system (CNS). In concert with ATXN1 and ATXN1L, involved in brain development.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQ73", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ73#function" }, { "database": "UniProtKB", "id": "ARBA00053962", "url": "https://www.uniprot.org/uniprotkb/ARBA00053962#function" }, { "database": "UniProtKB", "id": "F1RGJ6", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGJ6", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIC", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6", "locus": { "chromosome": "6", "start_pos": 49638990, "end_pos": 49662947, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003030", "url": "https://www.ensembl.org/id/ENSSSCG00000003030" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003030", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003030", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21990", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21990", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13059", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13059", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13059:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13059:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AQ73", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ73-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGJ6", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RGJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSAHRPLVPASGAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGTGSADPGRPPGATCPESPGPGPPHTLGVVEPGKGPLPITEEEASGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSMSETGTAAAPGVSSELLSVTAQTLLSSDTKAPGSASCGAERLHTVGGPGSARPRAFSHSGVHGLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFATPGEGGNLAASGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFSATDIDLKCKERVTDSESGDSSGEDPEGSKGFGRKVFSPVIRSSFTHCRPSLDPEPPGPPDPPAGFGKGYGPTPSSSSSSPASSSAATSFPLGSGTFKAQESGQGSTTGPLRPPPPGTGGPATPSKAARFLPTDPATFRRKRPESVGGLEPPGPSVIAAPPSGGGSVLQTLVLPSNKEEREGSGARVPSAPAPSLAYGAPAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPASGRMEASPNDTAGPRTETVTGSRAPGGSPLGVSLVYSDKKSGAATSAAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPPPPAVQFIAQGGPGSGAAGGSGAGAGSGPNGPMPLGILQPGPLGKAGGITQVQYILPTLPQQLQVAPAPAPAPGTKAAAPGGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKAQSVSPVQAPPPGGSAQLLPGKVLVPLATPSVSVRGGGASQPLPLVSPPFSVPVQNGAQPPSKIIQLTPVPVSTPSGLVPPLSPATLPGPTSQPQKVLLPSSTRITYVQSAGGHALPLGTSPASSQAGTVTSYGPTSSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVSPVPSPQLPPTCAAPSGPVITAFYPGSPIPTSSAPLAQPSQAPPGLVYTVATSTTPPAATILPKGPPAPATATPAPTSPFPSATAGSMTYSLVAPKAQRPTPKAPQKVKAAIASIPVGSFEAGAPGRPGPAPRQPLEPGLAREPPASESELEGQPTTPAPPLPPETWAPTARSSPPPPPPAEERTSAKAPETVANKFPSSSADWRVPGLGLESRGEPPTPPSPAPAPALAPGSSGGSSEGSSGRAAGDTPERKEAAGTGKKVKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTEAEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPSGAEAPLPGPPPTGTAAAPGPTPSPAGGPDPTSPGSDSGTAPAAPPLPPPSEPGSGQPGWEGPPQPSPPPSGPSTAATGR", "length": 1609, "header": "tr|F1RGJ6-1|F1RGJ6_PIG Isoform 1 of Protein capicua homolog OS=Sus scrofa OX=9823 GN=CIC PE=4 SV=5 CANONICAL=F1RGJ6-1" }, "isoforms": [ { "isoform_ac": "A0A287AQ73-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ73/entry", "sequence": { "sequence": 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"database": "UniProtKB", "id": "F1RGL9", "url": "https://www.uniprot.org/uniprotkb/F1RGL9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WSCD1", "url": "https://www.uniprot.org/uniprotkb/F1RGL9", "locus": { "chromosome": "12", "start_pos": 51154478, "end_pos": 51196933, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017894", "url": "https://www.ensembl.org/id/ENSSSCG00000017894" } ] } } ], "crossref": [ { "id": "F1RGL9", "url": "https://alphafold.ebi.ac.uk/entry/F1RGL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017894", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017894", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522103", "url": "https://www.ncbi.nlm.nih.gov/gene/100522103", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522103", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522103", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYAGHLG", "url": "https://omabrowser.org/oma/group/KYAGHLG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGL9", "url": "https://www.orthodb.org/?gene=F1RGL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45964", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45964", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45964:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45964:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483136", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQ75", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQ75-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ75-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGL9", "url": "https://www.uniprot.org/uniprotkb/F1RGL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLFFLTAAYLMTGSLLLLQRARVGLPPGPRAPGPLQALPVAAVALGVGLLDSRALHDPRVSPELLLGVDVLRGPLARPRPGPRWLRSRNSELRQLRRRWFHRFMGDSQGPPALGPEAPRPATSSRGTYVGCFSDNGQERTLKGAVFFDLRKMTVPHCQDACAERSYLYAGLEAGAECYCGNRLPVVSVGPEECNHECKGEKSSVCGGVGRLSVYRVEELQPSSRKRRTVTYRGCFRLPGNVTHAFADSLVQANVTVETCSGFCSQKEFPLAVLRGWECYCAYPTPQFNLRDAVDSSLCGQESEAQRLAEYCEVYQTPVQDTRCTDRRFLPTKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAADRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRRSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRPQDPEPFTPEMKDLINGYIRTVDQALRDHNWAGLPREYVPR", "length": 575, "header": "tr|F1RGL9-1|F1RGL9_PIG Isoform 1 of WSC domain containing 1 OS=Sus scrofa OX=9823 GN=WSCD1 PE=3 SV=1 CANONICAL=F1RGL9-1" }, "isoforms": [ { "isoform_ac": "A0A287AQ75-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQ75/entry", "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLFFLTAAYLMTGSLLLLQRARVGLPPGPRAPGPLQALPVAAVALGVGLLDSRALHDPRVSPELLLGVDVLRGPLARPRPGPRWLRSRNSELRQLRRRWFHRFMGDSQGPPALGPEAPRPATSSRGTLRGCGVPWLEIFRENGERQALAREPSGSPLALWGLLGPCTARQASLVESGPLASPWDSCWGCRQRGRLFEAGQPAILLRGDPAAAEAAGGPIHHWAFHYTLDNIHNGIKCTYVGCFSDNGQERTLKGAVFFDLRKMTVPHCQDACAERSYLYAGLEAGAECYCGNRLPVVSVGPEECNHECKGEKSSVCGGVGRLSVYRVEELQPSSRKRRTVTYRGCFRLPGNVTHAFADSLVQANVTVETCSGFCSQKEFPLAVLRGWECYCAYPTPQFNLRDAVDSSLCGQESEAQRLAEYCEVYQTPVQDTRCTDRRFLPTKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAADRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRRSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRPQDPEPFTPEMKDLINGYIRTVDQALRDHNWAGLPREYVPR", "length": 686, "header": "tr|A0A287AQ75-1|A0A287AQ75_PIG Computationally mapped isoform of WSC domain containing 1 OS=Sus scrofa OX=9823 GN=WSCD1 PE=3 SV=1 CANONICAL=F1RGL9-1" }, "locus": { "chromosome": "12", "start_pos": 51187479, "end_pos": 51158515, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037542.2", "url": "https://www.ensembl.org/id/ENSSSCT00000037542.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046193.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046193.2" } ] } }, { "isoform_ac": "F1RGL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGL9/entry", "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLFFLTAAYLMTGSLLLLQRARVGLPPGPRAPGPLQALPVAAVALGVGLLDSRALHDPRVSPELLLGVDVLRGPLARPRPGPRWLRSRNSELRQLRRRWFHRFMGDSQGPPALGPEAPRPATSSRGTYVGCFSDNGQERTLKGAVFFDLRKMTVPHCQDACAERSYLYAGLEAGAECYCGNRLPVVSVGPEECNHECKGEKSSVCGGVGRLSVYRVEELQPSSRKRRTVTYRGCFRLPGNVTHAFADSLVQANVTVETCSGFCSQKEFPLAVLRGWECYCAYPTPQFNLRDAVDSSLCGQESEAQRLAEYCEVYQTPVQDTRCTDRRFLPTKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAADRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRRSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRPQDPEPFTPEMKDLINGYIRTVDQALRDHNWAGLPREYVPR", "length": 575, "header": "tr|F1RGL9-1|F1RGL9_PIG Isoform 1 of WSC domain containing 1 OS=Sus scrofa OX=9823 GN=WSCD1 PE=3 SV=1 CANONICAL=F1RGL9-1" }, "locus": { "chromosome": "12", "start_pos": 51187479, "end_pos": 51158515, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041387.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041387.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055709.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 301, "start_aa": "Thr", "end_pos": 301, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr301", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGL9", "url": "https://www.uniprot.org/uniprotkb/F1RGL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522103", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522103", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1ALA7-1", "protein_name": "WSC domain containing 1", "gene_name": "WSCD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKVFFRLQKFLRRTQFLLFFLTAAYLMAGSLLLLQRARLAAQQGPRGSSGLALPGPDMGLGAKAADPHLAQSPGAQLPMGVDTLPEVELRHSPRWMASRNSELRWLRRRWFHRFIGDQEPMQTAGLRAMRGTAEHKGTYVGCFSDDSRERTLKGAVFYDLRKMTVAHCQEACAERAYAYAGLAYGAECYCGNKLPATTSRPEECNSECKGEKGSVCGGVNRLSVYRVEELQAAAPRRRNVIYRGCFRAPENLTDTFPASLIQPNLTVEMCSEFCSKKEFPLAVIRGRECYCGYPTGHFPLRHGADRRLCSAMPNASSAAAGGYCLAYQTPVQDTRCTDRKFLTTKSKGFIALSSFPGAGNTWARHLIEHATGYYTGSYYFDGALYNKGFKGEKDHWRSRRTICVKTHESGKTEIEMFDSAILLIRNPYKSLMAEFNRKFAGHLGYAADRNWKSKDWPDFVNSYASWWASHVLDWLKYGKRLLVIHYEDLKQSLIPKLKEMVEFLNMTVTEDRLLCVENNRDGNFKRSGAKQKDFEPFTQEMKDLINRYILTVDEALRGRNFTGLPREYVPR", "length": 572 }, "evidence": [ { "id": "F1RGL9", "url": "https://omabrowser.org/oma/group/F1RGL9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MJU6-1", "protein_name": "WSC domain containing 1", "gene_name": "WSCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLFFLTAAYLMTGSLLLLQRARVGLPPGPRAPGPLQALPVAAVALGVGLLDSRALRDGRVSPELLLGVDVLRGPLARPRPGPRWLRSRNSELRQLRRRWFHHFMADPPGPPALSPEAPQPATSSRGTYVGCFSDDGQERTLKGAVFFDLRKMTVSHCQDACAERSYIYAGLEAGAECYCGNRLPAMSVGPEECNHECKGEKSSVCGGVGRLSVYRVEELQPGSRKRRTVTYRGCFRLPENITHAFPDSLVQANVTVETCSGFCSQKEFPLAILRGWECYCAYSTPQFNLRDAVDSSLCGQESEAQRLAEYCEVYQTPVQDTRCTDRRFLPTKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAADRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRRSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRPHDPEPFTPEMKDLINGYIRTVDQALRDHNWAGLPREYVPR", "length": 575 }, "evidence": [ { "id": "F1RGL9", "url": "https://omabrowser.org/oma/group/F1RGL9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q505J3-1", "protein_name": "Sialate:O-sulfotransferase 1", "gene_name": "Wscd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLLFLTAAYLMTGSLLLLQRARVALPQALRAPGSLQALPVATVALGVGLLDSRSLHDPHSSPDLLLDVDTLRSPLARVPPGIRWPRRNRSSLRRRWLHHLTSDPQGPPTLGPEASGPASHNQGNYLGCFSEEGQERTLKGAVFYDLRKMTVSHCQEACAERSYVYAGLEAGAECYCGNRLPATRVSLKECNQECKGEKGSMCGALHRLSVYSVGLQQSGAKKRWTATYRGCFPLPENITRTFSSSMTQANVTVETCSGFCSQKEFPLAILRGWACYCAYPTPQFSLRDAVDGALCSQGTEAQGLPGYCEVYQTPVQDTRCTDRKFLPNKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAPDRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRHSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRHPHDQEPFTPEMKDLINGYIRTVDQALRDHNWAGLPREYVPR", "length": 572 }, "evidence": [ { "id": "F1RGL9", "url": "https://omabrowser.org/oma/group/F1RGL9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q658N2-1", "protein_name": "Sialate:O-sulfotransferase 1", "gene_name": "WSCD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLFFLTAAYLMTGSLLLLQRVRVALPQGPRAPGPLQTLPVAAVALGVGLLDSRALHDPRVSPELLLGVDMLQSPLTRPRPGPRWLRSRNSELRQLRRRWFHHFMSDSQGPPALGPEAARPAIHSRGTYIGCFSDDGHERTLKGAVFYDLRKMTVSHCQDACAERSYVYAGLEAGAECYCGNRLPAVSVGLEECNHECKGEKGSVCGAVDRLSVYRVDELQPGSRKRRTATYRGCFRLPENITHAFPSSLIQANVTVGTCSGFCSQKEFPLAILRGWECYCAYPTPRFNLRDAMDSSVCGQDPEAQRLAEYCEVYQTPVQDTRCTDRRFLPNKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAADRNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRRSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRSHDPEPFTPEMKDLINGYIRTVDQALRDHNWTGLPREYVPR", "length": 575 }, "evidence": [ { "id": "F1RGL9", "url": "https://omabrowser.org/oma/group/F1RGL9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80XH4-1", "protein_name": "Sialate:O-sulfotransferase 1", "gene_name": "Wscd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKPFFRLQKFLRRTQFLLLFLTAAYLMTGSLLLLQRARVALPQALRAPGSLQALPVATVALGVGLLDGRSLRDPHSSPDLLLDVDTLRSPLARLPPGIRWPRRNRSSLRRRWLHHLTSDPQGPPTLSPEASGPANHNRGNYLGCFSEEGQERTLKGAVFYDLRKMTVSHCQDACAERSYVYAGLEAGAECYCGNRLPATRVSLKECNQECKGEKGSMCGAVRRLSVYSVGLQQPGSKKRRTATYRGCFPLPENVTHTFSSSMTQANMTVETCSGFCSQKEFPLAILRGWDCYCAYPTPQFSLRDAVDGALCSQAPETQGLPGYCEVYQTPVQDTRCTDRKFLPDKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKGFKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAPDRNWKSKEWPEFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRHSLVPTLREMVAFLNVSVSEERLLCVENNKEGSFRRRGRRPHDQEPFTPEMKDLINGYIRTVDQALRDHNWAGLPREYVPR", "length": 572 }, "evidence": [ { "id": "F1RGL9", "url": "https://omabrowser.org/oma/group/F1RGL9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sulfotransferase activity", "id": "GO:0008146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008146", "evidence": [ { "database": "UniProtKB", "id": "F1RGL9", "url": "https://www.uniprot.org/uniprotkb/F1RGL9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1RGL9", "url": "https://www.uniprot.org/uniprotkb/F1RGL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RGL9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 575, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RGL9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RGL9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGL9" }, { "id": "PS51212", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51212" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WSC", "eco_id": "ECO_0000259", "start_pos": 142, "end_pos": 234, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 301 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 509, "end_pos": 511 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"XP_003131926", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131926", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RGM1", "url": "https://www.uniprot.org/uniprotkb/F1RGM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGM1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRWPSVGVSMRRRSLQNQEQLEESEVLQPAVSHPDTSSGALGSLCRQFQRRLPLRAVSLNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVKARRRKRGAQKGSSPLARSLSHRSSQLSGAAPACSTLGPWDPRAVPRRRSRREAAFRSPYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD", "length": 228, "header": "tr|F1RGM1-1|F1RGM1_PIG Isoform 1 of PICALM interacting mitotic regulator OS=Sus scrofa OX=9823 GN=PIMREG PE=4 SV=2 CANONICAL=F1RGM1-1" }, "isoforms": [ { "isoform_ac": "F1RGM1-1", "url": "https://www.uniprot.org/uniprotkb/F1RGM1/entry", "sequence": { "sequence": "MSSRWPSVGVSMRRRSLQNQEQLEESEVLQPAVSHPDTSSGALGSLCRQFQRRLPLRAVSLNLGAGPSWKRLETPEPGQQGLQAAARSAKNALGAMSQRFQESCHSGTKWLVETQVKARRRKRGAQKGSSPLARSLSHRSSQLSGAAPACSTLGPWDPRAVPRRRSRREAAFRSPYSSAEPLCSPSESDSDLEPVGAGIQHLQKLSQELEEAIVAEESGDMTVSLIRD", "length": 228, "header": "tr|F1RGM1-1|F1RGM1_PIG Isoform 1 of PICALM interacting mitotic regulator OS=Sus scrofa OX=9823 GN=PIMREG PE=4 SV=2 CANONICAL=F1RGM1-1" }, "locus": { "chromosome": "12", "start_pos": 50902577, "end_pos": 50899452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019470.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019470.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018952.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018952.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGM1", "url": "https://www.uniprot.org/uniprotkb/F1RGM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521819", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521819", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F7EXP2-1", "protein_name": "PICALM interacting mitotic regulator like 1", "gene_name": 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"ENSSSCG00000006547", "url": "https://www.ensembl.org/id/ENSSSCG00000006547" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006547", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006547", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10391", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10391", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152691", "url": "https://www.ncbi.nlm.nih.gov/gene/100152691", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152691", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152691", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WFKEFPM", "url": "https://omabrowser.org/oma/group/WFKEFPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGM4", "url": "https://www.orthodb.org/?gene=F1RGM4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15127", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15127", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15127:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15127:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929477", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929477", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RGM4", "url": "https://www.uniprot.org/uniprotkb/F1RGM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGM4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQWPPAPGASLCLGWASSLACSAATTLLSRAGWAPVMAAKWFKEFPLNLKTVSERAKPGGGAGGKLRKNSEAGGAGPAPGKGRKNSAAELGSGRAGVGPPKDSRLSRDSLQGLIQAAAGKGRKNSRAAEEEPHRGAAKSTGCSTYINRLIKVDTQEKNGKTNYPSSSSSSSSSSSSSSSASSSPSSLGPELDKGKIIKQQDTVIILEDYADPYDAKRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDSPCEPGENGLKPEALAKRRGSKELAGKPPQLYDTPYEPAAEGVPRAEAPERKARPPDGHSRLPQDDERPAAEYEQPWEWKKEQIVRALSVQFEGSERPSIKEESVRQHHRQKSWTQKILKPSLSDHSEGERVDPALPLEKQPWYHGAITRAEAESRLQPCKEAGYLVRNSESGTSRYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYYSNEKLPFKGAEHMTLLYPVHSKLH", "length": 506, "header": "tr|F1RGM4-1|F1RGM4_PIG Isoform 1 of SH2 domain-containing adapter protein E OS=Sus scrofa OX=9823 GN=SHE PE=4 SV=3 CANONICAL=F1RGM4-1" }, "isoforms": [ { "isoform_ac": "F1RGM4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGM4/entry", "sequence": { "sequence": "MQWPPAPGASLCLGWASSLACSAATTLLSRAGWAPVMAAKWFKEFPLNLKTVSERAKPGGGAGGKLRKNSEAGGAGPAPGKGRKNSAAELGSGRAGVGPPKDSRLSRDSLQGLIQAAAGKGRKNSRAAEEEPHRGAAKSTGCSTYINRLIKVDTQEKNGKTNYPSSSSSSSSSSSSSSSASSSPSSLGPELDKGKIIKQQDTVIILEDYADPYDAKRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDSPCEPGENGLKPEALAKRRGSKELAGKPPQLYDTPYEPAAEGVPRAEAPERKARPPDGHSRLPQDDERPAAEYEQPWEWKKEQIVRALSVQFEGSERPSIKEESVRQHHRQKSWTQKILKPSLSDHSEGERVDPALPLEKQPWYHGAITRAEAESRLQPCKEAGYLVRNSESGTSRYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYYSNEKLPFKGAEHMTLLYPVHSKLH", "length": 506, "header": "tr|F1RGM4-1|F1RGM4_PIG Isoform 1 of SH2 domain-containing adapter protein E OS=Sus scrofa OX=9823 GN=SHE PE=4 SV=3 CANONICAL=F1RGM4-1" }, "locus": { "chromosome": "4", "start_pos": 95303790, "end_pos": 95285016, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007172.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007172.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006979.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006979.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGM4", "url": "https://www.uniprot.org/uniprotkb/F1RGM4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152691", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152691", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5Y6C5-1", "protein_name": "SH2 domain-containing adapter protein E", "gene_name": "She", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRRPPAPGAPWCLGWASSLVCSAASTLPGPLMAAKWFKEFPLTLKTASERARPGGAGGKPRKNSETGSAAPTPGKGRKNSAAELGGSRTGSGPPKDSRLSRDSLQGLIQAAAGKGRKNSRVTTTATASASATTTEEEPHRGAVAKSAGCSTYISRLIKVDTQEKNGKSIYPGGGSTSSSSSSSSSASSSPSSLGPELDKTKIMRQQDTVIILEDYADPYDAKRTKGQRDAERVGENDGYMEPYDAQQMITAASRIGNEEKAVGLKVKRLGQKTRLWPQTAWTPDLVSEIRRRGSKDPLVKALQLLDGPCEPGETMKVEATAKRRSSKDLLGKPPQLYDTPYEPSEGDLRAAEVKARPADGRLPEEDDRPAAEYEQPWEWKREQIARALSVQFEGSDRSPGREEAGRPQHWQKTLKPTLSDHGDGEKVDPGLALEKQPWYHGSISRAEAESRLQPCKEAGYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDSRYTLNQTSAVFDSIPEVVHYYSTAKLPFKGAEHMTLLHPVHKLH", "length": 537 }, "evidence": [ { "id": "F1RGM4", "url": "https://omabrowser.org/oma/group/F1RGM4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N7A7-1", "protein_name": "SH2 domain-containing adapter protein E", "gene_name": "SHE", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQWPPVPGASPCLSWASSLACSAATTLLSRAGRAPLMAAKWFKEFPLNLKTVSERAKPGGGGGGKLRKNSETGGSGPAPGKGRKNSAAELGSGRAGVGPAKDSRLSRDSLQGLIQAAAGKGRKNSRATEEEPHRGAAKSSGCSTYINRLIKVDTQEKNGKSNYPSSSSSSSSSSSSSSSASSSPSSLGPELDKGKIIKQQDTVIILEDYADPYDAKRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDSPCEPGENGPKPEALTKRRSSKELLGKSPQLYDTPYEPAAEAGPFAAEGPERKARLPPDSHGRLPQDDERPAAEYEQPWEWKKEQIVRALSVQFEGSERPSVKEEAARQHHRQKSWTQKILKPALTDHSEGERVDPALPLEKQPWYHGAITRAEAESRLQSCKEAAYLVRNSESGTSRYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFGSIPEVVHYYSSEKLPFKGAEHMTLLYPVHSKLHQGPASKSPSGASHT", "length": 522 }, "evidence": [ { "id": "F1RGM4", "url": "https://omabrowser.org/oma/group/F1RGM4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VZ18-1", "protein_name": "SH2 domain-containing adapter protein E", "gene_name": "SHE", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQWSPTPGASACLGWASSLACSTAPTLLGRAGRGPLMAAKWFKEFPLNLKTVSERAKPGGGGGKLRKNSEAGGAGPGPGKGRKNSAAELGSGRAGVGPKDSRLSRDSLQGLIQAAAGKGRKNSRATEEEPHRGATKSSGCSTYINRLIKVDTQEKNGKSNYPSSSSSSSSSSSSASSSPSSLGPELDKGKIIKQQETVIILEDYADPYDAKRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDSPCEPADGGLKSETLAKRRSSKDLLGKPPQLYDTPYEPAEGGPRAEGKARPPDSRLPENDERPAAEYEQPWEWKKEQIVRALSVQFEGAERPSFREETVRQHHRQKSWTQKILKPALSDHSEGEKVDPGLPLEKQPWYHGAISRAEAESRLQPCKEAGYLVRNSESGNSRYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYYSNEKLPFKGAEHMTLLYPVHSKLH", "length": 495 }, "evidence": [ { "id": "F1RGM4", "url": "https://omabrowser.org/oma/group/F1RGM4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BSD5-1", "protein_name": "SH2 domain-containing adapter protein E", "gene_name": "She", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRRPPAPGAPRCLSWASSLFCSAASTLPGPLMAAKWFKEFPLTLKTASERARPGGAGGKPRKNSETGGAAPTPGKGRKNSAAELGASKASSGPPKDSRLSRDSLQGLIQAAAGKGRKNSRVTATATEEEPHRGAVTKSAGCSTYISRLIKVDTQEKNGKSAYPGGGSTSSSSSSSSSASSSPSSLGPELDKAKIMRQQDTVIILEDYADPYDAKRTKGQRDAERVGENDGYMEPYDAQQMITEIRRRGSKDPLVKALQLLDGPSEPGETVKVEATAKRRSSKDLLGKPPQLYDTPYEPSEGGQRVAEVKTRPADSRLPEEDDRPAAEYEQPWEWKREQIARALSVQFEGSDRPPGREDAGRPHHWQKTLKPTLSDHGDGEKVDPGLALEKQPWYHGSISRAEAESRLQPCKEAAYLVRNSESGNSKYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVVHYYSNAKLPFKGAEHMTLLHPVHKLH", "length": 492 }, "evidence": [ { "id": "F1RGM4", "url": "https://omabrowser.org/oma/group/F1RGM4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "F1RGM4", "url": "https://www.uniprot.org/uniprotkb/F1RGM4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RGM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGM4" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 406, "end_pos": 501, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 466, "end_pos": 468 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGM5-1", "uniprot_ac": "F1RGM5", "uniprot_id": "F1RGM5_PIG", "mass": { "chemical_mass": 37612.0, "monoisotopic_mass": 37612.0 }, "refseq": {}, "gene_names": [ { "name": "TDRD10", "type": "recommended", "evidence": [ { "id": "F1RGM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGM5" } ] } ], "protein_names": [ { "name": "Tudor domain containing 10", "type": "synonym", "evidence": [ { "id": "F1RGM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGM5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGM5", "url": "https://www.uniprot.org/uniprotkb/F1RGM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TDRD10", "url": "https://www.uniprot.org/uniprotkb/F1RGM5", "locus": { "chromosome": "4", "start_pos": 95231252, "end_pos": 95284502, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006546", "url": "https://www.ensembl.org/id/ENSSSCG00000006546" } ] } } ], "crossref": [ { "id": "F1RGM5", "url": "https://alphafold.ebi.ac.uk/entry/F1RGM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006546", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006546", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21617", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21617", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035437", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035437", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050502", 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"database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027973", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027973", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EVVQFHS", "url": "https://omabrowser.org/oma/group/EVVQFHS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR28366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28366:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28366:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15375", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15375", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RGS9", "url": "https://www.uniprot.org/uniprotkb/F1RGS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGS9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQDPGLPTPASPGSQTLLDALLQNLYDFGETEDEAEQKRVRKKRESKKRDMGTPAASGTEPAPLPEALGRGQRKNASTFFKELREELHRAPAGTPSDLPPGPFGSDAAESPSSLKNKREPVEVVEFHSRNTKRKQKPDQDEHIKTKTSILEKDVNVQEFNLEKARLEVHRFGITGYGKGKERVLEQERAIMLGAKPPKNSYVNYKVLQEQIKEKKAAKEEEKRMAQETDIFKRKKRKGQEDRKSKKKKSAPSILSSGRIGQSKYICFFLFWPPHDIRSSWDQI", "length": 284, "header": "tr|F1RGS9-1|F1RGS9_PIG Isoform 1 of Chromosome 14 C1orf131 homolog OS=Sus scrofa OX=9823 GN=FSAF1 PE=4 SV=2 CANONICAL=F1RGS9-1" }, "isoforms": [ { "isoform_ac": "F1RGS9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGS9/entry", "sequence": { "sequence": "MAQDPGLPTPASPGSQTLLDALLQNLYDFGETEDEAEQKRVRKKRESKKRDMGTPAASGTEPAPLPEALGRGQRKNASTFFKELREELHRAPAGTPSDLPPGPFGSDAAESPSSLKNKREPVEVVEFHSRNTKRKQKPDQDEHIKTKTSILEKDVNVQEFNLEKARLEVHRFGITGYGKGKERVLEQERAIMLGAKPPKNSYVNYKVLQEQIKEKKAAKEEEKRMAQETDIFKRKKRKGQEDRKSKKKKSAPSILSSGRIGQSKYICFFLFWPPHDIRSSWDQI", "length": 284, "header": "tr|F1RGS9-1|F1RGS9_PIG Isoform 1 of Chromosome 14 C1orf131 homolog OS=Sus scrofa OX=9823 GN=FSAF1 PE=4 SV=2 CANONICAL=F1RGS9-1" }, "locus": { "chromosome": "14", "start_pos": 59257272, "end_pos": 59240574, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011142.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011142.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010853.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010853.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 95, "start_aa": "Thr", "end_pos": 95, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr95", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 9, "start_aa": "Thr", "end_pos": 9, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr9", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGS9", "url": "https://www.uniprot.org/uniprotkb/F1RGS9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XYU2-1", "protein_name": "Chromosome 1 open reading frame 131", "gene_name": "C1orf131", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSREPCRRLEAVLDALYDLGDEPGVQGAAGDGEAEEWEEEEEKSREEQPTAPSDAGGAEGGRRGARDFFGGLREEMSRTAPPPLPSSAPPPAQVEVVVFRARKRKARPGPAPAAPGGGTQTRTVTEKKNVNKQEFNFEKARLEVHRFGITGYEKQEQRIWERERAIMLGAKPPRKEHINYKKYQEKMKVNKTTKDDDKGQVHKGDSLKKKKKDLKERKAKRKRSVPSIWPAGQVGKFRDGTLILQSGDIKKIKSTKVIK", "length": 260 }, "evidence": [ { "id": "F1RGS9", "url": "https://omabrowser.org/oma/group/F1RGS9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3KRF3-1", "protein_name": "40S small subunit processome assembly factor 1", "gene_name": "Fsaf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAERELDSSELPGSEALLDAVLRTLYDLGETEGETEQKRTRKKKEKKRDSETVADRAAEPLPLPASPGRDQRKSASSFFKKLREELQSAPAAPSEVPAATTAVSLFPLENDSKLVEVVEFHSRSEKRKPKSEEDKPAKNKTKVLEKDVVIQEFNLEKARLEVHRFGITGYGKGKERVLERERAIMLGAKPPKNTYVNYKVLQEQIKEKRTSMEEEKRAAQETDIFKRKKRKGRSQEDRRSKKLAPSILSSGRAAQVGKFRNGTLILSPADIKKINSSRVSK", "length": 282 }, "evidence": [ { "id": "F1RGS9", "url": "https://omabrowser.org/oma/group/F1RGS9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CIL4-1", "protein_name": "40S small subunit processome assembly factor 1", "gene_name": "Fsaf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAEHDSDSVEPPGSEALLDAVLRTLYDLGETEGETEQKRIRKKKAKKRDSETIEDVAVEPLPLPGSPVRGQKKSASSFFQKLREELQSAPAAPSEVPVTTAVSLSPPKNGSKLVEVVEFQSKSKKRKLKSDEDEPAKNKTKVVKKDVDIQEFNLEKARLEVHRFGITGYGKGKERVLERERAIMLGAKPPKNTYVNYKVLQKQIKEKKIAVEEEKRAARETDIFKKKKKKGRGQEDRRSKKSAPSILSSGQVGQVGKFRNGTLILSPTDIKKINSSRVAK", "length": 281 }, "evidence": [ { "id": "F1RGS9", "url": "https://omabrowser.org/oma/group/F1RGS9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NDD1-1", "protein_name": "40S small subunit processome assembly factor 1", "gene_name": "FSAF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRVDSSADPTMSQEQGPGSSTPPSSPTLLDALLQNLYDFGGTEGETEQKKIIKKRENKKRDVMASAALAAEPSPLPGSLIRGQRKSASSFFKELREERHCAPSGTPTGPEILAAAVPPSSLKNNREQVEVVEFHSNKKRKLTPDHNKNTKQANPSVLERDVDTQEFNLEKARLEVHRFGITGYGKGKERILEQERAIMLGAKPPKKSYVNYKVLQEQIKEKKAAKEEEKRLAQETDIFKKKKRKGQEDRKSKKKSAPSILSNGRIGQVGKFKNGTLILSPVDIKKINSSRVAK", "length": 293 }, "evidence": [ { "id": "F1RGS9", "url": "https://omabrowser.org/oma/group/F1RGS9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1RGS9", "url": "https://www.uniprot.org/uniprotkb/F1RGS9" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1RGS9", "url": "https://www.uniprot.org/uniprotkb/F1RGS9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "F1RGS9", "url": "https://www.uniprot.org/uniprotkb/F1RGS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], 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], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF05024", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-162710", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162710", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ANR0", "url": "https://www.uniprot.org/uniprotkb/A0A287ANR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGT9", "url": "https://www.uniprot.org/uniprotkb/F1RGT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGT9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLKAFFPTCCASADSGLLVGRWVPEQSSAVVLAVVHFPFIPIQVKELLAQVQQAGRVGLAVLGTWCHRRQEPEESLGHFLEGLGAIFSHEPWLQLCREPGSKLWSCKATRWQAPPGPAAPGEDQIMLIFYDQRKVLLSQLHPPAVLLDRQAGDAPASVGDLAAVFDTVARSEPLFQSDRFGEGPVRLSHWQSEGVEASILVELAKWAAGPVCLLLASLLSLISAASACRVFRLWPLSFIWSKLSTCEQLRRRLEQLTLIFSTQKARSPAQLMRKANTLVSVLLDVTLGLLLLSWLHRKDRIGQLADALIPVADHVAEELQDLLQWLMGAPAGLKMNRALDQVLGRFFLYHIHLWISYIHLMAPFIEHILWHVGLSACLGLTVALSILSDTIALLTFHIYCFYVYGARLYCLKICGLSSLWRLFRGKKWNVLRQRVDSCSYDLDQLFIGTLLFTMLVFLLPTTALYYLVFTLLRLLVVTVQGLIHLLADLINSLPLYSLGLRLCRPYRLAAGVKFRVLEREAGRPLRLLMQINPLPYSRVLNTYRLPSCGCHPQHSWGSLCRKLFFGELIYPWRQRGDKQD", "length": 581, "header": "tr|F1RGT9-1|F1RGT9_PIG Isoform 1 of Phosphatidylinositol glycan anchor biosynthesis class Q OS=Sus scrofa OX=9823 GN=PIGQ PE=4 SV=3 CANONICAL=F1RGT9-1" }, "isoforms": [ { "isoform_ac": "A0A287ANR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANR0/entry", "sequence": { "sequence": "MVLKAFFPTCCASADSGLLVGRWVPEQSSAVVLAVVHFPFIPIQVKELLAQVQQAGRVGLAVLGTWCHRRQEPEESLGHFLEGLGAIFSHEPWLQLCREPGSKLWSCKATRWQAPPGPAAPGEDQIMLIFYDQRKVLLSQLHPPAVLLDRQAGDAPASVGDLAAVFDTVARSEPLFQSDRFGEGPVRLSHWQSEGVEASILVELAKWAAGPVCLLLASLLSLISAASACRVFRLWPLSFIWSKLSTCEQLRRRLEQLTLIFSTQKARSPAQLMRCGPALGSPRGPSLYPACPCW", "length": 294, "header": "tr|A0A287ANR0-1|A0A287ANR0_PIG Computationally mapped isoform of Phosphatidylinositol glycan anchor biosynthesis class Q OS=Sus scrofa OX=9823 GN=PIGQ PE=4 SV=2 CANONICAL=F1RGT9-1" }, "locus": { "chromosome": "3", "start_pos": 41173525, "end_pos": 41171104, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042029.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042029.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045536.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045536.2" } ] } }, { "isoform_ac": "F1RGT9-1", "url": "https://www.uniprot.org/uniprotkb/F1RGT9/entry", "sequence": { "sequence": 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"database": "Ensembl Peptide", "id": "ENSSSCP00000008533.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008533.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGT9", "url": "https://www.uniprot.org/uniprotkb/F1RGT9" } ], "reference": [ { "type": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RGT9", "url": "https://www.uniprot.org/uniprotkb/F1RGT9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "F1RGT9", "url": "https://www.uniprot.org/uniprotkb/F1RGT9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol N-acetylglucosaminyltransferase activity", "id": "GO:0017176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017176", "evidence": [ { "database": "UniProtKB", "id": "F1RGT9", "url": "https://www.uniprot.org/uniprotkb/F1RGT9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"ENSSSCT00000008749.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008749.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008525.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008525.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGV7", "url": "https://www.uniprot.org/uniprotkb/F1RGV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BI41-1", "protein_name": "Post-GPI attachment to proteins factor 6 isoform X1", "gene_name": "pgap6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKYFVLCLLLYATAGCFADDLTYLNGFYSKTPQRLSKYSWFGNVRLHHFRVPEDAVLVRWLLTVSRGSGLNCGNQNITVHFRAGAPPVINPIQTAFPNSTSASLAHNLTLIVPSGQSSNVTLFNVTHPKPGDWFLAAHLPKDDGKIEQQGLPSCSYLFQAQMFSRRASDLPILQYNIPLSQTLTASPALFKVFVPEFSSSLDVFISNCSANVGNDCGLSITVGSSTLRQGSEVKQNCSGLKICHASVLIPPWNTWLLVTVETNQPNTSVPFYIAANVTVGCKPLSSSSDFNAAAFIRTIIAPQSNSSGVFGNSSTSAKNQSGLRSNSSEPMCMRSPSVFRDEQDVLSFRYIVSGNNLTVTSDLPTVLALEHSPGDSGGTLVVQLQLNTSSLIGGFARVKACLTPSAPVLQLNRSQTCATGFAQGYTLNVSSSESNALLRIPFPDAENWYLSLQTVCNDSVDCTNASATVSASVSVSACIDECGPYGECRLLRTYNYLYGACVCKAGWQGWGCTDGVSALSYSRQMTAALLLTLSNFFFIPPIIVALYRGYLIEAAIYLFTMFFSTFYHACDQPGVTVMCIMDYDTLQFCDFLGSVVSVWVTIVCMARLQEPIKYLLFMMGTLVISMAMQLDRRGLWNLLGPVLFALVIMVTSWVYRGVKRHQCYPPLWRRWVLFLLPGIVSALIGVCVYVFAQTDSNYYYTHSIWHVMVATSVVFLLPPREKHVPPWGWTNKICSYSRCKNEKVQLYTVT", "length": 751 }, "evidence": [ { "id": "F1RGV7", "url": "https://omabrowser.org/oma/group/F1RGV7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AAA9S2N6-1", "protein_name": "Post-GPI attachment to proteins 6", "gene_name": "PGAP6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGGAAEGRCCPTPQLRGSWAQRGEGTVKVTPRTSPELAVGQCFLLSSPGTSLVTPVHSTGAGLFLEDSRLVSEQFSQAPQKLAFYNWYGSARLFHFRVPPDTVLLHWLLQVTRGSGPTCNNVETTVYFRYGAPPVINPLGTSFANNTSVQPSFLLRMLQDNASVNVSYPAPGDWFVAAHLPPSSHKIEVKDFIPTCAYIFQPDMLVVRVVEMSILEPDVPLPLVLLSQPSYLKVFVPKHTQELRLELQGCVSNGSLGCPVHLTVGSATLPGNFQKVLTCSDPTTACRLLLPSPPWERWLQVTAKSLAGPRVLVTFSAVAALTACRPWTANLQRLLQSSPNQSSNASTGPPPLSPNTQDLDQSGEAGSGAFCFRSFPILREDMDVVSVRFRPLDRASVLVQSDMPSVMKLHLNTGMDSGGSLSISVSVNQTVIASNTSVVACVTAGSPFLSFNTSLNCTTAFFQGYPLSLSASSPTANLSIPYPETDNWYLSLQVLCPERPEECMQPSVLVETTLYLVPCLNDCGPYGQCLLLRRHGYLYAGCSCRAGWRGWSCTDNSTAQTLAQQKVATLLLTLSNLMFLAPIAISVHRCLLVEASVYAYTMFFSTFYHACDQPGDAVLCILNYDTLQYCDFLGSGVSIWVTVLCMARLKASLKYVLFILGALVFAMSLQLDRRAAWNTTGPCLFAIVVMVTMWVYRCGRRRHCYPPSWQRWVFYLLPGLSMAALALTIYVSMMTSENYYYTHSIWHMLLAGSAAFLLPPREQHAEPWACAQKLTCHYEICKNHRDELYTVT", "length": 793 }, "evidence": [ { "id": "F1RGV7", "url": "https://omabrowser.org/oma/group/F1RGV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZKI8-1", "protein_name": "Post-GPI attachment to proteins 6", "gene_name": "Pgap6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVGAGSTARVAAAGSLLLLLLLLARPPPAAARNIKESEAGLVSEHFSQAPQKLSFYSWYGSTRLFHFRVPPDTVLLRWLLHVSQGGPSCADVEITVHFRYGAPPVINPLGTSFPDDTLTHASFHIKTLLSTMLLGNTSVNISHPAPGDWFLVAHLPPSSQKIQVKGFVPTCAYIFQPDMLVMRVVEVSILEPDIPLPQTLLSHPSYLKIFVPEYTQELRLELQGCVSSVSPGCPVRLTAGVTTLPRNFQRVLTCTGLAPFCHLLLSSPPWGRWLQVTVESLAEPHVTVGFTAKAAFTACRPWSVTFHHLIQNNPNQTYDTSAVQLSQSAAHWDLGRSGRSSRVDGGPFCLLNYPVLREDTDVVSVHFQPLNGAFVLVHSNMPSVMQLRLDTGMDSGGSFIIVLRANKSEVTNGTSVAACVNVASPFLSFNASLNCTTAFFQGYPMFLSASSHMANLIIPYPETDNWYLSLQLVCPESPEDCEQAAVRVETVLYLVPCLNDCGPYGQCLLLRRYGYLYAGCSCKAGWRGWSCTDNSTAQTAAQQRAAALLLTLSNLMFLAPIAISVHRSFLVEASVYFYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGASTWVTILCMARLKTILKQVLLVLGLLVIAMSLQMDRRGIWNLMGPCVFAFVIMAFMWIYRCGHRRQCYPTSWQRWVFYLLPGISMAFVGIAMYTSMMTSDNYYYTHSIWHILLAGSVAFLLPPREEKAGSWACLQKFPCHYQICRNDRDELYTVT", "length": 772 }, "evidence": [ { "id": "F1RGV7", "url": "https://omabrowser.org/oma/group/F1RGV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ESN3-1", "protein_name": 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"https://omabrowser.org/oma/group/F1RGV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCN3-1", "protein_name": "Post-GPI attachment to proteins factor 6", "gene_name": "PGAP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRAGTGTGGEAVAAVVAGPLLLLLLARPPPASAGYSGKSEVGLVSEHFSQAPQRLSFYSWYGSARLFRFRVPPDAVLLRWLLQVSRESGAACTDAEITVHFRSGAPPVINPLGTSFPDDTAVQPSFQVGVPLSTTPRSNASVNVSHPAPGDWFVAAHLPPSSQKIELKGLAPTCAYVFQPELLVTRVVEISIMEPDVPLPQTLLSHPSYLKVFVPDYTRELLLELRDCVSNGSLGCPVRLTVGPVTLPSNFQKVLTCTGAPWPCRLLLPSPPWDRWLQVTAESLVGPLGTVAFSAVAALTACRPRSVTIQPLLQSSQNQSFNASSGLLSPSPDHQDLGRSGRVDRSPFCLTNYPVTREDMDVVSVHFQPLDRVSVRVCSDTPSVMRLRLNTGMDSGGSLTISLRANKTEMRNETVVVACVNAASPFLGFNTSLNCTTAFFQGYPLSLSAWSRRANLIIPYPETDNWYLSLQLMCPENAEDCEQAVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYLYASCSCKAGWRGWSCTDNSTAQTVAQQRAATLLLTLSNLMFLAPIAVSVRRFFLVEASVYAYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGAAIWVTILCMARLKTVLKYVLFLLGTLVIAMSLQLDRRGMWNMLGPCLFAFVIMASMWAYRCGHRRQCYPTSWQRWAFYLLPGVSMASVGIAIYTSMMTSDNYYYTHSIWHILLAGSAALLLPPPDQPAEPWACSQKFPCHYQICKNDREELYAVT", "length": 771 }, "evidence": [ { "id": "F1RGV7", "url": "https://omabrowser.org/oma/group/F1RGV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RGV7", "url": "https://www.uniprot.org/uniprotkb/F1RGV7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RGV7", "url": "https://www.uniprot.org/uniprotkb/F1RGV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": 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"https://prosite.expasy.org/PS00022" }, { "id": "PS01186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 421, "end_pos": 432, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 160, "end_pos": 162 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 331, "end_pos": 333 }, { "start_pos": 335, "end_pos": 337 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 44, "end_pos": 46 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RGW3-1", "uniprot_ac": "F1RGW3", "uniprot_id": "F1RGW3_PIG", "mass": { "chemical_mass": 9415.0, "monoisotopic_mass": 9415.0 }, "refseq": {}, "gene_names": [ { "name": "COA6", "type": "recommended", "evidence": [ { "id": "F1RGW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGW3" } ] } ], "protein_names": [ { "name": "Cytochrome c oxidase assembly factor 6 homolog", "type": "recommended", "evidence": [ { "id": "F1RGW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RGW3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in the maturation of the mitochondrial respiratory chain complex IV subunit MT-CO2/COX2. Thereby, may regulate early steps of complex IV assembly. Mitochondrial respiratory chain complex IV or cytochrome c oxidase is the component of the respiratory chain that catalyzes the transfer of electrons from intermembrane space cytochrome c to molecular oxygen in the matrix and as a consequence contributes to the proton gradient involved in mitochondrial ATP synthesis. May also be required for efficient formation of respiratory supercomplexes comprised of complexes III and IV.", "evidence": [ { "database": "UniProtKB", "id": "F1RGW3", "url": "https://www.uniprot.org/uniprotkb/F1RGW3#function" }, { "database": "UniProtKB", "id": "ARBA00060319", "url": "https://www.uniprot.org/uniprotkb/ARBA00060319#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RGW3", "url": "https://www.uniprot.org/uniprotkb/F1RGW3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COA6", "url": "https://www.uniprot.org/uniprotkb/F1RGW3", "locus": {} } ], "crossref": [ { "id": "F1RGW3", "url": "https://alphafold.ebi.ac.uk/entry/F1RGW3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010161", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010161", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00926", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00926", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512926", "url": "https://www.ncbi.nlm.nih.gov/gene/100512926", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042289", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042289", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RGW3", "url": "https://www.orthodb.org/?gene=F1RGW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46690:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46690:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RGW3", "url": "https://www.uniprot.org/uniprotkb/F1RGW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGW3-1", "url": "https://www.uniprot.org/uniprotkb/F1RGW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPSMKERQACWGARDAYWKCLDENTEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGEFQPSRTTEKS", "length": 79, "header": "tr|F1RGW3-1|F1RGW3_PIG Isoform 1 of Cytochrome c oxidase assembly factor 6 homolog OS=Sus scrofa OX=9823 GN=COA6 PE=3 SV=2 CANONICAL=F1RGW3-1" }, "isoforms": [ { "isoform_ac": "F1RGW3-1", "url": "https://www.uniprot.org/uniprotkb/F1RGW3/entry", "sequence": { "sequence": "MAAPSMKERQACWGARDAYWKCLDENTEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGEFQPSRTTEKS", "length": 79, "header": "tr|F1RGW3-1|F1RGW3_PIG Isoform 1 of Cytochrome c oxidase assembly factor 6 homolog OS=Sus scrofa OX=9823 GN=COA6 PE=3 SV=2 CANONICAL=F1RGW3-1" }, "locus": { "chromosome": "14", "start_pos": 56758179, "end_pos": 56751391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011126.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011126.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010838.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010838.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGW3", "url": "https://www.uniprot.org/uniprotkb/F1RGW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": 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"id": "IPR050717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106509714", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106509714", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GQTREPM", "url": "https://omabrowser.org/oma/group/GQTREPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RGZ4", "url": "https://www.orthodb.org/?gene=F1RGZ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013851190", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851190", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RGZ4", "url": "https://www.uniprot.org/uniprotkb/F1RGZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RGZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPPEPQDQAPGEGEGLLIVKVEDSSWEQDSGQQEDSRDSEACRQRFRQFCYGDAGGPHEAFSQLWELCCRWLRPELRTKEQILELLVLEQFLSVLPVGIQDWVCEQHPGSGEEAVALVENLQKQPVKAWAQDVPSEEAEREAAVQGSRAKAPPQKAGAQSRPPLPWELHGRGAQQPALKEARPRETTDTRFSSGGPVTFGDIPFYFSREEWGSLDPSQRDLFWDIKRENSRNVAPGLGFKSPSERPQLEEVVTAIPGQAVGDVAASWRPEAAEAWEREARPGAPRGRAAGARRGRPPTRRRQLRDLVAEKPHSCGQCGKRFRWGSDLARHQRTHTGEKPHKCQECDKSFRSSSDLVRHQGVHTGQKPFSCSECGKSFSRSAYLADHQRIHTGEKPFGCSDCGKSFSLRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQSLHAKMAQPVG", "length": 456, "header": "tr|F1RGZ4-1|F1RGZ4_PIG Isoform 1 of Zinc finger protein 213 OS=Sus scrofa OX=9823 GN=ZNF213 PE=3 SV=3 CANONICAL=F1RGZ4-1" }, "isoforms": [ { "isoform_ac": "F1RGZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RGZ4/entry", "sequence": { "sequence": "MATPPEPQDQAPGEGEGLLIVKVEDSSWEQDSGQQEDSRDSEACRQRFRQFCYGDAGGPHEAFSQLWELCCRWLRPELRTKEQILELLVLEQFLSVLPVGIQDWVCEQHPGSGEEAVALVENLQKQPVKAWAQDVPSEEAEREAAVQGSRAKAPPQKAGAQSRPPLPWELHGRGAQQPALKEARPRETTDTRFSSGGPVTFGDIPFYFSREEWGSLDPSQRDLFWDIKRENSRNVAPGLGFKSPSERPQLEEVVTAIPGQAVGDVAASWRPEAAEAWEREARPGAPRGRAAGARRGRPPTRRRQLRDLVAEKPHSCGQCGKRFRWGSDLARHQRTHTGEKPHKCQECDKSFRSSSDLVRHQGVHTGQKPFSCSECGKSFSRSAYLADHQRIHTGEKPFGCSDCGKSFSLRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQSLHAKMAQPVG", "length": 456, "header": "tr|F1RGZ4-1|F1RGZ4_PIG Isoform 1 of Zinc finger protein 213 OS=Sus scrofa OX=9823 GN=ZNF213 PE=3 SV=3 CANONICAL=F1RGZ4-1" }, "locus": { "chromosome": "3", "start_pos": 39077929, "end_pos": 39074456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008730.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008730.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008506.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008506.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RGZ4", "url": "https://www.uniprot.org/uniprotkb/F1RGZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106509714", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106509714", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ADN5-1", "protein_name": "Zinc finger protein 213", "gene_name": "Zfp213", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASFQELQDPAPGEEEGLMIVKVEDCSWEQEPAQPVNSRESEACRQRFRQFCYRDAGGPHEAFSQLWELCCRWLRPELNSKEQILELLVLEQFLAVLPGEIQARVRTQHLGSGEEAVALVEDIQNQSLKTWPQDELSEVEPKAAVQEFQATASPKKAGVQKQLCASQEQHSHAQPPVLKERRTGEMLDVCFASEVDLPGRPELGHISPFQKSVALGDIPFYFSREEWSSLGPAQRNLFWDIKRENSRDAALGLGPKSQKPPAEETVTALLGQNEVPMSWKPEEAKTEVWESENPRRTAPDKPVVARRGRPPTRRRQFRNLVTEKPHSCAQCGKRFRWGSDLARHQRTHTGEKPHKCPECDKSFRSSSDLVRHQGVHTGEKPFSCSECGKSFSRSAYLADHQRIHTGEKPFSCTECGKSFSLRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQSLHAKMAQPVG", "length": 468 }, "evidence": [ { "id": "F1RGZ4", "url": "https://omabrowser.org/oma/group/F1RGZ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9QAW0-1", "protein_name": "Zinc finger protein 213", "gene_name": "Zfp213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASLQELQDPAPGEEEGLMIVKVEDCSWEQEPVQPVDSRDSEACRQRFRQFCFRDAGGPHEAFSQLWELCCRWLRPELHSKEQILELLVLEQFLAVLPGEIQAQLQRQHLGSGEEAVALVEDIQNQSLKAWPQDELSEAEPKAAVQGLQATGSPQKTGVQKQLPALQGQRSHAQLPVLKERQTGEVLDGCFDSAVDLPGRPELGRISPFQKSGSLGDIPFYCSREEWSSLDPAQRNLFWNIKRKNSRDAALGLRPKSQKPPAEEAATALLGQTEVPMSWNPEEAETEVWESENPMRTALDPLVGARRGRPPTHRRQFQNLLAEKPHSCAQCGKRFRWGSDLARHQRTHTGEKPHKCPECDKSFRSSSDLVRHQGVHTGEKPFSCSECGKSFSRSAYLADHQRIHTGEKPFSCSECGKSFALRSYLLDHRRVHTGERPFGCGECDKSFKQRAHLIAHQSLHSKMAQPVG", "length": 468 }, "evidence": [ { "id": "F1RGZ4", "url": "https://omabrowser.org/oma/group/F1RGZ4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O14771-1", "protein_name": "Zinc finger 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] }, { "id": "PTHR22574:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22574:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RH17", "url": "https://www.uniprot.org/uniprotkb/F1RH17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH17-1", "url": "https://www.uniprot.org/uniprotkb/F1RH17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPVHQPKPAPGGAGEAGLGGMAERPLFPACPTGRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRLGEVANKVTMGVAASSPALELPDLLLLAGPAKENGCLQLFGLFPLQFVQLFVHDESRRELKVKFRTGRAFYLQLRAPPETRDREFGQWVRLLYRLRFHSAQGAVPFTQAYSALEDEEEDDDEDDYDEDEDLQAMEARLDPQISELWGL", "length": 214, "header": "tr|F1RH17-1|F1RH17_PIG Isoform 1 of Golgi associated RAB2 interactor 5A OS=Sus scrofa OX=9823 GN=GARIN5A PE=3 SV=4 CANONICAL=F1RH17-1" }, 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"database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RH17-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 214, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RH17-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RH17" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RH17", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RH17" }, { "id": "PF12480", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12480" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Golgi associated RAB2 interactor protein-like Rab2B-binding", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 164, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RH52-1", "uniprot_ac": "F1RH52", "uniprot_id": "F1RH52_PIG", "mass": { "chemical_mass": 23277.0, "monoisotopic_mass": 23277.0 }, "refseq": {}, "gene_names": [ { "name": "IZUMO2", "type": "recommended", "evidence": [ { "id": "F1RH52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RH52" } ] } ], "protein_names": [ { "name": "IZUMO family member 2", "type": "synonym", "evidence": [ { "id": "F1RH52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RH52/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RH52", "url": "https://www.uniprot.org/uniprotkb/F1RH52" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IZUMO2", "url": "https://www.uniprot.org/uniprotkb/F1RH52", "locus": { "chromosome": "6", "start_pos": 55059771, "end_pos": 55069429, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003207", "url": "https://www.ensembl.org/id/ENSSSCG00000003207" } ] } } ], "crossref": [ { "id": "F1RH52", "url": "https://alphafold.ebi.ac.uk/entry/F1RH52", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003207", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003207", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029389", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029389", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QPRMALQ", "url": "https://omabrowser.org/oma/group/QPRMALQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47745", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47745", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47745:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47745:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1300645", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300645", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RH52", "url": "https://www.uniprot.org/uniprotkb/F1RH52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RH52-1", "url": "https://www.uniprot.org/uniprotkb/F1RH52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPALALLLLLGLSARRGWGCLQCDLSVLEALSQLRVALIPSRFQVQQLRARAQALLLGMEGPFFRDYALNAFVGRVGIEQLDLVASFIKNQTNSLKVNSLRDRPLLDELVALRERVIKELKKALRSYELKACDPKICLLLKDEVLDCLHCQRISPKCIKENYCFVDGQPRMDLQYQKESGSLRNRAMFGSIISVCLAVLAFGVIVAS", "length": 208, "header": "tr|F1RH52-1|F1RH52_PIG Isoform 1 of IZUMO family member 2 OS=Sus scrofa OX=9823 GN=IZUMO2 PE=3 SV=4 CANONICAL=F1RH52-1" }, "isoforms": [ { "isoform_ac": "F1RH52-1", "url": "https://www.uniprot.org/uniprotkb/F1RH52/entry", "sequence": { "sequence": "MPPALALLLLLGLSARRGWGCLQCDLSVLEALSQLRVALIPSRFQVQQLRARAQALLLGMEGPFFRDYALNAFVGRVGIEQLDLVASFIKNQTNSLKVNSLRDRPLLDELVALRERVIKELKKALRSYELKACDPKICLLLKDEVLDCLHCQRISPKCIKENYCFVDGQPRMDLQYQKESGSLRNRAMFGSIISVCLAVLAFGVIVAS", "length": 208, "header": "tr|F1RH52-1|F1RH52_PIG Isoform 1 of IZUMO family member 2 OS=Sus scrofa OX=9823 GN=IZUMO2 PE=3 SV=4 CANONICAL=F1RH52-1" }, "locus": { "chromosome": "6", "start_pos": 55069392, "end_pos": 55059774, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003562.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003562.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003479.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003479.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RH52", "url": "https://www.uniprot.org/uniprotkb/F1RH52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1300645", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300645", "resource": "Reactome", "description": "Acrosome Reaction and Sperm:Oocyte Membrane Binding" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7G6V5-1", "protein_name": "Izumo sperm-egg fusion protein 2 isoform X1", "gene_name": "Izumo2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPLALALALLCCLGSGGWSCLHCDQSVLHALRQLREATVPKRFHLEGLQARAQALLLGMEGPFFRDYAVNAFVGKVEEDQLEDVATSFKNQTRYIRTSSLTDGPLLEELVNLREHGIKTLKKALKAYEVKACDHKICRFLKEEVLDCLHCKKITPKCIKEKYCYVDGQPRMTLKFQSDSNLRNMVLVGDLVAVGLAILVFLVILIAACTYRRNRKLLLK", "length": 219 }, "evidence": [ { "id": "F1RH52", "url": "https://omabrowser.org/oma/group/F1RH52/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LKX5-1", "protein_name": "IZUMO family member 2", "gene_name": "Izumo2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLALTLVILCGLVGPGGLGCLQCDQSVLEALHQLREAIIPKRFHVEGLQARAQALLLSMEGPFFRDYAMNAFVGKVVLDQLETVVTSFKNQTQYIQANSRTDGPLLEELVSFREHAIKELKKALRDYEIKACDHKTCHSFKEDILDCFYCKKTIAKCVKKKSCFEDGQSRMTLKFQDDRKLRNMVLVGDMVTVGLAILTFLVILIAAYTYRQNRKLLLK", "length": 220 }, "evidence": [ { "id": "F1RH52", "url": "https://omabrowser.org/oma/group/F1RH52/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6UXV1-1", "protein_name": "Izumo sperm-egg fusion protein 2", "gene_name": "IZUMO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLALTLLLLSGLGAPGGWGCLQCDPLVLEALGHLRSALIPSRFQLEQLQARAGAVLMGMEGPFFRDYALNVFVGKVETNQLDLVASFVKNQTQHLMGNSLKDEPLLEELVTLRANVIKEFKKVLISYELKACNPKLCRLLKEEVLDCLHCQRITPKCIHKKYCFVDRQPRVALQYQMDSKYPRNQALLGILISVSLAVFVFVVIVVSACTYRQNRKLLLQ", "length": 221 }, "evidence": [ { "id": "F1RH52", "url": "https://omabrowser.org/oma/group/F1RH52/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DA16-1", "protein_name": "Izumo sperm-egg fusion protein 2", "gene_name": "Izumo2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003347.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003347.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003264.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003264.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr 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"https://www.uniprot.org/uniprotkb/F1RHB3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1RHB3", "url": "https://www.uniprot.org/uniprotkb/F1RHB3" } ], "pmid": "" }, { "name": "choline transmembrane transporter activity", "id": "GO:0015220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015220", "evidence": [ { "database": "UniProtKB", "id": "F1RHB3", "url": "https://www.uniprot.org/uniprotkb/F1RHB3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "32751", "name": "", "equation": "choline(out) = choline(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "32751", "database": "Rhea", "url": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "F1RHC3", "url": "https://www.uniprot.org/uniprotkb/F1RHC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHC3-1", "url": "https://www.uniprot.org/uniprotkb/F1RHC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRGALSPVLMLSAAPEPPPRPPPALSPPGPGPRHGSARSVPAPEPSGGLGAALDSSLRAAVAFKAEGQRCYREKKFREAIGKYHRALLQLKAAQGARPGGLPASTSGPATSPGPARLSEEQRRLVENTEVECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLGDYARALRYLQEARSREPTDTNVLRYIQLTQLKMNRCSLQREDSGSGAGSRDVIG", "length": 235, "header": "tr|F1RHC3-1|F1RHC3_PIG Isoform 1 of Tetratricopeptide repeat domain 9B OS=Sus scrofa OX=9823 GN=TTC9B PE=4 SV=2 CANONICAL=F1RHC3-1" }, "isoforms": [ { "isoform_ac": "F1RHC3-1", "url": "https://www.uniprot.org/uniprotkb/F1RHC3/entry", "sequence": { "sequence": 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"authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHC3", "url": "https://www.uniprot.org/uniprotkb/F1RHC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522141", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522141", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZTK0-1", "protein_name": "Tetratricopeptide repeat domain 9B", "gene_name": "Ttc9b", 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"https://www.uniprot.org/uniprotkb/F1RHI9/entry", "sequence": { "sequence": "MSTLLLNLDFGEPPPKKALEGNAKHRKFVKKRRLLERKGFLNKKQQPPSKVAKLQSESSKKGKSPKVDGAWKAPLLSKKKTAASSGGSGQSLDKPSAVPWLTPAPSQKAGSVVAKVDLLGEFQSALPKIKSHPTRPRKKGSQKNAPQNSTQAHSEKKYSGASQKGPSKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARSQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPLLNRKADCPENATMSLKRLTKKLLDRDIQVGKSGHSSVEDAQATMELYKLVEVEWEQHLIQNPPKD", "length": 343, "header": "tr|F1RHI9-1|F1RHI9_PIG Isoform 1 of Interferon stimulated exonuclease 20 like 2 OS=Sus scrofa OX=9823 GN=ISG20L2 PE=4 SV=1 CANONICAL=F1RHI9-1" }, "locus": { "chromosome": "4", "start_pos": 93371590, "end_pos": 93367223, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007088.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007088.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006896.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006896.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157573", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157573", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2YDK1-1", "protein_name": "Interferon-stimulated 20 kDa exonuclease-like 2", "gene_name": "ISG20L2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTLLLNLDFGEPPPKKALEGNAKHRKFVKKRRLLERKGFLNKKKQPPSKVPKLHSEPSQKGETPRVDGTWKATPLPKKKTTAASSSGSEQSLDKKAAVPWLTPAPSQKAGSVVAKVDLLGEFQSALPKIKSHPTRPQKKGSQKNPPPKNGPQNSTHTHSENKYSGVSQKIPGKMVAIDCEMVGTGPKGHVSSLARCSIVNYDGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARNQILKILAGKIVVGHAIHNDFKALQYIHPKSLTRDTSHIPLLNRKADCPENATMSLKSLTKKLLNRDIQAGKSGHSSVEDAQATMELYKLVEVEWEQHLAQNPPKD", "length": 349 }, "evidence": [ { "id": "F1RHI9", "url": "https://omabrowser.org/oma/group/F1RHI9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3U1G5-1", "protein_name": "Interferon-stimulated 20 kDa exonuclease-like 2", "gene_name": "Isg20l2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTILLNLDFGQPSKKAFGGNAKHQRFVKKRRFLEQKGFLNKKNQPPNKVSKLNSEPPKKGETSRVDGILKILPCPKKKEAAASKRDSERSKDKKAPLSWLTPAPSKKTASVVSKIDLLGEFQSALPKTKSTQKKGSKKKSLKKKIATENSTQAQSKDKGSKKKPLKKNAVPNSTQARSEDKCPTVPQNLPGKMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYVLPPCYIVNYRTRWSGIRKCHMVNATPFKTARSQILKILSGKVVIGHAIHNDYKALQYFHPKSLTRDTSRIPLLNRKADCPENVTLSLKHLTKKLLSRDIQVGNTGHSSVEDAQATMELYKLVEVEWEQHLAQNPPEN", "length": 368 }, "evidence": [ { "id": "F1RHI9", "url": "https://omabrowser.org/oma/group/F1RHI9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AXU3-1", "protein_name": "Interferon-stimulated 20 kDa exonuclease-like 2", "gene_name": "Isg20l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTILLNLDFGEPSKKAFGGNAKHQRFVKKRRFLEQKGFLSKKNQPPSKVSKLNSEPPKKGETSRVDSISKILSCLKKKKEAAASKRDSEQSKDKKASLSWLTPAPSKKTDSVVAKIDLLGEFQSALPKPKRRTQKKGSKKPLKKKIATENSTQTQSKDKGSNKKPLKKNAVQNSTQAQPEDKCPKVPQSLPRKMVAIDCEMVGTGPKGRVSSLARCSIVNYNGDVLYDEYIRPPCYIVDYRTRWSGIRKCHMVNATPFKTARSQILKILSGKVVVGHAIHNDYKALQYFHPKSLTRDTSQIPLLNRKADCPENVTLSLKHLTKKLLSRDIQTGLSGHSSVEDAQATLELYKLVEVEWEQHLAQNPPEN", "length": 369 }, "evidence": [ { "id": "F1RHI9", "url": "https://omabrowser.org/oma/group/F1RHI9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H9L3-1", "protein_name": "Interferon-stimulated 20 kDa exonuclease-like 2", "gene_name": "ISG20L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTLLLNLDFGEPPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSALPKINSHPTRSQKKSSQKKSSKKNHPQKNAPQNSTQAHSENKCSGASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARNPPTD", "length": 353 }, "evidence": [ { "id": "F1RHI9", "url": "https://omabrowser.org/oma/group/F1RHI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "pmid": "" }, { "name": "exonuclease activity", "id": "GO:0004527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004527", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "F1RHI9", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RHI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHI9" }, { "id": "SM00479", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00479" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Exonuclease", "eco_id": "ECO_0000259", "start_pos": 168, "end_pos": 334, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 229, "end_pos": 231 }, { "start_pos": 288, "end_pos": 290 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RHK0-1", "uniprot_ac": "F1RHK0", "uniprot_id": "F1RHK0_PIG", "mass": { "chemical_mass": 46504.0, "monoisotopic_mass": 46504.0 }, "refseq": { "ac": "XP_003131858", "name": "rRNA methyltransferase 3, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131858" }, "gene_names": [ { "name": "MRM3", "type": "recommended", "evidence": [ { "id": "F1RHK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ] }, { "name": "MRM3", "type": "synonym", "evidence": [ { "id": "XP_003131858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131858" } ] } ], "protein_names": [ { "name": "Mitochondrial rRNA methyltransferase 3", "type": "synonym", "evidence": [ { "id": "F1RHK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK0/entry#names_and_taxonomy" } ] }, { "name": "rRNA methyltransferase 3, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003131858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131858" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRM3", "url": "https://www.uniprot.org/uniprotkb/F1RHK0", "locus": { "chromosome": "12", "start_pos": 47080367, "end_pos": 47087405, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017806", "url": "https://www.ensembl.org/id/ENSSSCG00000017806" } ] } } ], "crossref": [ { "id": "F1RHK0", "url": "https://alphafold.ebi.ac.uk/entry/F1RHK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017806", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017806", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18106", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18106", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522640", "url": "https://www.ncbi.nlm.nih.gov/gene/100522640", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001537", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001537", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029026", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029026", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522640", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522640", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FLKFHKY", "url": "https://omabrowser.org/oma/group/FLKFHKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RHK0", "url": "https://www.orthodb.org/?gene=F1RHK0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43191", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43191", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43191:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43191:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00588", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00588", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22435", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22435", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131858", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131858", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHK0-1", "url": "https://www.uniprot.org/uniprotkb/F1RHK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALVQRVGWATRTLLLVTRARDLGARRGVRALRRSPVKVLFPSGQAVERKPGPGKQPRKAAAEASSREQRLNQPLQVPASQTPSTWEESGLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHAKMTYPETQLRHTLPLLLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLDWETVPKYLPTDTRVYVADNCGLYAQAQARASTKASDYGWVCDRRAKLHQYEEEGEDVESGASKGWLPELQVQTYDADWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQLRVRAEHLSRDRGCH", "length": 422, "header": "tr|F1RHK0-1|F1RHK0_PIG Isoform 1 of Mitochondrial rRNA methyltransferase 3 OS=Sus scrofa OX=9823 GN=MRM3 PE=3 SV=2 CANONICAL=F1RHK0-1" }, "isoforms": [ { "isoform_ac": "F1RHK0-1", "url": "https://www.uniprot.org/uniprotkb/F1RHK0/entry", "sequence": { "sequence": "MAALVQRVGWATRTLLLVTRARDLGARRGVRALRRSPVKVLFPSGQAVERKPGPGKQPRKAAAEASSREQRLNQPLQVPASQTPSTWEESGLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHAKMTYPETQLRHTLPLLLICDNLRDPGNLGTILRSAAGAGCSRVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLDWETVPKYLPTDTRVYVADNCGLYAQAQARASTKASDYGWVCDRRAKLHQYEEEGEDVESGASKGWLPELQVQTYDADWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQLRVRAEHLSRDRGCH", "length": 422, "header": "tr|F1RHK0-1|F1RHK0_PIG Isoform 1 of Mitochondrial rRNA methyltransferase 3 OS=Sus scrofa OX=9823 GN=MRM3 PE=3 SV=2 CANONICAL=F1RHK0-1" }, "locus": { "chromosome": "12", "start_pos": 47087371, "end_pos": 47081262, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019379.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019379.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018865.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018865.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522640", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522640", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AKP0-1", "protein_name": "Mitochondrial rRNA methyltransferase 3", "gene_name": "MRM3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAALRRAVPVLSRALAGPGGAAPGRRWVRALRRSPVRVLPPRKEQAEAQKRPVEHHPPPPAVERGSAGPGLWYEKASPGDRSLGKVVTIAKSRSFRDRHGKVLLEGLRLIRDALQAGAAPRALFFSTAEHLRELPPAPLKGARLVRVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPTAQLPIVLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVADLDWESVPSNLPSGVQVCVADNKDLGAQAETEPTSQGAGRSGSHSGNPKAPVKPKRKAAPPEHKDEEGTEGVCASELAAQYYYENWIQSPAAVVVGGETHGLSPDALHLAASTGGKRLVIPVVPGVDSLNSAVAAAIVLFEGKRQLQWRTHKQDNEKQFIPSIVG", "length": 407 }, "evidence": [ { "id": "F1RHK0", "url": "https://omabrowser.org/oma/group/F1RHK0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZQG0-1", "protein_name": "Mitochondrial rRNA methyltransferase 3", "gene_name": "Mrm3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPAKGMWYSLGPLLRVVQTRDLDARRWVRALRRSPVRVLFPSGQVEERKRAPDKQPRKAVPEASSQGQQQKQPLETSPSQTPHTWEEAGLRYDKACPGDRRLSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKMFFFSRLEYIKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETQLHHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGLYAQVQMSNKTGDRDWACDRRFLKFHKNEVDLDTKARKDWLPKLEVQSYDLDWTEAPAALVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRIKMGDLSRDSCCH", "length": 417 }, "evidence": [ { "id": "F1RHK0", "url": "https://omabrowser.org/oma/group/F1RHK0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BBM0-1", "protein_name": "Mitochondrial rRNA methyltransferase 3", "gene_name": "MRM3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALVKRVGLGTRPLLPVVQAWDLDARRWVRALRRSPVKVLFPSGEVVERKLDPGKQPRKAAAEASPREQRQKQQIQGPASQTPSTWEESGLRYDKAFPGDKRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPQIFFFSRLEYIKELPIEKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPETQLRHTLPISLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIINNLDWEAVPDHLPTDTRVYVADNCGLYVQAQAQRSNKASDYGWVRDQRPLKFHEYEEEDLESGASQCWLPELEVQSYDSDWTEAPAAVVIGGETHGVSLESLQLAESTGGGRLLIPVVPGVDSLNSAMAASILLFEGKRQLRVRDGC", "length": 413 }, "evidence": [ { "id": "F1RHK0", "url": "https://omabrowser.org/oma/group/F1RHK0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HTH0-1", "protein_name": "rRNA methyltransferase 3, mitochondrial", "gene_name": "Mrm3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAPARALSSSLIPLLRVIQTRDLGARRWVRALRRSPVRVVFPSGQVEERKRAPVQQPRKAVPEASSQQQRHKHALETSPSQTPHTWEETGLRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKVFFFSRLEYIKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETQLHHSLPLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNLEWETVPNHLPPDTRVYVADNCGLYAQAQISNKTSDHDWACDRRFLKFHKYEEEDLDSKTRKDWLPKLEVQSYDLDWTEAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVEDLSSERSYH", "length": 419 }, "evidence": [ { "id": "F1RHK0", "url": "https://omabrowser.org/oma/group/F1RHK0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5ND52-1", "protein_name": "rRNA methyltransferase 3, mitochondrial", "gene_name": "Mrm3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPAKGMWCSLGSLLRVVQTRDLNARRWVRALRRSPVRVLSPSGQVEERKRAPDQQPRKAVPKASSQGQRQKQPLETSPSQTPHTWEEAGLRYDKAFPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLIADALKAGAVPKAFFFSRLEYVKELPVDKLKDVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDPVKMTYPETPLHHTLPLVLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVNNVEWETVPNHLPPDTRVYVADNCGHYAQVQMSDKTGDRDWACDRRFLKFHKYEEDLDTKTRKDWLPKLEVQSYDLDWTGAPAAVVIGGETHGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRIKVEDLSRDRSYH", "length": 418 }, "evidence": [ { "id": "F1RHK0", "url": "https://omabrowser.org/oma/group/F1RHK0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HC36-1", "protein_name": "rRNA methyltransferase 3, mitochondrial", "gene_name": "MRM3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALVRPARFVVRPLLQVVQAWDLDARRWVRALRRSPVKVVFPSGEVVEQKRAPGKQPRKAPSEASAQEQREKQPLEESASRAPSTWEESGLRYDKAYPGDRRLSSVMTIVKSRPFREKQGKILLEGRRLISDALKAGAVPKMFFFSRLEYLKELPVDKLKGVSLIKVKFEDIKDWSDLVTPQGIMGIFAKPDHVKMTYPKTQLQHSLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPIINNLEWETVPNYLPPDTRVYVADNCGLYAQAEMSNKASDHGWVCDQRVMKFHKYEEEEDVETGASQDWLPHVEVQSYDSDWTEAPAAVVIGGETYGVSLESLQLAESTGGKRLLIPVVPGVDSLNSAMAASILLFEGKRQLRGRAEDLSRDRSYH", "length": 420 }, "evidence": [ { "id": "F1RHK0", "url": "https://omabrowser.org/oma/group/F1RHK0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "pmid": "" }, { "name": "rRNA (guanosine-2'-O-)-methyltransferase activity", "id": "GO:0070039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070039", "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial large ribosomal subunit assembly", "id": "GO:1902775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902775", "evidence": [ { "database": "UniProtKB", "id": "F1RHK0", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RHK0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 422, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RHK0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RHK0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RHK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK0" }, { "id": "SM00967", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00967" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA 2-O ribose methyltransferase substrate binding", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 195, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RHK4-1", "uniprot_ac": "F1RHK4", "uniprot_id": "F1RHK4_PIG", "mass": { "chemical_mass": 23739.0, "monoisotopic_mass": 23739.0 }, "refseq": { "ac": "XP_013836657", "name": "class A basic helix-loop-helix protein 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836657" }, "gene_names": [ { "name": "BHLHA9", "type": "recommended", "evidence": [ { "id": "F1RHK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ] }, { "name": "BHLHA9", "type": "synonym", "evidence": [ { "id": "XP_013836657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836657" } ] } ], "protein_names": [ { "name": "Class A basic helix-loop-helix protein 9", "type": "recommended", "evidence": [ { "id": "F1RHK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK4/entry#names_and_taxonomy" } ] }, { "name": "class A basic helix-loop-helix protein 9", "type": "synonym", "evidence": [ { "id": "XP_013836657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836657" } ] } ], "function": [ { "annotation": "Transcription factor, which play a role in limb development. Is an essential player in the regulatory network governing transcription of genes implicated in limb morphogenesis.", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4#function" }, { "database": "UniProtKB", "id": "ARBA00058134", "url": "https://www.uniprot.org/uniprotkb/ARBA00058134#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BHLHA9", "url": "https://www.uniprot.org/uniprotkb/F1RHK4", "locus": { "chromosome": "12", "start_pos": 46642545, "end_pos": 46643219, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017802", "url": "https://www.ensembl.org/id/ENSSSCG00000017802" } ] } } ], "crossref": [ { "id": "F1RHK4", "url": "https://alphafold.ebi.ac.uk/entry/F1RHK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017802", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017802", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521580", "url": "https://www.ncbi.nlm.nih.gov/gene/100521580", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521580", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521580", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GNWRRCP", "url": "https://omabrowser.org/oma/group/GNWRRCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RHK4", "url": "https://www.orthodb.org/?gene=F1RHK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013836657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHK4-1", "url": "https://www.uniprot.org/uniprotkb/F1RHK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHRGAPGPGLGGLKGAEDSAEDLGNACLGARREFGVLRENGQPCGLGEAEETAGGRRRSRPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRITALSLVLRASPTPRWPCGHLECHGQAARAGDAGDPGCRPPQPAPLPAGPFAPRCASCFPHAPLGRPTAVAEAQGAAQTSAGSWRRCPGAPSAWPRGHLRAGPGMGYQHS", "length": 224, "header": "tr|F1RHK4-1|F1RHK4_PIG Isoform 1 of Class A basic helix-loop-helix protein 9 OS=Sus scrofa OX=9823 GN=BHLHA9 PE=4 SV=2 CANONICAL=F1RHK4-1" }, "isoforms": [ { "isoform_ac": "F1RHK4-1", "url": "https://www.uniprot.org/uniprotkb/F1RHK4/entry", "sequence": { "sequence": "MHRGAPGPGLGGLKGAEDSAEDLGNACLGARREFGVLRENGQPCGLGEAEETAGGRRRSRPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRITALSLVLRASPTPRWPCGHLECHGQAARAGDAGDPGCRPPQPAPLPAGPFAPRCASCFPHAPLGRPTAVAEAQGAAQTSAGSWRRCPGAPSAWPRGHLRAGPGMGYQHS", "length": 224, "header": "tr|F1RHK4-1|F1RHK4_PIG Isoform 1 of Class A basic helix-loop-helix protein 9 OS=Sus scrofa OX=9823 GN=BHLHA9 PE=4 SV=2 CANONICAL=F1RHK4-1" }, "locus": { "chromosome": "12", "start_pos": 46643219, "end_pos": 46642548, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019375.2", "url": "https://www.ensembl.org/id/ENSSSCT00000019375.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018861.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018861.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521580", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521580", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZY30-1", "protein_name": "Class A basic helix-loop-helix protein 9", "gene_name": "Bhlha9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRGTPGLGLRGLKRGEDSVGDLGHSCPEAGRNFGVLRRSLAEEEEVAGRKRERPARSKARRMAANVRERKRILDYNEAFNALRRALQHDLGGKRLSKIATLRRAIHRITALSLVLRASPAPRWPCGHLECHGQAAHGSSAGDSGFSVPRSVLSPAAPSLARRDTASPLVPPAPRCASCSPNAHLGRPRMMAEVPSLAQASGGSWRRCPGAAPVGSIQWRWGSGLGYQHS", "length": 230 }, "evidence": [ { "id": "F1RHK4", "url": "https://omabrowser.org/oma/group/F1RHK4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HR90-1", "protein_name": "Class A basic helix-loop-helix protein 9", "gene_name": "Bhlha9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLRGTPGLSLRDLKWSEGSVEDLGRSCPEADRNFGVLRRSLDEAEEAAGRKRERPARSKARRMAANVRERKRILDYNEAFNALRRALQHDLGGKRLSKIATLRRAIHRITALSLVLRASPAPRWPCSHLECHSQAAHGSGAEDSGFRAPLSTPPPAVPGLARRGVTSSLVPPAPLCASCSPHAHLGRPRVMAEGPSLAQASGGSWRRCPGAPPVGPIPWRWGSGLGYQHS", "length": 230 }, "evidence": [ { "id": "F1RHK4", "url": "https://omabrowser.org/oma/group/F1RHK4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3N0S4-1", "protein_name": "Class A basic helix-loop-helix protein 9", "gene_name": "BHLHA9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHRGAPGPGLRGLKGAEGSPQDLGNSCLEAERDFGVLRENGGPRGLGEAEEVAGSRKRSRPVRSKARRMAANVRERRRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRWPCGHQECHRQAARAGDAGDLGSSPPAPPPPAGPFAPRCASCHPHTPLGRPRAVAEALPGWAQASPGSWRRSLGAPSAWPRGLLRAGPGLGHQHS", "length": 224 }, "evidence": [ { "id": "F1RHK4", "url": "https://omabrowser.org/oma/group/F1RHK4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RJB0-1", "protein_name": "Class A basic helix-loop-helix protein 9", "gene_name": "Bhlha9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRGTPGLGLGGLNRAEDFVEDLGRSCSEAGRNFGVLRRSSLDEAEEAAGRKRERPTRSKARRMAANVRERKRILDYNEAFNALRRALQHDLGGKRLSKIATLRRAIHRITALSLVLRASPAPRWPCGHLECHGQAAQGSSTGNSSFSVPRSAPSPIAPSLTRRDIASPLVPPTPRCASCSPHSHLGRPRVMAEVPNLAQTSGGNWRQCPGAPPVRPVSWRWGSGLGYQHS", "length": 231 }, "evidence": [ { "id": "F1RHK4", "url": "https://omabrowser.org/oma/group/F1RHK4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTU4-1", "protein_name": "Class A basic helix-loop-helix protein 9", "gene_name": "BHLHA9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCPPHAPLARPSAVAEGPGLAQASGGSWRRCPGASSAGPPPWPRGYLRSAPGMGHPRS", "length": 235 }, "evidence": [ { "id": "F1RHK4", "url": "https://omabrowser.org/oma/group/F1RHK4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" }, { "name": "developmental process", "id": "GO:0032502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032502", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RHK4", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RHK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 224, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RHK4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RHK4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RHK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK4" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 118, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RHK8-1", "uniprot_ac": "F1RHK8", "uniprot_id": "F1RHK8_PIG", "mass": { "chemical_mass": 61632.0, "monoisotopic_mass": 61632.0 }, "refseq": { "ac": "XP_001929554", "name": "leucine-rich repeat-containing protein 71 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929554" }, "gene_names": [ { "name": "LRRC71", "type": "recommended", "evidence": [ { "id": "F1RHK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK8" } ] }, { "name": "LRRC71", "type": "synonym", "evidence": [ { "id": "XP_001929554", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929554" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 71", "type": "synonym", "evidence": [ { "id": "F1RHK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHK8/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 71 isoform X6", "type": "synonym", "evidence": [ { "id": "XP_001929554", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929554" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RHK8", "url": "https://www.uniprot.org/uniprotkb/F1RHK8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC71", "url": "https://www.uniprot.org/uniprotkb/F1RHK8", "locus": { "chromosome": "4", "start_pos": 93160678, "end_pos": 93175961, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006462", "url": "https://www.ensembl.org/id/ENSSSCG00000006462" } ] } } ], "crossref": [ { "id": "F1RHK8", "url": "https://alphafold.ebi.ac.uk/entry/F1RHK8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006462", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006462", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100158094", "url": "https://www.ncbi.nlm.nih.gov/gene/100158094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158094", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VQYQVQF", "url": "https://omabrowser.org/oma/group/VQYQVQF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RHK8", "url": "https://www.orthodb.org/?gene=F1RHK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46984", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46984", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46984:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46984:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929554", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929554", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RHK8", "url": "https://www.uniprot.org/uniprotkb/F1RHK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RHK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGEASAPPVASPRTPRPGIQKSSGSVAKKGDRGAKEKPATVLPPVGEEEPKNPEEYQCTGFLEVDFAELCTRWGYTDFPKVVSRPRPHPTFVPSASTSEKPTIDDQRLSGSCSLNSLESKYVFFRPTIQVEVESEDKSVKEIYIRGWKVEERILGIFSKCLPSLSQLQAINLWKVGLTDKTLTTFIALLPLCSSTLRKVSLEGNPLPEQSYHKLMAVDSTIAHLSLRNNNIDDHGAQLLGQALSTLHSCNRNLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHTEVVERRRLLLEKGSQERSRSPSNSRHGDSKPEREKNQLMGVSSFAVVDKTDKTQAMKTPKGLGKKKEKLGEVVKKEEKSGTGQSPTQGTPKKEDSTKASKGKVTIPEQKPGKGKGTKSGSKEKRSILLESELVGEATEMVNPLLEPVEHRDGKVFMPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQFSKSKSASKGPVGLLWLSLAKNYFSPQCPAYAMIQELMLPRDPISKAKHREEEAMASS", "length": 559, "header": "tr|F1RHK8-1|F1RHK8_PIG Isoform 1 of Leucine rich repeat containing 71 OS=Sus scrofa OX=9823 GN=LRRC71 PE=4 SV=1 CANONICAL=F1RHK8-1" }, "isoforms": [ { "isoform_ac": "F1RHK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RHK8/entry", "sequence": { "sequence": "MSGEASAPPVASPRTPRPGIQKSSGSVAKKGDRGAKEKPATVLPPVGEEEPKNPEEYQCTGFLEVDFAELCTRWGYTDFPKVVSRPRPHPTFVPSASTSEKPTIDDQRLSGSCSLNSLESKYVFFRPTIQVEVESEDKSVKEIYIRGWKVEERILGIFSKCLPSLSQLQAINLWKVGLTDKTLTTFIALLPLCSSTLRKVSLEGNPLPEQSYHKLMAVDSTIAHLSLRNNNIDDHGAQLLGQALSTLHSCNRNLVSLNLAFNHIGDEGAGYIADGLRLNRSLLWLSLAHNRIQDKGALKLAEVLRPFELTHTEVVERRRLLLEKGSQERSRSPSNSRHGDSKPEREKNQLMGVSSFAVVDKTDKTQAMKTPKGLGKKKEKLGEVVKKEEKSGTGQSPTQGTPKKEDSTKASKGKVTIPEQKPGKGKGTKSGSKEKRSILLESELVGEATEMVNPLLEPVEHRDGKVFMPGNKVLLHLNLLRNRITEVGLEAFLTAVQYQVQFSKSKSASKGPVGLLWLSLAKNYFSPQCPAYAMIQELMLPRDPISKAKHREEEAMASS", "length": 559, "header": "tr|F1RHK8-1|F1RHK8_PIG Isoform 1 of Leucine rich repeat containing 71 OS=Sus scrofa OX=9823 GN=LRRC71 PE=4 SV=1 CANONICAL=F1RHK8-1" }, "locus": { "chromosome": "4", "start_pos": 93175812, "end_pos": 93162572, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007079.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007079.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006887.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006887.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHK8", "url": "https://www.uniprot.org/uniprotkb/F1RHK8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158094", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158094", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7F1M1-1", "protein_name": "Leucine-rich repeat-containing protein 71 isoform X1", "gene_name": "Lrrc71", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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"end_pos": 41571642, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007962", "url": "https://www.ensembl.org/id/ENSSSCG00000007962" } ] } } ], "crossref": [ { "id": "F1RHL8", "url": "https://alphafold.ebi.ac.uk/entry/F1RHL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007962", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007962", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17058", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17058", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14942", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14942", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14942:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14942:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72165", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72165", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RHL8", "url": "https://www.uniprot.org/uniprotkb/F1RHL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHL8-1", "url": "https://www.uniprot.org/uniprotkb/F1RHL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VDVFQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKTDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGVQHISWSYVWRTYHLMAAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK", "length": 132, "header": "tr|F1RHL8-1|F1RHL8_PIG Isoform 1 of U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP25 PE=4 SV=3 CANONICAL=F1RHL8-1" }, "isoforms": [ { "isoform_ac": "F1RHL8-1", "url": "https://www.uniprot.org/uniprotkb/F1RHL8/entry", "sequence": { "sequence": "VDVFQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKTDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGVQHISWSYVWRTYHLMAAGEKLTEDRKKLRDYGIRNRDEVSFIKKLRQK", "length": 132, "header": "tr|F1RHL8-1|F1RHL8_PIG Isoform 1 of U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Sus scrofa OX=9823 GN=SNRNP25 PE=4 SV=3 CANONICAL=F1RHL8-1" }, "locus": { "chromosome": "3", "start_pos": 41571449, "end_pos": 41568257, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008725.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008725.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008501.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008501.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHL8", "url": "https://www.uniprot.org/uniprotkb/F1RHL8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-72165", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72165", "resource": "Reactome", "description": "mRNA Splicing - Minor Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RHL8", "url": "https://www.uniprot.org/uniprotkb/F1RHL8" } ], "pmid": "" }, { "name": "U12-type spliceosomal complex", "id": "GO:0005689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005689", "evidence": [ { "database": "UniProtKB", "id": "F1RHL8", "url": "https://www.uniprot.org/uniprotkb/F1RHL8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": 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"url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01843", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01843", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124319", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124319", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI52-1", "url": "https://www.uniprot.org/uniprotkb/F1RI52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1064, "header": "tr|F1RI52-1|F1RI52_PIG Isoform 1 of Ras-associating and dilute domain-containing protein OS=Sus scrofa OX=9823 GN=RADIL PE=3 SV=2 CANONICAL=F1RI52-1" }, "isoforms": [ { "isoform_ac": "F1RI52-1", "url": "https://www.uniprot.org/uniprotkb/F1RI52/entry", "sequence": { "sequence": "MFYGTHFIMSPPAKSKLKRQSQLLSSVLSRTLSYKYRDLDATFSSLGASDDPAELSTQLSAPGVLKVFGDSVCSGTHYKSVLATGTSSARELVKEALERYALSPERAGQYVLCDVVGQAGDAGRPWQAACVRVFGDNEKPLLIQELWKPREGLSRRFELRKRSDVEALAAKDVDTVTAGINAQARRLQRSRAKGTPAPTSGGGRSPPPHRLRRTVSETSLSSATTVPDAARGPEEPGQDAMRCSLYESPHLLLLQGYSQQHDSLVYVLNRERHTVGHRTPSSKPSISLSAPDILPLHCTIRRRQPAGREPAGARLVLEPIPGAPVSVNFSEVGGRTVALRHGDLLSLGLYYLLLFKDPVQAQPLPTQALARLRVVPQSCRLCGAVLRAQGTSSSARAAPPRPRQLHLEFEPDVEDALLQRIMTLVEPGGDDHKLTPAFLLCLCIQHSATRLEPGSFGQLLLKIARMIRETVWEKTKELAEKQAHLQEPLSSASVTMAGLAPDLQHLLFWMSNSVELLYFIQQRCPLYMQSLEEELDVTGSKESLFSCALTASEEAMALLEEVVLYAFQQCVYYVSKSLYVCLPALLECPPFQTECRESWCSAPQLPEELRRVVSVYQAALELLRRLQVHPEIAAQVLAYLFFFSGTLLLNQLLDKGPSLSCFHWPRGVQACARLQQLLEWTRSAGFGEAGERFFRKLSCTLDLLATPSAQLIQMSWASLRAAFPALSPAQLHRLLTQYQLASAMGPMSAWEPTAQDCPEAFRSDEVLESYENPPPIVLPSEGFQVDLDADRLDDSIYQHLLYIRHFLWSLRSKPSASGGPAPPECPQGPHHASPEGHPEASRDPGRGAREASPEHPPPSSGAPRAQGPPGRPSGRVSRGGPQPGPLHGDASCLLTPPATPLEPTVPEWPEASSSCGRALLEGSRNGLGGPRGAAPEGDGAAPADEPPPAPSSRSSSTDDFCYLFVVELERGPSGLGMGLIDGLHTPLGAPGLYIQTLLPGSPAASDGRLSLGDRILEVNGSSLLGVGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIRFRTPPP", "length": 1064, "header": "tr|F1RI52-1|F1RI52_PIG Isoform 1 of Ras-associating and dilute domain-containing protein OS=Sus scrofa OX=9823 GN=RADIL PE=3 SV=2 CANONICAL=F1RI52-1" }, "locus": { "chromosome": "3", "start_pos": 3712086, "end_pos": 3642527, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008313.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008313.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008094.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511556", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511556", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LNN9-1", "protein_name": "Ras-associating and dilute domain-containing protein", "gene_name": "Radil", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGSSVFLGLQPSPTHWLKASVVIHEDAPTMFYGTQLIMSPPTKNKLKRQSQLLSTMLSRTLSYKYRDLDSTFCSLRASDDPAELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGTSSAQELVKEALERYALDPECAGQYVLCDVVGQAGDAGQRWQAQCFRVFGDNEKPLLIQELWKPREGLSRRFELRKRSDVEELAARDVDTTTAGINAQARRLQRVRAKGTPALTSEAAQSSPPTRLRRSVSETSLSPATILPDAVQSPEESTSDSMRYSLYQCPHLLLLQGYSQQHDSLVYVLSRERHTVGQRTPSSKPSISLSAPDILPLHCTIRRHQSAEGGQAGTKVVLEPIAGASVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLFKDPGQAQPLPACAVARLGAAPQNCRMCGAVLRARGVTSLPPAVVRRRSLLLEFEPDMEDTLLQRIMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFRHLLLKISKRIRDTVWEKTKELAEKQAQLQEPISWASFPMADLVPDLQHILFWMSNSIELLYFIQQKCPLYMQSMEEELDVTGSKESLFSCTLTASEEAMAALEEVVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWHSGPALPEELRRVVSVFQATSDLLQQLQVHPEVASQMLAYLFFFSGTLLLNQVLDKGPSLSCFHWPRGVQACARLQQFLEWARSTGLGAPAERFFRKLSCTLHLLATPSAQLVQMSWVTLRATFPALNPAQLHRLLTQYQLASAMGPMSAWEPGAQDSPEAFQSEDILESYENPPPIVLPSQGFQVDLEADCLEDSIYQHLLYIRHFLWGLRGQASPDSGPIQPEGIEGLYHTIPEGHPEGHGCPLANRDPGRGAVETAPAHPLPVTGAPWTQGPLGRQPTRGDRRGSQAGSLHTDSSCLLTPPSTPLGQEPGGPTWPEPSSLCGKALLEGQRNGPGGPPGVALEGDTVQAAAEPPAEASSPSSSAEDFCYVFMVELERGPSGLGMGLIDGMHTPLGAPGLYIQTLLPGSPAASDGRLSLGDRILEVNGSSLMGVSYMRAVDLIRHGGKKMRFLVAKSDVETAKKIRFRKPPS", "length": 1100 }, "evidence": [ { "id": "F1RI52", "url": "https://omabrowser.org/oma/group/F1RI52/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZWZ1-1", "protein_name": "Ras-associating and dilute domain-containing protein", "gene_name": "Radil", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METEKDDPGLGGLELPRLQPSPSHWLKASVVIYEDALTMFYGTQFIMSPPTKNKLKRQSQLLSSMLSRTLSYKYRDLDSTFCSLGASDDPSELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGASSAQELVKEALERYALDPECASQYVLCDVVGQAGDSGQRWQAQCFRVFGDNEKPLLIQELWKPREGLSRRFELRKKSDVEELAARDVDTTTAGINAQARRLQRIRAKGTPALTSETAQSSPPTGLRRTVSETSLSPTPTLPEAAQRPEEPLPDSMRYSLYQCPHLLLLQGYNQQHDSLVYVLSRERHTVGQRTPSSKPSISLSAPDILPLHCTIRRHQSPDGGPAGTRLVLEPIAGAPVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLFKDPGQAQPLPACALARLGAAPQSCRMCGAALKARGPASLPAAVVRRRSLFLEFEPDVEDTLLQRIMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFRHLLLKIAKRIRDTVWEKTKELAEKQAQLQEPISWASFPMADLVPDLQHILFWMSNCIELLYFIQQKSPLYVQSMEEELDVTGSKESLFSCTLTASEEAMAALEEVVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWRSGPALPEELRRVVSVFQATMDLLQQLQMHPEVASQMLAYLFFFSGTLLLNQVLDKGPSLSCFHWPRGVQVCARLQQFLEWARSAGLGAPAERFFRKLSCTLHLLATPRAQLVQMSWATLRATFPALNPAQLHRLLTQYQLASAMGPVSAWDPGAQESPEAFQTEDILESYENPPPIVLPSQGFQVDLEADCPEDSIYQHLLYIRHFLWGLRGQASPESGPAQPDSIEGLYHTIPEGHLEGHGCPLTNREQGRGAVETAPGHSLPVPGAPRAQGPPGRQPPRGDRRGSQAGSLHTDSSCLLTPPSTPLGLEPGGPTWPEPSGLCGKALLEGQRNGPGGLPGAVLEGDAVQAAAEPPAEASSPSSSTEDFCYVFMVELERGPSGLGMGLIDGMHTPLEAPGLYIQTLLPGSPAASDGRLSLGDQILEVNGSSLMGVSYMRAVDLIRHGGKKMRFLVAKSDMETAKKIRFRKPPS", "length": 1109 }, "evidence": [ { "id": "F1RI52", "url": "https://omabrowser.org/oma/group/F1RI52/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q69Z89-1", "protein_name": "Ras-associating and dilute domain-containing protein", "gene_name": "Radil", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSSIFLGLQPSPSHWLKSSVVIHEDAPTMFYGTQLIMSPPTKNKLKRQSQLLSTMLSRTLSYKYRDLDSTFCSLGASDDPSELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGSSSAQELVKEALERYALDPECAGQYVLCDVVGQAGDSGQRWQAQCFRVFGDNEKPLLIQELWKPREGLSRRFELRKKSDVEELASRDVDTTTAGINAQARRLQRIRAKGTPALTSEAAQSSPPTRLRRTVSETSLSPAPSLPEAAQRPEEPVPEAMRYSLYQCPHLLLLQGYSQQHDSLVYVLSKERHTVGQRTPSSKPSISLSAPDILPLHCTIRRHQSPEGGPAGTRLVLEPITGASVSVNFSEVGRNPVVLQHGDLLSLGLYYLLLFKDPGQAQPLPACALARLGAAPQSCRMCGAVLRARGAPSLPAAVVRRRSLLLEFEPDVEDTLLQRIMTLIEPGGDDHKLTPAFLLCLCIQHSAMHFQPGTFRHLLLKISKRVRDTVWEKTKELAEKQAQLQEPISWASFPMADLVPDLQHILFWMSNSIELLYFIQQKSPLYVQSMEEELDVTGSKESLFSCTLTASEEAMAALEEVVLYAFQQCVYYLSKCLYVCLPALLECPPFQTERRESWRSGPALPEELRRVVSVFQATLDLLQQLQMHPEVASQMLAYLFFFSGTLLLNQVLDKGPSLSCFHWPRGVQVCARLQQFLEWARSAGLGAPAERFFRKLSCTLHLLATPRAQLIQMSWATLRVTFPALNPAQLHRLLTQYQLASAMGPVSAWEPGAPDGPEAFQSEDILESYENPPPIVLPSQGFQVDLEADCVEDSIYQHLLYIRHFLWGLRGQASPDSGPAQPESIEGLYHTIPEGHLEGHGCPLANRDPGRVAVETAPPHSLPVTGAPRAQGPPGRQPTRGDRRGSQAGSLHTDSSCMLTPPSTPLGLEPAGPSWPEPSGLCGRAVLDGQRNGPGGLPGAVLEGDAIQDAEPPAEASSPSSSAEDFCYVFMVELERGPSGLGMGLIDGMHTPLGAQGLYIQTLLPGSPAASDGRLSLGDQILEVNGSSLRGVSYMRAVDLIRHGGKKMRFLVAKSDMETAKKIRFRNPPS", "length": 1099 }, "evidence": [ { "id": "F1RI52", "url": "https://omabrowser.org/oma/group/F1RI52/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96JH8-4", "protein_name": "Ras-associating and dilute domain-containing protein", "gene_name": "RADIL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFYGTHFIMSPPTKSKLKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLSAPGVLKVFGDSVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAGDAGQRWQARCFRVFGDSEKPLLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGINAQARRLQRSRAKGTPTPALGDARSSPPPRLRRTVSETSLSPVNALPAAAQGPEEPGPDAMRYSLYQSPHLLLLQGYSQQHDSLVYVLNRDRHTVGQRTPSSKPSISLSAPDILPLHCTIRRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLYYLLLFKDPAQAQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALPRRQQLLLEFEPHLEDTLLQRIMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAEKQAQLQEPISLASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGSKESLFSCTLTASEEAMAVLEEVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWSSAPELPEELRRVVSVYQAALDLLRQLQVHPEVASQMLAYLFFFSGTLLLNQLLDRGPSLSCFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCTLNLLATPRAQLIQMSWTALRAAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESYENPPPIVLPSDGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVLDGHLEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPSRGGSQAGPPHTDSSCLLTPPSTPLGPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPAPSSRSSSTEDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHFRTPPL", "length": 1075 }, "evidence": [ { "id": "F1RI52", "url": "https://omabrowser.org/oma/group/F1RI52/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "pmid": "" }, { "name": "neural crest cell migration", "id": "GO:0001755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001755", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase binding", "id": "GO:0051020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051020", "evidence": [ { "database": "UniProtKB", "id": "F1RI52", "url": "https://www.uniprot.org/uniprotkb/F1RI52" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1019, "end_pos": 1021, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RI52-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1064, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RI52-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RI52" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI52" }, { "id": "PS51126", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51126" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dilute", "eco_id": "ECO_0000259", "start_pos": 492, "end_pos": 763, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI52" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 965, "end_pos": 1050, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI52" }, { "id": "PS50200", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50200" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-associating", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 164, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 199 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1019, "end_pos": 1021 }, { "start_pos": 328, "end_pos": 330 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RI55-1", "uniprot_ac": "F1RI55", "uniprot_id": "F1RI55_PIG", "mass": { "chemical_mass": 219336.0, "monoisotopic_mass": 219336.0 }, "refseq": {}, "gene_names": [ { "name": "SDK1", "type": "recommended", "evidence": [ { "id": "F1RI55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ] } ], "protein_names": [ { "name": "Sidekick cell adhesion molecule 1", "type": "synonym", "evidence": [ { "id": "F1RI55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI55/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SDK1", "url": "https://www.uniprot.org/uniprotkb/F1RI55", "locus": { "chromosome": "3", "start_pos": 3324798, "end_pos": 2814547, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007574", "url": "https://www.ensembl.org/id/ENSSSCG00000007574" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007574", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007574", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-373756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI55-1", "url": "https://www.uniprot.org/uniprotkb/F1RI55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 2014, "header": "tr|F1RI55-1|F1RI55_PIG Isoform 1 of Sidekick cell adhesion molecule 1 OS=Sus scrofa OX=9823 GN=SDK1 PE=3 SV=4 CANONICAL=F1RI55-1" }, "isoforms": [ { "isoform_ac": "F1RI55-1", "url": "https://www.uniprot.org/uniprotkb/F1RI55/entry", "sequence": { "sequence": 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"length": 2014, "header": "tr|F1RI55-1|F1RI55_PIG Isoform 1 of Sidekick cell adhesion molecule 1 OS=Sus scrofa OX=9823 GN=SDK1 PE=3 SV=4 CANONICAL=F1RI55-1" }, "locus": { "chromosome": "3", "start_pos": 3324610, "end_pos": 2829287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008310.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008310.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008091.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008091.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1610, "start_aa": "Thr", "end_pos": 1610, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1610", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-373756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373756", "resource": "Reactome", "description": "SDK interactions" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "synapse assembly", "id": "GO:0007416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007416", "evidence": [ { "database": "UniProtKB", "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1RI55", "url": "https://www.uniprot.org/uniprotkb/F1RI55" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1108, "end_pos": 1110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1159, "end_pos": 1161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1554, "end_pos": 1556, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1573, "end_pos": 1575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1625, "end_pos": 1627, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"url": "https://www.uniprot.org/uniprotkb/F1RI61", "locus": { "chromosome": "3", "start_pos": 1776157, "end_pos": 1777520, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007569", "url": "https://www.ensembl.org/id/ENSSSCG00000007569" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007569", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007569", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00070", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00070", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GICPGWS", "url": "https://omabrowser.org/oma/group/GICPGWS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11346:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11346:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RI61", "url": "https://www.uniprot.org/uniprotkb/F1RI61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI61-1", "url": "https://www.uniprot.org/uniprotkb/F1RI61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALQFEAFYAGGLAPGWNLLVQGHSDSGEDKFEINFLSEAGDIVFHIKPRFSSASIVANTFQGGRWGQEEVSTVFPLVLGEPFEMEVSSDAEHFHVHAQEHKVLQFAHRHRPLAAITRVQVLSDHRLAQVELARRGLSWGEGGY", "length": 144, "header": "tr|F1RI61-1|F1RI61_PIG Isoform 1 of Galectin OS=Sus scrofa OX=9823 GN=GRIFIN PE=4 SV=1 CANONICAL=F1RI61-1" }, "isoforms": [ { "isoform_ac": "F1RI61-1", "url": "https://www.uniprot.org/uniprotkb/F1RI61/entry", "sequence": { "sequence": "MALQFEAFYAGGLAPGWNLLVQGHSDSGEDKFEINFLSEAGDIVFHIKPRFSSASIVANTFQGGRWGQEEVSTVFPLVLGEPFEMEVSSDAEHFHVHAQEHKVLQFAHRHRPLAAITRVQVLSDHRLAQVELARRGLSWGEGGY", "length": 144, "header": "tr|F1RI61-1|F1RI61_PIG Isoform 1 of Galectin OS=Sus scrofa OX=9823 GN=GRIFIN PE=4 SV=1 CANONICAL=F1RI61-1" }, "locus": { "chromosome": "3", "start_pos": 1777507, "end_pos": 1776178, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008304.2", "url": "https://www.ensembl.org/id/ENSSSCT00000008304.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008085.1", "url": "https://www.ensembl.org/id/ENSSSCP00000008085.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RI61", "url": "https://www.uniprot.org/uniprotkb/F1RI61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A4D1Z8-1", "protein_name": "Grifin", "gene_name": "GRIFIN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVQSKAFCAGGLAPGWKLLVQGHADSGEDRFETNFLLETGDIAFHIKPRFSSATVVGNAFQYGRWGPEQVSSIFPLAPGEPFEIEVSWDAEHFHVYAPEHKVLQFPCRQRPLGATTRVRVLSDHCLAQVELAKRGLSWGDRGY", "length": 144 }, "evidence": [ { "id": "F1RI61", "url": "https://omabrowser.org/oma/group/F1RI61/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E1BEM8-1", "protein_name": "Galectin", "gene_name": "GRIFIN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALQFEAFHAGGLAPGWNLLVQGHSDSGEDQFEINFLSETGDIVFHIKPRFSSATMVANAFQGGRWGQEEASSIFPLVLGEPFEMEVSSDAEHFHVHAQEHKVLQFAHRHRPLAAITRVQVLSDHRLAQVELARKGLSWGAGGY", "length": 144 }, "evidence": [ { "id": "F1RI61", "url": "https://omabrowser.org/oma/group/F1RI61/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O88644-1", "protein_name": "Grifin", "gene_name": "Grifin", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALQFEAFCAGGLAPGWSLTVQGHADAGEDKFEINFLTDAGDIAFHVKPRFSSATVVGNAFQGGRWGQEEVSSVFPLTLGEPFEVEVSADTEHFHIYAQEQKVLQFPHRHRPLATITRVRVLSDHQLAQVELAKRGLSWGDGGY", "length": 144 }, "evidence": [ { "id": "F1RI61", "url": "https://omabrowser.org/oma/group/F1RI61/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DGJ1-1", "protein_name": "Grifin", "gene_name": "grifin", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLRFEASCPDGLCPGWSVILKGETPPEASKFEINFLCDRDDRVAFHFNPRFTESDIICNSYMANRWGQEERCNHFPLGVEEPFQIEIYSDNDHFHVYIDKAKVMQYKHRVEDLKTITKLQVVNDVKISSLEITKKLFY", "length": 139 }, "evidence": [ { "id": "F1RI61", "url": "https://omabrowser.org/oma/group/F1RI61/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9D1U0-1", "protein_name": "Grifin", "gene_name": "Grifin", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTLQFEAFCAGGLAPGWSLTVQGHADAGEEKFEINFLTDAGDIAFHVKPRFSSATVVGNAFQGGRWGQEEVSSIFPLTLGEPFEMEVSADAEHFHIYAQEQKVLQFPHRHRPLATITRVRVLSEHRLAQVELAKRSLSWGDGGY", "length": 144 }, "evidence": [ { "id": "F1RI61", "url": "https://omabrowser.org/oma/group/F1RI61/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1RI61", "url": "https://www.uniprot.org/uniprotkb/F1RI61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI61" }, { "id": "PS51304", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51304" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Galectin", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 133, "start_aa": "Phe", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RI72-1", "uniprot_ac": "F1RI72", "uniprot_id": "F1RI72_PIG", "mass": { "chemical_mass": 166675.0, "monoisotopic_mass": 166675.0 }, "refseq": { "ac": "XP_020929526", "name": "golgin subfamily A member 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929526" }, "gene_names": [ { "name": "GOLGA3", "type": "recommended", "evidence": [ { "id": "F1RI72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI72" } ] }, { "name": "GOLGA3", "type": "synonym", "evidence": [ { "id": "XP_020929526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929526" } ] } ], "protein_names": [ { "name": "Golgin A3", "type": "synonym", "evidence": [ { "id": "F1RI72", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI72/entry#names_and_taxonomy" } ] }, { "name": "golgin subfamily A member 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020929526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929526" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI72", "url": "https://www.uniprot.org/uniprotkb/F1RI72" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GOLGA3", "url": "https://www.uniprot.org/uniprotkb/F1RI72", "locus": { "chromosome": "14", "start_pos": 22738540, "end_pos": 22689571, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009733", "url": "https://www.ensembl.org/id/ENSSSCG00000009733" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009733", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009733", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155657", "url": "https://www.ncbi.nlm.nih.gov/gene/100155657", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155657", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155657", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDDQHAQ", "url": "https://omabrowser.org/oma/group/QDDQHAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RI72", "url": "https://www.orthodb.org/?gene=F1RI72", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18902", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18902", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18902:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18902:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020929526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BTI4", "url": "https://www.uniprot.org/uniprotkb/A0A287BTI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI72", "url": "https://www.uniprot.org/uniprotkb/F1RI72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI72-1", "url": "https://www.uniprot.org/uniprotkb/F1RI72-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGVVAMQDGPEDRSSNGPEALPKPPGSLALLDQQEEAQCTNVEVNRASDEGGSQGDTCQNGPMPQFPDPPSSVGPDASPGVAGFHDNLRKSQGTSAEGSGRKEALQSLRLSLPMQETQLCSTEASLPLEKEEQVRLQARKRLEEQLKQYRVKRQQERSSQPVTKTRLFSTLDPELMLNPETLPRASAVAMTKEYSFLRTSVPRGPKVGSLGLLAHPKEKKSSKSSKIRSLADYRTEESDAQNSGGSVPAVDSARASLKQNRSSGTSVVSEVSLCPEADDRLENASLTGDNVSEADGNESDSSSYSSVSTRGALSLLANSLGTREAPYVVSGQEVAAAALGQFPSISDVLQAAAAEHQDQRQEVNGETRSRADSICSSVSMESSVAETHDEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTRLQAQVEHSHNSQQRQDSLSSEVDTLKQSCWDLEQAMADLQNMLEAKNASLASSNSDLQVAEEQYHRLMAKVEEMQRSMLSKDNTVHDLRQQMTALQSQLRQVQLERTALSSKLQASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQQRSIKEKERIAAQLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASVATLEQQLEQVKLTLHQRDQQLEALQQEHLDLLKQFTSTQENLQAREQALGDLRVRCDELQARLDELQGEAASRDDTICVLQNEKIVLEVALQAARREELDPGSKRQEESTEETSETLERLREELAIKSSQVEHLQQEAATLKKQTQKIKEQFLQQKVMVEAYRRDAASKDQLVSELKATKKRLDAEAKELRQELIRLQGEKRSVEVEHARLQKDVTQARQQVADLEGHLQSVQRERDQMEMNLQSLQFDKEQMVALTEANEVLKKQIEELQQEATKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAEAELGQLRAQAASSSDDFPLHERIQALETELQTVGHSKTMLERELQEVISMTSQELEEQREKVLELEDELQEARGFRRKIKHLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVALQKEKVTVRSLEEQVAAAKAEAGHNRRHFKAATLELSEVKKELQAKEQEVQRLQAEADGLQIQEGKHSQEIAQFQAELAEARTQLQFLQKQLDEQLSKEPIGNQEMENLKWEVDQKEREIQALKQQLDLTEQQSTKELEGVQQSLQNIKSELEMAREDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKELKEATSSSPVTPVKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEAHTVTVHESLSSWTQGDPTSPSPPGDHANPRGDTERPGQSRASGEGLGTAAERPHHECL", "length": 1488, "header": "tr|F1RI72-1|F1RI72_PIG Isoform 1 of Golgin A3 OS=Sus scrofa OX=9823 GN=GOLGA3 PE=4 SV=5 CANONICAL=F1RI72-1" }, "isoforms": [ { "isoform_ac": "A0A287BTI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTI4/entry", "sequence": { "sequence": "MDGVVAMQDGPEDRSSNGPEALPKPPGSLALLDQQEEAQCSTEASLPLEKEEQVRLQARKRLEEQLKQYRVKRQQERSSQPVTKTRLFSTLDPELMLNPETLPRASAVAMTKEYSFLRTSVPRGPKVGSLGLLAHPKEKKSSKSSKIRSLADYRTEESDAQNSGGSVPAVDSARASLKQNRSSGTSVVSEVSLCPEADDRLENASLTGDNVSEADGNESDSSSYSSVSTRGALSLLANSLGTREAPYVVSGQEVAAAALGQFPSISDVLQAAAAEHQDQRQEVNGETRSRADSICSSVSMESSVAETHDEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTRLQAQVEHSHNSQQRQDSLSSEVDTLKQSCWDLEQAMADLQNMLEAKNASLASSNSDLQVAEEQYHRLMAKVEEMQRSMLSKDNTVHDLRQQMTALQSQLRQVQLERTALSSKLQASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQQRSIKEKERIAAQLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASVATLEQQLEQVKLTLHQRDQQLEALQQEHLDLLKQFTSTQENLQAREQALGDLRVRCDELQARLDELQGEAASRDDTICVLQNEKIVLEVALQAARREELDPGSKRQEESTEETSETLERLREELAIKSSQVEHLQQEAATLKKQTQKIKEQFLQQKVMVEAYRRDAASKDQLVSELKATKKRLDAEAKELRQELIRLQGEKRSVEVEHARLQKDVTQARQQVADLEGHLQSVQRERDQMEMNLQSLQFDKEQMVALTEANEVLKKQIEELQQEATKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAEAELGQLRAQAASSSDDFPLHERIQALETELQTVGHSKTMLERELQEVISMTSQELEEQREKVLELEDELQEARGFRRKIKHLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVALQKEKVTVRSLEEQVAAAKAEAGHNRRHFKAATLELSEVKKELQAKEQEVQRLQAEADGLQIQEGKHSQEIAQFQAELAEARTQLQFLQKQLDEQLSKEPIGNQEMENLKWEVDQKEREIQALKQQLDLTEQQSTKELEGVQQSLQNIKSELEMAREDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKELKEATSSSPVTPVKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEAHTVTVHESLSSWTQGDPTSPSPPGDHANPRGDTERPGQSRASGEGLGTAAERPHHECL", "length": 1407, "header": "tr|A0A287BTI4-1|A0A287BTI4_PIG Computationally mapped isoform of Golgin A3 OS=Sus scrofa OX=9823 GN=GOLGA3 PE=4 SV=1 CANONICAL=F1RI72-1" }, "locus": { "chromosome": "14", "start_pos": 22735438, "end_pos": 22696552, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052298.1", "url": "https://www.ensembl.org/id/ENSSSCT00000052298.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059557.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059557.1" } ] } }, { "isoform_ac": "F1RI72-1", "url": "https://www.uniprot.org/uniprotkb/F1RI72/entry", "sequence": { "sequence": "MDGVVAMQDGPEDRSSNGPEALPKPPGSLALLDQQEEAQCTNVEVNRASDEGGSQGDTCQNGPMPQFPDPPSSVGPDASPGVAGFHDNLRKSQGTSAEGSGRKEALQSLRLSLPMQETQLCSTEASLPLEKEEQVRLQARKRLEEQLKQYRVKRQQERSSQPVTKTRLFSTLDPELMLNPETLPRASAVAMTKEYSFLRTSVPRGPKVGSLGLLAHPKEKKSSKSSKIRSLADYRTEESDAQNSGGSVPAVDSARASLKQNRSSGTSVVSEVSLCPEADDRLENASLTGDNVSEADGNESDSSSYSSVSTRGALSLLANSLGTREAPYVVSGQEVAAAALGQFPSISDVLQAAAAEHQDQRQEVNGETRSRADSICSSVSMESSVAETHDEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALSTRLQAQVEHSHNSQQRQDSLSSEVDTLKQSCWDLEQAMADLQNMLEAKNASLASSNSDLQVAEEQYHRLMAKVEEMQRSMLSKDNTVHDLRQQMTALQSQLRQVQLERTALSSKLQASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQQRSIKEKERIAAQLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASVATLEQQLEQVKLTLHQRDQQLEALQQEHLDLLKQFTSTQENLQAREQALGDLRVRCDELQARLDELQGEAASRDDTICVLQNEKIVLEVALQAARREELDPGSKRQEESTEETSETLERLREELAIKSSQVEHLQQEAATLKKQTQKIKEQFLQQKVMVEAYRRDAASKDQLVSELKATKKRLDAEAKELRQELIRLQGEKRSVEVEHARLQKDVTQARQQVADLEGHLQSVQRERDQMEMNLQSLQFDKEQMVALTEANEVLKKQIEELQQEATKAITEQKQKMKRLGSDLSSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAEAELGQLRAQAASSSDDFPLHERIQALETELQTVGHSKTMLERELQEVISMTSQELEEQREKVLELEDELQEARGFRRKIKHLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQVALQKEKVTVRSLEEQVAAAKAEAGHNRRHFKAATLELSEVKKELQAKEQEVQRLQAEADGLQIQEGKHSQEIAQFQAELAEARTQLQFLQKQLDEQLSKEPIGNQEMENLKWEVDQKEREIQALKQQLDLTEQQSTKELEGVQQSLQNIKSELEMAREDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKELKEATSSSPVTPVKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEAHTVTVHESLSSWTQGDPTSPSPPGDHANPRGDTERPGQSRASGEGLGTAAERPHHECL", "length": 1488, "header": "tr|F1RI72-1|F1RI72_PIG Isoform 1 of Golgin A3 OS=Sus scrofa OX=9823 GN=GOLGA3 PE=4 SV=5 CANONICAL=F1RI72-1" }, "locus": { "chromosome": "14", "start_pos": 22735438, "end_pos": 22696552, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010671.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010671.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010394.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010394.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1378, "start_aa": "Thr", "end_pos": 1378, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1378", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RI72", "url": "https://www.uniprot.org/uniprotkb/F1RI72" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155657", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155657", "resource": "KEGG Pathway" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZGC2-1", "protein_name": "Golgin A3", "gene_name": "GOLGA3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESSSVQQDVLLDNRSSSGAPGTSQEHGDCNANSALPATGDEVNTSSVNLSEVPNEEGSLELNSKADACQNGPELLFPDSPISFDPTSSPQGQESSPGVPGFHDSLRKSQGTSAEGVALRKEALQSLKLSLPMQETELCSVESSLPLENEEQIRLQARRRLEEQLRQYRVKRHQERSNQSTSKSRPSSTLDPELMLNPEILPRASTVAMTKEYSFLRTSVPRGPKLGSLGLPASSKERKSSKSSKSSKIRSLADYRTEDSGSGSSAGNLMATDLPGGTLKQSRSGPASVVSEISLPFDTDDRIENSSLAGDSISEIDGSEAGMRLDGNESDSSTYSSVSGKGLCNNLPNSEGKERIPYTINGQKIHPDAIGQFPSISEVLQAAAVEHQAQEQEFNGEIRSRRDSISSSVSMESSVAGTHDEMLQVLKEKMRLEGQLEALSAEANQALKEKAELQAQLAALNMKLQAQVEHSQSSQQKQESLSSEVATLKQSCWDLERAMADLQNTLEAKNASLASSNNDLQLAEEQYQRLMLKVEDMQKSVLTRDSTVHDLRQQLASLQSQLQKVQLERTTLTNKLKASETEITSLQNVRQWYQQQLVLAQEARVRLQSEMANIQAGQMTQAGVLEHLKLENVALSQQLTETQHRSIKEKERIAAQLQNIEADMLDQEAAFMQIQEAKTMVEEDLQRKLEEFEDEKEQLQKMADSAATLEQELDQVKLTLHQRDLQLESLQQEHLDLMKQFTMTQEMLHTKEQTLDDLQTQYDELKARLEEFQSDATSKDDMIQYLQNEKIVLEVALQTAKASQDQLDEGTKRLGEDTEVTSEILEQLRQEMAIRSSQVENLQQENGSLKKQVQKVKEQFLQQKVMVEAYRRDASSKDQLISELKATKKRLDSEMKELKRELLQIQVEKQSLETEHSKLQKEVTEVHQQMVEIENHLQSVQKERDEMETRLQSLQFDKEQMASLAEANQTLKLQVEQMQEEAKKAITEQKQKMKRLGSDLTSAQKEMKAKHKAYENAVSILSRRLQESLTAKESAEAELSKLKAQITDGGSNQIAQERIQALETELQAVRSSKLMLEKELQEVISLTSQELEEYREKVLELEDELQESRGFRRKIKRLEEINKKLALELEHERGKLTGLSQSNAALREHNNVLETALAKREADLVQLNLQVQAVLKRKEEEDQQMQQLIQALQASLEKEKSKVKDLKEQVAAAKADAAHNRRHYRAAALELNEVKKELHAKELLVQALQAEVDKLQVEDEKHSQEVSQFQQELAEARSQLQLLQKKLDDKLSEQPLVSQEVEDLKWEVEQKEREIGTLKQQLDMSEQRSHKELEGMQVVLQNIKTELEVVREDLSVTQKDKFMLQAKVSELKNSMKSLLQQNQQLKMDLKHGKMKKRKGENNSSNPVTPVKIPDCPVPAALLEELLKPSTAVSKEPLKNLNSCLRQLKQEMDSLQRQMEEHTITVHESMSSWTQIEEQLMDFTSTSPATASDQQERPALVETKHNCDVSDKEALAL", "length": 1516 }, "evidence": [ { "id": "F1RI72", "url": "https://omabrowser.org/oma/group/F1RI72/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7GW86-1", "protein_name": "Golgin subfamily A member 3 isoform X1", "gene_name": "Golga3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLFRVFLVWAALTMDGVPVKQDGFWEDKSSNDISSCPEASPETLGSLALPPDQPNEVQSVSIEVNNSIFREGGSPDRSSQEALCQNGQFPDHPLSLDPTASPVGPDASAGVDGFHDNLRKSQGTSAEGSVRKEALQSLRLSLPMQETQLCSTASSLPLEKEEQVRLQARKRLEEQLIQYRVKRHRERSSQPATKMKLFSTLDPELMLNPENLPRASTVAVTKEYSFLRTSVPRGPKVGSLGLLAQSKEKKSSKSSKIRSLADYRTEDSSDSGGLGSTGDAVGGSLKQSRSSTSVVSEVSPSSETDNRVESASLAGDSVSEADGNESDSSSHSSFSTRGACGVLVNVAMPGAAYMVDGQEISVEALGQFPSIKDVLQSAAAQHQDQNQEVNGEVQSRRDSICSSVSMESSLAETQDEMLQVLKEKMRLEGQLEALSLEATQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEDMQRNILSKDNTVHDLRQQMAALQSQLHQVQLERTTLTSKLQASQAEITSLQHARQWYQQQLALAQEARVRLQGEVAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFLQIKEAKTMVEEDLQRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQSKGQSLDELHSRYDELQARLEELQREADSREDTIHFLQNEKIVLEVALQSARNDKEELDRGTQHLEEDTEETSGILEQLRQELAVKSNQVEHLQQETASLRKQIQKVKEQFLQQKVMVEAYRRDATSKDQLISELKATKKRLDSEMKELRQELIKVHGEKKTVEVEHSRLQKEMSLVHQQMADLEGHLQSVQKERDEMETHLQSLQFDKEQMVALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLTSAQKEMKTKHKAYENAVSILSRRLQEALATKEATDAELSQLRAQSTGGSSDPVLHEKIRALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVEALQASLEKEKMKVNSMKEQMAAAKVEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAQADELQIQEGKHSQEIAHFQTELAEARTRLQFLQKQLDEQMSQQPTGSQEMENLKWELDQKEREIQSLKQQLDLTEQHGKKELESTQQTLQTIRSELEMVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKKKEPKGESNSSSPATPIKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEEHTITVHESLSSWAQAEAAPAEHAHPRGDTKPHSQNSVPREGLGQ", "length": 1501 }, "evidence": [ { "id": "F1RI72", "url": "https://omabrowser.org/oma/group/F1RI72/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SFD3-1", "protein_name": "Golgin A3", "gene_name": "GOLGA3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSAAAMQEGLVEDRSSSGSSAQPEGPPKPPGSLAPLDQWDEAQCASAKVNRTSDEGRQGDTCLNGPTPQFPEPPSPSGPDASPGVAGFHDNLRKSQGTSAEGIVRKEALQSLRLSLPMQETQLCSTEASLPLEKEEQVRLQARKRLEEQLKQYRVKRQQERSSQPVTKTRLFSTLDPELMLNPETLPRASAVAMTKEYSFLRTSVPRGPKVGSLGLLAHPKEKKSSKSSKIRSLADYRTEDSDVRNSGGNVPAPDSTRGSLKQNRGSGTSVVSEVSLCPEADDRLENASLTGDNVSEADGTESDSSSYSSVSARGTPGIPANMGGTREAPYMVSGREIAVGALGQFPSISDVLQAAAAEHQEQRQEVNGETRSRTNSICSSVSLESSVAETHDEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAALHTRLQAQLEHSHSSQQRQDSLSSEVDTLKQSCWDLEQAMTDLQNMLEAKNASLASSNSDLQVAEEQYQRLMAKVEEMQRSILSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLKASQAEIASLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMSQAGLLEHLKLENVSLSHQLTETQQRSIKEKERIAAQLQGIEADMLDQEAAFVQIQEAKTMVEEDLQRRLEEFEDEKEQLQKMVASAAVLEQQLEQVKLTLHQRDQQLEALQQEHLDLLKQFTSTQETLQTREQSLGDLQVRYDELQARLDELQGEAASREDAIQALQNEKIVLEVALQAAHSSREEFDRGAKRLEEGAQDTSDTLEQLRQELAIKSSQVEHLQQEAGALKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATKKRLDSEVKELRQELMKLQGEKRSVEVEHSRLQKEMSQIQQQVVDLEGHLQSAQRERDEMETQLQSLQFDKEQMVAVTEANEVLKKQIEELQQEATKAITEQKQKMKRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAEAELSQLRAQAAAGGSDLTLHERVQVLEAELQAVGHSKMMLERELQEVISLTGQELEEQREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQAALQKEKVMVHSLEEQVAAAKAEAGHNRRHFKAATLELSEVKKELQAKEQEVQRLQAEADGLQIQEGKHSQEIAEFQAELAEARTQLQLLQKQLDEQLSKEPIGNQEMENLKWEVDQKEREIQSLKQQLDLTEHQSKQELDGIQQSLQNIKSELEMVREDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSSPVTPVKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEAHAVTVHESLSSWTQGDPASPSPPGDHANPRGDTERHGQGRASQEGLGTVTTEHPHPECL", "length": 1496 }, "evidence": [ { "id": "F1RI72", "url": "https://omabrowser.org/oma/group/F1RI72/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A2CEB4-1", "protein_name": "Golgin subfamily A member 3", "gene_name": "golga3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENGNNGMVSIEAKPPQHPDAQHCKNPNSNTVESLKPERSLVTEKIPNGHVKAELLPNGEAMVEGQDVGGGSTPPSATPSPGSRLSDSSPSTELDPGVVSFPDSLERSEGSVHTGDALQSLRLSIPMQETELSSTDPCVEMENEEKIRQEARRRLEEQLKQYRAQRHTERTRRSTPKSRPFSTLDPELMLHPEGLPRANTVAMTKEYSFLRTSVPRGPKLGSLGIPSSREKKSKSSRSSKIHSLADYKTPESEGSGGAVSASADSSFTSLHSTISSVSTVSEISISSEANNHSESSQLIRDNISEVDGSESGFRADGNDSDSSSYSSVSTTGTYNMLSAIVNRPKAPYTVEGREIAAEAMGHFPSLQEVLQAATEERHMEELEQDREGSVEPRSRRDSFSSSVSYGSSVMGTHDEMLQVLKEKMRLEGQLESLSSEASQALKEKTELQAQLATVNAQLKAQVEQTQAGQERQSTLKTEVTTLRSNCSALEKAMVDLQTNLEGKNASLASLGNDLEVAEEQYQRLMVKVEEMQQSLNAKDNTVSELRQQMGGLQTQLQRVQSERNALQSRLKTSQAEVDSLQQLRLWYQQQLNLAQEARVRLQGEMANMQAGQMTQFGVLENLKIENVTLSHKLTETNHRSIKEKERIAVQLQSIEADMLTQEAAIHQIQEAKTMVEEDLQHKLEEFEEEREHLLKLANTATTLERELEQVKLVLFQKDSQLESLQREHLELMKQLTTTQETLQTKEQALNQLEARYQELQVQLEELQTDASAKEETLQYLQNEKIVLEVALQAARADKSELDEGAEKLGEEVLVASDTLDQLRQEVQVKATQIEALQHENGTLKKQAQKLKEQFMQQKVMVEAYRRDASSKEQLISELKASKKRLVAEVKDLKQELLKTEGEKKSAVQEQARLQKEVERVQQQMNGLEAHLQSVQTERDQLDSQLQSLQFDQNQLAAVTEENENLRKRVEQMQNEARTAISEQKVKMKRLGTDLTSAQKEMKAKHKAYENAVGILSRRLQEALAAKETAEAELDKLKAQVADGGNSQELQAKVKSLQGELQAVSQSKAMLEKELQEVITLTSTELEEYQEKVLELEDEQLQESRNFKKRIRRLEDANKKLALELEHEKGKLSGLGKSHSALREHANILEAALAKREADLVQLNLQVQAVLKRKEEEDQQMRQLVQTLQTALEKEKIKVKDLTEQVAEAKLEAAHNRRHYRAAVLELSEIKKDLQAKEELVKALEKEATTLAAQDEKHSEEVSRFREELADAHTQLQILQKQLDDELNKQPVTNQEVEDLKWEVEQKQREMEAQKQQLEMVEQCHQREMQSQQDMLQTIKVELEMVQEELNGTRKDKFMLQAKVGELRNSMKTVLQQNNQLKQDLKNSRLRKQRMDLKGESTPVTPVKIPDCPVPASLLDELLKPSTSVNKEPLNNLHNCLKQLKQEMDSLQKQMEEHTVTVTSLASPEDELQKLGLHDSSESSNKEDKEEMLPS", "length": 1494 }, "evidence": [ { "id": "F1RI72", "url": "https://omabrowser.org/oma/group/F1RI72/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZLD5-1", "protein_name": "Golgin A3", "gene_name": "Golga3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGASAKQDGLWENKSSSDISSCPEASLETVGSLAQLPDQQDTAQDGSVEVNRVFKEEGSPDRSSQVPICQNGQIPDLQLSLDPTTSPVGPDASTGVDGFHDNLRKSQGTSAEGSVRKEALQSLRLSLPMQETQLCSTASSLPLEKEEQVRLQARKRLEEQLMQYRVKRHRERSSQPATKMKLFSTLDPELMLNPENLPRASAVAVTKEYSFLRTSVPRGPKVGSLGLLAHSKEKKNSKSSKIRSLADYRTEDPSDSGGLGSTADAVGSSLKQSRSSTSVVSEVSPSCETDNRAESASLAGDSVSEADGNESDSSSHSSFSARGACAVLGNVGTPGAAYVVDGQEISAEALGQFPSIKDVLQAAAAQHQDQNQEANGEVQSRRDSICSSVSMESSFAEPQEELLQILKDKRRLEGQVEALSLEASQALQEKAELQAQLAALSTRLQAQVEHSHSSQQKQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLMAKVEAMQRNILSKDNTVHDLRQQMTALQSQLQQVQLERTTLTSKLQASQAEITSLQQARQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDLQRKLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLDVIKQLTSTQEALQAKGQSLDDLQTRYDELQARLEELQREADSREDAIHFLQNEKIVLEVALHSARSDKEELDRGARRLEEDTEETSGLLEQLRQDVAVKSNQVEHLQQETATLRKQMQKVKEQFLQQKVMVEAYRRDAASKDQLINELKATKKRLDSEMKELRQELIKLHGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERDEMEIHLQSLKFDKEQMIALTEANETLKKQIEELQQEAKKAITEQKQKMKRLGSDLTSAQKEMKTKHKAYENAVSILSRRLQEALANKEATDAELNQLRAQSTGGSSDPALHEKIHALEVELQNVGQSKILLEKELQEVITMTSQELEESREKVLELEDELQESRGFRRKIKRLEESNKKLALELEHERGKLTGLGQSNAALREHNSILETALAKREADLVQLNLQVQAVLQRKEEEDRQMKQLVQALQISLEKEKTEVSSLKEQMAAARVEAGHNRRHFKAATLELSEVKKELQAKEHLVQTLQAEVDELQIQEGKHSQEIAQFQTELAEARTQLQLLQKKLEEQRSQQPTGSQEMEDLKWELDQKEREIQSLKQQLDLTEHQGKKELEGTQQTLQTIKSELETVQEDLSETQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKKKEPKGESSSSSPATPIKIPDCPVPASLLEELLRPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEEHTITVHESLSSWAQVEAAPAEHAHARGDTKVHNQNSVPGEGLGQ", "length": 1487 }, "evidence": [ { "id": "F1RI72", "url": "https://omabrowser.org/oma/group/F1RI72/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q08378-1", "protein_name": "Golgin subfamily A member 3", "gene_name": "GOLGA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"length": 1498 }, "evidence": [ { "id": "F1RI72", "url": "https://omabrowser.org/oma/group/F1RI72/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1RI72", "url": "https://www.uniprot.org/uniprotkb/F1RI72" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RI72", "url": "https://www.uniprot.org/uniprotkb/F1RI72" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RI72", "url": "https://www.uniprot.org/uniprotkb/F1RI72" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 602, "end_pos": 604, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1378 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 261, "end_pos": 263 }, { "start_pos": 284, "end_pos": 286 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 298, "end_pos": 300 }, { "start_pos": 480, "end_pos": 482 }, { "start_pos": 602, "end_pos": 604 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RI75-1", "uniprot_ac": "F1RI75", "uniprot_id": "F1RI75_PIG", "mass": { "chemical_mass": 61454.0, "monoisotopic_mass": 61454.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF26", "type": "recommended", "evidence": [ { "id": "F1RI75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ] } ], "protein_names": [ { "name": "Zinc finger protein 26", "type": "synonym", "evidence": [ { "id": "F1RI75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI75/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF26", "url": "https://www.uniprot.org/uniprotkb/F1RI75", "locus": { "chromosome": "14", "start_pos": 22593642, "end_pos": 22608916, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009730", "url": "https://www.ensembl.org/id/ENSSSCG00000009730" } ] } } ], "crossref": [ { "id": "F1RI75", "url": "https://alphafold.ebi.ac.uk/entry/F1RI75", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009730", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009730", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "INAKMST", "url": "https://omabrowser.org/oma/group/INAKMST/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF49", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF49", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI75-1", "url": "https://www.uniprot.org/uniprotkb/F1RI75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATRFRTATCWGLLSFKDVSMEFTWEEWQLLDSAQKHLYRDVTLENYSNLLSVGYHDTKPDLIFKLEQGEEPWIVNASISGQSCPEGWKEWYQNNQDELESVERSYACNAFGKLHLSKPHISSRHRLLKYNTHGKSLTQNLASSRSYLRKNPDKFHGYEESYFLKHQRAHSIEKNCVCNECGKAFRCKSQLIVHLRIHTGERPYECTKCERAFSAKSNLNAHQRVHTGEKPYSCIECGKVFSFRSQLIVHQEIHTGGKPYGCSECGKAYSWKSQLILHQRSHTGVKPYECSECGKAFSLKSPFVVHQRTHTGVKPHKCSECGKAFRSKSYLLIHIRMHTGEKPYQCSECGKAFNMKTQLVVHQGIHTGNNPYQCSECGKAFGRKEQLTAHLRAHAGEKPYGCGECGKAFSSKSYLVIHRRTHTGERPYECSFCERAFCGKSQLIIHQRTHSTEKPYECSECEKAYPRKASLQIHQKTHSGEKPFKCSECGKAFTQKSSLSEHQRVHTGEKPWKCSECGKSFCWNSGLRIHRKTHK", "length": 535, "header": "tr|F1RI75-1|F1RI75_PIG Isoform 1 of Zinc finger protein 26 OS=Sus scrofa OX=9823 GN=ZNF26 PE=3 SV=3 CANONICAL=F1RI75-1" }, "isoforms": [ { "isoform_ac": "F1RI75-1", "url": "https://www.uniprot.org/uniprotkb/F1RI75/entry", "sequence": { "sequence": "MATRFRTATCWGLLSFKDVSMEFTWEEWQLLDSAQKHLYRDVTLENYSNLLSVGYHDTKPDLIFKLEQGEEPWIVNASISGQSCPEGWKEWYQNNQDELESVERSYACNAFGKLHLSKPHISSRHRLLKYNTHGKSLTQNLASSRSYLRKNPDKFHGYEESYFLKHQRAHSIEKNCVCNECGKAFRCKSQLIVHLRIHTGERPYECTKCERAFSAKSNLNAHQRVHTGEKPYSCIECGKVFSFRSQLIVHQEIHTGGKPYGCSECGKAYSWKSQLILHQRSHTGVKPYECSECGKAFSLKSPFVVHQRTHTGVKPHKCSECGKAFRSKSYLLIHIRMHTGEKPYQCSECGKAFNMKTQLVVHQGIHTGNNPYQCSECGKAFGRKEQLTAHLRAHAGEKPYGCGECGKAFSSKSYLVIHRRTHTGERPYECSFCERAFCGKSQLIIHQRTHSTEKPYECSECEKAYPRKASLQIHQKTHSGEKPFKCSECGKAFTQKSSLSEHQRVHTGEKPWKCSECGKSFCWNSGLRIHRKTHK", "length": 535, "header": "tr|F1RI75-1|F1RI75_PIG Isoform 1 of Zinc finger protein 26 OS=Sus scrofa OX=9823 GN=ZNF26 PE=3 SV=3 CANONICAL=F1RI75-1" }, "locus": { "chromosome": "14", "start_pos": 22608476, "end_pos": 22594239, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010668.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010668.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010391.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010391.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I4W1-1", "protein_name": "Zinc finger protein 26", "gene_name": "Znf26", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEAEPRSASFRGLLSFKDVSVELSCEEWQLLDSAQQHLYREVILENYSNLLSVGYLGSKPDLIFKLEQGKEPWIINAKISTQICPEDWKEWYRKSQDENVQRSYNRNVFGKLSMTRTHVSPRQRLHKHNTCGTHVVQNSSSSRIFVRKNPDRFHSYKESYFFKHQRHSSLEKNCICNECGKAFRCKSQLVVHFRIHTGERPYKCTKCERAFSAKSNLNAHQRVHTGEKPYLCSECGKVFSFRSQLIVHQEVHTGEKPFCCSECGKAYSWKSQLVLHQRSHTGVKPYECNECGKTFSLKSPFIVHQRTHTQVKPHKCNDCGKAFRSKFYLLVHTRMHTGEKPYQCSDCGKTFNVKTQFIVHQGVHTGKNPYDCSQCGKAFGRKEQLTAHLRAHAGEKPYGCSECGKSFSSKSYLVIHRRTHTGERPYGCSLCERAFCGKSQLIIHQRTHSTEKPYECNECGKAYSRKASLQIHQKIHSGEKPFKCNECGKAFTQKSSLGEHQRVHTREKPWKCSECGKSFCWNSGLRIHRKTHKADIQVMK", "length": 540 }, "evidence": [ { "id": "F1RI75", "url": "https://omabrowser.org/oma/group/F1RI75/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P17031-1", "protein_name": "Zinc finger protein 26", "gene_name": "ZNF26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATSFRTASCWGLLSFKDISMEFTWDEWQLLDSTQKYLYRDVILENYHNLISVGYHGTKPDLIFKLEQGEDPWIINAKISRQSCPDGWEEWYQNNQDELESIERSYACSVLGRLNLSKTHDSSRQRLYNTRGKSLTQNSAPSRSYLRKNPDKFHGYEEPYFLKHQRAHSIEKNCVCSECGKAFRCKSQLIVHLRIHTGERPYECSKCERAFSAKSNLNAHQRVHTGEKPYSCSECEKVFSFRSQLIVHQEIHTGGKPYGCSECGKAYSWKSQLLLHQRSHTGVKPYECSECGKAFSLKSPFVVHQRTHTGVKPHKCSECGKAFRSKSYLLVHIRMHTGEKPYQCSDCGKAFNMKTQLIVHQGVHTGNNPYQCGECGKAFGRKEQLTAHLRAHAGEKPYGCSECGKAFSSKSYLVIHRRTHTGERPYECSLCERAFCGKSQLIIHQRTHSTEKPYECNECEKAYPRKASLQIHQKTHSGEKPFKCSECGKAFTQKSSLSEHQRVHTGEKPWKCSECGKSFCWNSGLRIHRKTHK", "length": 533 }, "evidence": [ { "id": "F1RI75", "url": "https://omabrowser.org/oma/group/F1RI75/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1RI75", "url": "https://www.uniprot.org/uniprotkb/F1RI75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RI75-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 535, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RI75-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RI75" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI75" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 176, "end_pos": 203, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI75" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 85, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 46, "end_pos": 48 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RI76-1", "uniprot_ac": "F1RI76", "uniprot_id": "F1RI76_PIG", "mass": { "chemical_mass": 85357.0, "monoisotopic_mass": 85357.0 }, "refseq": { "ac": "XP_020928544", "name": "zinc finger protein 84 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928544" }, "gene_names": [ { "name": "ZNF84", "type": "recommended", "evidence": [ { "id": "F1RI76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI76" } ] }, { "name": "ZNF84", "type": "synonym", "evidence": [ { "id": "XP_020928544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928544" } ] } ], "protein_names": [ { "name": "Zinc finger protein 84", "type": "synonym", "evidence": [ { "id": "F1RI76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI76/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 84 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020928544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928544" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1RI76", "url": "https://www.uniprot.org/uniprotkb/F1RI76#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RI76", "url": "https://www.uniprot.org/uniprotkb/F1RI76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF84", "url": "https://www.uniprot.org/uniprotkb/F1RI76", "locus": { "chromosome": "14", "start_pos": 22555334, "end_pos": 22579549, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009729", "url": "https://www.ensembl.org/id/ENSSSCG00000009729" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009729", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009729", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620909", "url": "https://www.ncbi.nlm.nih.gov/gene/100620909", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620909", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620909", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YEVMKPG", "url": "https://omabrowser.org/oma/group/YEVMKPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020928544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RI76", "url": "https://www.uniprot.org/uniprotkb/F1RI76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RI76-1", "url": "https://www.uniprot.org/uniprotkb/F1RI76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMLQESFSFEDLSVDFTQKEWQLLDPYQKDLYKDVMLENYSSLVSLGYEVMKPGVILKLEQGEEPWTGDGEIPGSDPPEQVLQVNGHMTWHKDNQEKLQNMKQDHECDAPGKNFNMNVNFVPLRSSNNEDDIDGLVLKHHLGLIFPKADCGKTESADVNIFDKLFLHTKPGESDTWLKYYECGKFDKVSYKKSQIIIYHRTRLGEKLYECSECRKRFNKKSSLIKHQSRHIREIAYGCGKCGKTFPQKSQFITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCSECGRAFSEKSNLINHQRIHTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKPYGCSDCRKAFFEKSELVRHQTIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLLSHQMTHTGEKPFVCSKCGKAFSRKSQLVRHQRTHTGEKPYECNECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECTECGKAFGEKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECGICQKAFFEKSELIRHQRTHTGEKPYECSECRKAFREKSSLINHQRTHTGEKPFECSDCGKAFSRKSHLIPHQRTHTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYQCSECEKAFSQKSQLINHRRTHTLKKS", "length": 740, "header": "tr|F1RI76-1|F1RI76_PIG Isoform 1 of Zinc finger protein 84 OS=Sus scrofa OX=9823 GN=ZNF84 PE=3 SV=3 CANONICAL=F1RI76-1" }, "isoforms": [ { "isoform_ac": "F1RI76-1", "url": "https://www.uniprot.org/uniprotkb/F1RI76/entry", "sequence": { "sequence": "MTMLQESFSFEDLSVDFTQKEWQLLDPYQKDLYKDVMLENYSSLVSLGYEVMKPGVILKLEQGEEPWTGDGEIPGSDPPEQVLQVNGHMTWHKDNQEKLQNMKQDHECDAPGKNFNMNVNFVPLRSSNNEDDIDGLVLKHHLGLIFPKADCGKTESADVNIFDKLFLHTKPGESDTWLKYYECGKFDKVSYKKSQIIIYHRTRLGEKLYECSECRKRFNKKSSLIKHQSRHIREIAYGCGKCGKTFPQKSQFITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCSECGRAFSEKSNLINHQRIHTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKPYGCSDCRKAFFEKSELVRHQTIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLLSHQMTHTGEKPFVCSKCGKAFSRKSQLVRHQRTHTGEKPYECNECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECTECGKAFGEKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECGICQKAFFEKSELIRHQRTHTGEKPYECSECRKAFREKSSLINHQRTHTGEKPFECSDCGKAFSRKSHLIPHQRTHTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYQCSECEKAFSQKSQLINHRRTHTLKKS", "length": 740, "header": "tr|F1RI76-1|F1RI76_PIG Isoform 1 of Zinc finger protein 84 OS=Sus scrofa OX=9823 GN=ZNF84 PE=3 SV=3 CANONICAL=F1RI76-1" }, "locus": { "chromosome": "14", "start_pos": 22572465, "end_pos": 22559894, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010667.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010667.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010390.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010390.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RI76", "url": "https://www.uniprot.org/uniprotkb/F1RI76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620909", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620909", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MSL7-1", "protein_name": "Zinc finger protein 84", "gene_name": "ZNF84", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTMLQGSFSFEDLSVDFTQKEWQLLDPHQKDLYKDVMLENYSSLVSLGYEVMKPGVILKLEQGEDPWTGDGEIPSSGSIDQVFQVNGHMTWHKDNKKFKNMKQDHECDALGKKFNLSMNFIPLRKSNKEGDIDGLILKHHLDFLIPKANYGRMEPADLNIFDKLFLHTKTEETDTWLKYYACDKVSYKKSQIIIYHRSRSGEKLYECSECRKRFSKKSSLIKHQSRHIREIAYGCGKCGKTFPQKSQFITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSQKSHLISHWRTHTGEKPYGCTECGRAFSEKSNLINHQRIHTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKPYGCSDCRKAFFEKSELIRHQTIHTGEKPYECSECGKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLLSHQMTHTGEKPFVCTKCGKAFSRKSQLVRHQRTHTGEKPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLATHQRTHTGEKPYACRDCEKAFSQKSQLNTHQRIHTGEKPYGCSLCQKAFFEKSELIRHQRTHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPFECNDCGKAFSRKSHLIPHQRTHTGERPYSCSECRKAFSQKSQLVNHQRIHTGEKPFQCSECGKAFSQKSQLINHRRTHTVKKS", "length": 736 }, "evidence": [ { "id": "F1RI76", "url": "https://omabrowser.org/oma/group/F1RI76/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P51523-1", "protein_name": "Zinc finger protein 84", "gene_name": "ZNF84", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTMLQESFSFDDLSVDFTQKEWQLLDPSQKNLYKDVMLENYSSLVSLGYEVMKPDVIFKLEQGEEPWVGDGEIPSSDSPEVWKVDGNMMWHQDNQDKLKIIKRGHECDAFGKNFNLNMNFVPLRKSNSEGDLDGLILKHHLDLLIPKGDYGKAESDDFNVFDNFFLHSKPEDTDTWLKYYDCDKYKESYKKSQIIIYHRNRLGEKLYECSECRKRFSKKPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRTHTGEKPYNCSQCGKAFSQKSQLTSHQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQRIHTGEKPFECRECGKAFSRKSQLVTHHRTHTGTKPFGCSDCRKAFFEKSELIRHQTIHTGEKPYECSECRKAFRERSSLINHQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRTHTGEKPYECSECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLATHQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECNECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIPHQRTHTGEKPYGCSECRKAFSQKSQLVNHQRIHTGEKPYRCIECGKAFSQKSQLINHQRTHTVKKS", "length": 738 }, "evidence": [ { "id": "F1RI76", "url": "https://omabrowser.org/oma/group/F1RI76/", "database": "OMA" } ], "glygen_name": "Human", "common_name": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RI76", "url": "https://www.uniprot.org/uniprotkb/F1RI76" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1RI76", "url": "https://www.uniprot.org/uniprotkb/F1RI76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RI76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI76" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 209, "end_pos": 236, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RI76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RI76" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 79, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 266, "end_pos": 268 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIA7-1", "uniprot_ac": "F1RIA7", "uniprot_id": "F1RIA7_PIG", "mass": { "chemical_mass": 26111.0, "monoisotopic_mass": 26111.0 }, "refseq": { "ac": "XP_003122718", "name": "transmembrane protein 109", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122718" }, "gene_names": [ { "name": "TMEM109", "type": "recommended", "evidence": [ { "id": "F1RIA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIA7" } ] }, { "name": "TMEM109", "type": "synonym", "evidence": [ { "id": "XP_003122718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122718" } ] } ], "protein_names": [ { "name": "Transmembrane protein 109", "type": "synonym", "evidence": [ { "id": "F1RIA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIA7/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 109", "type": "synonym", "evidence": [ { "id": "XP_003122718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122718" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIA7", "url": "https://www.uniprot.org/uniprotkb/F1RIA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM109", "url": "https://www.uniprot.org/uniprotkb/F1RIA7", "locus": { "chromosome": "2", "start_pos": 10828652, "end_pos": 10837062, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013110", "url": "https://www.ensembl.org/id/ENSSSCG00000013110" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013110", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013110", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511116", "url": "https://www.ncbi.nlm.nih.gov/gene/100511116", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511116", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511116", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFKVILM", "url": "https://omabrowser.org/oma/group/VFKVILM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIA7", "url": "https://www.orthodb.org/?gene=F1RIA7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14550", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14550", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14550:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14550:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14965", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14965", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122718", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RAI4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIA7", "url": "https://www.uniprot.org/uniprotkb/F1RIA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIA7-1", "url": "https://www.uniprot.org/uniprotkb/F1RIA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAGSSSPPGTHLFKVILMVLLALVLLHSVSCQSHRDFVSPGQQKKEAPVDLLSQIGRSVRGTLDAWIGPETTHLVSETLAQVMWAISSAISVAFFALSGIAAQLLNALGLEGDHLTQGLKLSPGQVQTFLLWGAGALVAYWLLSLLLGLVLALLGRILWGLKLVLFLAAFVALVRSVPDPSTRALLLLALLTLYALLSRLTGTRASGAQLEAKVRGLERQVEELRWRQRRAAKGPRSVEEE", "length": 243, "header": "tr|F1RIA7-1|F1RIA7_PIG Isoform 1 of Transmembrane protein 109 OS=Sus scrofa OX=9823 GN=TMEM109 PE=1 SV=1 CANONICAL=F1RIA7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RAI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAI4/entry", "sequence": { "sequence": "MAGAGSSSPPGTHLFKVILMVLLALVLLHSVSCQSHRDFVSPGQQKKEAPVDLLSQIGRSVRGTLDAWIGPETTHLVSETLAQVMWAISSAISVAFFALSGIAAQLLNALGLEGDHLTQGLKLSPGQVQTFLLWGAGALVAYWLLSLLLGLVLALLGRILWGLKLVLFLAAFVALVSSAFAKSPASCLMGSLLPALPSSQTTVSAGMLPSPPLPEWELLSSGLGGGAQSRRRRRRRRRQQRRCASLPFSFSRSSLGAEAACRLSPPHQSPGGSGWPPLPGPAHDVKRKEMPSSYC", "length": 295, "header": "tr|A0A5G2RAI4-1|A0A5G2RAI4_PIG Computationally mapped isoform of Transmembrane protein 109 OS=Sus scrofa OX=9823 GN=TMEM109 PE=1 SV=1 CANONICAL=F1RIA7-1" }, "locus": { "chromosome": "2", "start_pos": 10832211, "end_pos": 10828749, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087893.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087893.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067618.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067618.1" } ] } }, { "isoform_ac": "F1RIA7-1", "url": "https://www.uniprot.org/uniprotkb/F1RIA7/entry", "sequence": { "sequence": "MAGAGSSSPPGTHLFKVILMVLLALVLLHSVSCQSHRDFVSPGQQKKEAPVDLLSQIGRSVRGTLDAWIGPETTHLVSETLAQVMWAISSAISVAFFALSGIAAQLLNALGLEGDHLTQGLKLSPGQVQTFLLWGAGALVAYWLLSLLLGLVLALLGRILWGLKLVLFLAAFVALVRSVPDPSTRALLLLALLTLYALLSRLTGTRASGAQLEAKVRGLERQVEELRWRQRRAAKGPRSVEEE", "length": 243, "header": "tr|F1RIA7-1|F1RIA7_PIG Isoform 1 of Transmembrane protein 109 OS=Sus scrofa OX=9823 GN=TMEM109 PE=1 SV=1 CANONICAL=F1RIA7-1" }, "locus": { "chromosome": "2", "start_pos": 10832211, "end_pos": 10829893, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014330.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014330.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013944.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013944.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RIA7", "url": "https://www.uniprot.org/uniprotkb/F1RIA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511116", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511116", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IE05-1", "protein_name": "Transmembrane protein 109", "gene_name": "Tmem109", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGSHGSPSWSRHLFKAVLVVLVFVLLFHSSSSSQSYRDPPGQQKREASADLLTQIGRSLKETLDTWLGPETMHVISETLLQVMWAISSAISVACFALSGIAAQLLSALGLDGENLTQSLKLSPSQVQTLLLWGAAALVIYWLLSLLLGLVLALLGRILGGLKLVLFVAGFVGLVRSVPDPSTRALMLLALLTLYALLSRLTGSRGSGTHLEAKVRGLERQIEELRGRQRRATKAPRSMEEE", "length": 242 }, "evidence": [ { "id": "F1RIA7", "url": "https://omabrowser.org/oma/group/F1RIA7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3UBX0-1", "protein_name": "Voltage-gated monoatomic cation channel TMEM109", "gene_name": "Tmem109", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGAHSTPLWSRHLLKAVLMVLVALFLVHSASAQSHREFASPGQQKKETSADILTQIGRSLKEMLDTWLGPETMHVISETLLQVMWAISSAISVACFALSGIAAQLLSALGLDGEQLTQGLKLSPSQVQTLLLWGAAALVIYWLLSLLLGLVLALLGRILGGLKLVLFVAGFVALVRSVPDPSTRALMLLALLTLFALLSRLTGSRSSGSHLEAKVRGLERQIEELRGRQRRAAKMPRSMEEE", "length": 243 }, "evidence": [ { "id": "F1RIA7", "url": "https://omabrowser.org/oma/group/F1RIA7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BVC6-1", "protein_name": "Voltage-gated monoatomic cation channel TMEM109", "gene_name": "TMEM109", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASSISSPWGKHVFKAILMVLVALILLHSALAQSRRDFAPPGQQKREAPVDVLTQIGRSVRGTLDAWIGPETMHLVSESSSQVLWAISSAISVAFFALSGIAAQLLNALGLAGDYLAQGLKLSPGQVQTFLLWGAGALVVYWLLSLLLGLVLALLGRILWGLKLVIFLAGFVALMRSVPDPSTRALLLLALLILYALLSRLTGSRASGAQLEAKVRGLERQVEELRWRQRRAAKGARSVEEE", "length": 243 }, "evidence": [ { "id": "F1RIA7", "url": "https://omabrowser.org/oma/group/F1RIA7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator", "id": "GO:0042771", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042771", "evidence": [ { "database": "UniProtKB", "id": "F1RIA7", "url": "https://www.uniprot.org/uniprotkb/F1RIA7" } ], "pmid": "" }, { "name": "cellular response to gamma radiation", "id": "GO:0071480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071480", "evidence": [ { "database": "UniProtKB", "id": "F1RIA7", 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"https://www.ncbi.nlm.nih.gov/protein/XP_003122711", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RIC6", "url": "https://www.uniprot.org/uniprotkb/F1RIC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIC6-1", "url": "https://www.uniprot.org/uniprotkb/F1RIC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISQPTTKENIIVLTPSGINFLETEKSKPTNQKQDSVKKCLKAEVKVLATIQIMCGVMILGLGIMLASASFSPYFTHMFSILVNAAYPFVGAFSFILSGSLSIITEKKSTKLLAQSTLAANVLSSLSALSGFIFLSVRLAALDPAFQTCKLNERSPHPYFSLFQPFQQDCSMAKSILAGTMSMILICTVLEFFLAVLSAVVWWKQSYSDFPGGVLFLPQNHKNKSSMSPKAPHDPDYEELLAS", "length": 243, "header": "tr|F1RIC6-1|F1RIC6_PIG Isoform 1 of Membrane spanning 4-domains A6A OS=Sus scrofa OX=9823 GN=LOC100524972 PE=3 SV=2 CANONICAL=F1RIC6-1" }, "isoforms": [ { "isoform_ac": "F1RIC6-1", "url": "https://www.uniprot.org/uniprotkb/F1RIC6/entry", "sequence": { "sequence": 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"XP_003128497", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128497" } ] } ], "function": [ { "annotation": "May be involved in the intracellular transport of sterols or other lipids. May bind cholesterol or other sterols.", "evidence": [ { "database": "UniProtKB", "id": "F1RID6", "url": "https://www.uniprot.org/uniprotkb/F1RID6#function" }, { "database": "UniProtKB", "id": "ARBA00024750", "url": "https://www.uniprot.org/uniprotkb/ARBA00024750#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RID6", "url": "https://www.uniprot.org/uniprotkb/F1RID6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STARD5", "url": "https://www.uniprot.org/uniprotkb/F1RID6", "locus": { "chromosome": "7", "start_pos": 50107035, "end_pos": 50118629, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001788", "url": "https://www.ensembl.org/id/ENSSSCG00000001788" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001788", "url": 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lipid transfer protein 5 OS=Sus scrofa OX=9823 GN=STARD5 PE=1 SV=1 CANONICAL=F1RID6-1" }, "locus": { "chromosome": "7", "start_pos": 50118534, "end_pos": 50107512, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002003.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002003.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001954.2", "url": "https://www.ensembl.org/id/ENSSSCP00000001954.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier 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"https://www.ensembl.org/id/ENSSSCP00000049452.3" } ] } }, { "isoform_ac": "F1RIP7-1", "url": "https://www.uniprot.org/uniprotkb/F1RIP7/entry", "sequence": { "sequence": "MSQENSTWKRKALGDELAALRLQKLEQQQWWLFEKKQRRKRLEPVMVQANPDAALRPRRPWRREERHLGRRGPGNPFLRENVPEAHLHPGAHSVLGTVSCGGDGSGECGPLSSSTEADVSDMELEEVSMEDVPALPPPYEELPGTRRRGWPARQHPGGSAENESKSQDVGDGYEVPNLRPNSGMDGDGDHGDLASDKGEDLEEKKEESESTGRNSCCVADKEVSEAPEGMGGEGSGAAGSSPGLPPSAPGPRLGEDMAAYVMRPALFGRMVQCLISRDRRGVDKGFFPFYYLYLEAADGQKHFLLSGRKRKRSKTPNYLISLDRTDLSRDGDNFVGKVRSNALGTKFTIFDNGVNPERKNFVTETARIREELGAVCYETNFLGLRGPRKMTLIIPGIDAQNRRIGVQPQNEQESLLSRLQRGATQGLVLMQNKAPLWSDESGVYVLNFHGRVTRASVKNFQIVHRDDPDYLVLQFGRIAPDMFTMDFRFPLCPLQAFAICLSSLDWKLACG", "length": 511, "header": "tr|F1RIP7-1|F1RIP7_PIG Isoform 1 of TUB like protein 2 OS=Sus scrofa OX=9823 GN=TULP2 PE=3 SV=4 CANONICAL=F1RIP7-1" }, "locus": { "chromosome": "6", "start_pos": 54186166, "end_pos": 54177230, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003495.5", 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"https://www.uniprot.org/uniprotkb/F1RIP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1RIP7", "url": "https://www.uniprot.org/uniprotkb/F1RIP7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RIP7", "url": "https://www.uniprot.org/uniprotkb/F1RIP7" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "F1RIP7", "url": "https://www.uniprot.org/uniprotkb/F1RIP7" } ], "pmid": "" } ] }, { "name": "Molecular 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"start_pos": 1, "end_pos": 511, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RIP7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RIP7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIP7" }, { "id": "PF01167", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01167" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubby C-terminal", "eco_id": "ECO_0000259", "start_pos": 263, "end_pos": 505, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RIP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIP7" }, { "id": "PF16322", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubby 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chain of as well as pro-urokinase-type plasminogen activator.", "evidence": [ { "database": "UniProtKB", "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5#function" }, { "database": "UniProtKB", "id": "ARBA00057108", "url": "https://www.uniprot.org/uniprotkb/ARBA00057108#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRSS53", "url": "https://www.uniprot.org/uniprotkb/F1RIR5", "locus": { "chromosome": "3", "start_pos": 17396885, "end_pos": 17391219, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007765", "url": "https://www.ensembl.org/id/ENSSSCG00000007765" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007765", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007765", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511557", "url": "https://www.ncbi.nlm.nih.gov/gene/100511557", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511557", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511557", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SYMCTGC", "url": "https://omabrowser.org/oma/group/SYMCTGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIR5", "url": "https://www.orthodb.org/?gene=F1RIR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIR5-1", "url": "https://www.uniprot.org/uniprotkb/F1RIR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKQSWGPGLLILGAVVLIEGLQAAQRVCGQRGPGPPEPQEGNTVPGEWPWQASVRRQGLHLCSGSLVADTWVLTAAHCFEREAMTDLNSWSVVLGSLQHEGLSTGAEEVGVTALQLPRAYNHYSQGADLALLQLAHPVAHTPLCLPQPGHRFPFGTSCWATGWDQDPKDAPRTLRNLRLRLISRPTCNCLYDRLHQRLLASPARPGMLCGGPQPGVQGPCQGDSGGPVLCREADGHWVQAGIISFASSCAQEDTPVLLTDMAAHSSWLQARAQGAAFLAQNPEAPEMSDEDSCVACGSLKRGSPQAGAPSPWPWDARLKHQGKLACGGALVSEEVVLTAAHCFIGRQAPEEWTVGLGARSEERGLRQVILHGAYTHPEGGYDVALLLLAQPVTLGPSLRPLCLPYADHRLPDGEHGWVLGLARKGADTGSPQTVPVTLLGPRACSRLHATFGGDSVPILPGMVCTSVVGKPPGCEGLSGAPLVHEVRDRWFLAGLHSFGDACQGPTSPAAVFAALPTYENWVSSLDWQVYFAEEPEPEAEPGSCPANMSQPAGC", "length": 554, "header": "tr|F1RIR5-1|F1RIR5_PIG Isoform 1 of Serine protease 53 OS=Sus scrofa OX=9823 GN=PRSS53 PE=4 SV=1 CANONICAL=F1RIR5-1" }, "isoforms": [ { "isoform_ac": "F1RIR5-1", "url": "https://www.uniprot.org/uniprotkb/F1RIR5/entry", "sequence": { "sequence": "MKQSWGPGLLILGAVVLIEGLQAAQRVCGQRGPGPPEPQEGNTVPGEWPWQASVRRQGLHLCSGSLVADTWVLTAAHCFEREAMTDLNSWSVVLGSLQHEGLSTGAEEVGVTALQLPRAYNHYSQGADLALLQLAHPVAHTPLCLPQPGHRFPFGTSCWATGWDQDPKDAPRTLRNLRLRLISRPTCNCLYDRLHQRLLASPARPGMLCGGPQPGVQGPCQGDSGGPVLCREADGHWVQAGIISFASSCAQEDTPVLLTDMAAHSSWLQARAQGAAFLAQNPEAPEMSDEDSCVACGSLKRGSPQAGAPSPWPWDARLKHQGKLACGGALVSEEVVLTAAHCFIGRQAPEEWTVGLGARSEERGLRQVILHGAYTHPEGGYDVALLLLAQPVTLGPSLRPLCLPYADHRLPDGEHGWVLGLARKGADTGSPQTVPVTLLGPRACSRLHATFGGDSVPILPGMVCTSVVGKPPGCEGLSGAPLVHEVRDRWFLAGLHSFGDACQGPTSPAAVFAALPTYENWVSSLDWQVYFAEEPEPEAEPGSCPANMSQPAGC", "length": 554, "header": "tr|F1RIR5-1|F1RIR5_PIG Isoform 1 of Serine protease 53 OS=Sus scrofa OX=9823 GN=PRSS53 PE=4 SV=1 CANONICAL=F1RIR5-1" }, "locus": { "chromosome": "3", "start_pos": 17396501, "end_pos": 17391246, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008512.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008512.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008293.1", "url": "https://www.ensembl.org/id/ENSSSCP00000008293.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 506, "start_aa": "Thr", "end_pos": 506, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr506", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511557", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511557", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SNZ6-1", "protein_name": "Serine protease 53", "gene_name": "PRSS53", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLNSPGSHSHSPRVRNYWPSSSPAKAMTPDLLANWGWGRGGARETQVASLENQRTGSRLTWGSMKQSWRLKLFILGAVVLTEGLQAAQRACGQRGPGPPEPQEGNTMPGEWPWQASVRRQGIHICSGSLVADIWVLTAAHCFEKEAMTELNSWSVVLGSLQHEGLSPGAEEVGVTALQLPRAYNHYSQGSDLALLRLAHPIAHTPLCLPRPAHRFPFGTSCWATGWYQHTNDAPRTLRNLRLRLISRPTCNCLYNRLHQRSLASPARPGMLCGGPQPGMQGPCQGDSGGPVLCREPDGHWVQAGIISFASSCAREDTPVLLTDMAAHSSWLQARAQGAAFLTQNPETPEISDEDSCVACGSLRREGPQAGAPSPWPWDARLKHQGKLACGGALVSEEVVLTAAHCFIGRQTPEEWTVGLGVGPEESGLKQVILHGAYTHPEGGYDVALLLLAQPVTLGPSLRPLCLPYSDHRLPDGERGWVLGLARQGADTGSPQTVPVTLLGPRACSRLHAALGSILPGMVCTSVVGEPPSCEGLSGAPLVHEVRGTWFLAGLHSFGDACQGPARPAVFAALPTYENWVSSLDWQVYFAEEPEPEPEPEPEPGSCTANMSAVPGTLGQGSPARRGRSAQLPSGTARPAAAGSPSVASGGPSGPCGWSRSWRRWDNCTGLSHGCAGGSGGCPHGGRSARTARSERADLPGTACGSPHPHCAPGGPAGGWPAASAGGRPSRTQHSGNAGDRRGCAGGS", "length": 747 }, "evidence": [ { "id": "F1RIR5", "url": "https://omabrowser.org/oma/group/F1RIR5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A1ZA34-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "Dmel\\CG30091", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MCRAWVVLFAWMLTAGRGSARLLDEDCGVPMQLIPKIVGGVDAGELKNPWMALIKTNDEFICGGSVITNKFVLTAAHCMCTDEECIVKYTQLTVTLGVYHLLATGEHNHPHEIYNVERVYIHDSFAIQNYRNDIALLRLQKSIVYKPQIKPLCILLNDQLKPQTDLIQEFTAIGWGVTGNGKMSNNLQMVKIYRIDRKMCEAAFWYTFDYPMFCAGTAVGRDTCKRDSGGPLYIHMLFDGIKRATQLGIVSTGTEDCRGFGMYTDVMGHIDFIERIVLDADIEVVLPYIDLLDAGCLGNDTLNSWDRSGPDAIRSFEWLAEVYKDSFIISNGALISKTFVVTTAQLISESTALKVQLGQGDVHTYAVASVHKHPKFVSLAQNDIALLKLGEEVQYTESIRPICLPSLSNKAEQQKFQRRAADPALNLIAVGWGTPTNVVVRRTNASKCYREDHQDIGEQQLCMESPSPHLLRVGIGSPLVNPLTHGNRRAFSLVGLASFGRLEPFASNVYTNVLEYLDWIGEMVKA", "length": 526 }, "evidence": [ { "id": "F1RIR5", "url": "https://omabrowser.org/oma/group/F1RIR5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2L4Q9-1", "protein_name": "Serine protease 53", "gene_name": "PRSS53", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKWCWGPVLLIAGATVLMEGLQAAQRACGQRGPGPPKPQEGNTVPGEWPWQASVRRQGAHICSGSLVADTWVLTAAHCFEKAAATELNSWSVVLGSLQREGLSPGAEEVGVAALQLPRAYNHYSQGSDLALLQLAHPTTHTPLCLPQPAHRFPFGASCWATGWDQDTSDAPGTLRNLRLRLISRPTCNCIYNQLHQRHLSNPARPGMLCGGPQPGVQGPCQGDSGGPVLCLEPDGHWVQAGIISFASSCAQEDAPVLLTNTAAHSSWLQARVQGAAFLAQSPETPEMSDEDSCVACGSLRTAGPQAGAPSPWPWEARLMHQGQLACGGALVSEEAVLTAAHCFIGRQAPEEWSVGLGTRPEEWGLKQLILHGAYTHPEGGYDMALLLLAQPVTLGASLRPLCLPYPDHHLPDGERGWVLGRARPGAGISSLQTVPVTLLGPRACSRLHAAPGGDGSPILPGMVCTSAVGELPSCEGLSGAPLVHEVRGTWFLAGLHSFGDACQGPARPAVFTALPAYEDWVSSLDWQVYFAEEPEPEAEPGSCLANISQPTSC", "length": 553 }, "evidence": [ { "id": "F1RIR5", "url": "https://omabrowser.org/oma/group/F1RIR5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q571E5-1", "protein_name": "Serine protease 53", "gene_name": "Prss53", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRQSWRPELLIVGAVVVIEGLQAAQRACGQRGPGPPEPQEGNTLPGEWPWQASVRRQGVHICSGSLVADTWVLTAAHCFEKMATAELSSWSVVLGSLKQEGQSPGAEEVGVAALQLPKAYNHYSQGSDLALLQLTHPTVQTTLCLPQPTYHFPFGASCWATGWDQNTSDVSRTLRNLRLRLISRPTCNCLYNRLHQRLLSNPARPGMLCGGAQPGEQGPCQGDSGGPVMCREPDGHWVQVGIISFTSKCAQEDTPVLLTDMAVHSSWLQAHVHEAAFLVQAPGVVKMSDENSCVACGSLRSAGPQAGALSQWPWDARLKHHGKLACGGALVSEVVVLTAAHCFIGRQTLEEWSVGLGAGPEEWGLKQLILHGAYTHPEGGYDVAFLLLAQPVTLGPGLRPLCLPYADHHLPDGEHGWVLGLTQKAGINYPQTVPVTVLGPMACSRQHAAPGGTGIPILPGMVCTTVVGEPPHCEGLSGAPLVHEIRGTWFLVGLHSFGDTCQSSAKPAVFAALSAYEDWISNLDWQVYFAEEPEPEAETGSCLVNSSQPASC", "length": 552 }, "evidence": [ { "id": "F1RIR5", "url": "https://omabrowser.org/oma/group/F1RIR5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6TEK4-1", "protein_name": "Vitamin K epoxide reductase complex subunit 1", "gene_name": "Vkorc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTTWRSPGRLRLALCLAGLALSLYALHVKAARARNEDYRALCDVGTAISCSRVFSSRWGRGFGLVEHVLGADSILNQSNSIFGCMFYTIQLLLGCLRGRWASILLILSSLVSVAGSLYLAWILFFVLYDFCIVCITTYAINAGLMLLSFQKVPEHKVKKP", "length": 161 }, "evidence": [ { "id": "F1RIR5", "url": "https://omabrowser.org/oma/group/F1RIR5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1RIR5", "url": "https://www.uniprot.org/uniprotkb/F1RIR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIR5" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 273, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 506 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 547, "end_pos": 549 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIS6-1", "uniprot_ac": "F1RIS6", "uniprot_id": "F1RIS6_PIG", "mass": { "chemical_mass": 24774.0, "monoisotopic_mass": 24774.0 }, "refseq": {}, "gene_names": [ { "name": "MMAB", "type": "recommended", "evidence": [ { "id": "F1RIS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ] } ], "protein_names": [ { "name": "Corrinoid adenosyltransferase MMAB", "type": "recommended", "evidence": [ { "id": "F1RIS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS6/entry#names_and_taxonomy" } ] }, { "name": "ATP:co(I)rrinoid adenosyltransferase MMAB", "type": "synonym", "evidence": [ { "id": "F1RIS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Converts cob(I)alamin to adenosylcobalamin (adenosylcob(III)alamin), a coenzyme for methylmalonyl-CoA mutase, therefore participates in the final step of the vitamin B12 conversion. Generates adenosylcobalamin (AdoCbl) and directly delivers the cofactor to MUT in a transfer that is stimulated by ATP-binding to MMAB and gated by MMAA.", "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6#function" }, { "database": "UniProtKB", "id": "ARBA00056747", "url": "https://www.uniprot.org/uniprotkb/ARBA00056747#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MMAB", "url": "https://www.uniprot.org/uniprotkb/F1RIS6", "locus": { "chromosome": "14", "start_pos": 41373205, "end_pos": 41357637, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009932", "url": "https://www.ensembl.org/id/ENSSSCG00000009932" } ] } } ], "crossref": [ { "id": "F1RIS6", "url": "https://alphafold.ebi.ac.uk/entry/F1RIS6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009932", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009932", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR016030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12213", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12213", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12213:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12213:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9759218", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9759218", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "56796", "url": "https://www.rhea-db.org/rhea/56796", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIS6-1", "url": "https://www.uniprot.org/uniprotkb/F1RIS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIWGPGGRLGLRGCLGARRLLCLRFQSRGPQGVEDGERPQPSSKTPKIPKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELIAEKGHPFAEELQKIQCSLQDIGAALATPRSSAREAHLKHTTFEVGPILELEQWIDRYSSQLPPLTAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQTGETDVNVAKFLNRSFRLPPSAPPDSATISSR", "length": 227, "header": "tr|F1RIS6-1|F1RIS6_PIG Isoform 1 of Corrinoid adenosyltransferase MMAB OS=Sus scrofa OX=9823 GN=MMAB PE=1 SV=3 CANONICAL=F1RIS6-1" }, "isoforms": [ { "isoform_ac": "F1RIS6-1", "url": "https://www.uniprot.org/uniprotkb/F1RIS6/entry", "sequence": { "sequence": "MAIWGPGGRLGLRGCLGARRLLCLRFQSRGPQGVEDGERPQPSSKTPKIPKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELIAEKGHPFAEELQKIQCSLQDIGAALATPRSSAREAHLKHTTFEVGPILELEQWIDRYSSQLPPLTAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQTGETDVNVAKFLNRSFRLPPSAPPDSATISSR", "length": 227, "header": "tr|F1RIS6-1|F1RIS6_PIG Isoform 1 of Corrinoid adenosyltransferase MMAB OS=Sus scrofa OX=9823 GN=MMAB PE=1 SV=3 CANONICAL=F1RIS6-1" }, "locus": { "chromosome": "14", "start_pos": 41370157, "end_pos": 41357654, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010884.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010884.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010599.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010599.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9759218", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9759218", "resource": "Reactome", "description": "Cobalamin (Cbl) metabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ], "pmid": "" }, { "name": "cobalamin binding", "id": "GO:0031419", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031419", "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ], "pmid": "" }, { "name": "corrinoid adenosyltransferase activity", "id": "GO:0008817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008817", "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cobalamin metabolic process", "id": "GO:0009235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009235", "evidence": [ { "database": "UniProtKB", "id": "F1RIS6", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "56796", "name": "", "equation": "cob(I)alamin-[corrinoid adenosyltransferase] + ATP = apo-[corrinoid adenosyltransferase] + adenosylcob(III)alamin + triphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "56796", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/56796" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIS6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 227, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RIS6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RIS6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIS6" }, { "id": "PF01923", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cobalamin adenosyltransferase-like", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 209, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIT4-1", "uniprot_ac": "F1RIT4", "uniprot_id": "F1RIT4_PIG", "mass": { "chemical_mass": 46921.0, "monoisotopic_mass": 46921.0 }, "refseq": { "ac": "XP_001929209", "name": "protein FAM222A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929209" }, "gene_names": [ { "name": "FAM222A", "type": "recommended", "evidence": [ { "id": "F1RIT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIT4" } ] }, { "name": "FAM222A", "type": "synonym", "evidence": [ { "id": "XP_001929209", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929209" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 222 member A", "type": "synonym", "evidence": [ { "id": "F1RIT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIT4/entry#names_and_taxonomy" } ] }, { "name": "protein FAM222A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929209", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929209" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIT4", "url": "https://www.uniprot.org/uniprotkb/F1RIT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM222A", "url": "https://www.uniprot.org/uniprotkb/F1RIT4", "locus": { "chromosome": "14", "start_pos": 41177355, "end_pos": 41233331, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009927", "url": "https://www.ensembl.org/id/ENSSSCG00000009927" } ] } } ], "crossref": [ { "id": "F1RIT4", "url": "https://alphafold.ebi.ac.uk/entry/F1RIT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009927", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009927", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153422", "url": "https://www.ncbi.nlm.nih.gov/gene/100153422", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153422", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153422", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QQHLRMY", "url": "https://omabrowser.org/oma/group/QQHLRMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RIT4", "url": "https://www.orthodb.org/?gene=F1RIT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16070", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16070", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16070:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16070:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929209", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929209", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RIT4", "url": "https://www.uniprot.org/uniprotkb/F1RIT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RIT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLACLQRTQNAPGQHLACPTKSLELRKCETVGSSMHSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYSPYPQHTAGYQGLLAIVKAAVSSSGAAAPAGPAKSVLKSAEGKRTKLSPAAVQVGIAPYPAPSTLGPLAYPKPPEVPAPPPGLPAAAATAASVIPLPGRGLPLPPSNLPSIHSILYQLNQQCQAPGAAPAACQAVAVPHPSPAKHGPMPSFPSMAYSATAGLPDCRKGTELGQGSTPALTLAGATKPAGYAEGGLDYLLWPQKPPPPPPQPLRAYSGGAVASKSPESCAGRVYERASGSPLNCGVGLPASFTVGQYFATPWNSVLVTPTSDCYNPAAAAVAVTELGPGAARELAGPPAETLSGLPSKSVCNTAVLSSSLQSLEYLINDIRPPCIKEQMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 454, "header": "tr|F1RIT4-1|F1RIT4_PIG Isoform 1 of Family with sequence similarity 222 member A OS=Sus scrofa OX=9823 GN=FAM222A PE=4 SV=2 CANONICAL=F1RIT4-1" }, "isoforms": [ { "isoform_ac": "F1RIT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RIT4/entry", "sequence": { "sequence": "MLACLQRTQNAPGQHLACPTKSLELRKCETVGSSMHSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYSPYPQHTAGYQGLLAIVKAAVSSSGAAAPAGPAKSVLKSAEGKRTKLSPAAVQVGIAPYPAPSTLGPLAYPKPPEVPAPPPGLPAAAATAASVIPLPGRGLPLPPSNLPSIHSILYQLNQQCQAPGAAPAACQAVAVPHPSPAKHGPMPSFPSMAYSATAGLPDCRKGTELGQGSTPALTLAGATKPAGYAEGGLDYLLWPQKPPPPPPQPLRAYSGGAVASKSPESCAGRVYERASGSPLNCGVGLPASFTVGQYFATPWNSVLVTPTSDCYNPAAAAVAVTELGPGAARELAGPPAETLSGLPSKSVCNTAVLSSSLQSLEYLINDIRPPCIKEQMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 454, "header": "tr|F1RIT4-1|F1RIT4_PIG Isoform 1 of Family with sequence similarity 222 member A OS=Sus scrofa OX=9823 GN=FAM222A PE=4 SV=2 CANONICAL=F1RIT4-1" }, "locus": { "chromosome": "14", "start_pos": 41202789, "end_pos": 41178589, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010878.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010878.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010593.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010593.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 265, "start_aa": "Thr", "end_pos": 265, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr265", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RIT4", "url": "https://www.uniprot.org/uniprotkb/F1RIT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153422", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153422", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MTD2-1", "protein_name": "Family with sequence similarity 222 member A", "gene_name": "FAM222A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLACLQRTQNAPGQHLACPTKSLELRKCETVASSMHSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYSPYPPHTAGYQGLLAIVKAAVSSSSSAAAPAGPAKSVLKSAEGKRTKLSPAAVQVGVAPYPAPSTLGPLAYPKPPEVPAPPPGLPAAAAPAAAVIPLPGRGLPLPPSNLPSIHSLLYQLHQQCQAPGAAPAACQAVPGPPPSPAKHGPVPGFPRTAYSATAGPPECRKGAELGQGSTPAALTLAGAAKPAGYADGGLDYLLWPQKPPPPPPPPPQPLRAYGGGALASKSPEACGGRAYERASGSPLNCGVGLPASFTVGQYFAAPWNSVLVTPTSDCYNPAAAAAAAAAAAAAAGTELGPGAARELAGPPAETLSGLPSKSVCNTAVLSSSLQSLEYLINDIRPPCIKERMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 467 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8M2BCF5-1", "protein_name": "Protein FAM222A", "gene_name": "fam222aa", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLACLQRRQNPAPQHNPAVCSSSSSKSLEPTQHINRKCELTVPMPSPRYPSAAELDAYAQKTASSPLSIKIFPTNIRVPQHKHLNRTVNGYDTTGQRYSPYPHLHTGGYQGLLAIVKVSSSSSSSCSSFVPSAKGVLKNSEGRRTKLSPAQIAVAPYPPPNSSTLGHCHGQIVYHTGPPKPPEATTLSVPPNVTVAGSVIPVAGGRGLNLPPQSNLPSIQSIIYQINQHCQAQALQQVCQNGTSTGPPNPSPSKQGTTNSSGGTYVTGVAPQGNMPYSGTVIPGQNGEVLKAGVYPEGMDYLLWQKQQHHHQQQQAVLRMYSGGSGGGGAISKSPETCGPVGSIMLGGAQVSSSRGYPMTASTSGGGGLEKVSSSPLNCVGMHGNFSVGQYFAPPWNSVLVTPDSDCYNPQELPGATTTAGPVTGHRELGFPHHHQHPHHHHHHHHQHHHHHHPPIDSTGGLCCSLPSKSLCNTSVLSSSLQSLEYLINDIHPPCIKEQMLGKGYETVSVPRLLDHQHAHIRLPVYR", "length": 527 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0ZET9-1", "protein_name": "Family with sequence similarity 222 member A", "gene_name": "FAM222A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPRGCHAPQAVPVGGWGPRRCRPPPAVSATRRWPLHHPSWGHDHHRNRCTSKGGKQQNPTGKEGRRVAGAVPVQLGQGSVPTCPHVSPQCQHGATGIHKALSTGTWDPSIGGLCVCQHSPRCVCFLPSVVQIFRFLKSAGSFAEREGDCWSTLGALKMLRLPHYVGAEHLIPKLGETAAPMHSPRYPSPAELDAYAQKVANSPLTIKIFPTNIRVPQHKHLNRTVNGYDTTGQRYSPYPVHAGGYQGLLAIVKASSKSVVKNAEGKRTKLSPAQAGVAPYPSSSTLAPGPSCAGPLSYHQKQLEGPVPPNVTVAGSALPLAGRGLALPPSNLPSIQSIIYQLNQQCQAQASQPACPALPAAHPSPAKHGTFPTMASAYAVLPECRKGAELPLGSTPALGPKAGLYPDGVDYLLWQQKQQQHLRVYSGGSGALSKSPEACAAASRPYGPAGEKVSSSPLNCMHGNFAVGQYFVPPWNSVLVTPTSDCYNPPPELGPVPRELGVPPAEGLPSKALCNTSILSSSLQSLEYLINDIHPPCIKEQMLGKGYETVSVPRLLDHQHAHIRLPVYR", "length": 569 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZY38-1", "protein_name": "Family with sequence similarity 222, member A", "gene_name": "Fam222a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLACLQRTQNPPGQHLTCPSKSLELRKCESVASSMPSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYNPYPQHTTGYQGLLAIVKAAVSSTAATPAGHTKSVLKSVEGKRTKLSPATVQVGIAPYPVPSTLGPLAYPKPPEAPAPPPNLPAAATATSVIPLPGRGLPLPPSNLPSIHSILYQLNQQCQAPGVAPSACQGVAVPHPSPAKHGPVPSFPRVAYSATAGLPDCRKGTELSQGATPALTLAGATKPAGYSEGGLDYLLWPQKPPPPPPQPLRAYGSSSTVASKSPETCSGRAFERANGSPHNCGMGLPGGFTVGQYFAAPWNSVLVTPTSDCYNAAAAAVVTELGPGAARELAGPPVDTLSGLTSKSVCNTAVLSSSLQSLEYLINDIRPPCIKEQMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 452 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HI78-1", "protein_name": "Protein FAM222A", "gene_name": "Fam222a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLACLQRTQNPPGQHLVCPSKSLELRKCESVASPMRSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYSPYPQHSAGYQGLLAIVKAAVVSSSSAVPSGHTKSVLKSVEGKRTKLSPATVQVGIAPYPVPSTLGPLAYPKPPEAPAPPPSLPAAATATSVIPLPGRGLPLPPSNLPSIHSILYQLNQQCQAPGAAPSACQGVAVPHPSPAKHGPVPNFPSMAYSATAGLPDCRKGTELSQGATPALTLPGATKPAGYADGGLDYLLWPQKPPPPPPQPLRAYSSSTVAKSPETCGGRAFERANGSPHNCGVGLPTSFTVGQYFAAPWNSVLVTPTSDCYNPAAAAVVTELGPGAARELTGPPADTLSGLASKSVCNTAVLSSSLQSLEYLINDIRPPCIKEQMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 451 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5U5X8-1", "protein_name": "Protein FAM222A", "gene_name": "FAM222A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLACLQRTQNAPGQHLACPSKSLELRKCEAVASAMHSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYSPYPQHTAGYQGLLAIVKAAVSSSSTAAPAGPAKSVLKSAEGKRTKLSPAAVQVGIAPYPVPSTLGPLAYPKPPEAPAPPPGLPAAATAASVIPLPGRGLPLPPSNLPSIHSLLYQLNQQCQAPGAAPPACQGMAIPHPSPAKHGPVPSFPSMAYSAAAGLPDCRKGTELGQGATQALTLAGAAKPAGYADSGLDYLLWPQKPPPPPPQPLRAYSGSTVASKSPEACGGRAYERASGSPLNCGVGLPTSFTVGQYFAAPWNSVLVTPTSDCYNPAAAVVVTELGPGAARELAGPPADALSGLPSKSVCNTSVLSSSLQSLEYLINDIRPPCIKEQMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 452 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PGH4-1", "protein_name": "Protein FAM222A", "gene_name": "Fam222a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLACLQRTQNPPGQHLACPSKSLDLRKCESVASSMHSSRYPSPAELDAYAEKVANSPLSIKIFPTNIRVPQHKHLSRTVNGYDTSGQRYSPYPQHTAGYQGLLAIVKAAVSSSAHAPAGHPKSVLKSVEGKRTKLSPATVQVGIAPYPVPSTLGPLAYPKPPEAPAPPPSLPAAATATSVIPLPGRGLPLPPSNLPSIHSILYQLNQQCQAPGAAPSACQGVAVPHPSPAKHGPVPSFPNLAYSATAGLPDCRKGTELSQGATPALTLAGATKPAGYAEGGLDYLLWPQKPPPPPPQPLRAYSSSTVAGKSQSPEICGGRAFERANGSPHNCGMGLPGSFTVGQYFAAPWNSVLVTPTSDCYNPAAAAVVTELAPGAARELAGPPGDVLSGLTSKSVCNTAVLSSSLQSLEYLINDIRPPCIKEQMLGKGYETVAVPRLLDHQHAHIRLPVYR", "length": 453 }, "evidence": [ { "id": "F1RIT4", "url": "https://omabrowser.org/oma/group/F1RIT4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 454, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", 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Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RIV1", "url": "https://www.uniprot.org/uniprotkb/F1RIV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523956", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523956", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q1RMW2-1", "protein_name": "Transmembrane protein 184A", "gene_name": "TMEM184A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"MNAGPSWTKAQHAKNPARRRQSKPQGPPGSSQLKSSPGGGGPQRTEGKRKEGTSSGGNPERALGASGNRSFLDFPSLEIIKGDADDSDSASDLSDSERVPVLPSPLTPPDLRLRAEEIDPAHEHLRPGQGPAKPDLRYPDFLPAPFNSWDLRDMAVLLHSERRAEAGPRAGGLLGRYIDRLVQLEWLQIQTIQCEKGKGPKARPPTAPGASGALKSPGRSKLMASALSRPPQEGPRKSGPSRKKDLPLEEVQPSCRAFEAPPAPLDALSSGRLCSQKQSLNMRPEEKRKKPSKSSQLQPWDLSCADRDSSGPKLESKGNLRVPRPSAGILDSADSYKACRAQAHALLKKKGNANHCARAPVSSEKKLKTNGVKCINSNKN", "length": 380, "header": "tr|F1RJ11-1|F1RJ11_PIG Isoform 1 of Family with sequence similarity 217 member B OS=Sus scrofa OX=9823 GN=FAM217B PE=4 SV=2 CANONICAL=F1RJ11-1" }, "isoforms": [ { "isoform_ac": "F1RJ11-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ11/entry", "sequence": { "sequence": "MNAGPSWTKAQHAKNPARRRQSKPQGPPGSSQLKSSPGGGGPQRTEGKRKEGTSSGGNPERALGASGNRSFLDFPSLEIIKGDADDSDSASDLSDSERVPVLPSPLTPPDLRLRAEEIDPAHEHLRPGQGPAKPDLRYPDFLPAPFNSWDLRDMAVLLHSERRAEAGPRAGGLLGRYIDRLVQLEWLQIQTIQCEKGKGPKARPPTAPGASGALKSPGRSKLMASALSRPPQEGPRKSGPSRKKDLPLEEVQPSCRAFEAPPAPLDALSSGRLCSQKQSLNMRPEEKRKKPSKSSQLQPWDLSCADRDSSGPKLESKGNLRVPRPSAGILDSADSYKACRAQAHALLKKKGNANHCARAPVSSEKKLKTNGVKCINSNKN", "length": 380, "header": "tr|F1RJ11-1|F1RJ11_PIG Isoform 1 of Family with sequence similarity 217 member B OS=Sus scrofa OX=9823 GN=FAM217B PE=4 SV=2 CANONICAL=F1RJ11-1" }, "locus": { "chromosome": "17", "start_pos": 59971648, "end_pos": 59970509, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058004.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058004.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032014.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032014.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 107, "start_aa": "Thr", "end_pos": 107, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr107", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ11", "url": "https://www.uniprot.org/uniprotkb/F1RJ11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102162416", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162416", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LU95-1", "protein_name": "Protein FAM217B", "gene_name": "Fam217b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDFHQKSSMNAGSSWNQEQHSKTSSGKRQSRSQGLQASSHLGSSLLGISQPAADKLIRTISTEGRQDQERTVLSSRCQAASGSKLFLEFQSMKIIKDGTDEDSASDLSDSERVAIPPSPFTPPDLNLRAEEIDPVSFSLYPDPRLAEPEHCYPDFLPPPFSSWDLQDMAVAMNTECRSEALPRATGFLGKYIDRLLQLEWLQVQTVQCEKARAAKARPPGASGMLKSPRRGKLLTSVLSKPLLSPEGIPKPGPSRKKGFHHEEIHPSYYTFETSPRSVDGPGRPRLCSQKQAPEVRMEKKKKSSKAPKLHLCAPPCAEGSPALEANGNIRIPTKSAVLDPRDSCGASRSQAHLDLKKKGNANNYGLTSSSREKKLKTNGGKQSMYKLK", "length": 389 }, "evidence": [ { "id": "F1RJ11", "url": "https://omabrowser.org/oma/group/F1RJ11/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9S8L1-1", "protein_name": "Family with sequence similarity 217 member B", "gene_name": "FAM217B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"Ensembl Transcript", "id": "ENSSSCT00000010368.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010368.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010098.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010098.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { 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"UniProtKB", "id": "F1RJ35", "url": "https://www.uniprot.org/uniprotkb/F1RJ35" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1RJ35", "url": "https://www.uniprot.org/uniprotkb/F1RJ35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RJ35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 151, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RJ35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RJ35" } ], 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525125", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525125", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PDKAFDQ", "url": "https://omabrowser.org/oma/group/PDKAFDQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJ55", "url": "https://www.orthodb.org/?gene=F1RJ55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47114:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47114:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193634", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193634", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131799", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131799", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RJ55", "url": "https://www.uniprot.org/uniprotkb/F1RJ55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ55-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALMEYQILKMSPSLFILLLLTPGILCICPLQCICTERHRHVDCSGRNLTTLPSGLQENIIHLNLSYNHFTDLHNQLTQYTNLRTLDISNNRLESLPAQLPRSLWNMSAANNNIKLLEKSDTAYQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSHNSLTQILPGTLINLTNLTHLYLHNNKFTFIPDQAFDQLLQLQEITLYNNRWSCDHQQNITYLLKWMMETKAHVIGTPCSSQISSLKEHSIYPTPPGFTSSLFTLSGIQTVDTINSLSMVTQSKVTKIPKQYRTKETFGATLSKDTTFTSTDKAFVPYPEDTSTEMINSHEAAAATLTIHLQDGMVTNTSLTSSTKSSPTPMTLSITSGMPNNFSEMPQQSTTLNLRREETTTNVKTRSPSSVANAWKVNALFLLMLNAVVMLAV", "length": 443, "header": "tr|F1RJ55-1|F1RJ55_PIG Isoform 1 of Oligodendrocyte-myelin glycoprotein OS=Sus scrofa OX=9823 GN=OMG PE=1 SV=2 CANONICAL=F1RJ55-1" }, "isoforms": [ { "isoform_ac": "F1RJ55-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ55/entry", "sequence": { "sequence": "MALMEYQILKMSPSLFILLLLTPGILCICPLQCICTERHRHVDCSGRNLTTLPSGLQENIIHLNLSYNHFTDLHNQLTQYTNLRTLDISNNRLESLPAQLPRSLWNMSAANNNIKLLEKSDTAYQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSHNSLTQILPGTLINLTNLTHLYLHNNKFTFIPDQAFDQLLQLQEITLYNNRWSCDHQQNITYLLKWMMETKAHVIGTPCSSQISSLKEHSIYPTPPGFTSSLFTLSGIQTVDTINSLSMVTQSKVTKIPKQYRTKETFGATLSKDTTFTSTDKAFVPYPEDTSTEMINSHEAAAATLTIHLQDGMVTNTSLTSSTKSSPTPMTLSITSGMPNNFSEMPQQSTTLNLRREETTTNVKTRSPSSVANAWKVNALFLLMLNAVVMLAV", "length": 443, "header": "tr|F1RJ55-1|F1RJ55_PIG Isoform 1 of Oligodendrocyte-myelin glycoprotein OS=Sus scrofa OX=9823 GN=OMG PE=1 SV=2 CANONICAL=F1RJ55-1" }, "locus": { "chromosome": "12", "start_pos": 43572191, "end_pos": 43570037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019320.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019320.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018807.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018807.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 272, "start_aa": "Thr", "end_pos": 272, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr272", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ55", "url": "https://www.uniprot.org/uniprotkb/F1RJ55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525125", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525125", "resource": "KEGG Pathway" }, { "id": "R-SSC-193634", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193634", "resource": "Reactome", "description": "Axonal growth inhibition (RHOA activation)" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C1K8-1", "protein_name": "Oligodendrocyte-myelin glycoprotein", "gene_name": "OMG", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEHQILKTSTCLLVLLFFIPTVLGICPSNCTCSGNNRNVDCSGRNLTVLPHGLQDNITYLNLSFNQFVDLDHQLTRFSNLRTLDISNNWLKNVPAHLPKSLWELYAINNNIKVLQKLDTAYQWNLKVLDVSRNMVERAVLINNTLSSLKFLNLSSNKLWTVPTNMPYNIETVDLSNNFLSQILPGTLVRLQHLTSLYLHNNKFTYIPDKAFDQLFQLQVVTLYNNPWSCSNEQNISYLLKWVHSTTARVRGAPCADQSMLWANVTPTSATAPDASFMIKGMKAADTPAAAEPTQMTKMHKQFKAKEITTLASLSQTVLFTSTDRPLLLYPEELTTRKVSAYEAAATHTIYIKDTTEVNSSLTHSTGSSTTPMTLSITSGMPTNYSRMPQSTTATLRREEATTSVLNTDVPSKASICAICLFYAVMLNAVAAFIG", "length": 434 }, "evidence": [ { "id": "F1RJ55", "url": "https://omabrowser.org/oma/group/F1RJ55/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6Q889-1", "protein_name": "Oligodendrocyte-myelin glycoprotein", "gene_name": "OMG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALMEYQILKMSPSLFILLFLTPGILCICPLQCICTERHRHVDCSGRNLTTLPSGLQENIIHLNLSYNHFTDLHNQLTQYTNLRTLDISNNRLESLPAQLPRSLWNMSAANNNIKLLEKSDTAYQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHTVDLSNNSLTQILPGTLINLTNLTHLYLHNNKFTFIPDQAFDQLFQLQEITLYNNRWSCDHHQNITYLLKWMMETKAHVIGTPCSSQISSLKEHSIYPTPSGFTSSLFTVSGMQTVDTINSLSTVTQSKVTKIPKQYRTKETTFGATLSKDTTLTSTDKAFVPYPEDTSTETINSREAAAATLTIHLQDGMVTNTSLTSSTKSSPTPMTLSITSGMPNDFSEMPQQSTTLNLRREETTTDGKTRLPSVASAWKVNASFLLMLNAVVMLAV", "length": 443 }, "evidence": [ { "id": "F1RJ55", "url": "https://omabrowser.org/oma/group/F1RJ55/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7EYB9-1", "protein_name": "Oligodendrocyte-myelin glycoprotein", "gene_name": "Omg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALMEYQILKMSSCLFILLFLTPGILCICPLQCICTERHRHVDCSGRNLTTLPPGLQENIIHLNLSYNHFTDLHNQLTPYTNLRTLDISNNRLESLPAQLPRSLWNMSAANNNIKLLDKSDTAYQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSNNSLTQILPGTLINLTNLTHLYLHNNKFTFIPDQSFDQLLQLQEITLHNNRWSCDHTQNITYLLKWMMETKAHVIGIPCSKQVSSLKEQSMYPTPPGFTSSLFTMSEMQTVDTINSLSMVTQPKVTNIPKQYRGKDTTFGVTLSKDTTFSSTDRALEPYPEDTPTEMTSSREAAAATLTIHLQDGMSSNASLTSAAKSSPAPVTLSITSGMPNNFSEMPQQSTTLNLRREETTANVKTQPPSSASAWKVNASLLLMLNAVVMLAG", "length": 443 }, "evidence": [ { "id": "F1RJ55", "url": "https://omabrowser.org/oma/group/F1RJ55/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23515-1", "protein_name": "Oligodendrocyte-myelin glycoprotein", "gene_name": "OMG", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEYQILKMSLCLFILLFLTPGILCICPLQCICTERHRHVDCSGRNLSTLPSGLQENIIHLNLSYNHFTDLHNQLTQYTNLRTLDISNNRLESLPAHLPRSLWNMSAANNNIKLLDKSDTAYQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSNNSLTQILPGTLINLTNLTHLYLHNNKFTFIPDQSFDQLFQLQEITLYNNRWSCDHKQNITYLLKWMMETKAHVIGTPCSTQISSLKEHNMYPTPSGFTSSLFTVSGMQTVDTINSLSVVTQPKVTKIPKQYRTKETTFGATLSKDTTFTSTDKAFVPYPEDTSTETINSHEAAAATLTIHLQDGMVTNTSLTSSTKSSPTPMTLSITSGMPNNFSEMPQQSTTLNLWREETTTNVKTPLPSVANAWKVNASFLLLLNVVVMLAV", "length": 440 }, "evidence": [ { "id": "F1RJ55", "url": "https://omabrowser.org/oma/group/F1RJ55/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q63912-1", "protein_name": "Oligodendrocyte-myelin glycoprotein", "gene_name": "Omg", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEYQILKMSSCLFILLFLTPGILCICPLQCTCTERHRHVDCSGRNLTTLPPGLQENIIHLNLSYNHFTDLHNQLTPYTNLRTLDISNNRLESLPAQLPRSLWNMSAANNNIKLLDKSDTAYQWNLKYLDVSKNMLEKVVLIKNTLRSLEVLNLSSNKLWTVPTNMPSKLHIVDLSNNSLTQILPGTLINLTNLTHLYLHNNKFTFIPEQSFDQLLQLQEITLHNNRWSCDHKQNITYLLKWVMETKAHVIGTPCSKQVSSLKEQSMYPTPPGFTSSLFTMSEMQTVDTINSLSMVTQPKVTKTPKQYRGKETTFGVTLSKDTTFSSTDRAVVAYPEDTPTEMTNSHEAAAATLTIHLQDGMSSNASLTSATKSPPSPVTLSIARGMPNNFSEMPRQSTTLNLRREETTANGNTRPPSAASAWKVNASLLLMLNAVVMLAG", "length": 440 }, "evidence": [ { "id": "F1RJ55", "url": "https://omabrowser.org/oma/group/F1RJ55/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RJ55", "url": "https://www.uniprot.org/uniprotkb/F1RJ55" } ], "pmid": "" }, { "name": "side of membrane", "id": "GO:0098552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098552", "evidence": [ { "database": "UniProtKB", "id": "F1RJ55", "url": "https://www.uniprot.org/uniprotkb/F1RJ55" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1RJ55", "url": "https://www.uniprot.org/uniprotkb/F1RJ55" } ], "pmid": "" }, { "name": "neuron projection regeneration", "id": "GO:0031102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031102", "evidence": [ { "database": "UniProtKB", "id": "F1RJ55", "url": "https://www.uniprot.org/uniprotkb/F1RJ55" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RJ55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ55" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 62, "start_aa": "Ile", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 272 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 155, "end_pos": 157 }, { "start_pos": 192, "end_pos": 194 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 391, "end_pos": 393 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJ56-1", "uniprot_ac": "F1RJ56", "uniprot_id": "F1RJ56_PIG", "mass": { "chemical_mass": 49500.0, "monoisotopic_mass": 49500.0 }, "refseq": { "ac": "XP_003131797", "name": "protein EVI2B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131797" }, "gene_names": [ { "name": "EVI2B", "type": "recommended", "evidence": [ { "id": "F1RJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ56" } ] }, { "name": "EVI2B", "type": "synonym", "evidence": [ { "id": "XP_003131797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131797" } ] } ], "protein_names": [ { "name": "Ecotropic viral integration site 2B", "type": "synonym", "evidence": [ { "id": "F1RJ56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ56/entry#names_and_taxonomy" } ] }, { "name": "protein EVI2B", "type": "synonym", "evidence": [ { "id": "XP_003131797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131797" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJ56", "url": "https://www.uniprot.org/uniprotkb/F1RJ56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EVI2B", "url": "https://www.uniprot.org/uniprotkb/F1RJ56", "locus": { "chromosome": "12", "start_pos": 43561755, "end_pos": 43553898, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017750", "url": "https://www.ensembl.org/id/ENSSSCG00000017750" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017750", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017750", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524827", "url": "https://www.ncbi.nlm.nih.gov/gene/100524827", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR033239", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033239", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524827", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524827", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GETPDMC", "url": "https://omabrowser.org/oma/group/GETPDMC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJ56", "url": "https://www.orthodb.org/?gene=F1RJ56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15384:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15384:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131797", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RJ56", "url": "https://www.uniprot.org/uniprotkb/F1RJ56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ56-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPKYFILILFCGHLHHTFFPETEATTTEITTEVQPQSTLFRSSIPYASAHSQGPRENPLGQPTQFNNLSSGQPIPTPKVATGQSTPAAYASSGKPAAHTSVGQPLAYVTKKPTAMTNTSSQGTALPVFTSARQLSPSVPSSTSQQLPSVHTQTQQPSSMHTSRKSIPPTVHNLPTPPTPSSINSHRNTPGFILDPTMNKKTPEKTNSHSSTVAILIGAILTSMFVAIIMIVLWKCLQKPVINDQNWAGRSPFADGETPDICLGNIRENEVPTKRTSIISLMAWKPSKSTSAAGDLEIQLFESRENIRDSNNPKAEKIKDQANGTSEDSADGSTIGTAVSSSDDADLPPPPPPLLDLEGQEGDQSDKPTMATVSPLPNDSDNLPSSLDCLNEVCEDPNSEFKQSFPPPPDSVNLPLPQEDFMKNQDHSNNEIQCQEFPIPPDSHQDLNESLPPPPAELL", "length": 459, "header": "tr|F1RJ56-1|F1RJ56_PIG Isoform 1 of Ecotropic viral integration site 2B OS=Sus scrofa OX=9823 GN=EVI2B PE=4 SV=1 CANONICAL=F1RJ56-1" }, "isoforms": [ { "isoform_ac": "F1RJ56-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ56/entry", "sequence": { "sequence": "MDPKYFILILFCGHLHHTFFPETEATTTEITTEVQPQSTLFRSSIPYASAHSQGPRENPLGQPTQFNNLSSGQPIPTPKVATGQSTPAAYASSGKPAAHTSVGQPLAYVTKKPTAMTNTSSQGTALPVFTSARQLSPSVPSSTSQQLPSVHTQTQQPSSMHTSRKSIPPTVHNLPTPPTPSSINSHRNTPGFILDPTMNKKTPEKTNSHSSTVAILIGAILTSMFVAIIMIVLWKCLQKPVINDQNWAGRSPFADGETPDICLGNIRENEVPTKRTSIISLMAWKPSKSTSAAGDLEIQLFESRENIRDSNNPKAEKIKDQANGTSEDSADGSTIGTAVSSSDDADLPPPPPPLLDLEGQEGDQSDKPTMATVSPLPNDSDNLPSSLDCLNEVCEDPNSEFKQSFPPPPDSVNLPLPQEDFMKNQDHSNNEIQCQEFPIPPDSHQDLNESLPPPPAELL", "length": 459, "header": "tr|F1RJ56-1|F1RJ56_PIG Isoform 1 of Ecotropic viral integration site 2B OS=Sus scrofa OX=9823 GN=EVI2B PE=4 SV=1 CANONICAL=F1RJ56-1" }, "locus": { "chromosome": "12", "start_pos": 43561389, "end_pos": 43560013, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019319.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019319.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018806.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018806.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 179, "start_aa": "Thr", "end_pos": 179, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr179", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ56", "url": "https://www.uniprot.org/uniprotkb/F1RJ56" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524827", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524827", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZM19-1", "protein_name": "Ecotropic viral integration site 2B", "gene_name": "Evi2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJ87-1", "uniprot_ac": "F1RJ87", "uniprot_id": "F1RJ87_PIG", "mass": { "chemical_mass": 52410.0, "monoisotopic_mass": 52410.0 }, "refseq": { "ac": "NP_001230509", "name": "peptide chain release factor 1, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230509" }, "gene_names": [ { "name": "MTRF1", "type": "recommended", "evidence": [ { "id": "F1RJ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ87" } ] }, { "name": "MTRF1", "type": "synonym", "evidence": [ { "id": "NP_001230509", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230509" } ] } ], "protein_names": [ { "name": "Mitochondrial translation release factor 1", "type": "synonym", "evidence": [ { "id": "F1RJ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJ87/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial translational release factor 1", "type": "synonym", "evidence": [ { "id": "NP_001230509", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230509" } ] }, { "name": "peptide chain release factor 1, mitochondrial", "type": "synonym", "evidence": [ { "id": "NP_001230509", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230509" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJ87", "url": "https://www.uniprot.org/uniprotkb/F1RJ87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTRF1", "url": "https://www.uniprot.org/uniprotkb/F1RJ87", "locus": { "chromosome": "11", "start_pos": 25639177, "end_pos": 25603809, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009436", "url": "https://www.ensembl.org/id/ENSSSCG00000009436" } ] } } ], "crossref": [ { "id": "F1RJ87", "url": "https://alphafold.ebi.ac.uk/entry/F1RJ87", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009436", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009436", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155739", "url": "https://www.ncbi.nlm.nih.gov/gene/100155739", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155739", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155739", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECQQSRS", "url": "https://omabrowser.org/oma/group/ECQQSRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJ87", "url": "https://www.orthodb.org/?gene=F1RJ87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43804", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43804", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43804:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43804:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00472", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00472", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230509", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230509", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RJ87", "url": "https://www.uniprot.org/uniprotkb/F1RJ87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJ87-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRHLYVWLCRHPSLHRHRQCHVHLRSHRLTQTHLDTRPGAFRQDRNHLLCRLLNKSWSRRYCHQDTRMQWRHKALQKYMEDLSKEYQTLDRCLQHISAPEGDRRSLNRRHAELAPLAVIYKEIQEAEQAIEELESMCKSLNKQDEKQLQELALEEKRTIAQKINMLYHELFQSLVPKEKYDKNDVILEVTSGRTTGGDICQQFTREIFDMYQNYSSYKHWTFELLNYTPADYGGLHHAAARISGANVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKEKCQQQSARKLQVGTRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDLLIQRLLQTADEEAITEFLDENLKSAK", "length": 446, "header": "tr|F1RJ87-1|F1RJ87_PIG Isoform 1 of Mitochondrial translation release factor 1 OS=Sus scrofa OX=9823 GN=MTRF1 PE=3 SV=2 CANONICAL=F1RJ87-1" }, "isoforms": [ { "isoform_ac": "F1RJ87-1", "url": "https://www.uniprot.org/uniprotkb/F1RJ87/entry", "sequence": { "sequence": "MNRHLYVWLCRHPSLHRHRQCHVHLRSHRLTQTHLDTRPGAFRQDRNHLLCRLLNKSWSRRYCHQDTRMQWRHKALQKYMEDLSKEYQTLDRCLQHISAPEGDRRSLNRRHAELAPLAVIYKEIQEAEQAIEELESMCKSLNKQDEKQLQELALEEKRTIAQKINMLYHELFQSLVPKEKYDKNDVILEVTSGRTTGGDICQQFTREIFDMYQNYSSYKHWTFELLNYTPADYGGLHHAAARISGANVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKEKCQQQSARKLQVGTRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDLLIQRLLQTADEEAITEFLDENLKSAK", "length": 446, "header": "tr|F1RJ87-1|F1RJ87_PIG Isoform 1 of Mitochondrial translation release factor 1 OS=Sus scrofa OX=9823 GN=MTRF1 PE=3 SV=2 CANONICAL=F1RJ87-1" }, "locus": { "chromosome": "11", "start_pos": 25638098, "end_pos": 25607735, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010343.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010343.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010075.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010075.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJ87", "url": "https://www.uniprot.org/uniprotkb/F1RJ87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155739", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155739", "resource": "KEGG Pathway" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" } ], "orthologs": [ { "uniprot_canonical_ac": "A2RVR7-1", "protein_name": "Peptide chain release factor 1, mitochondrial", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRVLIRPNFLSNLIRYCSRGTHSHDRSLRSVLSSNMIRLYTTGMEPQLSPDLIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQGENLDMFIDALLLRQEMDAIASFSSTS", "length": 413 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "E1BXF8-1", "protein_name": "Mitochondrial translation release factor 1", "gene_name": "MTRF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKPPQSIWLFKNLLSSCYCYGQLHNSPLPSVAKKISYVMRLHSCGFWRPESLLDTDRFTLSFHGWLRKKHQDSRALWKHEAVQKYLETLSKEYQQVDHLLNADSKNEFEQRTLRRRRADLSPVATAFQEIREAESELQELETMCRELDSRDEKQLLELALEEKETLDKKINTLCRKLFQLLVPKEKYDKSHVILEVTAGRTTGGDICQQFTKEMFEMYQNYADYKCWTFDILNYVPAEIGGLHHAAAHISGDDVYRHLKYEGGTHRVQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHVNKTDSAVRIVHLPTGVVVECQQERSQQMNKEIALRTLRAKLYQQIIEKQLSQEQSARKLQLGTRAQSERIRTYNFTQDRVTDHRISYDARNIKEILSGKEELDKLINRLLEFAEMEALTEYLENLQSVGGEGC", "length": 455 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HGU2-1", "protein_name": "Peptide chain release factor 1, mitochondrial", "gene_name": "Mtrf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSHHLCIHLFRNPSYTRRHVFLYCQRFRQISLDTRLWDFKQNKSHVLHQVLNKSWSRSYCHQDPKMLWKHKALQKYMEGLNEEYQTLDGCLQDISGNEDSRRALCRRHAKLAPLAAIYQEIQEAEQAIEELESMCKTLHKQDEKQLQELVSEERQIIDQKINTLYSELLEQLVPKEKYDKSDVILEVTSGRTTGGDICQQFTREIFDMYQNYSYYKHWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEGGIHRVQRIPDVGLSSRMQRIHTGTMSVIVLLQPDEVDVKVDPRDLRIDTFRSRGPGGQHVNTTDSAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQILEKDKCQQQSARKLQVGTRAQSERIRTYNFTQDRVTDHRIAFEVRDIKEFLRGEKCLDQLIQRLLQSADEEAIAEFLDESLKSVK", "length": 443 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0RDC8-1", "protein_name": "Mitochondrial translation release factor 1", "gene_name": "Mtrf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFHLCVWLFRNLSSLSACSQRHVFLYGQQFRQINLDPRLWNFRQNKTHVLYRLLNKSWSRGYCQGTRKLWKHKALQKYMEGLNDEYQSLDQCLQDISEDEGDRRASHRRHAELAPLVAVYQEIQEAEQAIEELESMCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLEHLVPKEKCDRSNVILEVTSGRTTGGDICQQFTREIFDMYQNYSYYKHWRFELLNYTPADYGGLHHAAARISGDSVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPRDLRVDTFRARGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDKCQQQNARKLQEFLRGEKCLDQLIERLLQSADEEAIAEFLDESLQSVK", "length": 413 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O75570-1", "protein_name": "Peptide chain release factor 1, mitochondrial", "gene_name": "MTRF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAELLDEHLKSAK", "length": 445 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3MHI7-1", "protein_name": "Peptide chain release factor 1, mitochondrial", "gene_name": "MTRF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNRRHLFAWLFRHLSLNGHLQCHVHRHSHQLTQIPLDTRLWVFRRNRNHTVHRLLNKNCSRRYCHQDTSMLWKHKALQKYMEDLNKEYQTLDHCLHHISASEGDRRSLTRRHAELAPLAVIYKEIQEAEQAIEELESMCKSLNKQDEKQLQELALEERQTIAQKINMLYSELFQSLLPKEKYDKNDVILEVTSGRTTGGDICQQFTREIFDMYQNYSSYKHWRFELLNYTPADYGGLHHAAARISGDNVYKHLKYEGGIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDKCQQRSARKLQVGTRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDQLIQRLLQSADEEAITEFLDENLKSVK", "length": 447 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54RE7-1", "protein_name": "Peptide chain release factor 1", "gene_name": "prfA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFRSLNKLLISNNLIIKKNNIIIPYNYKFSIKNNNNNNNNFIYRNFCNNNNNKNNNNNNNNIDELFNKTSIPPNIVFRLNLMGKKSKELRNMIDSNMGLGQSEIKKISKELQETAEPLGYFGDLIEKLKELKELQTMLVEETDEDGKQMIKSDINKLKQEEIEPLEKQLLFSLLPGSKDDAGDAILEIRAGTGGSEAQLFTQDVYEMYRSYCLQKGWTFEPLELSVTEVGGYRDVTVSVSGKGVFGFLKYESGVHRVQRVPLTETQGRIHTSTITVAILPEPKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRITHLPTGITVAMQDERSQHQNRSKAMKILKARIYERERIRLQNERVSERNAQIGSALRSERIRTYNYPQDRITDHRVSINGNLNSCMNSDGLDSFIDEILVEFHTKELEELLS", "length": 430 }, "evidence": [ { "id": "F1RJ87", "url": "https://omabrowser.org/oma/group/F1RJ87/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8K126-1", "protein_name": "Peptide chain release factor 1, mitochondrial", "gene_name": "Mtrf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RJB2", "url": "https://www.uniprot.org/uniprotkb/F1RJB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJB2-1", "url": "https://www.uniprot.org/uniprotkb/F1RJB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"tr|A0A287A8J9-1|A0A287A8J9_PIG Computationally mapped isoform of Solute carrier family 35 member E2 OS=Sus scrofa OX=9823 GN=SLC35E2 PE=4 SV=1 CANONICAL=F1RJC4-1" }, "locus": { "chromosome": "6", "start_pos": 63831713, "end_pos": 63825689, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055549.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055549.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040207.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040207.2" } ] } }, { "isoform_ac": "F1RJC4-1", "url": "https://www.uniprot.org/uniprotkb/F1RJC4/entry", "sequence": { "sequence": "MSASAKPAAPAEPAPGPREKPGGQPLLAWGPVFGSRGEKVALGQSDGAAERVLTVTVTETTVLESDLGAWGARALLYLSLWFFFSFCTLFLNKHILSLLEGEPSTLGAVQMLSTTLIGCVKIVVPCCLYQHKTRLSYPPNFIVTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVILSRMVLGEHTGLLVNLSLLPVMGGLALCTATEMSFNFLGFSAALSTNVMDCLQNVFSKKLLSGDKYRFSAAELQFYTSAAAVAMLVPAWAFFMDLPVIGRSGRSFRYSQDVVLLLLADGLLFHLQSVTAYALMGRISPVTFSVASTVKHALSIWLSVIVFGNRVTSLSAVGTVLVTAGVLLYNKAKQQQHEAMQSLAMAAGRMPDNSSEPLLPVDPRPHH", "length": 404, "header": "tr|F1RJC4-1|F1RJC4_PIG Isoform 1 of Solute carrier family 35 member E2 OS=Sus scrofa OX=9823 GN=SLC35E2 PE=3 SV=3 CANONICAL=F1RJC4-1" }, "locus": { "chromosome": "6", "start_pos": 63831713, "end_pos": 63824503, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047599.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047599.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047548.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047548.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJC4", "url": "https://www.uniprot.org/uniprotkb/F1RJC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BHJ1-1", "protein_name": "Solute carrier family 35 member E2", "gene_name": "SLC35E2B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSASAKPPALGELDPGPGEKPGGRPLLAWAPVFSHRSEKIALGQSDGSPEEQVLTVTVTETTVIEADLGVWGARALTYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCCLYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVILSRTVLGEHTGLLVNLSLIPVMGGLALCTATEMSFNFLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAAELQFYTSTAAVAMLVPAWIFFMDLPVIGRSGRSFRYSQDVVLLLLADGVLFHLQSVTAYALMGRISPVTFSVASTVKHALSIWLSVIVFGNKVTSLSAVGTVLVTAGVLLYNKAKQQQREAMQSLASATTQPPDGSSELLLPQDPRPHH", "length": 405 }, "evidence": [ { "id": "F1RJC4", "url": "https://omabrowser.org/oma/group/F1RJC4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IK04-1", "protein_name": "Solute carrier family 35 member E2A isoform X1", "gene_name": "LOC100773575", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSAKSQGPEETVPDCEEELKGKTLLTWGPLFGHRSEKIVFTKGDGSPEESLLTVTITETTVIESDLGVWSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCCLYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLIPAWTFFMDVPVIGRSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSIIVFGNKITSLSAIGTILVTMGVLLYNKARQYQQETMQSLATATSRGPEDDTESLVPLDSRQHH", "length": 404 }, "evidence": [ { "id": "F1RJC4", "url": "https://omabrowser.org/oma/group/F1RJC4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P0CK96-1", "protein_name": "Solute carrier family 35 member E2B", "gene_name": "SLC35E2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSSVKTPALEELVPGSEEKPKGRSPLSWGSLFGHRSEKIVFAKSDGGTDENVLTVTITETTVIESDLGVWSSRALLYLTLWFFFSFCTLFLNKYILSLLGGEPSMLGAVQMLSTTVIGCVKTLVPCCLYQHKARLSYPPNFLMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVAMLVPARVFFTDVPVIGRSGKSFSYNQDVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSVIVFGNKITSLSAVGTALVTVGVLLYNKARQHQQEALQSLAAATGRAPDDTVEPLLPQDPRQHP", "length": 405 }, "evidence": [ { "id": "F1RJC4", "url": "https://omabrowser.org/oma/group/F1RJC4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C811-1", "protein_name": "Solute carrier family 35 member E2A", "gene_name": "Slc35e2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAAAKSQVPEEAAPGCEEEPKGKTLLTWGSLFGHRSEKIVFTKGDGSPEESLLTVTITETTVIESDLGVWSSRALIYLTLWFFFSFCTLFLNKYILSLLEGEPSMLGAVQMLSTTLIGCVKIFVPCCLYQHKTRLSYPPNFIMTMLFVGLMRFATVVLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLIPAWTFFMDIPVIGRSGKSFSYSQDIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSIIVFGNKITSLSAIGTILVTLGVLLYNKARQYQQETMQSLVTATSRNPEDDTEPLVPQDSRQHH", "length": 405 }, "evidence": [ { "id": "F1RJC4", "url": "https://omabrowser.org/oma/group/F1RJC4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LDH3-1", "protein_name": "Probable sugar phosphate/phosphate translocator At1g12500", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVEAQSWTTRRMSNPRFDAAATAAPTIVDIPGTPPHSSASSPLKPFFLSSPTVSPTILTAAIIAAWFGSNIGVLLLNKYLLFYYGFRYPIFLTMTHMLSCAAYSSAVINIAGIVPRQHILSRRQFLKILSLSAIFCLSVVCGNTSLRYIPVSFNQAIGATTPFFTAVFSFLITCKTESTEVYLALLPVVSGIVLASNSEPSFHLFGFLICVASTAGRALKSVVQGIILTSESEKLHSMNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTDPLIIFLLAGNATVAYLVNLTNFLVTKHTSALTLQVLGNGKAAVAAGVSVLIFRNPVTVMGIAGFGVTIMGVVLYSEARKRSKLLNQK", "length": 361 }, "evidence": [ { "id": "F1RJC4", "url": "https://omabrowser.org/oma/group/F1RJC4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1RJC4", "url": "https://www.uniprot.org/uniprotkb/F1RJC4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RJC4", "url": "https://www.uniprot.org/uniprotkb/F1RJC4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1RJC4", "url": "https://www.uniprot.org/uniprotkb/F1RJC4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "antiporter activity", "id": "GO:0015297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015297", "evidence": [ { "database": "UniProtKB", "id": "F1RJC4", "url": "https://www.uniprot.org/uniprotkb/F1RJC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": 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"homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 }, { "start_pos": 390, "end_pos": 392 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJE1-1", "uniprot_ac": "F1RJE1", "uniprot_id": "F1RJE1_PIG", "mass": { "chemical_mass": 25166.0, "monoisotopic_mass": 25166.0 }, "refseq": {}, "gene_names": [ { "name": "ANKRD65", "type": "recommended", "evidence": [ { "id": "F1RJE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJE1" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain 65", "type": "synonym", "evidence": [ { "id": "F1RJE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJE1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJE1", "url": "https://www.uniprot.org/uniprotkb/F1RJE1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD65", "url": "https://www.uniprot.org/uniprotkb/F1RJE1", "locus": {} } ], "crossref": [ { "id": "F1RJE1", "url": "https://alphafold.ebi.ac.uk/entry/F1RJE1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003346", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003346", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "F1RJE1", "url": "https://www.uniprot.org/uniprotkb/F1RJE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJE1-1", "url": "https://www.uniprot.org/uniprotkb/F1RJE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGTPSQRTEPLGRVPLRVTGSQGPQKLNGGWVPLGREGSMLAWGQWAGSGVWLPASMKDPCSCQTDSEVSEPGELELRWSELGSEQALGAGTEGPGSPPAWGRLLQAVWQGHVGLVTQLLRQGASLEERTWRCCWSTVQIPASRTGTAAQPSTGLPPVATCWLSSCWQPGELRTPRTHWASHLCTMLLGEATRRSQATFWTGARRSMRLAGSTRPPCISLWSGAMDPLQSFC", "length": 233, "header": "tr|F1RJE1-1|F1RJE1_PIG Isoform 1 of Ankyrin repeat domain 65 OS=Sus scrofa OX=9823 GN=ANKRD65 PE=4 SV=3 CANONICAL=F1RJE1-1" }, "isoforms": [ { "isoform_ac": "F1RJE1-1", "url": "https://www.uniprot.org/uniprotkb/F1RJE1/entry", "sequence": { "sequence": "MDGTPSQRTEPLGRVPLRVTGSQGPQKLNGGWVPLGREGSMLAWGQWAGSGVWLPASMKDPCSCQTDSEVSEPGELELRWSELGSEQALGAGTEGPGSPPAWGRLLQAVWQGHVGLVTQLLRQGASLEERTWRCCWSTVQIPASRTGTAAQPSTGLPPVATCWLSSCWQPGELRTPRTHWASHLCTMLLGEATRRSQATFWTGARRSMRLAGSTRPPCISLWSGAMDPLQSFC", "length": 233, "header": "tr|F1RJE1-1|F1RJE1_PIG Isoform 1 of Ankyrin repeat domain 65 OS=Sus scrofa OX=9823 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"MGQWAAERTQARAPRTSRPRLRPLDDSSSDSHSESSMSRRAAESPPRSAHSFSNGERNQDHRRGRSRDLEARDRWPYARTPRSRFPQRDLSLPLMERKAFAKGREHKHRDSAVGYEARSQDTVSYQDMGDLAEDRKLQNPIQDNMENYRKLLSLGVQLAEDDGHSHMTQGHSSRSRRSAYPSTSRGLKTLPETKKPAHRRGICEDESSHGVIMEKFIKDVARSSRSGRAREPSDRPQRLPRRPDGGWKEVSVSKREAVIQERACEGGALGGGGFPCNASLVSKKRVLERKRRYPFDEDGKGSVHDQRGCVRKAASVSSLSAPPLPGSPPLVLGAMPYVCDECGRSFGVISEFVEHQIMHTRESLYEYGESFIHSVAISEVQRSQAGGKRFECKECGETFNRSAALAEHRKTHARENLAEGQAEVCEEPFLPSPTFSELQKIYGKEKFYECKVCKETFLHSSALVDHQKTHGREARAGERADAFQPSPAPKELPRLYGREKLYECRVCGETFHHSAALREHQQVHARGHPPESRGRACEETFVPGQSLRRRQKTYPKEKLYDFAAAGEAFRQGSHLLEPQKIRSRRELFEGRGYDKSAVHGVSFPESQKSHTIARPPENEEDERAFTVSCSPASSREAAAGERSVLRSSAFAAAQRSHSAAGPSRPRGFAESTVHSSGVISRRQVPAGESSLERRRLESSVIHSLAALKPPRGRGGRELLGGGEKGAPSTYLAGLREQQRAPAREGPHEGGAEDISQGSGARSASQAEAQPSGEGPSGVKTAGEASVPGSGVREHQKARAKKKNIEHRNYDASVTHSLRFGQPLTFRPREKFYECPECGESFARSSDLTEHQKIHDRKKPSGGKNYIRSVIRSLASADPQTSYAGWAAQASFCKECGEYFATLEDLGAHQKIYAREKLHVGKLFGGSVVQSAGGAGPQQDELDELDEAEDSIYGCKDCGLGFADRADLRDHQKVHGREYLIDSREYTHSVVHTHSVSEYQKDYTGEQLYECPACGESFVHSSFLFEHQKVHEQDQFYGQRRYEEPFLQPLVISPRGPRAPQKSPAGTSLLCQVCGRDFIHGSVLSEHMRVHAGEDLPEQGGRAEAAGGPSAAPAAPPRDEAEEKRYACETCGESFRSQADLREHMRTHEKEEPYDYGATFVHTSFLTEPPKRDSPFYECKDCGKSFIHNTVLTKHQKLHLEEEEAAAAAAQEVEANVLVPREVLRIQGSNVEAAEPEVEAAEPEVEAAEPNVEAAEPNGEAEGPEGEAAEPNGEAEQPNAEAEQPNGDADEPDGAGIEDPEERAEEPEADADEPDGLGVEDPEEEGEDQEIQVEAPYYGCGECAETFTSSSANGEHLKSHARVMTFEPGSVCGENSHPTEHASTSGSGRADDKYFKCDVCGQVFSDRLSLARHQNTHTG", "length": 1418, "header": "tr|F1RJG3-1|F1RJG3_PIG Isoform 1 of Paternally expressed 3 OS=Sus scrofa OX=9823 GN=PEG3 PE=3 SV=4 CANONICAL=F1RJG3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVD5/entry", "sequence": { "sequence": "MGQWAAERTQARAPRTSRPRLRPLDDSSSDSHSESSMSRRAAESPPRSAHSFSNGERNQDHRRGRSRDLEARDRWPYARTPRSRFPQRDLSLPLMERKAFAKGREHKHRDSAVGYEARSQDTVSYQDMGDLAEDRKLQNPIQDNMENYRKLLSLGLKTLPETKKPAHRRGICEDESSHGVIMEKFIKDVARSSRSGRAREPSDRPQRLPRRPDGGWKEVSVSKREAVIQERACEGGALGGGGFPCNASLVSKKRVLERKRRYPFDEDGKGSVHDQRGCVRKAASVSSLSAPPLPGSPPLVLGAMPYVCDECGRSFGVISEFVEHQIMHTRESLYEYGESFIHSVAISEVQRSQAGGKRFECKECGETFNRSAALAEHRKTHARENLAEGQAEVCEEPFLPSPTFSELQKIYGKEKFYECKVCKETFLHSSALVDHQKTHGREARAGERADAFQPSPAPKELPRLYGREKLYECRVCGETFHHSAALREHQQVHARGHPPESRGRACEETFVPGQSLRRRQKTYPKEKLYDFAAAGEAFRQGSHLLEPQKIRSRRELFEGRGYDKSAVHGVSFPESQKSHTIARPPENEEDERAFTVSCSPASSREAAAGERSVLRSSAFAAAQRSHSAAGPSRPRGFAESTVHSSGVISRRQVPAGESSLERRRLESSVIHSLAALKPPRGRGGRELLGGGEKGAPSTYLAGLREQQRAPAREGPHEGGAEDISQGSGARSASQAEAQPSGEGPSGVKTAGEASVPGSGVREHQKARAKKKNIEHRNYDASVTHSLRFGQPLTFRPREKFYECPECGESFARSSDLTEHQKIHDRKKPSGGKNYIRSVIRSLASADPQTSYAGWAAQASFCKECGEYFATLEDLGAHQKIYAREKLHVGKLFGGSVVQSAGGAGPQQDELDELDEAEDSIYGCKDCGLGFADRADLRDHQKVHGREYLIDSREYTHSVVHTHSVSEYQKDYTGEQLYECPACGESFVHSSFLFEHQKVHEQDQFYGQRRYEEPFLQPLVISPRGPRAPQKSPAGTSLLCQVCGRDFIHGSVLSEHMRVHAGEDLPEQGGRAEAAGGPSAAPAAPPRDEAEEKRYACETCGESFRSQADLREHMRTHEKEEPYDYGATFVHTSFLTEPPKRDSPFYECKDCGKSFIHNTVLTKHQKLHLEEEEAAAAAAQEVEANVLVPREVLRIQGSNVEAAEPEVEAAEPEVEAAEPNVEAAEPNGEAEGPEGEAAEPNGEAEQPNAEAEQPNGDADEPDGAGIEDPEERAEEPEADADEPDGLGVEDPEEEGEDQEIQVEAPYYGCGECAETFTSSSANGEHLKSHARVMTFEPGSVCGENSHPTEHASTSGSGRADDKYFKCDVCGQVFSDRLSLARHQNTHTG", "length": 1387, "header": "tr|A0A286ZVD5-1|A0A286ZVD5_PIG Computationally mapped isoform of Paternally expressed 3 OS=Sus scrofa OX=9823 GN=PEG3 PE=3 SV=2 CANONICAL=F1RJG3-1" }, "locus": { "chromosome": "6", "start_pos": 61292885, "end_pos": 61285459, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065494.2", "url": "https://www.ensembl.org/id/ENSSSCT00000065494.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035607.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035607.2" } ] } }, { "isoform_ac": "F1RJG3-1", "url": "https://www.uniprot.org/uniprotkb/F1RJG3/entry", "sequence": { "sequence": "MGQWAAERTQARAPRTSRPRLRPLDDSSSDSHSESSMSRRAAESPPRSAHSFSNGERNQDHRRGRSRDLEARDRWPYARTPRSRFPQRDLSLPLMERKAFAKGREHKHRDSAVGYEARSQDTVSYQDMGDLAEDRKLQNPIQDNMENYRKLLSLGVQLAEDDGHSHMTQGHSSRSRRSAYPSTSRGLKTLPETKKPAHRRGICEDESSHGVIMEKFIKDVARSSRSGRAREPSDRPQRLPRRPDGGWKEVSVSKREAVIQERACEGGALGGGGFPCNASLVSKKRVLERKRRYPFDEDGKGSVHDQRGCVRKAASVSSLSAPPLPGSPPLVLGAMPYVCDECGRSFGVISEFVEHQIMHTRESLYEYGESFIHSVAISEVQRSQAGGKRFECKECGETFNRSAALAEHRKTHARENLAEGQAEVCEEPFLPSPTFSELQKIYGKEKFYECKVCKETFLHSSALVDHQKTHGREARAGERADAFQPSPAPKELPRLYGREKLYECRVCGETFHHSAALREHQQVHARGHPPESRGRACEETFVPGQSLRRRQKTYPKEKLYDFAAAGEAFRQGSHLLEPQKIRSRRELFEGRGYDKSAVHGVSFPESQKSHTIARPPENEEDERAFTVSCSPASSREAAAGERSVLRSSAFAAAQRSHSAAGPSRPRGFAESTVHSSGVISRRQVPAGESSLERRRLESSVIHSLAALKPPRGRGGRELLGGGEKGAPSTYLAGLREQQRAPAREGPHEGGAEDISQGSGARSASQAEAQPSGEGPSGVKTAGEASVPGSGVREHQKARAKKKNIEHRNYDASVTHSLRFGQPLTFRPREKFYECPECGESFARSSDLTEHQKIHDRKKPSGGKNYIRSVIRSLASADPQTSYAGWAAQASFCKECGEYFATLEDLGAHQKIYAREKLHVGKLFGGSVVQSAGGAGPQQDELDELDEAEDSIYGCKDCGLGFADRADLRDHQKVHGREYLIDSREYTHSVVHTHSVSEYQKDYTGEQLYECPACGESFVHSSFLFEHQKVHEQDQFYGQRRYEEPFLQPLVISPRGPRAPQKSPAGTSLLCQVCGRDFIHGSVLSEHMRVHAGEDLPEQGGRAEAAGGPSAAPAAPPRDEAEEKRYACETCGESFRSQADLREHMRTHEKEEPYDYGATFVHTSFLTEPPKRDSPFYECKDCGKSFIHNTVLTKHQKLHLEEEEAAAAAAQEVEANVLVPREVLRIQGSNVEAAEPEVEAAEPEVEAAEPNVEAAEPNGEAEGPEGEAAEPNGEAEQPNAEAEQPNGDADEPDGAGIEDPEERAEEPEADADEPDGLGVEDPEEEGEDQEIQVEAPYYGCGECAETFTSSSANGEHLKSHARVMTFEPGSVCGENSHPTEHASTSGSGRADDKYFKCDVCGQVFSDRLSLARHQNTHTG", "length": 1418, "header": "tr|F1RJG3-1|F1RJG3_PIG Isoform 1 of Paternally expressed 3 OS=Sus scrofa OX=9823 GN=PEG3 PE=3 SV=4 CANONICAL=F1RJG3-1" }, "locus": { "chromosome": "6", "start_pos": 61292885, "end_pos": 61285459, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003692.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003692.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003607.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003607.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "F1RJG3", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RJG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJG3" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 337, "end_pos": 364, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 277, "end_pos": 279 }, { "start_pos": 400, "end_pos": 402 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJG7-1", "uniprot_ac": "F1RJG7", "uniprot_id": "F1RJG7_PIG", "mass": { "chemical_mass": 60036.0, "monoisotopic_mass": 60036.0 }, "refseq": { "ac": "XP_020950760", "name": "zinc finger protein 582 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950760" }, "gene_names": [ { "name": "ZNF582", "type": "recommended", "evidence": [ { "id": "F1RJG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ] }, { "name": "ZNF582", "type": "synonym", "evidence": [ { "id": "XP_020950760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950760" } ] } ], "protein_names": [ { "name": "Zinc finger protein 582", "type": "synonym", "evidence": [ { "id": "F1RJG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJG7/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 582 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020950760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950760" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF582", "url": "https://www.uniprot.org/uniprotkb/F1RJG7", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000003322", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003322", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521903", "url": "https://www.ncbi.nlm.nih.gov/gene/100521903", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521903", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521903", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFLINHQ", "url": "https://omabrowser.org/oma/group/EFLINHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJG7", "url": "https://www.orthodb.org/?gene=F1RJG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020950760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJG7-1", "url": "https://www.uniprot.org/uniprotkb/F1RJG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLGSALFRDVAVVFTREEWEQLAPAQRDLYRDVMLETYGNLVSLGLAVSKPEVIAFLEQGREPWMVEEVVTGSLCPVLESRYDTKVLSPKQHSYEVQSPRWEIMESLTSYGLECSSFQGNWECRSQLDRQEGNPDGHLSQMIINNEEMSTFNQQASLTFYQKIHPREKPYGYNECRKDFWQEDFLINHQGIHINEKPYKCKECGKAFKYGSRLIQHENIHSGKKPYECKECGKAFNSGSNFIQHQRVHTGEKPYECKDCAKAFSRSSQLIEHQRIHTGEKPYQCKECGKAFNRISHLKVHYRIHTGEKPYACKDCGKTFSHRSQLIQHQTIHTGKKLYECKECGKAFNQGSTLIRHQRIHTGEKPYECKACGKAFRVSSQLKQHQRIHTGEKPYQCKVCGRAFKRVSHLTVHYRIHTGEKPYECKECGKAFSHCSQLIQHQVIHAEEKPYEYKECGRTLNHDSPTIQHQRMRNRETQVNLINVEKPSINTYPLLVIREFMLASNHMNGNNRKSPLA", "length": 517, "header": "tr|F1RJG7-1|F1RJG7_PIG Isoform 1 of Zinc finger protein 582 OS=Sus scrofa OX=9823 GN=ZNF582 PE=3 SV=3 CANONICAL=F1RJG7-1" }, "isoforms": [ { "isoform_ac": "F1RJG7-1", "url": "https://www.uniprot.org/uniprotkb/F1RJG7/entry", "sequence": { "sequence": "MSLGSALFRDVAVVFTREEWEQLAPAQRDLYRDVMLETYGNLVSLGLAVSKPEVIAFLEQGREPWMVEEVVTGSLCPVLESRYDTKVLSPKQHSYEVQSPRWEIMESLTSYGLECSSFQGNWECRSQLDRQEGNPDGHLSQMIINNEEMSTFNQQASLTFYQKIHPREKPYGYNECRKDFWQEDFLINHQGIHINEKPYKCKECGKAFKYGSRLIQHENIHSGKKPYECKECGKAFNSGSNFIQHQRVHTGEKPYECKDCAKAFSRSSQLIEHQRIHTGEKPYQCKECGKAFNRISHLKVHYRIHTGEKPYACKDCGKTFSHRSQLIQHQTIHTGKKLYECKECGKAFNQGSTLIRHQRIHTGEKPYECKACGKAFRVSSQLKQHQRIHTGEKPYQCKVCGRAFKRVSHLTVHYRIHTGEKPYECKECGKAFSHCSQLIQHQVIHAEEKPYEYKECGRTLNHDSPTIQHQRMRNRETQVNLINVEKPSINTYPLLVIREFMLASNHMNGNNRKSPLA", "length": 517, "header": "tr|F1RJG7-1|F1RJG7_PIG Isoform 1 of Zinc finger protein 582 OS=Sus scrofa OX=9823 GN=ZNF582 PE=3 SV=3 CANONICAL=F1RJG7-1" }, "locus": { "chromosome": "6", "start_pos": 60735658, "end_pos": 60723529, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003688.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003688.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003603.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003603.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521903", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521903", "resource": "KEGG Pathway" }, { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1B0GSS6-1", "protein_name": "Zinc finger protein 582", "gene_name": "Zfp582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLGSELFRDVTITFSQEEWECLEPVQRDLYRDVMLENYTHLVSLGLAISKPEVIAILEQGKEPWIEERATTGGLCSALESGCGTKITSSKQHTYEEDSPQITESLPSCSLESSSLRDDWEGKGLYDRQPRNPARNAGPVLIHHKEMPALNQHHMSLTFYQKKSCRYKKCKRAFCQKQFTINQGIHTNEKPYKCRECGKAFKYGSRLIQHENIHSGKKPYECKECGKAFNSGSNFTQHQRVHTGEKPYACKDCAKAFSRSSQLIEHQRIHTGEKPYQCKECGKAFNRISHLKVHHRIHTGEKPYVCKECGKTFGHRSQLIQHQTVHTGKKLFECKECGKAFNQGSTLIRHQRIHTGEKPYKCKACGKTFRVNSQLKQHSRIHTGEKPYQCKVCSRAFKRVSHLTVHYRIHTSEKPFECKEREKAFSHCSQLIQHQVIHSEEKAYKQKGRWRSVKHDATSEHPRLRSRGTHRNIVNAEKPALGTRNHQGVCWQAAL", "length": 495 }, "evidence": [ { "id": "F1RJG7", "url": "https://omabrowser.org/oma/group/F1RJG7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MFQ5-1", "protein_name": "Zinc finger protein 582", "gene_name": "ZNF582", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLGSDLFRDVAVVFSQEEWEQLAPTQRDLYRDVMLETYSNLVSLGLAISKPDVISFLEQGKEPWTVEEVVTEGLCPVLKSRYDTKVFSPKQQSYEVQSPPWEIMESLTTYGLECSSFQDDWECRSHADREEGNPDGHLSQMMIENEEIPTFDQPAPLTFYQKIHTGEKPYGYNQCTKDFWQEDFLINHQGIQTNEKPYKCKECGKAFKYGSRLIQHENIHSGKKPYECKECGKAFNSGSNFIQHQQVHTGEKPYECKDCAKAFSRSSQLIEHQRIHTGEKPYQCKECSKAFNRISHLKVHYRIHTGEKPYACKECGKTFSHRSQLIQHQTVHTGKKLYECKECGKAFNQGSTLTRHQRIHTGEKPYECKACGKAFRVSSQLKQHQRIHTGEKPYQCKVCGRAFKRVSHLTVHYRIHTGEKPYECRECGKAFSHCSQLIQHQVIHTEEKPYEYKKHGRTLSHDPAAVQHQRMHNVETQVNLINVEKPSISTYPLLIIREFMLASNHMNGSNGKSPLA", "length": 517 }, "evidence": [ { "id": "F1RJG7", "url": "https://omabrowser.org/oma/group/F1RJG7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96NG8-1", "protein_name": "Zinc finger protein 582", "gene_name": "ZNF582", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLGSELFRDVAIVFSQEEWQWLAPAQRDLYRDVMLETYSNLVSLGLAVSKPDVISFLEQGKEPWMVERVVSGGLCPVLESRYDTKELFPKQHVYEVESPQWEIMESLTSYGLECSSFQDDWECRNQFDRQQGNPDRHFHQMIIRHEEMPTFDQHASLTFYQKIHTREKPFGYNKCRKDFWQKELLINHQGIYTNEKPYKCKECGKAFKYGSRLIQHENIHSGKKPYECKECGKAFNSGSNFIQHQRVHTGEKPYECKDCEKAFSRSSQLIEHQRTHTGEKPYQCKECGKAFNRISHLKVHYRIHTGEKPYACKECGKTFSHRSQLIQHQTVHTGRKLYECKECGKAFNQGSTLIRHQRIHTGEKPYECKVCGKAFRVSSQLKQHQRIHTGEKPYQCKVCGRAFKRVSHLTVHYRIHTGEKPYECKECGKAFSHCSQLIHHQVIHTEKKPYEYKECEKTLSHDSTTVQPQRMHNRETHVNIINVEKPSISSYPLLIIREFMLASNHMNGSNGESPLA", "length": 517 }, "evidence": [ { "id": "F1RJG7", "url": "https://omabrowser.org/oma/group/F1RJG7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RJG7", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RJG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 198, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RJG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJG7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 77, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": 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Activates OPA1, by exchanging bound GDP for free GTP, and drives OPA1 and MFN1-dependent mitochondrial fusion. Plays an essential role in mitochondrial ribosome biogenesis. As a component of a functional protein-RNA module, consisting of RCC1L, NGRN, RPUSD3, RPUSD4, TRUB2, FASTKD2 and 16S mitochondrial ribosomal RNA (16S mt-rRNA), controls 16S mt-rRNA abundance and is required for intra-mitochondrial translation of core subunits of the oxidative phosphorylation system.", "evidence": [ { "database": "UniProtKB", "id": "F1RJL0", "url": "https://www.uniprot.org/uniprotkb/F1RJL0#function" }, { "database": "UniProtKB", "id": "ARBA00059435", "url": "https://www.uniprot.org/uniprotkb/ARBA00059435#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJL0", "url": "https://www.uniprot.org/uniprotkb/F1RJL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RCC1L", "url": "https://www.uniprot.org/uniprotkb/F1RJL0", "locus": { "chromosome": "3", "start_pos": 11948715, "end_pos": 11915600, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007723", "url": "https://www.ensembl.org/id/ENSSSCG00000007723" } ] } } ], "crossref": [ { "id": "F1RJL0", "url": "https://alphafold.ebi.ac.uk/entry/F1RJL0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007723", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007723", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058923", "url": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10648:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10648:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1RJS7", "url": "https://www.uniprot.org/uniprotkb/F1RJS7", "database": 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Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJS7", "url": "https://www.uniprot.org/uniprotkb/F1RJS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RJS7", "url": "https://www.uniprot.org/uniprotkb/F1RJS7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": 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"https://bgee.org/?page=gene&gene_id=ENSSSCG00000009659", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157132", "url": "https://www.ncbi.nlm.nih.gov/gene/100157132", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157132", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157132", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPWENEA", "url": "https://omabrowser.org/oma/group/GPWENEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RJT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARALLEDWCRIMSADDQKSLMVMGIPVDCDEAEIQEVLQETLKSLGRYRLLGKIFRKQENANAVLLEFLEDTDVSMIPNEIQGKGGIWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGMFRALGHEGLSPAAVPCVSPELLAHLLGQAIAHAPQPLLPMRYRKLRVFSGSAVPAPEEEPFEIWLEQATEIVKEWPVAEAEKKRWLMESLRGPALDLMHIVQADNPSISVEECLEAFKQVFGSLESRRTSQVKYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRNIADQVRLEQVMAGASLSEILWCRLRELKDQGPPPSFLELMKVIREEEEEEAAFENENIEEPDEGDGYGHWDLEADE", "length": 364, "header": "tr|F1RJT4-1|F1RJT4_PIG Isoform 1 of PNMA family member 2 OS=Sus scrofa OX=9823 GN=PNMA2 PE=3 SV=1 CANONICAL=F1RJT4-1" }, "isoforms": [ { "isoform_ac": "F1RJT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RJT4/entry", "sequence": { "sequence": "MARALLEDWCRIMSADDQKSLMVMGIPVDCDEAEIQEVLQETLKSLGRYRLLGKIFRKQENANAVLLEFLEDTDVSMIPNEIQGKGGIWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGMFRALGHEGLSPAAVPCVSPELLAHLLGQAIAHAPQPLLPMRYRKLRVFSGSAVPAPEEEPFEIWLEQATEIVKEWPVAEAEKKRWLMESLRGPALDLMHIVQADNPSISVEECLEAFKQVFGSLESRRTSQVKYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRNIADQVRLEQVMAGASLSEILWCRLRELKDQGPPPSFLELMKVIREEEEEEAAFENENIEEPDEGDGYGHWDLEADE", "length": 364, "header": "tr|F1RJT4-1|F1RJT4_PIG Isoform 1 of PNMA family member 2 OS=Sus scrofa OX=9823 GN=PNMA2 PE=3 SV=1 CANONICAL=F1RJT4-1" }, "locus": { "chromosome": "14", "start_pos": 10424575, "end_pos": 10423484, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010591.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010591.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010315.1", "url": "https://www.ensembl.org/id/ENSSSCP00000010315.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJT4", "url": "https://www.uniprot.org/uniprotkb/F1RJT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157132", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157132", "resource": "KEGG Pathway" } ], "orthologs": 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"MAVALLEEWCKIMGVDVQKSLLVIGIPVNCGELEVQTVLQEALKCVGSYRLLGKILQKQDNTSAVLLELMEDTDMSVVPSEVQGKGGVWKVIFKTPNQDTEFLQRLNLFLEKEGQTVAGMFRALKHEGVSPATTPCTSPELLAHLVGQAMVHAQRPLLPVRYCKLRVFSGSTVAAPEEEPFEVWLEQATEIAKEWPIPETEKKRWVTESLRGPALDLMHIVQADNPSISAEECLEAFKQVFGSMESRRTSQVKYLKTYQQEGEKISAYVLRLETLLRRAVEKRAIPRNIADQVRLEQVMAGANLSNVLWCRLRELKDQGPLPTFLQLMKVVREEEEEEAYFEHESREEPGEREGSGRWDNSRNN", "length": 364 }, "evidence": [ { "id": "F1RJT4", "url": "https://omabrowser.org/oma/group/F1RJT4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MJ41-1", "protein_name": "PNMA family member 2", "gene_name": "PNMA2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALALLEDWCRILSVDDQKSLMVMGIPVDCSEDEIQEVLQETLKPLGRYKLLGKIFRKQENANAVLLELLEDPEVSVIPSKVQGKGGIWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGMFRALGHQGLSPAAMPCISPELLAHVLGQVIAHPPQPLLPMRYRKLRVFSGSAVPAPEEEPFEVWLEQATEIVKEWPVAEAEKKRWLMESLRGPALDLMHIVQADNPSISVEECLEAFKQVFGNLESRRTSQVKYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRNIADQIRLEQVMAGASLSEVLWCRLRELKDQGRPPSFLQLMKVIREEEEEEATFENENTEEPEGGDGYGHWGNEAND", "length": 364 }, "evidence": [ { "id": "F1RJT4", "url": "https://omabrowser.org/oma/group/F1RJT4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9UL42-1", "protein_name": "Paraneoplastic antigen Ma2", "gene_name": "PNMA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJU8-1", "uniprot_ac": "F1RJU8", "uniprot_id": "F1RJU8_PIG", "mass": { "chemical_mass": 60666.0, "monoisotopic_mass": 60666.0 }, "refseq": { "ac": "XP_003123975", "name": "ankyrin repeat domain-containing protein SOWAHA", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123975" }, "gene_names": [ { "name": "SOWAHA", "type": "recommended", "evidence": [ { "id": "F1RJU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJU8" } ] }, { "name": "SOWAHA", "type": "synonym", "evidence": [ { "id": "XP_003123975", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123975" } ] } ], "protein_names": [ { "name": "Sosondowah ankyrin repeat domain family member A", "type": "synonym", "evidence": [ { "id": "F1RJU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJU8/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein SOWAHA", "type": "synonym", "evidence": [ { "id": "XP_003123975", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123975" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJU8", "url": "https://www.uniprot.org/uniprotkb/F1RJU8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SOWAHA", "url": "https://www.uniprot.org/uniprotkb/F1RJU8", "locus": { "chromosome": "2", "start_pos": 135142884, "end_pos": 135139272, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014286", "url": "https://www.ensembl.org/id/ENSSSCG00000014286" } ] } } ], "crossref": [ { "id": "F1RJU8", "url": "https://alphafold.ebi.ac.uk/entry/F1RJU8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524137", "url": "https://www.ncbi.nlm.nih.gov/gene/100524137", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524137", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524137", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PPKPCML", "url": "https://omabrowser.org/oma/group/PPKPCML/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RJU8", "url": "https://www.orthodb.org/?gene=F1RJU8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14491:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14491:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25877", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25877", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123975", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123975", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RJU8", "url": "https://www.uniprot.org/uniprotkb/F1RJU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJU8-1", "url": "https://www.uniprot.org/uniprotkb/F1RJU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALAAAAAAAAAGVSQAAVLGFLQEHGGKVRNSELLSRFKPLLDAGDPRGRAARRDRFKQFVNDVAVVKEFDGVKFVVLRKKLRPREGPEPLTTCWNSTPGTLAPPSKITSVSQVEAAASGTPSLASEQKAVEPPRDPAPPSESQDTLGAPASEPTLPTRELLLSPALQSGGPSDPQIPTFELSQPSEGLSADVAPPSRAPSEATLTHAEPPDLEPGPRQSKGPPPPPSPPPPPPRAPLQKPCMLPVRCVPGPFRIRTEDQGLRRQLSEEPSPRSSPLLLRRLSVEEPGLGLSLGPGRSPHLRRLSRAGQRLLSPDTEEVPAAPPPSAVPLEPAEHEWLVRAAGGRWTHQLHGLLLRDLGLAAKRDFMSGFTALHWAAKSGDLEMVQQLVEVARRGGARVDVNARSHGGYTPLHLAALHGHEDAAVLLVVRLGAQVQVRDHSGRRAYQYLPPGASYALRHLLGDPGLRGSTETDRAGGGSGNLAARRPVQVAATILSSTTSAFLGVLADDLMLQDLARGMRKSGSFSKFLGASPMAPRKKTKTRNSLQAFSEISRRPTPGPLAGLVPSLPTAT", "length": 573, "header": "tr|F1RJU8-1|F1RJU8_PIG Isoform 1 of Sosondowah ankyrin repeat domain family member A OS=Sus scrofa OX=9823 GN=SOWAHA PE=3 SV=2 CANONICAL=F1RJU8-1" }, "isoforms": [ { "isoform_ac": "F1RJU8-1", "url": "https://www.uniprot.org/uniprotkb/F1RJU8/entry", "sequence": { "sequence": "MALAAAAAAAAAGVSQAAVLGFLQEHGGKVRNSELLSRFKPLLDAGDPRGRAARRDRFKQFVNDVAVVKEFDGVKFVVLRKKLRPREGPEPLTTCWNSTPGTLAPPSKITSVSQVEAAASGTPSLASEQKAVEPPRDPAPPSESQDTLGAPASEPTLPTRELLLSPALQSGGPSDPQIPTFELSQPSEGLSADVAPPSRAPSEATLTHAEPPDLEPGPRQSKGPPPPPSPPPPPPRAPLQKPCMLPVRCVPGPFRIRTEDQGLRRQLSEEPSPRSSPLLLRRLSVEEPGLGLSLGPGRSPHLRRLSRAGQRLLSPDTEEVPAAPPPSAVPLEPAEHEWLVRAAGGRWTHQLHGLLLRDLGLAAKRDFMSGFTALHWAAKSGDLEMVQQLVEVARRGGARVDVNARSHGGYTPLHLAALHGHEDAAVLLVVRLGAQVQVRDHSGRRAYQYLPPGASYALRHLLGDPGLRGSTETDRAGGGSGNLAARRPVQVAATILSSTTSAFLGVLADDLMLQDLARGMRKSGSFSKFLGASPMAPRKKTKTRNSLQAFSEISRRPTPGPLAGLVPSLPTAT", "length": 573, "header": "tr|F1RJU8-1|F1RJU8_PIG Isoform 1 of Sosondowah ankyrin repeat domain family member A OS=Sus scrofa OX=9823 GN=SOWAHA PE=3 SV=2 CANONICAL=F1RJU8-1" }, "locus": { "chromosome": "2", "start_pos": 135141406, "end_pos": 135139688, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015609.2", "url": "https://www.ensembl.org/id/ENSSSCT00000015609.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015197.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015197.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 122, "start_aa": "Thr", "end_pos": 122, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr122", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTSFLKRGDCNSGDESSEKWRAKQTDEVQTLETYRIKMGEKRKRQQKLQNVPQIPCIRVPPSASGTSLLKDLTQGQQRYFYSIMRIYSPRPQWEALQTRYIHRLLQEQLLGYITQQEALAYAAVLRDSTKRASAKAAPQRTIPQRASGMTRTRPTALPVSAVAVGPRAQSTGLRSLKTKTLHNL", "length": 185, "header": "tr|F1RJX2-1|F1RJX2_PIG Isoform 1 of Family with sequence similarity 216 member B OS=Sus scrofa OX=9823 GN=FAM216B PE=3 SV=2 CANONICAL=F1RJX2-1" }, "isoforms": [ { "isoform_ac": "A0A287BMM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMM3/entry", "sequence": { "sequence": "MNTSFLKRGDCNSGYRIKMGEKRKRQQKLQNVPQIPCIRVPPSASGTSLLKDLTQGQQRYFYSIMRIYSPRPQWEALQTRYIHRLLQEQLLGYITQQEALAYAAVLRDSTKRASAKAAPQRTIPQRASGMTRTRPTALPVSAVAVGPRAQSTGLRSLKTKTLHNL", "length": 165, "header": "tr|A0A287BMM3-1|A0A287BMM3_PIG Computationally mapped isoform of Family with sequence similarity 216 member B OS=Sus scrofa OX=9823 GN=FAM216B PE=3 SV=1 CANONICAL=F1RJX2-1" }, "locus": { "chromosome": "11", "start_pos": 24321867, 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}, "locus": { "chromosome": "11", "start_pos": 23197807, "end_pos": 23169695, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010331.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010331.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010063.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010063.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJX6", "url": "https://www.uniprot.org/uniprotkb/F1RJX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152642", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152642", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZP78-1", "protein_name": "Coiled-coil domain containing 122", "gene_name": "Ccdc122", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDIERKNEVIPTKAVVKEDTSSLTDVVEQVAKQQLSQTSEIEKHKKVLFQLQMELHDLEKQIATTAEEAKETDRQMHQQDAAMENSKLQCGLLEAQIESLYSESLKLKFDTETAQEKFEEQMKKYNSYYVKIKAFKDNLGEIKSQCSFMTELCEKRDLIKNLKTMKEDLMENLQNSQGNCTLRIQEDISELKNKLMTVKESIIEKTSFLEEEKKTHEKLRKEIEVQHKRYDAILKRLRCQVHRTQLNRRKWQWSIQHLEKTAAELKTRIREKESSGTRNRPAALWERIL", "length": 291 }, "evidence": [ { "id": "F1RJX6", "url": "https://omabrowser.org/oma/group/F1RJX6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1ML57-1", "protein_name": "Coiled-coil domain containing 122", "gene_name": "CCDC122", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSENERKSQGVPKEALAKQDTSSLTDAVEQVAKQQQSQTSEIERNRKVLFHLQNELHELETQIASVSAETKETERQIYQQDAAIQNTRLQCGDLENQIKSLHVENVKLKSDIETAQENFEEQMIKYNEYYAKIKAHKDSLREVENKWSFMTELNEKRDLVKKLKTMKEELKLDLQNPEGNLMRQAQEDITKLKDEITSVEESISEQTCFLEEEIKTHEKLRKEIEVQHKRYGAILKRLHCQVNKLHSNRRQWQWNIQQLEKTAAELRKRIGMKD", "length": 274 }, "evidence": [ { "id": "F1RJX6", "url": "https://omabrowser.org/oma/group/F1RJX6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NXE0-1", "protein_name": "Coiled-coil domain containing 122", "gene_name": "CCDC122", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKENYPSLTEVVKQVAEQQHLQSAEIEKNKIILFQLQVRYQELEKEMDSIMLEMKTAEREIYLQDDAIQVTKYHCESLEAEVGALYAENMKLRFDTETIQEEYEMTSARNSKYREKIKAHKSLFWEMESKMPIVIELAKKKAIVTELRAKKEELMSDLQNPEGSAIKQVQEEIALIKQEITSVKDFINKKTDLLEEIKKAHAKLRKEIEVQNKRYDAILKRLHCQLNKLHSNKRQWHWNIQQMEKKAEELRKCLGEVELQINI", "length": 264 }, "evidence": [ { "id": "F1RJX6", "url": "https://omabrowser.org/oma/group/F1RJX6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H847-1", "protein_name": "Coiled-coil domain-containing protein 122 isoform X1", "gene_name": "Ccdc122", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSEDKARKDEGIPKKAMSKEDTSSLTDAVEQVAKRQQSQTSEIEKHKKVLFQLQIELHDLEKQIVATAAEAKETERQMHQQDVAMENSKLQCGLLEAQIKSLYSESVKLKFDIETAQEKFEEQMIKYNAYYAKIKAYKDSLGEIESKCSLMTELYEKRDLIKNLKTMKEDLMESIQNPQGKYAAQIQEDISELMNKTMTVKDSIAEKTYFIEEEKKKHEKLRKEIEVQHKRYDAILKRLHCQMSKIQLNRRKWQWNIQQLEKTAADLKKRLGVKEAHELQNRPAALWERIP", "length": 291 }, "evidence": [ { "id": "F1RJX6", "url": "https://omabrowser.org/oma/group/F1RJX6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5T0U0-1", "protein_name": "Coiled-coil domain-containing protein 122", "gene_name": "CCDC122", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSDNKERKSQGFPKEDNQDTSSLADAVEKVAKQQQSQASEIEKNKKVLFNLKNELHELEKEIAAISAETKETERQIYQQDSAIENTKLHCDSLETQIKSLHSENVKLKFDIETAQEDFEEHMIKYNAYYAKIKAHKNSLGEVESKWSFMTELHEKRDFVKKLKTMKEELMQDLQNPGGNRITQVQEDITNLKDKIITVKESIIEKTCFLEEEKKTHEKLRKEIEVQHKRYDAILKRLHCQVNKLQSNRRQWQWNIQQLEKTAAELRKCIGMQE", "length": 273 }, "evidence": [ { "id": "F1RJX6", "url": "https://omabrowser.org/oma/group/F1RJX6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BVN0-1", "protein_name": "Coiled-coil domain-containing protein 122", "gene_name": "Ccdc122", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGDTERKNEVIPTKAAVKDTSALTDAVEQVAKQQQSQTSEIEKHKKILFQLQIELHELEKQIATIAEEAKETDRQMHRQDAAMENSKLQCGRLEAQIESLYSESLKLKFDTETAQEKFEEQMIKYNAYYVKIKAYKDNLGEIKSQCPFMTELYEKRDLIKNLKTMKEDLMENLQDSQGNCTIQIQEDISEIKNKIMTVKESITEKTSFVEEEKKTHEKLRKEIEVQHKRYDAILKRLHCQMNKIQLNRRKWQWNIQQLEKTAAELKKRIREKEASEIQSRPAAPWERIL", "length": 290 }, "evidence": [ { "id": "F1RJX6", "url": "https://omabrowser.org/oma/group/F1RJX6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RJX6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 273, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RJX6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RJX6" } ], "lectin_list": 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RJY2-1", "uniprot_ac": "F1RJY2", "uniprot_id": "F1RJY2_PIG", "mass": { "chemical_mass": 14634.0, "monoisotopic_mass": 14634.0 }, "refseq": { "ac": "XP_020945232", "name": "helix-loop-helix protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945232" }, "gene_names": [ { "name": "NHLH1", "type": "recommended", "evidence": [ { "id": "F1RJY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJY2" } ] }, { "name": "NHLH1", "type": "synonym", "evidence": [ { "id": "XP_020945232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945232" } ] } ], "protein_names": [ { "name": "Nescient helix-loop-helix 1", "type": "synonym", "evidence": [ { "id": "F1RJY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJY2/entry#names_and_taxonomy" } ] }, { "name": "helix-loop-helix protein 1", "type": "synonym", "evidence": [ { "id": "XP_020945232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945232" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RJY2", "url": "https://www.uniprot.org/uniprotkb/F1RJY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NHLH1", "url": "https://www.uniprot.org/uniprotkb/F1RJY2", "locus": { "chromosome": "4", "start_pos": 90109057, "end_pos": 90109458, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006384", "url": "https://www.ensembl.org/id/ENSSSCG00000006384" } ] } } ], "crossref": [ { "id": "F1RJY2", "url": "https://alphafold.ebi.ac.uk/entry/F1RJY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006384", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006384", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19701", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19701", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512227", "url": "https://www.ncbi.nlm.nih.gov/gene/100512227", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512227", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512227", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGQSRGP", "url": "https://omabrowser.org/oma/group/CGQSRGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13864", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13864", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13864:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13864:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020945232", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RJY2", "url": "https://www.uniprot.org/uniprotkb/F1RJY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJY2-1", "url": "https://www.uniprot.org/uniprotkb/F1RJY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLNSDTMELDLPPTHSETESGFSDCGGGAGPDGAGPGGPGGGQARGLEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 133, "header": "tr|F1RJY2-1|F1RJY2_PIG Isoform 1 of Nescient helix-loop-helix 1 OS=Sus scrofa OX=9823 GN=NHLH1 PE=4 SV=1 CANONICAL=F1RJY2-1" }, "isoforms": [ { "isoform_ac": "F1RJY2-1", "url": "https://www.uniprot.org/uniprotkb/F1RJY2/entry", "sequence": { "sequence": "MMLNSDTMELDLPPTHSETESGFSDCGGGAGPDGAGPGGPGGGQARGLEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 133, "header": "tr|F1RJY2-1|F1RJY2_PIG Isoform 1 of Nescient helix-loop-helix 1 OS=Sus scrofa OX=9823 GN=NHLH1 PE=4 SV=1 CANONICAL=F1RJY2-1" }, "locus": { "chromosome": "4", "start_pos": 90109458, "end_pos": 90109060, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006997.2", "url": "https://www.ensembl.org/id/ENSSSCT00000006997.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000006807.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., 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"crossref": [ { "id": "ENSSSCG00000009388", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009388", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152625", "url": "https://www.ncbi.nlm.nih.gov/gene/100152625", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152625", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152625", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SYIMDFL", "url": "https://omabrowser.org/oma/group/SYIMDFL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921241", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921241", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RK26", "url": "https://www.uniprot.org/uniprotkb/F1RK26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK26-1", "url": "https://www.uniprot.org/uniprotkb/F1RK26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTQELVTLNVGGKIFTTRSSTIKQFPASRLTRMLDGRDQEFKMVGGQIFVDRDGVLFSFILDFLRTHQLLLPTDFSDYLRLQREVLFYELDPLVDLLNQEHLLQPKPALVEVHFLSRNTQAFFRVFSSCGKTIEMLTGRITVFVEQTLVAPTWSSNSFPPQMTLLPLPPQRPSYHDLVFHCGSDSSTDNQSGIRYVSIKPDNRKLANGTNVLGLLIDTLLMEDFHLVSTRTASSEDKTECYSFERIKRSEALTMNKTLKPGTILMPQQSEKKK", "length": 274, "header": "tr|F1RK26-1|F1RK26_PIG Isoform 1 of Potassium channel regulatory protein OS=Sus scrofa OX=9823 GN=KCNRG PE=4 SV=3 CANONICAL=F1RK26-1" }, "isoforms": [ { "isoform_ac": "F1RK26-1", "url": "https://www.uniprot.org/uniprotkb/F1RK26/entry", "sequence": { "sequence": "MSTQELVTLNVGGKIFTTRSSTIKQFPASRLTRMLDGRDQEFKMVGGQIFVDRDGVLFSFILDFLRTHQLLLPTDFSDYLRLQREVLFYELDPLVDLLNQEHLLQPKPALVEVHFLSRNTQAFFRVFSSCGKTIEMLTGRITVFVEQTLVAPTWSSNSFPPQMTLLPLPPQRPSYHDLVFHCGSDSSTDNQSGIRYVSIKPDNRKLANGTNVLGLLIDTLLMEDFHLVSTRTASSEDKTECYSFERIKRSEALTMNKTLKPGTILMPQQSEKKK", "length": 274, "header": "tr|F1RK26-1|F1RK26_PIG Isoform 1 of Potassium channel regulatory protein OS=Sus scrofa OX=9823 GN=KCNRG PE=4 SV=3 CANONICAL=F1RK26-1" }, "locus": { "chromosome": "11", "start_pos": 17793804, "end_pos": 17788583, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010287.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010287.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010019.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010019.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 153, "start_aa": "Thr", "end_pos": 153, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], 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"id": "ssc:100152625", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152625", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2TUM3-1", "protein_name": "Potassium channel regulatory protein", "gene_name": "Kcnrg", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQDLVTLNVGGRIFTTRPSTLKQFPASRLAGMLDGRDQEFKTVDGQIFVDRDGALFSFILDFLRNHELLLPSDFADHHRLQREALFYELDSLVDLLSQFLLQSRSAVMEVHFLNQNTQAFFRVFGSCSKTIEMLSGRITMFVERPTALTGNRNSPLALPPQRPSHHDLLFHCGSDGAAENQAGVRYISIKPDNRKLANGTNVLGLLVDTLLKEGFHLVSTRTPASGEKSECYVFERITTPQVLGMSKTPKSETTTMPAPSQK", "length": 264 }, "evidence": [ { "id": "F1RK26", "url": "https://omabrowser.org/oma/group/F1RK26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863D4-1", "protein_name": "Potassium channel regulatory protein", "gene_name": "KCNRG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGQELVTLNVGGKVFTTRSSTLQQFPGSRLMRMLDGRDKEFKMVDGQIFVDRDGVLFSFILDFLRTQQLLLPTDFSDHLRLQREALFYELNPLVDLLNQEHKLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFIEQPSAPASSSNSFPQMTLLPLPPQRPSYHDLVFQCGSDSTTDNQTRIRYISIKPDNRKLANGTNVLGLLIDTLLMEGFHLVGTRTVSSEDRTECYSFERIKKPDALAMNKTLKSETTLMPEQ", "length": 267 }, "evidence": [ { "id": "F1RK26", "url": "https://omabrowser.org/oma/group/F1RK26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8N5I3-1", "protein_name": "Potassium channel regulatory protein", "gene_name": "KCNRG", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSQELVTLNVGGKIFTTRFSTIKQFPASRLARMLDGRDQEFKMVGGQIFVDRDGDLFSFILDFLRTHQLLLPTEFSDYLRLQREALFYELRSLVDLLNPYLLQPRPALVEVHFLSRNTQAFFRVFGSCSKTIEMLTGRITVFTEQPSAPTWNGNFFPPQMTLLPLPPQRPSYHDLVFQCGSDSTTDNQTGVRYVSIKPDNRKLANGTNVLGLLIDTLLKEGFHLVSTRTVSSEDKTECYSFERIKSPEVLITNETPKPETIIIPEQSQIKK", "length": 272 }, "evidence": [ { "id": "F1RK26", "url": 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"site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK67-1", "uniprot_ac": "F1RK67", "uniprot_id": "F1RK67_PIG", "mass": { "chemical_mass": 83192.0, "monoisotopic_mass": 83192.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Chromosome 3 C16orf96 homolog", "type": "synonym", "evidence": [ { "id": "F1RK67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK67/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK67", "url": "https://www.uniprot.org/uniprotkb/F1RK67" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RK67", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000007940", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007940", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR032013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PKDRAHK", "url": "https://omabrowser.org/oma/group/PKDRAHK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47080:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47080:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RK67", "url": "https://www.uniprot.org/uniprotkb/F1RK67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK67-1", "url": "https://www.uniprot.org/uniprotkb/F1RK67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSQNASPADPNLSRMSFSLTFSELVNIALPQCGVLNFKALHLLLQGILEHIHMAELKKVLPGDEDFLQTPQAVSTPREGDVQPILNPMQGLGSVFDQVVSRVDRMESQLALLQDLPSTSQLLEGSKGTGQPAQDLWQQIKLRKMVEGNEEAVAKSMKTLQDLLTDIYALKVTIETLKKDVAMLKVIVGKISLQSRIVTIPKPEDVVLWSSLHEAMFTPGTAPAMVDDADLWQIAGHVPEMDLRTPERYKAASRSQVSEAIRHPRLLESAWHYQVPGQLPEEESPQEVPLSKAQEREQPQTLDPGPRPGPGPALGPQPTPAGSWPVPPRGWPPPRDLPGTSTGPFWGLGYFQPGLGPPGSLPAQLRGSGAPPPAVELGSAWPRSLWSRYRQAETPRLSSVSEKMEERDSAEVGVPQDGAPRAGTPKEALSEGPQSDLQRLKSSAATAAAAAATYAAAATSAAQAAKAAARLIRDTPTTKLPTIATSTATSGPSGVPGDIQGTGSPRGASSSVAFTDDGEPEDLREMDYEEILSPSLSPPGMALSQAMLAAKQATTPEDKKKAVRSSMNHMAWMPVRHDSLKGELAQLSASLEQRMTYLANMGASSKLGTTVDVLQEKIGILQKSRMREEELERIWGHQIEMIKDHHVVLDRAVDKLQTHLDELKVVHSQIKNLEMYKADKTVMEQELKEKADRSTLASKASRADLDTMAMELNEMIQGMLFRVMANEDDWKKAVAQLGKDLRTKATCHRPQCPPAVAAAASQRQQL", "length": 766, "header": "tr|F1RK67-1|F1RK67_PIG Isoform 1 of Chromosome 3 C16orf96 homolog OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=F1RK67-1" }, "isoforms": [ { "isoform_ac": "F1RK67-1", "url": "https://www.uniprot.org/uniprotkb/F1RK67/entry", "sequence": { "sequence": "MDSQNASPADPNLSRMSFSLTFSELVNIALPQCGVLNFKALHLLLQGILEHIHMAELKKVLPGDEDFLQTPQAVSTPREGDVQPILNPMQGLGSVFDQVVSRVDRMESQLALLQDLPSTSQLLEGSKGTGQPAQDLWQQIKLRKMVEGNEEAVAKSMKTLQDLLTDIYALKVTIETLKKDVAMLKVIVGKISLQSRIVTIPKPEDVVLWSSLHEAMFTPGTAPAMVDDADLWQIAGHVPEMDLRTPERYKAASRSQVSEAIRHPRLLESAWHYQVPGQLPEEESPQEVPLSKAQEREQPQTLDPGPRPGPGPALGPQPTPAGSWPVPPRGWPPPRDLPGTSTGPFWGLGYFQPGLGPPGSLPAQLRGSGAPPPAVELGSAWPRSLWSRYRQAETPRLSSVSEKMEERDSAEVGVPQDGAPRAGTPKEALSEGPQSDLQRLKSSAATAAAAAATYAAAATSAAQAAKAAARLIRDTPTTKLPTIATSTATSGPSGVPGDIQGTGSPRGASSSVAFTDDGEPEDLREMDYEEILSPSLSPPGMALSQAMLAAKQATTPEDKKKAVRSSMNHMAWMPVRHDSLKGELAQLSASLEQRMTYLANMGASSKLGTTVDVLQEKIGILQKSRMREEELERIWGHQIEMIKDHHVVLDRAVDKLQTHLDELKVVHSQIKNLEMYKADKTVMEQELKEKADRSTLASKASRADLDTMAMELNEMIQGMLFRVMANEDDWKKAVAQLGKDLRTKATCHRPQCPPAVAAAASQRQQL", "length": 766, "header": "tr|F1RK67-1|F1RK67_PIG Isoform 1 of Chromosome 3 C16orf96 homolog OS=Sus scrofa OX=9823 GN= PE=4 SV=2 CANONICAL=F1RK67-1" }, "locus": { "chromosome": "3", "start_pos": 37800058, "end_pos": 37773684, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008702.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008702.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008478.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008478.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 319, "start_aa": "Thr", "end_pos": 319, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr319", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK67", "url": "https://www.uniprot.org/uniprotkb/F1RK67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A6NNT2-1", "protein_name": "Uncharacterized protein C16orf96", "gene_name": "C16orf96", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFSLTFTELANIAIPQCGVLNFKALHLLLHGILEHIHMAELKKVLSGDEDFLQTSQVVIMPREGDAQPILNPMKRLSNVFDHVVSRLDKLENQLALLQDLPSTAQLLEASQGTARPVQDLWHLIKLRKMVEGHDEVMAKSMQTLQDLLTDLHALQVTITALRKEVDMLKNMLDKVHPERMDIFAEDFKIQNWKMVALQREVASLQNKFKTIPKTEDMVLWSGLHDAMFTSEIGSSPLDLWQSVEQLPEAALAQTTKYLEATRAIQVSEPVQNPQLLQTVWHYEVPELLPEGSSAQAVSLSRAQEPAQPPALTPESAPGCTTEFAPGPAPGTEPVPGLELGLELEPVPALGPVPGPSVTPGSLPAPWPVLGPVPAPGAQPPPLGDWPALPRRWPLPQGWPRVGSWPLWDLGVLRPTQPQPSRAPPPATEFGSLWPRPLQPYQSRQGEALQLAAVQVKGEENDVPSLRGLRERARKDGAPKDRTRKDGVPKDRGGKDVDPKDRAHKDDVPKDRGGKDVDPKDRAHKDDVPKDRGGKDGDPKDRVGKDGAPKEAQPKAPQSALHRLKTTAAIAAAAAAAYAAATSSAAQAAKVAAKFVKDAPATKMAAIATDTAAAGPLGVFADVLGAGPSRGATESQILGDDSEIYEILSPSYSAASIGPDPALSQAMVATKQAMSPEDKKRAVKYSMSHIAQIPVKHDSLKEEFAQLSCNLNQRLSYLANMGGPSSLGTTVDILQKKIGSLQKSRLKEEELERIWGNQIEMMKDRYITLDKAVENLQIRMDEFKTLQAQIKRLEMNKVNKSTMEEELREKADRSALAGKASRVDLETVALELNEMIQGILFKVTIHEDSWKKAMEELSKDVNTKLVHSDLDPLKKEMEEVWKIVRKLLIEGLRLDPDSAAGFRRKLFKRVKCISCDRPVEMMTGPQLITIRKAHLLSRLRPASANSCEYLQRQQMREQQWLQLQDLGIQEDCQQDWGDGPQNATSLKCKSCNLLTLYPYGDPHVIDYDSAEVDILGVDGILYKGRVNSQRGAQPLAVAKELAAVKAPSPPSQSLYDRVHSSALFGAICPPLCPRSSACSAASGPHLTMPARPPSLPPLLLLPPLIPSLRDPQQAPGSTRLSRAPHIESRVGRKPPEEPANP", "length": 1141 }, "evidence": [ { "id": "F1RK67", "url": "https://omabrowser.org/oma/group/F1RK67/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E9QMW4-1", "protein_name": "Uncharacterized protein C16orf96 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFSITFTELVNVAIPQCGVVNFKALHLLLQGILEHIQITELKKVLSGEEDFLQSSPAVFIPREGDAQPVINPMKRLSNIFDQVVDRIEKIESKLAEMQDIPTTSQLVEESYGDKRPAEEMWNNIKIQKRIEGNEKATEKFTRTLQDLLNDLHVLKGSVETVQKDVDTIKFIFEKVNPQKLELLGDDLKTQSRKLGALQREVVTLQNKVRAVPQPEEMVLWSGLHEAMFSPEQQKLEVEPSGVWQSMVSLPGSPLEQPEDAGYIHIPIHSATPVPTMVQLGTTGALREEELTRAVELADSQRPELAQAFVSQTQRLERAQASVSQTQRLERAQASVSQTQRLERAQASVSQTQNLRQTAPFPFPVPGFVPGPDFMPVYGPRPGMATPSAWALPRGLARGNYWPIWGIGPYQPGQGPLQPMGPMPRVPFPAMGSDIPWTQPLPQGTQWYPNIEERGPEYEEQYPEGYQEEMPMDEAPQEEMAVYGALEEEIPTEGAPQDGIPKGRARERISKEKVPKYRTPKERVSYHKASKDVSPEDTGTKDEAPEVKVLKKVVYKDRPQKDKAPEPRRKGPSSAIKKLRSAIASAAAAAAAYAAHANSAAQLAKDAVKAIQDVPANQLAAKAALIASSGPLGAFADFLGAGFGHGATSNTPFDEGELEEFPEEFAAPFNPFTSKPVLSQAMISATQATSPEEKKKAVQYSMGHIAQMPSRHNSLKEEFTNLSTTLNQRLNYLANMGSSGVLGSTVNVLEEKIINLQKARLQEEELERVWGHQIDTMKSHYMVLDRAVERLQIRMDDLKILKAEIERLDLVKADKNVMDLELNEKANRDALASKANRVDLETVAMELNEMIHSMLLKITNYESDWKKALKHLRKDLNTKLVQSDLNSLKKDIEEVWKVVRKLLLEGLRFDPDSAAGFKKKLFERVKCISCDRPVEMMTGPQLITIRNTHGLSRIRPASANSYEYLQRQLIREQQQHLHFQNFGVHEEGQGFQKDWGDGPRNENTLKHKSHDLSTLYPYGDPELMNYDTAEVDILGVDGVLYKGRMSSQFGTRTGEKDIAAVKVSYYTIPNLTDRVRPGSLLAPGYPPLSPRTSITSATTLHSATNTTTARPPSLPPVPQLPPLIPVSRDTQEAPGSAKRLKSPRL", "length": 1145 }, "evidence": [ { "id": "F1RK67", "url": "https://omabrowser.org/oma/group/F1RK67/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RK67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK67" }, { "id": "PF16043", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16043" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF4795", "eco_id": "ECO_0000259", "start_pos": 649, "end_pos": 744, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 319 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK76-1", "uniprot_ac": "F1RK76", "uniprot_id": "F1RK76_PIG", "mass": { "chemical_mass": 21681.0, "monoisotopic_mass": 21681.0 }, "refseq": {}, "gene_names": [ { "name": "GSC2", "type": "recommended", "evidence": [ { "id": "F1RK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ] } ], "protein_names": [ { "name": "Homeobox protein goosecoid-2", "type": "recommended", "evidence": [ { "id": "F1RK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK76/entry#names_and_taxonomy" } ] }, { "name": "Homeobox protein goosecoid-like", "type": "synonym", "evidence": [ { "id": "F1RK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK76/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May have a role in development. May regulate its own transcription. May bind the bicoid consensus sequence TAATCC.", "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76#function" }, { "database": "UniProtKB", "id": "ARBA00058160", "url": "https://www.uniprot.org/uniprotkb/ARBA00058160#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GSC2", "url": "https://www.uniprot.org/uniprotkb/F1RK76", "locus": { "chromosome": "14", "start_pos": 50957991, "end_pos": 50960193, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062065", "url": "https://www.ensembl.org/id/ENSSSCG00000062065" } ] } } ], "crossref": [ { "id": "F1RK76", "url": "https://alphafold.ebi.ac.uk/entry/F1RK76", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010115", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010115", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46643", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46643", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46643:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46643:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK76-1", "url": "https://www.uniprot.org/uniprotkb/F1RK76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GMTAAGGASGRRGSGRLCPFSIEHILSGLPERSPPARAAPPPLAAGRQSPAEPGAPGTPEAAPCACCCCCGPRAAPQRAPEPASGLGARLPWPVRLGPTAPLPLASSTEGSGALPGAGSPGPQRRTRRHRTIFSEEQLQALEALFVQNQYPDVGTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASGRLLPGAKKPPKESC", "length": 205, "header": "tr|F1RK76-1|F1RK76_PIG Isoform 1 of Homeobox protein goosecoid-2 OS=Sus scrofa OX=9823 GN=GSC2 PE=3 SV=3 CANONICAL=F1RK76-1" }, "isoforms": [ { "isoform_ac": "F1RK76-1", "url": "https://www.uniprot.org/uniprotkb/F1RK76/entry", "sequence": { "sequence": "GMTAAGGASGRRGSGRLCPFSIEHILSGLPERSPPARAAPPPLAAGRQSPAEPGAPGTPEAAPCACCCCCGPRAAPQRAPEPASGLGARLPWPVRLGPTAPLPLASSTEGSGALPGAGSPGPQRRTRRHRTIFSEEQLQALEALFVQNQYPDVGTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASGRLLPGAKKPPKESC", "length": 205, "header": "tr|F1RK76-1|F1RK76_PIG Isoform 1 of Homeobox protein goosecoid-2 OS=Sus scrofa OX=9823 GN=GSC2 PE=3 SV=3 CANONICAL=F1RK76-1" }, "locus": { "chromosome": "14", "start_pos": 50960193, "end_pos": 50958995, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095321.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095321.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076969.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076969.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 99, "start_aa": "Thr", "end_pos": 99, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr99", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RK76", "url": "https://www.uniprot.org/uniprotkb/F1RK76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RK76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 205, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RK76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RK76" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK76" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 184, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 99 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK78-1", "uniprot_ac": "F1RK78", "uniprot_id": "F1RK78_PIG", "mass": { "chemical_mass": 52593.0, "monoisotopic_mass": 52593.0 }, "refseq": {}, "gene_names": [ { "name": "ESS2", "type": "recommended", "evidence": [ { "id": "F1RK78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK78" } ] } ], "protein_names": [ { "name": "Ess-2 splicing factor homolog", "type": "synonym", "evidence": [ { "id": "F1RK78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK78/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK78", "url": "https://www.uniprot.org/uniprotkb/F1RK78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ESS2", "url": "https://www.uniprot.org/uniprotkb/F1RK78", "locus": { "chromosome": "14", "start_pos": 50945122, "end_pos": 50955983, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010114", "url": "https://www.ensembl.org/id/ENSSSCG00000010114" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010114", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010114", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155571", "url": "https://www.ncbi.nlm.nih.gov/gene/100155571", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155571", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155571", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AQNDYLD", "url": "https://omabrowser.org/oma/group/AQNDYLD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RK78", "url": "https://www.orthodb.org/?gene=F1RK78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12940", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12940", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12940:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12940:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09751", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09751", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RK78", "url": "https://www.uniprot.org/uniprotkb/F1RK78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK78-1", "url": "https://www.uniprot.org/uniprotkb/F1RK78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METPGPPARTLMLPAASRPRRKRAAGEAGPATSRQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHTGSGVVGSKARGRGRGLEDGTGESVKEEEEAALPSLDVFLSRYTSEDNASFQEVMEVAKEKSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAGVETWKYKAKNSLMYYPEGVPDEEQLFKKPRQVVHKNTRFLKDPFSQALSRSQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGFVATPSPAPGVNESPLMTWGEVENTPLRVEGSESPYVDRTPGPAFKILEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTPSPARSAHLKTPAGGPQTPTSTPAPGSATRTPLSQDPACITDNLLQLPARRKASDFF", "length": 478, "header": "tr|F1RK78-1|F1RK78_PIG Isoform 1 of Ess-2 splicing factor homolog OS=Sus scrofa OX=9823 GN=ESS2 PE=3 SV=2 CANONICAL=F1RK78-1" }, "isoforms": [ { "isoform_ac": "F1RK78-1", "url": "https://www.uniprot.org/uniprotkb/F1RK78/entry", "sequence": { "sequence": "METPGPPARTLMLPAASRPRRKRAAGEAGPATSRQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHTGSGVVGSKARGRGRGLEDGTGESVKEEEEAALPSLDVFLSRYTSEDNASFQEVMEVAKEKSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAGVETWKYKAKNSLMYYPEGVPDEEQLFKKPRQVVHKNTRFLKDPFSQALSRSQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGFVATPSPAPGVNESPLMTWGEVENTPLRVEGSESPYVDRTPGPAFKILEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTPSPARSAHLKTPAGGPQTPTSTPAPGSATRTPLSQDPACITDNLLQLPARRKASDFF", "length": 478, "header": "tr|F1RK78-1|F1RK78_PIG Isoform 1 of Ess-2 splicing factor homolog OS=Sus scrofa OX=9823 GN=ESS2 PE=3 SV=2 CANONICAL=F1RK78-1" }, "locus": { "chromosome": "14", "start_pos": 50955946, "end_pos": 50945389, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011075.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011075.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010787.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010787.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 104, "start_aa": "Thr", "end_pos": 104, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr104", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 305, "start_aa": "Thr", "end_pos": 305, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr305", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 443, "start_aa": "Thr", "end_pos": 443, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr443", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK78", "url": "https://www.uniprot.org/uniprotkb/F1RK78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155571", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155571", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZV89-1", "protein_name": "DiGeorge syndrome critical region 14", "gene_name": "DGCR14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAVPAPSPGALVPVAAEAGAVVRSREAVGSAAKRPKKILDEDAYIESLENIIQRDFFPDVEKLRAQKEYLEAEENGDLEKMRQIAIKFGSSLGKSSRDTPVPYVTPATFETPEVHPSGLPLGNNSRAGTRAAEEGETEKDDKDALPNLDSFLAKHTSEDNASFEQIMEVAKEKEKVKHAWLYSAEEEYAQRRNKNLALPSAEQQALENVKAGLETWEYTARNTLMYYPTGVPDEEDTFKKPREVVHRNTRFVKDPFSQAVSKSQLQQAAALNAQYKQGKVGPDGKELIPQESPKVNGYGFVTTPSPAPGVNESPFMTWGEIETTPLRLDGSETPYVDRTPGPAFKILEPGRRERLGLKMANEVAAKNRAKKQEALRKVTENLASLTPKGLSPAMSPALQRLVNRTASKYTDKALRASYTPSPAHTGTPGYKTPANGPQTPTTTPQSRTVSQTPVSQDTTSITDNLLQLPKRRKASDFF", "length": 479 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QAX0-1", "protein_name": "Splicing factor ESS-2 homolog", "gene_name": "ess2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAESREKAVCLRSDVTTVAVRNPVEESKKPKRKILDEEQYIESLEKIIQRDFFPDVSKLQAQKDYLEAEENGDLERMREIAIKYGSAMAKYTPRTYVPHVTPSTFETPDGRSASPSSSQSKSRAAREDGKDGEKASEKDLPSLDRFLSKNTSEDNASFEQIMELAEDKDKLRHAWLYEAENEYKERHEQNLALPSSEKQALECTKAGLETWQYKAKNSLMYYPEGEKDDTLFKKPREVLYKNTRFEDDPFCKALNKSQIQQAAALNAQFKQGKVGPDGKELLPHESPKVNGYGYEGAPSPAPGVAESPLMTWGEIESTPFRLEGSDTPLVERSHGPSFKIPEPGRRERLGLKMANEAAAKNRAKKQEALRKVTENLASLTPKGLSPAALSPALQRLVNRSSSKYTDKALRASYTPSPAHRSLGAKTPSGGLTTLTPTPTKTRTPASQDPASITDNLLQLPKRRKAQDYF", "length": 469 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F7ESE9-1", "protein_name": "Ess-2 splicing factor homolog", "gene_name": "Ess2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTPGVSAGALFLSSASAPPRKRAAGEAGEAGVAKSKQRVLDEEEYIEVPGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKISREPPPPYVTPATFETPEVHPGSGVLGSKPRPQGRDPEDAGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKEKSHARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAGVETWKYKAKNSLMYYPEGVPDEEQLFKKPRQIVHKNTRFLRDPFSQALSRSQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGFVATPSPAPGMNESPLMTWGEVENTPLRVEGSESPYVDRTPGPTFKILEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTPSPARSTHLKTPAGGPQTPTSTPAPGSATRTPLTQDPASITDNLLQLPARRKASDFF", "length": 482 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HER2-1", "protein_name": "Splicing factor ESS-2 homolog", "gene_name": "Ess2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGTPGASVGPLFPPSASVPPRKRAAGETGVARSRQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKISREPPPPYVTPATFETPEVHTGSGVVGSKLRPQGRDLDDGEARDEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKEKSHARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQAGVETWKYKAKNSLMYYPEGVPDEEQLFKKPRQVVHKNTRFLRDPFSQALSRSQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGFVATPSPAPGMNESPLMTWGEVENTPLRVEGSESPYVDRTPGPTFKILEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTPSPARSTHLKTPAGGPQTPTSTPAPGSATRTPLTQDPASITDNLLQLPARRKASDFF", "length": 476 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O44424-1", "protein_name": "Splicing factor ESS-2 homolog", "gene_name": "Es2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSATTRTPATPGTPGTPGSLAMEVARVQNSALAEFKKPTAMVRHKNKPKILTEEKYIEEMSKIIQRDFFPDLERLRAQNDYLDAESRRDFVQMAEIRERYSLGRISGTGRSTSRRNNAMSPATFETPVSQAKCSNTPLPNSRATDTPFSTDGSEKSDAEGRDTTAKLSLDAFLQKYTSEDNQSFQEIIETAEAKLRQKYAVLYNHEKLSAEQLQRALMLPSIETQFEEPDPLRKIETWNYTNMNSIMYVPDGVEYTEEERVQLAERKQSIQHNATRLPDEAKHREMDTKKLNDEVPQNGAGGATATPKVRGFDLLRSPSPRPGEAFSPIMTWGEIDGTPFRLDGGDTPLRPTQGPSFRINENSRRENIAIALAERVSERMRNQKQMALDTARRNIGSPLIRTNMERLASMSPAAQLLATGKLGIRGTPRLRHTPSPMSGRKRKVTPGVVRSTNTPILGEPKPKQQAKISTPAKNVTIDTGSTLTDDLLKIPTKRRTAADFF", "length": 501 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q54D61-1", "protein_name": "DiGeorge syndrome critical region 14-like protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNNSNKKYRVINEEKYVDSLNKIIVRDFFPDLPNLRDQLEWMEAVETNDLDRIRSVQLASLRKETTVRRQHDDITPSINNNNNNSTSFETPIIHNEFDNNSNNNNQDNKKINNIEDDDKHIENTNLDNFVNTFVSEDDASYIDIQKKQNERILIKYKWLFDKAKEINKHNQLQLEGNKGTTTTTTTTTTTTTTTNKNLSSIIEYKPPKNIVPDTWNYKVRNTLMFKPENLDPSFNREIIGGPPKEIQHSNTRITGNIWENEPKPQNINRFRDSNNNKPFSEMTLQEQIEKLKQLEEEGKSSMEIENSTFGYLSTPQIIPGRSIDDSSGGGGGGVGESPLMTWGRVDGTPLLLDSRPISTPLDIKLRGSGAPSFKIPETPKREQLANKLFEKVAVSKTKSQQSPIVNRNKRNSTGGMTPTRSLESLSPAAQRLLQAKGSLTPTHIKSKNHIDDQLRKSYTSLSPSPKKQVSNNFTPTPITPKSTPSNLSRNIYNNDTKKTTTTIKTTAAPLPNPSNSSITDNLLDFT", "length": 527 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q96DF8-1", "protein_name": "Splicing factor ESS-2 homolog", "gene_name": "ESS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METPGASASSLLLPAASRPPRKREAGEAGAATSKQRVLDEEEYIEGLQTVIQRDFFPDVEKLQAQKEYLEAEENGDLERMRQIAIKFGSALGKMSREPPPPYVTPATFETPEVHAGTGVVGNKPRPRGRGLEDGEAGEEEEKEPLPSLDVFLSRYTSEDNASFQEIMEVAKERSRARHAWLYQAEEEFEKRQKDNLELPSAEHQAIESSQASVETWKYKAKNSLMYYPEGVPDEEQLFKKPRQVVHKNTRFLRDPFSQALSRCQLQQAAALNAQHKQGKVGPDGKELIPQESPRVGGFGFVATPSPAPGVNESPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEPGRRERLGLKMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTDRALRASYTPSPARSTHLKTPASGLQTPTSTPAPGSATRTPLTQDPASITDNLLQLPARRKASDFF", "length": 476 }, "evidence": [ { "id": "F1RK78", "url": "https://omabrowser.org/oma/group/F1RK78/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1RK78", "url": "https://www.uniprot.org/uniprotkb/F1RK78" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1RK78", "url": "https://www.uniprot.org/uniprotkb/F1RK78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 104, 305, 443 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 }, { "start_pos": 313, "end_pos": 315 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK91-1", "uniprot_ac": "F1RK91", "uniprot_id": "F1RK91_PIG", "mass": { "chemical_mass": 78690.0, "monoisotopic_mass": 78690.0 }, "refseq": { "ac": "XP_003124671", "name": "SEC14-like protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124671" }, "gene_names": [ { "name": "SEC14L5", "type": "recommended", "evidence": [ { "id": "F1RK91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK91" } ] }, { "name": "SEC14L5", "type": "synonym", "evidence": [ { "id": "XP_003124671", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124671" } ] } ], "protein_names": [ { "name": "SEC14 like lipid binding 5", "type": "synonym", "evidence": [ { "id": "F1RK91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK91/entry#names_and_taxonomy" } ] }, { "name": "SEC14-like protein 5", "type": "synonym", "evidence": [ { "id": "XP_003124671", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124671" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK91", "url": "https://www.uniprot.org/uniprotkb/F1RK91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEC14L5", "url": "https://www.uniprot.org/uniprotkb/F1RK91", "locus": { "chromosome": "3", "start_pos": 37397120, "end_pos": 37443234, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007926", "url": "https://www.ensembl.org/id/ENSSSCG00000007926" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007926", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007926", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524795", "url": "https://www.ncbi.nlm.nih.gov/gene/100524795", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524795", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524795", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YHTKQVP", "url": "https://omabrowser.org/oma/group/YHTKQVP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RK91", "url": "https://www.orthodb.org/?gene=F1RK91", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124671", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RK91", "url": "https://www.uniprot.org/uniprotkb/F1RK91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK91-1", "url": "https://www.uniprot.org/uniprotkb/F1RK91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQKYQSPVRVYKYPFELVMAAYEKRFPTCPQIPVFLGSEVLHESRSADGAVHVVERSCRLRVEAPRLLRKIAGVEHVVFVQRNVLNWKERTLLIEAHNETLASRVVVKENCSYTVHPENEEWTCFEQSASLDIRSFFGFESALEKIAMKQYTANIKRGKEVIEHYLKELISQGTSHIPRWTPAPVPQEDAHPQGGLRDPGSLEVCRPGSAGGPSTETVGTEGDKLDTDYIERCLGHLTPMQESCLIQLRHWLQETHKGKIPKDEHILRFLRARDFHLERAWEMLCQSLSWRKQHQVDLLLQTWRPPALLQEFYAGGWHYQDIDGRPLYILRLGHMDTKGLMKAVGEEVLLQHVLSVNEEGQKRCEGNTKQFGRPISSWTCLVDLEGLSLRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLISPFINENTRQKFLIYSGSNYQGPGGLVDYLDKDVIPDFLGGECLCNIPEGGLVPKSLYMTEEDQEHEDQLRQWTETYQSASVLRGSPHEVVVEIVERESVITWDFDILRGDVLFSLYHAKQAPTLGPQEPGARAGGQQTDKGRALGGDYSRVEAPLVCREGDSIQGSHVTRWPGVYLLQWQMHSAPGHGACSLPGVEDVLTALQSPGPRCRLLYYYEVLASEDFRGSMSSLESCTSRFSQLSAATSSSSSGHSHSSSLVSR", "length": 696, "header": "tr|F1RK91-1|F1RK91_PIG Isoform 1 of SEC14 like lipid binding 5 OS=Sus scrofa OX=9823 GN=SEC14L5 PE=4 SV=1 CANONICAL=F1RK91-1" }, "isoforms": [ { "isoform_ac": "F1RK91-1", "url": "https://www.uniprot.org/uniprotkb/F1RK91/entry", "sequence": { "sequence": "MVQKYQSPVRVYKYPFELVMAAYEKRFPTCPQIPVFLGSEVLHESRSADGAVHVVERSCRLRVEAPRLLRKIAGVEHVVFVQRNVLNWKERTLLIEAHNETLASRVVVKENCSYTVHPENEEWTCFEQSASLDIRSFFGFESALEKIAMKQYTANIKRGKEVIEHYLKELISQGTSHIPRWTPAPVPQEDAHPQGGLRDPGSLEVCRPGSAGGPSTETVGTEGDKLDTDYIERCLGHLTPMQESCLIQLRHWLQETHKGKIPKDEHILRFLRARDFHLERAWEMLCQSLSWRKQHQVDLLLQTWRPPALLQEFYAGGWHYQDIDGRPLYILRLGHMDTKGLMKAVGEEVLLQHVLSVNEEGQKRCEGNTKQFGRPISSWTCLVDLEGLSLRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLISPFINENTRQKFLIYSGSNYQGPGGLVDYLDKDVIPDFLGGECLCNIPEGGLVPKSLYMTEEDQEHEDQLRQWTETYQSASVLRGSPHEVVVEIVERESVITWDFDILRGDVLFSLYHAKQAPTLGPQEPGARAGGQQTDKGRALGGDYSRVEAPLVCREGDSIQGSHVTRWPGVYLLQWQMHSAPGHGACSLPGVEDVLTALQSPGPRCRLLYYYEVLASEDFRGSMSSLESCTSRFSQLSAATSSSSSGHSHSSSLVSR", "length": 696, "header": "tr|F1RK91-1|F1RK91_PIG Isoform 1 of SEC14 like lipid binding 5 OS=Sus scrofa OX=9823 GN=SEC14L5 PE=4 SV=1 CANONICAL=F1RK91-1" }, "locus": { "chromosome": "3", "start_pos": 37442156, "end_pos": 37401105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008687.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008687.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008463.1", "url": "https://www.ensembl.org/id/ENSSSCP00000008463.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK91", "url": "https://www.uniprot.org/uniprotkb/F1RK91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524795", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524795", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A8B0-1", "protein_name": "SEC14-like lipid binding 5", "gene_name": "Sec14l5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVQKYQSPVRVYKYPFELVMAAYEKRFPTCPLIPVFLGSEVLSECRSADGAVHTVERSCRLRVDAPRLLRKIAGVEHVVFIQRNVLNWRERTLLIDAHNETFASRVTVKEHCRYTVHPENEDWTCFEQSASLDVRSFFGFESTLEKIAMKQYTANVKRGKEVIEHYLSELISQGASHIPRWTPAPVREADVRSQLVCPCPSSLETDGPSDAPAPASEMATADGDKLDADYIERCLGHLSPMQESCLVQLRRWLQETHKGKIPKDEHILRFLRARDFHLDKARDMLCQSLSWRKQHQVDLLLQTWRPPAPLQEFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKAVGEEALLQHVLSVNEEGQKRCEGNTRQFGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLVSPFINENTRRKFLIYSGSNYQGPGGLVDYLDKDVIPDFLGGESVCNVPEGGMVPKSLYLTEEEQEQADQLRQWSETYHSASVLRGSPHEVAMEIPEGESVITWDFDILRGDVVFSLYHAKQAPKLSPQEPGVRASGQLIDKNWILGVDYSRVEAPLICREGQSIQGSHVTQWPGVYLLQWQIHSPPESVACSLPGVDDVLTALHSPGPKCKLLYYCEVLASEDFRGSMSSLESCASRFSQLSATTTSSSSGQSHSGSMVSR", "length": 696 }, "evidence": [ { "id": "F1RK91", "url": "https://omabrowser.org/oma/group/F1RK91/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BJN6-1", "protein_name": "SEC14 like lipid binding 5", "gene_name": "SEC14L5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVQKYQSPIRVYKHPFELVMVAYEKRFPTCPQIPVFLGSEVLRESRSADGAVHVVERSCRLRVEAPRLLCKIAGVEHVVFVQRNVLNWKERTLFIEAHNETFASRVVVKENCSYRVHPENEDWTCFEQSASLDIRSFFGFESALEKIAMRQYTANVKRGKEVIEHYLNELISQGTSHIPRWTPALAREEDAPSQAGQREPDSLEVCGPSSAQDLAPESVSTDGDKLDADYIERCLGHLTPRQESCLVQLRRWLQETHKGKIPKDEHILRFLRARDFHLDRAREMLCQSLSWRKQHQVDLLLETWRPPALLEEFYAGGWHYQDIDGRPLYILRLGHMDTKGLMKAVGEEVLLRHILSVNEEGQKRCEGNTKQFGRPISSWTCLVDLEGLSLRHLWRPGVKALLRMIEVVEGNYPETLGRLLIVRAPRVFPVLWTLISPFINENTRQKFLIYSGSNYQGPGGLVDYLDKDVIPDFLGGECLCNVPEGGLVPKSLYLTEEDQENEDQLWQWRETYHSASVLRGAPHEVTVEILERESVITWDFDILRGDVVFSLYHAKQASMPGPREPGARASGQLMDRGWALGANFSCVEAPLICREGESIQGSHVTRWPGIYLLQWQMHSPPAHMACSLPGVEDVLTALHSPGPRCKLLYYYEVLASEDFRGSMSSLESCTSRFSQLSAATSSSSAPSHSSSLVSR", "length": 695 }, "evidence": [ { "id": "F1RK91", "url": "https://omabrowser.org/oma/group/F1RK91/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O43304-1", "protein_name": "SEC14-like protein 5", "gene_name": "SEC14L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVQRYQSPVRVYKYPFELVMAAYEKRFPTCPQIPVFLGSEVLRESRSPDGAVHVVERSCRLRVDAPRLLRKIAGVEHVVFVQTNILNWKERTLLIEAHNETFANRVVVNEHCSYTVHPENEDWTCFEQSASLDIRSFFGFENALEKIAMKQYTANVKRGKEVIEHYLNELISQGTSHIPRWTPAPVREEDARNQAGPRDPSSLEAHGPRSTLGPALEAVSMDGDKLDADYIERCLGHLTPMQESCLIQLRHWLQETHKGKIPKDEHILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLEEFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKAVGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLLIVRAPRVFPVLWTLISPFINENTRRKFLIYSGSNYQGPGGLVDYLDREVIPDFLGGESVCNVPEGGLVPKSLYMTEEEQEHTDQLWQWSETYHSASVLRGAPHEVAVEILEGESVITWDFDILRGDVVFSLYHTKQAPRLGAREPGTRASGQLIDKGWVLGRDYSRVEAPLVCREGESIQGSHVTRWPGVYLLQWQMHSPPSSVACSLPGVDDVLTALHSPGPKCKLLYYCEVLASEDFRGSMSSLESCTSGFSQLSAATSSSSSGQSHSSSLVSR", "length": 696 }, "evidence": [ { "id": "F1RK91", "url": "https://omabrowser.org/oma/group/F1RK91/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RK91", "url": "https://www.uniprot.org/uniprotkb/F1RK91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RK91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK91" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 306, "end_pos": 482, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RK91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK91" }, { "id": "PS50866", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50866" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GOLD", "eco_id": "ECO_0000259", "start_pos": 509, "end_pos": 653, "start_aa": "Thr", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RK91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK91" }, { "id": "PS50904", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50904" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PRELI/MSF1", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 175, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK97-1", "uniprot_ac": "F1RK97", "uniprot_id": "F1RK97_PIG", "mass": { "chemical_mass": 15900.0, "monoisotopic_mass": 15900.0 }, "refseq": { "ac": "XP_001929635", "name": "mitotic-spindle organizing protein 2B isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929635" }, "gene_names": [ { "name": "LOC100153925", "type": "recommended", "evidence": [ { "id": "F1RK97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK97" } ] }, { "name": "LOC100153925", "type": "synonym", "evidence": [ { "id": "XP_001929635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929635" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1RK97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK97/entry#names_and_taxonomy" } ] }, { "name": "mitotic-spindle organizing protein 2B isoform X3", "type": "synonym", "evidence": [ { "id": "XP_001929635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929635" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK97", "url": "https://www.uniprot.org/uniprotkb/F1RK97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100153925", "url": "https://www.uniprot.org/uniprotkb/F1RK97", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000010104", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010104", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153925", "url": "https://www.ncbi.nlm.nih.gov/gene/100153925", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9G3Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9G3Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9G3Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9G3Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9G40", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9G40&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR024332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153925", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153925", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETNRFAP", "url": "https://omabrowser.org/oma/group/ETNRFAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AYE6", "url": "https://www.orthodb.org/?gene=A0A287AYE6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RK97", "url": "https://www.orthodb.org/?gene=F1RK97", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28578", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28578", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28578:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28578:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009g3y", "url": "https://www.rcsb.org/structure/pdb_00009g3y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009g3z", "url": "https://www.rcsb.org/structure/pdb_00009g3z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009g40", "url": "https://www.rcsb.org/structure/pdb_00009g40", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9G3Y", "url": "https://www.rcsb.org/structure/9G3Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9G3Z", "url": "https://www.rcsb.org/structure/9G3Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9G40", "url": "https://www.rcsb.org/structure/9G40", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF12926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929635", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929635", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AYE6", "url": "https://www.uniprot.org/uniprotkb/A0A287AYE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK97", "url": "https://www.uniprot.org/uniprotkb/F1RK97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK97-1", "url": "https://www.uniprot.org/uniprotkb/F1RK97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPGAGPGPGAPPGLEAALQKLALRRKKVLSAEETELFELAQAAGGAMDPEVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPVAVPLPTTSVPETRGRNRGSSALGGGPALAERSGREGSSQRMPRQPSATRLPKGGGPGKSPTRST", "length": 155, "header": "tr|F1RK97-1|F1RK97_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100153925 PE=1 SV=1 CANONICAL=F1RK97-1" }, "isoforms": [ { "isoform_ac": "A0A287AYE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYE6/entry", "sequence": { "sequence": "MAAPGAGPGPGAPPGLEAALQKLALRRKKVLSAEETELFELAQAAGGAMDPEVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPVAVPLPTTSVPETREASFLSAKNCTPPARPSFSSARQTAASPILLHGPAASHSPLSPGPPGSLRFSCCLFSPFEGRNRGSSALGGGPALAERSGREGSSQRMPRQPSATRLPKGGGPGKSPTRST", "length": 215, "header": "tr|A0A287AYE6-1|A0A287AYE6_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100153925 PE=1 SV=1 CANONICAL=F1RK97-1" }, "locus": { "chromosome": "14", "start_pos": 50664223, "end_pos": 50658403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038026.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038026.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048909.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048909.1" } ] } }, { "isoform_ac": "A0A5G2QTS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS2/entry", "sequence": { "sequence": "MAAPGAGPGPGAPPGLEAALQKLALRRKKVLSAEETELFELAQAAGGAMDPEVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPVAVPLPTTSVPETREASFLSAKNCTPPARPSFSSARQTAASPILLHGPAASHSPLSPGPPGSLRFSCCLFSPFEGMLGAWARGAEEEPRGRWTKGEFAEGGKDQGRELLLLLLGLVTGYQAHSVLRA", "length": 217, "header": "tr|A0A5G2QTS2-1|A0A5G2QTS2_PIG Computationally mapped isoform of Mitotic-spindle organizing protein 2B OS=Sus scrofa OX=9823 GN=LOC100153925 PE=1 SV=1 CANONICAL=F1RK97-1" }, "locus": { "chromosome": "14", "start_pos": 50664223, "end_pos": 50662227, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087361.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087361.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067554.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067554.1" } ] } }, { "isoform_ac": "F1RK97-1", "url": "https://www.uniprot.org/uniprotkb/F1RK97/entry", "sequence": { "sequence": "MAAPGAGPGPGAPPGLEAALQKLALRRKKVLSAEETELFELAQAAGGAMDPEVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPVAVPLPTTSVPETRGRNRGSSALGGGPALAERSGREGSSQRMPRQPSATRLPKGGGPGKSPTRST", "length": 155, "header": "tr|F1RK97-1|F1RK97_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100153925 PE=1 SV=1 CANONICAL=F1RK97-1" }, "locus": { "chromosome": "14", "start_pos": 50664223, "end_pos": 50658403, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011065.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011065.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010777.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010777.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK97", "url": "https://www.uniprot.org/uniprotkb/F1RK97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Partial closure of the gamma-tubulin ring complex by CDK5RAP2 activates microtubule nucleation.", "journal": "Dev. Cell", "date": "2024", "authors": "Xu Yixin, Mu\u00f1oz-Hern\u00e1ndez Hugo, Krutyho\u0142owa Ro\u015bcis\u0142aw, Marxer Florina, Cetin Ferdane, Wieczorek Michal", "evidence": [ { "database": "UniProtKB", "id": "F1RK97", "url": "https://www.uniprot.org/uniprotkb/F1RK97" } ], "reference": [ { "type": "PubMed", "id": "39321808", "url": "https://glygen.org/publication/PubMed/39321808" } ] } ], "pathway": [ { "id": "ssc:100153925", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153925", "resource": "KEGG Pathway" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" } ], "orthologs": [ { "uniprot_canonical_ac": "Q6NZ67-1", "protein_name": "Mitotic-spindle organizing protein 2B", "gene_name": "MZT2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAQGVGPGPGSAAPPGLEAARQKLALRRKKVLSTEEMELYELAQAAGGAIDPDVFKILVDLLKLNVAPLAVFQMLKSMCAGQRLASEPQDPAAVSLPTSSVPETRGRNKGSAALGGALALAERSSREGSSQRMPRQPSATRLPKGGGPGKSPTRGST", "length": 158 }, "evidence": [ { "id": "F1RK97", "url": "https://omabrowser.org/oma/group/F1RK97/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RK97", "url": "https://www.uniprot.org/uniprotkb/F1RK97" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "F1RK97", "url": "https://www.uniprot.org/uniprotkb/F1RK97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RK99-1", "uniprot_ac": "F1RK99", "uniprot_id": "F1RK99_PIG", "mass": { "chemical_mass": 68496.0, "monoisotopic_mass": 68496.0 }, "refseq": {}, "gene_names": [ { "name": "SLC7A4", "type": "recommended", "evidence": [ { "id": "F1RK99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK99" } ] } ], "protein_names": [ { "name": "Solute carrier family 7 member 4", "type": "synonym", "evidence": [ { "id": "F1RK99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RK99/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RK99", "url": "https://www.uniprot.org/uniprotkb/F1RK99" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC7A4", "url": "https://www.uniprot.org/uniprotkb/F1RK99", "locus": { "chromosome": "14", "start_pos": 50633878, "end_pos": 50637404, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010102", "url": "https://www.ensembl.org/id/ENSSSCG00000010102" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010102", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010102", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43243", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43243", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43243:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43243:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RK99", "url": "https://www.uniprot.org/uniprotkb/F1RK99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RK99-1", "url": "https://www.uniprot.org/uniprotkb/F1RK99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRLARFCQKLKRRKPLEEATMETLLQRCLSTLDLTMLGVGAMVGSGLYVLTGTVAKEISGPAVIVSFGVAAVVSLMAALCYAEFGARVPRTGSAYLFTYVSMGELWAFLIGWDLVLEYLIGGAAVARAWSGYLDAMFNHRIRNFTEVHVGVWQVPFLAGYPDFLAAGILLLVSIFVSCGARVSSWLNHTLSAINMTVILFTIILGFILARPQNWGKQEGGFAPFGFSGILAGTATCFYAFVGFDVIAASSEEARNPKRAVPVAITVSLGLAASAYILVSTVVTLMVPWHHLAPDSALADAFYERGYGWAGYIVAIGSICSMNTVLLGILFSLPRIIYAMATDGLFFQAFAYVHPRTQVPVVGIMVFGALTAFVALLLDLEALVQFLSIGTLLAYTFVAISVIVLRFQKAPASSSTSPESSVPAAKEYNSFSDHIELVGTEQGPASEPGQLRPALRPYLGCLDRCCPGTAVAWAIGVLVVSGAILACTLTIGNSVLKLPHWGSVLLLLLSGGMFLLSLIVLGAYQQQRQQDIFQIPMVPLIPAVSIFLNICLMLKLSILTWLRFFIWLVIGLTVYFGYGMRHSKENQRELPGLTITRYVVFPSGSSLEETVQAVQPPSQAPAQESGHLEQPSSP", "length": 635, "header": "tr|F1RK99-1|F1RK99_PIG Isoform 1 of Solute carrier family 7 member 4 OS=Sus scrofa OX=9823 GN=SLC7A4 PE=4 SV=2 CANONICAL=F1RK99-1" }, "isoforms": [ { "isoform_ac": "F1RK99-1", "url": "https://www.uniprot.org/uniprotkb/F1RK99/entry", "sequence": { "sequence": "MASRLARFCQKLKRRKPLEEATMETLLQRCLSTLDLTMLGVGAMVGSGLYVLTGTVAKEISGPAVIVSFGVAAVVSLMAALCYAEFGARVPRTGSAYLFTYVSMGELWAFLIGWDLVLEYLIGGAAVARAWSGYLDAMFNHRIRNFTEVHVGVWQVPFLAGYPDFLAAGILLLVSIFVSCGARVSSWLNHTLSAINMTVILFTIILGFILARPQNWGKQEGGFAPFGFSGILAGTATCFYAFVGFDVIAASSEEARNPKRAVPVAITVSLGLAASAYILVSTVVTLMVPWHHLAPDSALADAFYERGYGWAGYIVAIGSICSMNTVLLGILFSLPRIIYAMATDGLFFQAFAYVHPRTQVPVVGIMVFGALTAFVALLLDLEALVQFLSIGTLLAYTFVAISVIVLRFQKAPASSSTSPESSVPAAKEYNSFSDHIELVGTEQGPASEPGQLRPALRPYLGCLDRCCPGTAVAWAIGVLVVSGAILACTLTIGNSVLKLPHWGSVLLLLLSGGMFLLSLIVLGAYQQQRQQDIFQIPMVPLIPAVSIFLNICLMLKLSILTWLRFFIWLVIGLTVYFGYGMRHSKENQRELPGLTITRYVVFPSGSSLEETVQAVQPPSQAPAQESGHLEQPSSP", "length": 635, "header": "tr|F1RK99-1|F1RK99_PIG Isoform 1 of Solute carrier family 7 member 4 OS=Sus scrofa OX=9823 GN=SLC7A4 PE=4 SV=2 CANONICAL=F1RK99-1" }, "locus": { "chromosome": "14", "start_pos": 50636701, "end_pos": 50634128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011063.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011063.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010775.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010775.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RK99", "url": 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"https://omabrowser.org/oma/group/SIEMLYI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21683", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21683", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21683:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21683:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13863", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13863", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RKB4", "url": "https://www.uniprot.org/uniprotkb/F1RKB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RKB4-1", "url": "https://www.uniprot.org/uniprotkb/F1RKB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIPWEEYFRLTSQEKLPLKILEQNVDHIPPVLRLLEKKQELVDADQGLQAQKEVFQTRRASLKQRWEQLEQKEQELKGSFVRFEKFLQDAEARRSRALRRAAEERHLAGHQEAEALRRRAQLEELQRERARLQRRLQRLEPCARLLGQVLEQLPEFQEVPELVARFDGLADMQEALRITERQRLAELEEARARLQRLRDAWQDELLQQGQRRVQLLQQLEAARERTLHWESKWIQIQNTAAEQTLLLGRTRMAALNLFQLVCQHQRRPPFLDIEDTEGQLEQVKLFILDLSALLASLRQAEPTAPAS", "length": 308, "header": "tr|F1RKB4-1|F1RKB4_PIG Isoform 1 of Cilia and flagella associated protein 73 OS=Sus scrofa OX=9823 GN=CFAP73 PE=4 SV=1 CANONICAL=F1RKB4-1" }, "isoforms": [ { "isoform_ac": "F1RKB4-1", "url": "https://www.uniprot.org/uniprotkb/F1RKB4/entry", "sequence": { "sequence": "MAIPWEEYFRLTSQEKLPLKILEQNVDHIPPVLRLLEKKQELVDADQGLQAQKEVFQTRRASLKQRWEQLEQKEQELKGSFVRFEKFLQDAEARRSRALRRAAEERHLAGHQEAEALRRRAQLEELQRERARLQRRLQRLEPCARLLGQVLEQLPEFQEVPELVARFDGLADMQEALRITERQRLAELEEARARLQRLRDAWQDELLQQGQRRVQLLQQLEAARERTLHWESKWIQIQNTAAEQTLLLGRTRMAALNLFQLVCQHQRRPPFLDIEDTEGQLEQVKLFILDLSALLASLRQAEPTAPAS", "length": 308, "header": "tr|F1RKB4-1|F1RKB4_PIG Isoform 1 of Cilia and flagella associated protein 73 OS=Sus scrofa OX=9823 GN=CFAP73 PE=4 SV=1 CANONICAL=F1RKB4-1" }, "locus": { "chromosome": "14", "start_pos": 38649829, "end_pos": 38643123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010823.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010823.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010540.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010540.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RKB4", "url": "https://www.uniprot.org/uniprotkb/F1RKB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZFM5-1", "protein_name": "Cilia and flagella associated protein 73", "gene_name": "CFAP73", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPRPAPPLPPRAAQDPDSAPEMSLGLEEHLSRAFQDKLRLQMVPAWDSASLLPSRRLLLKRREVVEVERALQAQREDFQQRMEHLAQRRQQLGQREEQLRDDTIKFNAFLKAMSARRQRAQQRAGEERARAAQRGAEALRLQQELERLQRRRERLGQRLQSLRVFGDFLQDVRAATGQFQDVPSMLAHFGALVEGRAVLLQQVEARQAALAQGRAQLQQCCEEADSELTSSNEEALQLHARLEAARSDVLKGETHWAQLQGAAAQTTLLLGQIRMAVLSLFQLTSMRLEVPKDVALEDTEAQLDVVSVTQQLWGWEGRGCPSDTEAPVSPAAALHAGPGCHLCRAGAVFSCACYHCHTPTASQSCHCASQPGIDGLRIQWSTKVTQHVQGRMKGNAPVQSLGHRCPPARHMDGQK", "length": 417 }, "evidence": [ { "id": "F1RKB4", "url": "https://omabrowser.org/oma/group/F1RKB4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6NFT4-1", "protein_name": "Cilia- and flagella-associated protein 73", "gene_name": "CFAP73", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVPWEEYFRLALQEKLSTKLPEQAEDHVPPVLRLLEKRQELVDADQALQAQKEVFRTKTAALKQRWEQLEQKERELKGSFIRFDKFLQDSEARRNRALRRAAEERHQAGRREVEALRLWTQLQELRREHARLQRRLKRLEPCARLLEQALELLPGFQEVPELVARFDGLAETQAALRLREREQLAELEAARARLQQLRDAWPDEVLAQGQRRAQLQERLEAARERTLQWESKWIQIQNTAAEKTLLLGRSRMAVLNLFQLVCQHQGQPPTLDIEDTEGQLEHVKLFMQDLSAMLAGLGQAEPAAPAS", "length": 308 }, "evidence": [ { "id": "F1RKB4", "url": "https://omabrowser.org/oma/group/F1RKB4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1MSJ1-1", "protein_name": "Cilia and flagella associated protein 73", "gene_name": "CFAP73", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVPWEEYFQLVLEEKLSTKIPEQNMDHVPPVLRLLEKRQELMDADRGLQAQKEVFETTKASLKQRWEQLEQKEQELKGSFIRFEKFLQDAEARRSRALRRAEEERHLAGRREAEALRLRAQLAELQRERARLQRGLQRLEPCARLLGQMLELLPEFQEVPELVARFDGLADMQAALRLTERQRLAELEEARARLQRLRDSWQDELLLQGQRRAHLLERLESARERTLHWVPRPEEESKWIQIQNTAAEKTLLLGRTRMAVLNMYHLVCQHQRRPPALDVEDTEGQLEQVKLSILDLSAMLAGLREAESAAPTS", "length": 314 }, "evidence": [ { "id": "F1RKB4", "url": "https://omabrowser.org/oma/group/F1RKB4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "J3QPZ5-1", "protein_name": "Cilia- and flagella-associated protein 73", "gene_name": "Cfap73", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVTWEEYFRLVFSEKVQPKPLEQTGDDSSVLQLILEKKEELAVADLGLQAQKKEYRSTIESVNQRWRELEQKGQELQGSVISYDKFLKEVEARRAARKAIEERKITGNLDAELRRLRTQLKELRLQRARLQRKVQRLEPCARILKRALEKRPVFEEVSDLVARFETLVSTKAALKLEEQKRLVEMESTRAQLLSLQSEKQDEMLNLNQQRTQLVEQLEAAREHRQQWESKWTEILNSASEKTLLLGRARMAVLNLYHLVRLQQGRRQTLDVRDVEGQLEEVKRFIMNISATLAKLALAQPTATAS", "length": 306 }, "evidence": [ { "id": "F1RKB4", "url": "https://omabrowser.org/oma/group/F1RKB4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VIY1-1", "protein_name": "DUF4200 domain-containing protein", "gene_name": "Dmel\\CG10750", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPRRKPTIKTDVIGDLDLSPEVAIDDYRVSRQQDQFFVKPPNWDSAGDNIEMLYIANLREYDAMKQVQIQLLKDAKRQAALNVQRIRKMYKIQERLRKRFVEVNGFIKDCADKKRSADKSIREETVLHAEVTKEIDEFKTSIAELSTFRNALKATVAQFQPYERVLEEVVEVSDIFISTKDCIDRCDALMLAQVEINKLESQKLNEIEEMRLRMVQITSEAALTVLGLKNDLARLDRSYVSSRATCLKWEKILSACKDTTSLYNLDKERMFDGIQILYRMLCKRRDIVPSYHSYEIDKIMSFIMREISLLSSVLQELESNKGDKVGAGRMC", "length": 331 }, "evidence": [ { "id": "F1RKB4", "url": "https://omabrowser.org/oma/group/F1RKB4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RKB4", "url": "https://www.uniprot.org/uniprotkb/F1RKB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { 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"length": 1122, "header": "tr|F1RKJ0-1|F1RKJ0_PIG Isoform 1 of Cation channel sperm associated auxiliary subunit gamma OS=Sus scrofa OX=9823 GN=CATSPERG PE=4 SV=5 CANONICAL=F1RKJ0-1" }, "isoforms": [ { "isoform_ac": "A0A287AQR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQR9/entry", "sequence": { "sequence": 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"length": 1082, "header": "tr|A0A287AQR9-1|A0A287AQR9_PIG Computationally mapped isoform of Cation channel sperm associated auxiliary subunit gamma OS=Sus scrofa OX=9823 GN=CATSPERG PE=4 SV=3 CANONICAL=F1RKJ0-1" }, "locus": { "chromosome": "6", "start_pos": 47282604, "end_pos": 47253293, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041875.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041875.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046251.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046251.3" } ] } }, { "isoform_ac": "F1RKJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0/entry", "sequence": { "sequence": "AHCPNMSPAGPAWPRLRVLRALWALLVVLLAPWRLWAIKDTLECTWQVVLNNFETVGKNHASDRFFNQEPLDTVDEVFSLLVDAPIDPDERYLGFPYFLKINYSCRGESSEALVRKGHLTGLKPVVLVTFQSPVNFHHWKIEQLQIQMEAAPFRSREWCNAEELCIMSWYMPMPIKNGSVVMRVDVSSNGLGPFIPNKRFQVNINGFLERQRDNSLQFTVGNELFDLIPRYFVNVPSRPLWYTVDQAPVLILGGIPEEKAILLTDTNFEDFFLVELSIDSCWVGSFYCPQANFTATIYDAIATESTLFIRQNQLIYYFTGTYTTLHETNHGSGRWVRILANECVKKLCPVHFHSNGSEYVMALTTGKHEGYVHFGTITDGRVSFELLPRQQSVCNGIRVVNCSITWAVFIAGDYDLLLLVEIEEPASRKYFLVVSYNLVSDYLVILYTIPEFIPDARGLEFLMILGTESYTNVPMVPKGMSYNEYNNLLFIWGNFLLQIWYLLEGSYQVYKLFPSKGWELYLSLQLMQQSSLYAPNETMITLFYDDSKLYQLVYLIDKQQGRLVKRLVPVEQLLMYQQLGNHYLLEQQGSHLTLSFANFCPFTVMRLLDLPNPQIYTRQERYRAQPPRILEPSGFHNNNSLAVYQGLVYYLLWLHSMYDKPYADPVHDPTWRWWKNKKQDQDYYFYLASNWQSAGNVHIDMASYEKIYDLKAENELPERIFLDKGTIYSFSVFLTARGHAFLGASSQPGSQVGLAVVLADPACIEAVVKQKDLINRNSVLFWVTLSDKRTCFDQGISGHHLMKTSMLIKVVGSSGHCFQNTHQGPRMQGNLMVPLLIGCPPGKRLAFDITYTLEYNRLQNKHYFDCVHVDPEMPCFLFRDIFYPFFLIQDLVTGDSGSFQGSYVLKVVGGGPTLDTIKDYSEEDIYRFNSPLDKTGSLIWTTRNSTTTEDSAFNIMSHHSLGIEWLCLENSPCHDTIPHSIFAPEFFFKVLVSNRGVDKSTYCDYQLTFLLHIHGLPLSAKRAFLILMVSTSVFVGLVSLYIIFCLLLPFMVKTCNFFRWKINNIMASESSYIYSIPSNTRAFNKTSLTKSGSSSRGSSNILSKRVAESKAEAEETTGKWQT", "length": 1122, "header": "tr|F1RKJ0-1|F1RKJ0_PIG Isoform 1 of Cation channel sperm associated auxiliary subunit gamma OS=Sus scrofa OX=9823 GN=CATSPERG PE=4 SV=5 CANONICAL=F1RKJ0-1" }, "locus": { "chromosome": "6", "start_pos": 47282604, "end_pos": 47253293, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003278.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003278.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003196.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003196.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RKJ0", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1300642", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300642", "resource": "Reactome", "description": "Sperm Motility And Taxes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "F1RKJ0", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "F1RKJ0", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "F1RKJ0", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1084, "end_pos": 1086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 536, "end_pos": 538, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 944, "end_pos": 946, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RKJ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1122, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RKJ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RKJ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RKJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" }, { "id": "PF22846", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22846" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG C-terminal", "eco_id": "ECO_0000259", "start_pos": 862, "end_pos": 1063, "start_aa": "His", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RKJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" }, { "id": "PF22851", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22851" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG Ig-like", "eco_id": "ECO_0000259", "start_pos": 715, "end_pos": 836, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RKJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" }, { "id": "PF22840", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG N-terminal", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 203, "start_aa": "Cys", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RKJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ0" }, { "id": "PF15064", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15064" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CATSPERG beta-propeller", "eco_id": "ECO_0000259", "start_pos": 207, "end_pos": 498, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 1084, "end_pos": 1086 }, { "start_pos": 177, "end_pos": 179 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RKJ3-1", "uniprot_ac": "F1RKJ3", "uniprot_id": "F1RKJ3_PIG", "mass": { "chemical_mass": 10958.0, "monoisotopic_mass": 10958.0 }, "refseq": { "ac": "XP_003127155", "name": "immortalization up-regulated protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127155" }, "gene_names": [ { "name": "C6H19orf33", "type": "recommended", "evidence": [ { "id": "F1RKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ3" } ] }, { "name": "C6H19orf33", "type": "synonym", "evidence": [ { "id": "XP_003127155", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127155" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1RKJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKJ3/entry#names_and_taxonomy" } ] }, { "name": "immortalization up-regulated protein", "type": "synonym", "evidence": [ { "id": "XP_003127155", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127155" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKJ3", "url": "https://www.uniprot.org/uniprotkb/F1RKJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C6H19orf33", "url": "https://www.uniprot.org/uniprotkb/F1RKJ3", "locus": {} } ], "crossref": [ { 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1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=C6H19orf33 PE=4 SV=2 CANONICAL=F1RKJ3-1" }, "locus": { "chromosome": "6", "start_pos": 47224185, "end_pos": 47223495, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098738.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098738.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075363.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075363.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RKL1-1", "uniprot_ac": "F1RKL1", "uniprot_id": "F1RKL1_PIG", "mass": { "chemical_mass": 119261.0, "monoisotopic_mass": 119261.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "WD repeat domain 87", "type": "recommended", "evidence": [ { "id": "F1RKL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RKL1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RKL1", "url": "https://www.uniprot.org/uniprotkb/F1RKL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RKL1", "locus": {} } ], "crossref": [ { "id": "F1RKL1", "url": 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"https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036250", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036250", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "AIAMIKI", "url": "https://omabrowser.org/oma/group/AIAMIKI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47829", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47829", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47829:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47829:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00441", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00441", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00702", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00702", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01636", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01636", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02770", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02770", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-77289", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A1Y0", "url": "https://www.uniprot.org/uniprotkb/A0A287A1Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AET3", "url": "https://www.uniprot.org/uniprotkb/A0A287AET3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AET3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AET3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFL8", "url": "https://www.uniprot.org/uniprotkb/A0A287AFL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6K7", "url": "https://www.uniprot.org/uniprotkb/A0A287B6K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6K7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6W9", "url": "https://www.uniprot.org/uniprotkb/A0A287B6W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6W9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEX2", "url": "https://www.uniprot.org/uniprotkb/A0A287BEX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL48", "url": "https://www.uniprot.org/uniprotkb/F1RL48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL48-1", "url": "https://www.uniprot.org/uniprotkb/F1RL48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LK34", "url": "https://www.uniprot.org/uniprotkb/I3LK34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LK34-1", "url": "https://www.uniprot.org/uniprotkb/I3LK34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKEKAKAEGLWNLFLPIETDPERKYGAGLTNVEYAHLCELMGTSLYAPEIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 1036, "header": "tr|F1RL48-1|F1RL48_PIG Isoform 1 of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=4 CANONICAL=F1RL48-1" }, "isoforms": [ { "isoform_ac": "A0A287A1Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1Y0/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLCEDSRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKEKAKAEGLWNLFLPIETDPERKYGAGLTNVEYAHLCELMGTSLYAPEIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 902, "header": "tr|A0A287A1Y0-1|A0A287A1Y0_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=1 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059880.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059880.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037937.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037937.1" } ] } }, { "isoform_ac": "A0A287AET3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AET3/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLCEDSRGQDHWDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 956, "header": "tr|A0A287AET3-1|A0A287AET3_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=3 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058420.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058420.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042348.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042348.3" } ] } }, { "isoform_ac": "A0A287AFL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFL8/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLWDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 947, "header": "tr|A0A287AFL8-1|A0A287AFL8_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=3 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060877.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060877.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042634.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042634.3" } ] } }, { "isoform_ac": "A0A287B6K7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6K7/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLCEDSRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKEKAKAEGLWNLFLPIETDPERKYGAGLTNVEYAHLCELMGTSLYAPEAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 872, "header": "tr|A0A287B6K7-1|A0A287B6K7_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=1 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049719.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049719.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051937.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051937.1" } ] } }, { "isoform_ac": "A0A287B6W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6W9/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLCEDSRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKEKAKAEGLWNLFLPIETDPERKYGAGLTNVEYAHLCELMGTSLYAPEIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGKVPCGLREAPGRAGHDSGRHRPVPCGD", "length": 909, "header": "tr|A0A287B6W9-1|A0A287B6W9_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=1 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32888497, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053518.1", "url": "https://www.ensembl.org/id/ENSSSCT00000053518.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051854.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051854.1" } ] } }, { "isoform_ac": "A0A287BEX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEX2/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLCEDSRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKEKAKAEGLWNLFLPIETDPERKYGAGLTNVEYAHLCELMGTSLYAPEIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 1006, "header": "tr|A0A287BEX2-1|A0A287BEX2_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=1 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046116.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046116.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054629.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054629.1" } ] } }, { "isoform_ac": "F1RL48-1", "url": "https://www.uniprot.org/uniprotkb/F1RL48/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKEKAKAEGLWNLFLPIETDPERKYGAGLTNVEYAHLCELMGTSLYAPEIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 1036, "header": "tr|F1RL48-1|F1RL48_PIG Isoform 1 of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=4 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010780.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010780.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010500.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010500.4" } ] } }, { "isoform_ac": "I3LK34-1", "url": "https://www.uniprot.org/uniprotkb/I3LK34/entry", "sequence": { "sequence": "MCIRWLLGSSQLQRAWRAASLKHLPYGHQGTRRWRHSGGSTYRAVIFDMGGVLIPSPGKMAAEWEVRNHIPSGTVLKALSSGGENGPWMKFMRAEITIEDFLQEFRKLCSEISKTDMSVDFFSFLLTNEQVVKQFPVMTEAITQIRAKGLQTALLSNNFFLPNGKSFLPLDRKQFDVVVESCLEGICKPDPRIYKLCLERLGRKPSECILLEDLGPNLKAAASLGIHTIKVNDPETAVKELKTLLGFTLRTVVPNTRPVRKTMEIPKDSLEKYLRDLLGIQTTGPLELLQFDHGQSNPTYYIKLANQQMVLRKKPPGTLLPSAHAVEREFRIMKALKNAGVPVPKVLDLCEDSRIVGTPFYVMEYCSGLTYKDPSLPGLEPSQRQAIYTAMNRVLCKIHSVDLKATGLEDYGKHGDYITRQVQTWIKQYRATETSTIPAMERLIEWLPLHLPSQQRTTVVHGDFRLDNLLFHPETNEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPIQPGLGDCDLTKLGIPTAEEYFRMYCLHMGIPPTENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAEQSGKLTEFMSNLAWDFAVKEGFRVFKEMPPTKPLTRSHHTWARPQFLPRTLGRRSYVTSTDSSPAHASKGALVFSPEGLSPPVREVYQRLKQFIERHVYPAEPELQSHQASAERWTPSPLVEDLKIFNCSAPDTGNMEVLVRYGTEEQKARWLTPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWISGILDPRCQLCVFMGKTDPHAPRHQQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEKVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARAKSRVAFGKPLVEQGTILADIAQSRVEIEQARLLVLKAAHVMDVAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSNDFPLAQFFAGARALRFADGPDEVHRAAVAKMELKHGL", "length": 1012, "header": "tr|I3LK34-1|F1RL48_PIG Computationally mapped isoform of Acyl-CoA dehydrogenase family member 10 OS=Sus scrofa OX=9823 GN=ACAD10 PE=1 SV=2 CANONICAL=F1RL48-1" }, "locus": { "chromosome": "14", "start_pos": 32890335, "end_pos": 32847332, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028125.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028125.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024448.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024448.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LK34", "url": "https://www.uniprot.org/uniprotkb/I3LK34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-77289", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77289", "resource": "Reactome", "description": "Mitochondrial Fatty Acid Beta-Oxidation" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BGS2-1", "protein_name": "Acyl-CoA dehydrogenase family member 10", "gene_name": "LOC511425", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCLRQLLQSSQLQRAWRAAFLKHVQGRHPGAWRWTHSGGGPYRAVIFDMGGVLLPSPGRVAAEWEVQNHIPSGTIVKALISGGENGPWMKFMRAEITTEDFLQEFGRLCSEISKTSVPVDSFFSLLTSERVAKQFPVMTEAITQIRAKGLQTAVLSNNFYLPNGKSFLPLDRKQFDVVVESCLEGVCKPDPRMYKLCLERLGRQPSESIFLDDLGPNLKAAAGLGIHTIKVDDPETAVKELETLLGFPLRMAVPNTRPVRKTMEIPKDALEKYLKDLLGIQPTGPLELLQFDHGQSNPTYYVKLANHQLVLRKKPPGTLLPSAHAVEREFRIMKALGNAGVPVPKVLDLCEDSSVVGTPFYLMEYCPGRIYKDPSLPGLEPSQRRAIYTAMNRVLCKIHSVDLKAAGLEDYGKHGDYLARQVQTWIKQYRASETSTIPAMERLIEWLPLHLPRQQRTTVVHGDFRLDNLLFHPETAEVLAVLDWELSTLGDPLADVAYNCLAHYLPSGFPIQPGLSDCDLTELGIPTAEDYFRMYCLHMGIPPIENWNFYMAFSFFRIAAILQGVYKRSLTGQASSATAKQTGKLTEFMSNLAWDFAIKEGFQIFKEMPATKPLMRSHHTWSLLRTPGTRSYVTSTDSSPAHASKGALIFSPEGLPHRVRELYQKLKEFMERHVYPAEPELQRHQVSAERWTPSPLVEDLKEKAKAEGLWNLFLPLETDPEKKYGAGLTNMEYAHLCEVMGTSLYAPEIFNCSAPDTGNMELLVRYGTEEQKARWLIPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWITGILDPRCQLCVFMGKTDPHAPRHQQQSILLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEQVCVPKENIILGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARVKSRVAFGKPLVEQGTVLADIALSRVEIEQARLLVLKAAHVMDVVGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSSNYPLAQFFAGARALRFADGPDEVHRAAVAKMELKHHS", "length": 1055 }, "evidence": [ { "id": "F1RL48", "url": "https://omabrowser.org/oma/group/F1RL48/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H290-1", "protein_name": "Acyl-CoA dehydrogenase family member 10", "gene_name": "Acad10", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSIRKLFQMSALQWAWRTAAMKSTPGRQQGALRWTRSGGHSYRAVIFDMGGVLMPSPGTVAAEWEVQNRIPSGTIMKAFVRDGDSGPWMRFLRGERTTEGFLEEFGKLCSEIAKTSVPVNSFFSLITSEQLTKQFPVMTQAISQIRARGLQTAILTNNFYLSNGKSFLPLDRKQFDVVVESCLEGISKPDPRIYQLCLQRLGLQPSEAIFLDDLGSNLKAAASLGIHTIKVDHPETAVKELEALLGFPLCVGVPNTGPVRKTMEIAEDALEKYLKGLLGTHDTGPMELLQFDHGQSNPTYYIRLADRQLVLRKKPPGTLLPSAHAIEREFRIMKALRNAGVPVPTVLDLCEDSSIIGTPFYLMEYCPGIIYKDPSLPGLEPSRRRAIYTAMSQVLCRIHSVDLQATGLDSFGKQGDYIPRQVQTWTKQYRAAETSSIPAMERLIQWLPLHLPRQQRTTVVHGDFRLDNLIFHPEKSEVLAVLDWELSTLGDPFADVAYSCLAHYLPSDFPMLRGFRDQDVTQLGIPTVEEYFRTYCLHMGIPPVDNWNFYMAFSFFRVAAILQGVYKRSLTGQASSATAKQSGKLTEFMAELAWDFAIKEGFRVFKEMPATKPQVRSYHAWAGLRPQWTLAGLRSYSTVAAASPPQETKGGLIISPEGLSPRVRKLYDRLLQFMEQNVYPLEPELQRHQASADRWSPSPLIEDLKEKAKAEGLWNLFLPLETDPEKKYGAGLTNMEYAHLCEVMGMSLYASEVFNCSAPDTGNMELLVRYGTEEQKARWLVPLLEGRIRSCFAMTEPQVASSDASNIEASIKEEDGSYVINGHKWWISGILDPRCKLCVFMGKTDPQAPRHQQQSMVLVPMDTPGISVIRPLSVYGLEDAPGGHGEVWFKDVRVPKENIVLGPGRGFEIAQGRLGPGRIHHCMRLIGFSERALALMKTRVMSRTAFGKPLVEHGTILADIARSRVDIEQARLLVLKAAHLMDVTGNKAAALEIAMIKMVAPSMAYQVIDRAIQAFGAAGLGSDYPLAQFFAWARALRFADGPDEVHRLTVAKMELKNPSRLQEPAVPRV", "length": 1069 }, "evidence": [ { "id": "F1RL48", "url": "https://omabrowser.org/oma/group/F1RL48/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6JQN1-1", "protein_name": "Acyl-CoA dehydrogenase family member 10", "gene_name": "ACAD10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCVRSCFQSPRLQWVWRTAFLKHTQRRHQGSHRWTHLGGSTYRAVIFDMGGVLIPSPGRVAAEWEVQNRIPSGTILKALMEGGENGPWMRFMRAEITAEGFLREFGRLCSEMLKTSVPVDSFFSLLTSERVAKQFPVMTEAITQIRAKGLQTAVLSNNFYLPNQKSFLPLDRKQFDVIVESCMEGICKPDPRIYKLCLEQLGLQPSESIFLDDLGTNLKEAARLGIHTIKVNDPETAVKELEALLGFTLRVGVPNTRPVKKTMEIPKDSLQKYLKDLLGIQTTGPLELLQFDHGQSNPTYYIRLANRDLVLRKKPPGTLLPSAHAIEREFRIMKALANAGVPVPNVLDLCEDSSVIGTPFYVMEYCPGLIYKDPSLPGLEPSHRRAIYTAMNTVLCKIHSVDLQAVGLEDYGKQGDYIPRQVRTWVKQYRASETSTIPAMERLIEWLPLHLPRQQRTTVVHGDFRLDNLVFHPEEPEVLAVLDWELSTLGDPLADVAYSCLAHYLPSSFPVLRGINDCDLTQLGIPAAEEYFRMYCLQMGLPPTENWNFYMAFSFFRVAAILQGVYKRSLTGQASSTYAEQTGKLTEFVSNLAWDFAVKEGFRVFKEMPFTNPLTRSYHTWARPQSQWCPTGSRSYSSVPEASPAHTSRGGLVISPESLSPPVRELYHRLKHFMEQRVYPAEPELQSHQASAARWSPSPLIEDLKEKAKAEGLWNLFLPLEADPEKKYGAGLTNVEYAHLCELMGTSLYAPEVCNCSAPDTGNMELLVRYGTEAQKARWLIPLLEGKARSCFAMTEPQVASSDATNIEASIREEDSFYVINGHKWWITGILDPRCQLCVFMGKTDPHAPRHRQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVRFEHVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGFSERALALMKARVKSRLAFGKPLVEQGTVLADIAQSRVEIEQARLLVLRAAHLMDLAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSSDYPLAQFFTWARALRFADGPDEVHRATVAKLELKHRI", "length": 1059 }, "evidence": [ { "id": "F1RL48", "url": "https://omabrowser.org/oma/group/F1RL48/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K370-1", "protein_name": "Acyl-CoA dehydrogenase family member 10", "gene_name": "Acad10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLVRRLFQPSTLHWAWRTTALNHPLGRHQGGLRWTHSGGRSYRAVIFDTGGVLVPSPGTVAVGWEVQNHVPSGTIVKAFIRGGDSGPWIRFIKGEITTEHFLEEFGRLCSEIAKTSVPVSSYFSLLTSEQVTKQFPVMTQAISQIRAKGLQTAVLTNNFHLSSGESFLPLDRKQFDVVVESCLEGICKPDPRIFQLCLQRLSLQPSEAIFLDDLGSNLKVAASLGIHTIKVDRPETAVKELEALLGFPLHLGVPNTRPVRKTMAIPQDALEKYLKGLLGTHSTGPMELLQFDHGQSNPTYYIRLADRQLVLRKKPSGTLLPSAHAIEREFRIMKALANAGVPVPTVLDLCEDSSIIGTPFYLMEYCPGIIYKDPSLPGLEPSRREAIYTAMNQVLCRIHSVDLQATSLDSFGKQGDYIPRQVQTWTKQYRAAETSSIPAMERLIQWLPLHLPRQQRTTLVHGDFRLDNLIFHPEKAEVLAVLDWELSTLGDPFADVAYSCLAYYLPSSFPILRGFRDQDVTKLGIPTVEEYFRMYCLNMGIPPIDNWNFYMAFSFFRVAAILQGVYKRSLTGQASSATAQQSGKLTESMAELAWDFATKEGFRVFKEMPATKTLSRSYHAWAGPRSPRTPKGVRGHSTVAAASPSHEAKGGLVISPEGLSPAVRKLYEQLVQFIEQKVYPLEPELQRHQASADRWSPSPLIEDLKEKAKAEGLWNLFLPLETDPEKKYGAGLTNVEYAHLCEVMGMSLYASEIFNCSAPDTGNMEILVRYGTEEQKARWLVPLLEGRIRSCFAMTEPQVASSDASNIEASIKEEDGCYVINGHKWWTSGILDPRCKLCVFMGKTDPQAPRHQQQSMLLVPMDSPGITVIRPLSVFGLEDPPGGHGEVRFKDVRVPKENILLGPGRGFEIAQGRLGPGRIHHCMRLIGYSERALALMKTRVMSRTAFGKPLVEQGTILADIARSRVEIEQARLLVLKAAHLMDVAGNKTAALDIAMIKMVVPSMAYHVIDRAIQAFGAAGLSSDYPLAQFFGWARALRFADGPDEVHQLTVAKMELKNQSRMQEPAVPRV", "length": 1069 }, "evidence": [ { "id": "F1RL48", "url": "https://omabrowser.org/oma/group/F1RL48/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8RWZ3-1", "protein_name": "Probable acyl-CoA dehydrogenase IBR3", "gene_name": "IBR3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGSSTGDLVTRIQSAHRFDHDALFRFAADNVSGFPTNPSQFKVSQFGHGQSNPTFLIEVGSGSSLKRYVLRKKPPGKLLQSAHAVDREFQVLRALGEHTQVPVPKVFCLCTDPAVIGTAFYIMEFMEGRIFIDPKLPNVAPERRNAIYRATAKALASLHSADVDAIGLEKYGRRGNYCKRQIDRWFKQYLASTSEGKPERNPKMFELVDWLRKNIPAEDSTGATSGLVHGDFRIDNLVFHPSEDRVIGIIDWELSTLGNQMCDVAYSCMHYIVNVQLDKEHVSEGFETTGLPEGMLSMPEFLLEYCSASGKPWPAANWKFYVAFSLFRAASIYTGVYSRWLMGNASAGERARNTGVQANELVESALGYIARENVLPEHPPSVQRDVSPSYESLVDGSGRFIPNRKVLELRQKLIKFMETHIYPMENEFSKLAQSDMRWTVHPQEEKLKEMAKREGLWNLFVPVDSAARARRELAATENKHNLSGKSFDQLFGEGLTNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVILRYGNKEQISEWLIPLLEGRIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLILMGKTDFNAPKHKQQSMILVDMRTPGISVKRPLTVFGFDDAPHGHAEISFENVVVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMELMAQRALSRKTFGKFIAQHGSFVSDLAKLRVELEGTRLLVLEAADHLDKFGNKKARGILAMAKVAAPNMALKVLDTAIQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIGKLELQRASKL", "length": 824 }, "evidence": [ { "id": "F1RL48", "url": "https://omabrowser.org/oma/group/F1RL48/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "acyl-CoA dehydrogenase activity", "id": "GO:0003995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003995", "evidence": [ { "database": "UniProtKB", "id": "F1RL48", "url": "https://www.uniprot.org/uniprotkb/F1RL48" } ], "pmid": "" }, { "name": "flavin adenine dinucleotide binding", "id": "GO:0050660", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050660", "evidence": [ { "database": "UniProtKB", "id": "F1RL48", "url": "https://www.uniprot.org/uniprotkb/F1RL48" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-CH group of donors", "id": "GO:0016627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016627", "evidence": [ { "database": "UniProtKB", "id": "F1RL48", "url": "https://www.uniprot.org/uniprotkb/F1RL48" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RL48", "url": "https://www.uniprot.org/uniprotkb/F1RL48" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fatty acid beta-oxidation using acyl-CoA dehydrogenase", "id": "GO:0033539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033539", "evidence": [ { "database": "UniProtKB", "id": "F1RL48", "url": "https://www.uniprot.org/uniprotkb/F1RL48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RL48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1036, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RL48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RL48" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RL48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL48" }, { "id": "PF00441", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00441" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Acyl-CoA dehydrogenase/oxidase C-terminal", "eco_id": "ECO_0000259", "start_pos": 881, "end_pos": 1029, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RL48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL48" }, { "id": "PF02771", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02771" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Acyl-CoA dehydrogenase/oxidase N-terminal", "eco_id": "ECO_0000259", "start_pos": 642, "end_pos": 764, 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"MHIPESLQDLADSEAVQFLKRPKTITRLFAGVFSLIVFSSLLTDGYQNKTNSSQLHCVLNSNRSACSFAVGAGLLAFLSCLAFLALDAHESLLASSRFKTAFQLLDFILAILWAGIWFVGFCFLANQWQHSPSRHFLLGSSSAKAAITFSFFSVPLWIFQAYLALQDLRSDAPVPYKRSLDEGGVVLTSLSPPAAASPGNAAPAGPHGLSYGSAALSPYVSTPKAPRLAMMPDS", "length": 234, "header": "tr|F1RL96-1|F1RL96_PIG Isoform 1 of Synaptogyrin OS=Sus scrofa OX=9823 GN=SYNGR4 PE=3 SV=2 CANONICAL=F1RL96-1" }, "locus": { "chromosome": "6", "start_pos": 53793663, "end_pos": 53785654, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003472.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003472.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003389.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003389.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RL96", "url": "https://www.uniprot.org/uniprotkb/F1RL96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MJB7-1", "protein_name": "Synaptogyrin", "gene_name": "Syngr4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHLPESLQDLADSEAVRFLRRPKSILRICGGVFSLVIFSSLLTDGYQNRTESPQLHCVLNSNYVACSFAVGAGFLSFLSCLVFLALDARESRITGTRFKTAFQLLDFILAVLWAGVWFVAFCFLARQWQHSKFKHFLLGNSSAKAAIAFAFFSVPVWIFQAYLAFQDLRDEAPVPYKRSLDEGGVVLNTLSPSSTTSPANPPTTGPNSVSYTSSALSPYLTASKAPRLAMMPDS", "length": 234 }, "evidence": [ { "id": "F1RL96", "url": "https://omabrowser.org/oma/group/F1RL96/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95473-1", "protein_name": "Synaptogyrin-4", "gene_name": "SYNGR4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHIPKSLQELANSEAVQFLRRPKTITRVFEGVFSLIVFSSLLTDGYQNKMESPQLHCILNSNSVACSFAVGAGFLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVVWFMGFCFLANQWQHSPPKEFLLGSSSAQAAIAFTFFSILVWIFQAYLAFQDLRNDAPVPYKRFLDEGGMVLTTLPLPSANSPVNMPTTGPNSLSYASSALSPCLTAPKSPRLAMMPDN", "length": 234 }, "evidence": [ { "id": "F1RL96", "url": "https://omabrowser.org/oma/group/F1RL96/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1L2-1", "protein_name": "Synaptogyrin-4", "gene_name": "Syngr4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHLPESLHDLADNETVRFLRRPKSISRIFGGVFSLVIFSSLLTDGYQNRTESPQLRCVLNSNHMACSFAVGAGFLSFLSCLVFLAIDAYERRLVGTRFKIAFQLLDFILAVLWAGVWFVAFCFLASQWQHSKSKHFLLGNSSAKAAIALSFFSVPVWILQAYLAFQDLRDEAPVPYKRSLEEGSVVLNTLSPSSTSPSNPPITGPNSLSYTSSALSPYMTTPKAPRLAMMPDS", "length": 233 }, "evidence": [ { "id": "F1RL96", "url": "https://omabrowser.org/oma/group/F1RL96/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "neuromuscular junction", "id": "GO:0031594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031594", "evidence": [ { "database": "UniProtKB", "id": "F1RL96", "url": "https://www.uniprot.org/uniprotkb/F1RL96" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "F1RL96", "url": "https://www.uniprot.org/uniprotkb/F1RL96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RL96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL96" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 169, "start_aa": "Phe", 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RL98-1", "uniprot_ac": "F1RL98", "uniprot_id": "F1RL98_PIG", "mass": { "chemical_mass": 101464.0, "monoisotopic_mass": 101464.0 }, "refseq": {}, "gene_names": [ { "name": "ZSWIM9", "type": "recommended", "evidence": [ { "id": "F1RL98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL98" } ] } ], "protein_names": [ { "name": "Zinc finger SWIM-type containing 9", "type": "synonym", "evidence": [ { "id": "F1RL98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RL98/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RL98", "url": "https://www.uniprot.org/uniprotkb/F1RL98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZSWIM9", "url": "https://www.uniprot.org/uniprotkb/F1RL98", "locus": { "chromosome": "6", "start_pos": 53678043, "end_pos": 53660330, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003129", "url": "https://www.ensembl.org/id/ENSSSCG00000003129" } ] } } ], "crossref": [ { "id": "F1RL98", "url": "https://alphafold.ebi.ac.uk/entry/F1RL98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003129", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003129", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102165016", "url": "https://www.ncbi.nlm.nih.gov/gene/102165016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049218", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049218", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102165016", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RL98", "url": "https://www.orthodb.org/?gene=F1RL98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47086", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47086", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47086:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47086:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17738", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17738", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20784", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20784", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RL98", "url": "https://www.uniprot.org/uniprotkb/F1RL98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL98-1", "url": "https://www.uniprot.org/uniprotkb/F1RL98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPPPGTVAGQEEQELRERAFFSWAEFSRFFDAWCQQRLALFFVKSSMHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSYCKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDRLPGLQGALDLLAVLCVDGAGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPGARVQICRAQGLETLFSKAQELGGAGREDPGLWPRLCRLAGALSPAAYAEALAELRAHGPAAFVDYFERNWAPRRDMWVRFRAFEAARDLDACALVRGHRRRLLRRLSPSRSVAQCLRDLVAMQWADAAGEAAPDVSDDGGTWLEGEPGRGARVENERVKGLETRDWGGAPKEGSVWREAQLEKEWARGLETRDRGGAPAESENGRGLHIRDWRGVQLENQVRGLEGSVWRGSQLEKEHLRGPEIRDWRGGPLEGEKDWGREGYTWRGAPGEDQRSRGSEGFTWRTAHLEEGRIRVLETTGGRGPGFDSEGARSLDGSSWRGAWLHDKKASGLKTREWKGPPSDAEKGRGLEVRNWRGVRMEKPLEWVRENRDHREAPPGEGRLRGPEAREERGVRLGVKRRRDLEDVVLVQLGDTRVTGLENGDGGGAQSGGSQSRGGQGMECGDPVGGCLGLGNGVPCSTPAGTVLEGDPQWAVMRRLYLAAGEGAQEGSGEGPREPKRPRCLSGEDEVDWEPLAKFRAACGPELAELVAEELAFARQHGTRGFHWTGAGFALKDGTSDFFLDGALTRCSCSIHAARRLPCRHLFAARLLTGAALFHVDLLRDCWGRAPEP", "length": 920, "header": "tr|F1RL98-1|F1RL98_PIG Isoform 1 of Zinc finger SWIM-type containing 9 OS=Sus scrofa OX=9823 GN=ZSWIM9 PE=4 SV=4 CANONICAL=F1RL98-1" }, "isoforms": [ { "isoform_ac": "F1RL98-1", "url": "https://www.uniprot.org/uniprotkb/F1RL98/entry", "sequence": { "sequence": 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SWIM-type containing 9 OS=Sus scrofa OX=9823 GN=ZSWIM9 PE=4 SV=4 CANONICAL=F1RL98-1" }, "locus": { "chromosome": "6", "start_pos": 53677792, "end_pos": 53661729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003470.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003470.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003387.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003387.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 264, "start_aa": "Thr", "end_pos": 264, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr264", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], 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"categories": [ "Protein Classification" ] }, { "id": "PTHR13555:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13555:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940340", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940340", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RLC3", "url": "https://www.uniprot.org/uniprotkb/F1RLC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLC3-1", "url": "https://www.uniprot.org/uniprotkb/F1RLC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERGKEKRVSNKLQQCFHHSKEPTFLINQAVLSSDSHSSLLPETEHANPGEKIKTNHQKNRPGTVILSKRSIRRIMSESQPSPPVIPSRRPGFRVCYICGREFGSQSLGIHEPQCLEKWRIENSKLPKHLRRPEPSKPPPLRGSGSYNLQAANEAAFQSSQAQLLPCEYCGRTFLPDRLLVHQRSCKPKGEGPGVTNPSSSDDLAGLKKASGGIPSRPRTFICYICGREFGTLSLPIHEPKCLEKWKIENNRLPRELRRPLPQKPQPPPAGQSNQEGPSQAQLVSCPNCSRTFAPDRLLVHQRSCRAQPSGPKVQDLTSESKGGLKGSPKSKQQRNMAAPSVIDKPTMIRRPPTVVCYICGREYGTKSIAIHEPQCLKKWHNENNLLPKELRRPEPKKPEVRTITAKGFYDLDALNEAAWTSAQSQLVPCYICGRTFLPDRLIVHQRSCKPKVAK", "length": 455, "header": "tr|F1RLC3-1|F1RLC3_PIG Isoform 1 of C2HC/C3H-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100525452 PE=4 SV=4 CANONICAL=F1RLC3-1" }, "isoforms": [ { "isoform_ac": "F1RLC3-1", "url": "https://www.uniprot.org/uniprotkb/F1RLC3/entry", "sequence": { "sequence": "MERGKEKRVSNKLQQCFHHSKEPTFLINQAVLSSDSHSSLLPETEHANPGEKIKTNHQKNRPGTVILSKRSIRRIMSESQPSPPVIPSRRPGFRVCYICGREFGSQSLGIHEPQCLEKWRIENSKLPKHLRRPEPSKPPPLRGSGSYNLQAANEAAFQSSQAQLLPCEYCGRTFLPDRLLVHQRSCKPKGEGPGVTNPSSSDDLAGLKKASGGIPSRPRTFICYICGREFGTLSLPIHEPKCLEKWKIENNRLPRELRRPLPQKPQPPPAGQSNQEGPSQAQLVSCPNCSRTFAPDRLLVHQRSCRAQPSGPKVQDLTSESKGGLKGSPKSKQQRNMAAPSVIDKPTMIRRPPTVVCYICGREYGTKSIAIHEPQCLKKWHNENNLLPKELRRPEPKKPEVRTITAKGFYDLDALNEAAWTSAQSQLVPCYICGRTFLPDRLIVHQRSCKPKVAK", "length": 455, "header": "tr|F1RLC3-1|F1RLC3_PIG Isoform 1 of C2HC/C3H-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100525452 PE=4 SV=4 CANONICAL=F1RLC3-1" }, "locus": { "chromosome": "2", "start_pos": 125719309, "end_pos": 125690687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015551.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015551.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015139.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015139.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RLC3", "url": "https://www.uniprot.org/uniprotkb/F1RLC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525452", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525452", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JYF2-1", "protein_name": "Zinc finger protein 474", "gene_name": "Zfp474", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERGNERISSQPRGTIHHSKELTFFIQHAVPPSGSRSALAQKTQSGGLTKNPKVNIQKRRPGTAILSKHSSRIMSESQPRPPVIPSRRPGFRICYICGREFGSQSLAIHEPQCLEKWRIENSKLPKHLRRPEPSKPQPIGGSDSYNLQAAEEAFQSAQAQLLPCEYCGRTFLPDRLLVHQRSCKSKGENPRTANTNSPDVPTGLKKTSSGIPVRPRTLICYICGREFGTLSLPIHEPKCLEKWKIENDRLPRELRRSLPQKPQPLPTGQPSQKRASQAALVPCPNCGRTFAVHRLPVHQRSCRSQPNGLKLLNLNLERKGGPNGSINSKHQRKMKAPNGDKVTGVI", "length": 346 }, "evidence": [ { "id": "F1RLC3", "url": "https://omabrowser.org/oma/group/F1RLC3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6QQM4-1", "protein_name": "Zinc finger protein 474", "gene_name": "ZNF474", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEREEEKRVSTLQQSFHHSKEPTFLINQAVLFGESHSSFLPEIERDNRGEKIKTNPRKNRPGTVILSKQSSRRIMSGSQPRPPVIPSRRPGFRVCYICGREFGSQSLGIHEPQCLEKWRVENSKLPKHLRRPEPSKPPPFSGSGSYSLQAANEAAFQSSQAQLLPCETCGRTFLPDRLLVHQRSCKQKVEGPRAPSLDRSDDLAGLKKVSSGITTRPRTVICYICGREFGTLSLPIHEPKCLEKWKVENDRLPREFRQPLPQKPQPLLTGQPKHAGPRQGQLVSCPNCSQTFAPDRLPVHQRSCKAQPSGPKVQDLTLGSRGGLKESTNPKPQRNMAAPPVTDKPKMIRRPPTIVCYICGREYGTKSIAIHEPQCLKKWHNENNLLPKELRRPEPKKPEVRTITAKGFYDLDALNEAAWTSAQSQLVPCNICGRTFLPDRLIVHQRSCKPKVAK", "length": 454 }, "evidence": [ { "id": "F1RLC3", "url": "https://omabrowser.org/oma/group/F1RLC3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6S9Z5-1", "protein_name": "Zinc finger protein 474", "gene_name": "ZNF474", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERGKKKRISNKLQQTFHHSKEPTFLINQAGLLSSDSYSSLSPETESVNPGENIKTDTQKKRPGTVILSKLSSRRIISESQLSPPVIPARRPGFRVCYICGREFGSQSIAIHEPQCLQKWHIENSKLPKHLRRPEPSKPQSLSSSGSYSLQATNEAAFQSAQAQLLPCESCGRTFLPDHLLVHHRSCKPKGEGPRAPHSNSSDHLTGLKKACSGTPARPRTVICYICGKEFGTLSLPIHEPKCLEKWKMENDRLPVELHQPLPQKPQPLPNAQSSQAGPNQAQLVFCPHCSRIFTSDRLLVHQRSCKTHPYGPKYQNLNLGSKGGLKEYTNSKQQRNRAAPSVTDKVIHATQDALGEPGGALCL", "length": 364 }, "evidence": [ { "id": "F1RLC3", "url": "https://omabrowser.org/oma/group/F1RLC3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6V5K9-1", "protein_name": "Zinc finger protein 474", "gene_name": "Znf474", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MTQGLVTFRDVAIEFSQEEWKCLEPAQRDLYRDVTLENFGNLVSLGLSISKPDVISLLEQGKDPWMMANDMTGPWCPDWESRCEKFLQKDIFEVESFSWDLMKSLKCHNFEGSGFRDDWEYKGQFAKQQANHECYFKEVKITYGNMPTFEHHPSLTLYSSDETGEKLIDCNECGKAFSRSSHLIQHQKTHTGEKPFECKDCGKAFSRTSHLVQHQRIHTGEKPYDCKECGKAFGRTSELILHQRLHTGVKPYECKECGKTFRQHSQLILHHRTHTGEKPYVCKDCGKAFIRGSQLTVHRRIHTGARPYQCKECGKAFRQHSQLTVHQRIHTGEKPYECKECGKGFIHSSEVTRHQRIHSGEKPYECKECGKAFRQHAQLTRHQRVHTGDRPYECKDCGKAFSRSSYLIQHQRIHTGDKPYECKECGKAFIRVSQLTHHQRIHTCEKPYQCRECGMAFIRSSQLTEHQRIHPGIKPYECRECGQAFILGSQLIEHYRIHTG", "length": 500, "header": "tr|F1RLD5-1|F1RLD5_PIG Isoform 1 of Zinc finger protein 565 OS=Sus scrofa OX=9823 GN=ZNF565 PE=3 SV=3 CANONICAL=F1RLD5-1" }, "isoforms": [ { "isoform_ac": "F1RLD5-1", "url": "https://www.uniprot.org/uniprotkb/F1RLD5/entry", "sequence": { "sequence": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RLS7/entry#names_and_taxonomy" } ] }, { "name": "radial spoke head 14 homolog", "type": "synonym", "evidence": [ { "id": "XP_020927954", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927954" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RLS7", "url": "https://www.uniprot.org/uniprotkb/F1RLS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RSPH14", "url": "https://www.uniprot.org/uniprotkb/F1RLS7", "locus": { "chromosome": "14", "start_pos": 49123935, "end_pos": 49184735, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010047", "url": "https://www.ensembl.org/id/ENSSSCG00000010047" } ] } } ], "crossref": [ { "id": 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"https://www.uniprot.org/uniprotkb/F1RLS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLS7-1", "url": "https://www.uniprot.org/uniprotkb/F1RLS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADARISMYLPPDINPTQAAIAYGCRALPKLNEELQSEDLVTRQKALMALCGLMHDPEHVYMAIHIGCLENLKALLKDTNDMVRIKTTEVLYIMATHNVGRVGFLEHDVIRALSFLLNDPQSLCRENLHLAFKHLAQLPTGAQGIVSSGLIPSLVWKLQREEEGVQELLLDTLAACLMEDATEALASRAVPFLKEKLLSANSNIRSKAAGTLIAISIPLEGKNQVWKHDVIPILVHLLRDKVAEVQANVAGALMNATVTTEGKYAALNAEAIHPLLQLLCSSLSKARLNAIKALTMLAEAPEGRKLLQAHVPTFRALEKDTSAAVKQAAQIAIKVIEWKP", "length": 340, "header": "tr|F1RLS7-1|F1RLS7_PIG Isoform 1 of Radial spoke head 14 homolog OS=Sus scrofa OX=9823 GN=RSPH14 PE=4 SV=3 CANONICAL=F1RLS7-1" }, "isoforms": [ { "isoform_ac": "F1RLS7-1", "url": "https://www.uniprot.org/uniprotkb/F1RLS7/entry", "sequence": { "sequence": "MADARISMYLPPDINPTQAAIAYGCRALPKLNEELQSEDLVTRQKALMALCGLMHDPEHVYMAIHIGCLENLKALLKDTNDMVRIKTTEVLYIMATHNVGRVGFLEHDVIRALSFLLNDPQSLCRENLHLAFKHLAQLPTGAQGIVSSGLIPSLVWKLQREEEGVQELLLDTLAACLMEDATEALASRAVPFLKEKLLSANSNIRSKAAGTLIAISIPLEGKNQVWKHDVIPILVHLLRDKVAEVQANVAGALMNATVTTEGKYAALNAEAIHPLLQLLCSSLSKARLNAIKALTMLAEAPEGRKLLQAHVPTFRALEKDTSAAVKQAAQIAIKVIEWKP", "length": 340, "header": "tr|F1RLS7-1|F1RLS7_PIG Isoform 1 of Radial spoke head 14 homolog OS=Sus scrofa OX=9823 GN=RSPH14 PE=4 SV=3 CANONICAL=F1RLS7-1" }, "locus": { "chromosome": "14", "start_pos": 49183269, "end_pos": 49123996, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011008.3", "url": "https://www.ensembl.org/id/ENSSSCT00000011008.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010720.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010720.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RLS7", "url": "https://www.uniprot.org/uniprotkb/F1RLS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157115", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K0V7-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "Rsph14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRKRSWFTSCSKRLMEALQRSSSCSMSPTERSSMRGGSESGNCALQASAKPTESTMARPAHLRRGAARRSPAQRRRGVLTVPGPGRPAPPMIPRLRRRTMPAPRGRSFYKVSSSKPVGRRGKMAHARISMYMPPDIDPTKAAIAYGCRALRKLNEELQSEDLLTRQKAVMALCDLMHDPEYVYEAINIGCLESLKALLKDDDNLVRIKTTEVLYIMATHNVGRVGFLKHDIILALSRLLSDHQTLCRENLHQAYKHLAQLPEGAQGIVTSGLISFLVRKLQKEELHIQEIILDTLALCLQEDATEALNSQAVPCFKEKLFSGNPQIRSKAARALIAISIPLDGKRQVWQNEVIPILVDLLSDTDEEVKANAAGALMHATVTTEGKYAALDANAIDPLLELLCSIPTTKVCLNATKALTMLAEAPEGRKLLLPRVPTFRYLLTHKNEAIRRAAEVAIKVIEWKP", "length": 463 }, "evidence": [ { "id": "F1RLS7", "url": "https://omabrowser.org/oma/group/F1RLS7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M1P3V2-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "rsph14", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASPQTTEQPPPHIDPTQAPIAFGNLALPKLLVELQDDDLFTRQKALTALCDLLHDPERAYEAIFSECLEILKVLLQDEDSLIRVKTTEVLYVLASHSMGRDAFLNFDIVGPLANLLDDPEIACRKNVHRALNRIAEFPLGAVFMVNKGLVPRLVPKISIEEENIRALVLSTLSCCLSVNALPALESDVIQVLRDQLSHSSPIIRKEAASALMAISVPTVGKIKVCEENLLPILVKLLSDDDQEVVANAAGTIMNTAVITKGKSEALEADALAPLLQLVLSENTAVCANALRALTVLAEVPRARAHLRQHVPLLKTRLTDPNYLIQEAASTTIEVISWQP", "length": 340 }, "evidence": [ { "id": "F1RLS7", "url": "https://omabrowser.org/oma/group/F1RLS7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V1ADH4-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "RSPH14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASTLISAKLPPDVDPTKAPIAFGRRALPKLSREIQSPELLTQQRALMALCDLVHDPENVYQAVQIGFLENLKTLLLHHDSTVRQKTTEILYIMAMHNVGRQGLIQNAVIPVLTELLDDPEDICRKNTHQVLDMMAKLPEGAVDILHAGLIPLLVVRLKTESDEIQELILGTLSNCLRMEASEALATDAITILKEKLTHPSATIRNKAAQVILEIGTHPEGKSTVCEEVIPLLVSLLEDTDPEVQASAAGALMFATIKPKGRCLALRAEAIPRLLKLVAVENSKARLSAIKTLTMLAEVAEGRRKLLERTDIFQQCLRDPSEAVKRAAEIAIRVIRWKPF", "length": 340 }, "evidence": [ { "id": "F1RLS7", "url": "https://omabrowser.org/oma/group/F1RLS7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABI0P4H8-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "RSPH14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADAKISMYLPPNVNPTQAAIAYGCRALPKLNEELQSDDLLTRQKALMALCDLMHDPEHVYTAISIGCLESLKALLKDTNDLVRIKTTEVLCIMATHNVGREGFLEHNVIQALSFLMSDAQPACRENLYTAFKHLAQLPAGALGIVNSGLIPSLVWKLQREEEEIQVLLLDTLAACLTEDATEALASRAVPFLKEKLLSTNCNIRSKAARTLIAVSVPPEGKIQVWQHDVIPILVHLLKDRDEEVQANAAGALMNATVTTEGKYAALDAEATRPLLQLLTSSLSKARLNAIKALTMLAEAPEGRKLLQPHVATFRALEEDFSPAVQRAAQIAIRVIEWKP", "length": 340 }, "evidence": [ { "id": "F1RLS7", "url": "https://omabrowser.org/oma/group/F1RLS7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HMY6-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "Rsph14", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAHARISMYMPPDIDPTKAAIAYGCRALPKLNEELQSEVLLTRQKALVALCDLMHDPEHVYEAIHIGCLESLKVLLKDEDNLVRIKTTEVLHIMATHNIGRTGLLEKGVILALALLLSDHQKVCRENLHQAYKHVAQTPEGARGITSSGLIPWLVNKLNAEEEHIQEIILDTLAPCLQEDATQALESQAVPYFKKKLLNDNPRIRSKAARALIAISIPLEGKNQVWQNGVIPILVDLLSDVDEEVQANAAGALMHATVTTEGKYAALDASAINPLLELLCSSPIKVCLNAAKALTMLAEAPEGRKLLSSHVSTFRVLLMHENEAIRRAAQVAIKVIEWKP", "length": 340 }, "evidence": [ { "id": "F1RLS7", "url": "https://omabrowser.org/oma/group/F1RLS7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9D3W1-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "Rsph14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAHARISMYMPPDIDPTKAAIAYGCRALSKLNEELQSRDLLTRQKALVALCDLMHDPEYVYEAINIGCLESLKTLLQDDDNLVRIKTTEVLYIMATHYVGRVGFLKHDIIQALSLLLSDHQTLCRENLHQAYKHLAQLPKGAQGIVQSGLIPSLVRKLQKEEDHIQEIILDTLALCLQEDATEALESQAVPCLKEKLLSQNSEIRSKAARALIAISIPLDGKNQVWKNKVIPILVTLLSDTDEEVKANAAGALMHATVTTEGKYAALDANAIEPLLELLSTNPKTKLCLNATKALTMLAEAPEGRKLLLSHVPIFRYLLAHKNEAIQRAAEVAIKVIEWKP", "length": 341 }, "evidence": [ { "id": "F1RLS7", "url": "https://omabrowser.org/oma/group/F1RLS7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UHP6-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "RSPH14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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involved as modulators or transducers in various transmembrane signaling systems.", "evidence": [ { "database": "UniProtKB", "id": "F1RLT6", "url": "https://www.uniprot.org/uniprotkb/F1RLT6#function" }, { "database": "UniProtKB", "id": "ARBA00003069", "url": "https://www.uniprot.org/uniprotkb/ARBA00003069#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RLT6", "url": "https://www.uniprot.org/uniprotkb/F1RLT6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GNAZ", "url": "https://www.uniprot.org/uniprotkb/F1RLT6", "locus": { "chromosome": "14", "start_pos": 49174108, "end_pos": 49132013, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010046", "url": "https://www.ensembl.org/id/ENSSSCG00000010046" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010046", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010046", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100151867", "url": "https://www.ncbi.nlm.nih.gov/gene/100151867", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151867", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151867", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANSHWFK", "url": "https://omabrowser.org/oma/group/ANSHWFK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RLT6", "url": "https://www.orthodb.org/?gene=F1RLT6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10218:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10218:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00503", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00503", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418597", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418597", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020927952", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927952", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RLT6", "url": "https://www.uniprot.org/uniprotkb/F1RLT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RLT6-1", "url": "https://www.uniprot.org/uniprotkb/F1RLT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYKPLIIYNAIDSLTRIIRALAALKIDFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWADPGAQACFGRSSEYHLEDNAAYYLNDLERIAAPDYVPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFVSTSLILFLNKKDLLAQKIRRIPLTVCFPEYGGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355, "header": "tr|F1RLT6-1|F1RLT6_PIG Isoform 1 of Guanine nucleotide-binding protein G(z) subunit alpha OS=Sus scrofa OX=9823 GN=GNAZ PE=1 SV=1 CANONICAL=F1RLT6-1" }, "isoforms": [ { "isoform_ac": "F1RLT6-1", "url": "https://www.uniprot.org/uniprotkb/F1RLT6/entry", "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYKPLIIYNAIDSLTRIIRALAALKIDFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWADPGAQACFGRSSEYHLEDNAAYYLNDLERIAAPDYVPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFVSTSLILFLNKKDLLAQKIRRIPLTVCFPEYGGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355, "header": "tr|F1RLT6-1|F1RLT6_PIG Isoform 1 of Guanine nucleotide-binding protein G(z) subunit alpha OS=Sus scrofa OX=9823 GN=GNAZ PE=1 SV=1 CANONICAL=F1RLT6-1" }, "locus": { "chromosome": "14", "start_pos": 49172828, "end_pos": 49150329, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011007.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011007.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010719.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010719.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RLT6", "url": "https://www.uniprot.org/uniprotkb/F1RLT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151867", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151867", "resource": "KEGG Pathway" }, { "id": "R-SSC-418597", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418597", "resource": "Reactome", "description": "G alpha (z) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABI0P4H8-1", "protein_name": "Radial spoke head 14 homolog", "gene_name": "RSPH14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADAKISMYLPPNVNPTQAAIAYGCRALPKLNEELQSDDLLTRQKALMALCDLMHDPEHVYTAISIGCLESLKALLKDTNDLVRIKTTEVLCIMATHNVGREGFLEHNVIQALSFLMSDAQPACRENLYTAFKHLAQLPAGALGIVNSGLIPSLVWKLQREEEEIQVLLLDTLAACLTEDATEALASRAVPFLKEKLLSTNCNIRSKAARTLIAVSVPPEGKIQVWQHDVIPILVHLLKDRDEEVQANAAGALMNATVTTEGKYAALDAEATRPLLQLLTSSLSKARLNAIKALTMLAEAPEGRKLLQPHVATFRALEEDFSPAVQRAAQIAIRVIEWKP", "length": 340 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NZY0-1", "protein_name": "Guanine nucleotide-binding protein G(z) subunit alpha", "gene_name": "GNAZ", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYKPLIIYNAIDSLTRIIRALATLKIEFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMKRLWADPGVQECFCRSNEYHLEDNAAYYLNDLERIAALDYIPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFINTSLILFLNKKDLLAEKIRRIPLTVCFPEYKGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HMY7-1", "protein_name": "Guanine nucleotide-binding protein G(z) subunit alpha", "gene_name": "Gnaz", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLDACKEYKPLIIYNAIDSLTRIIRALAALKIDFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWADPGAQACFGRSSEYHLEDNAAYYLNDLERIAAPDYIPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFINTSLILFLNKKDLLAEKIRRIPLSVCFPEYKGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O70443-1", "protein_name": "Guanine nucleotide-binding protein G(z) subunit alpha", "gene_name": "Gnaz", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLDACKEYKPLIIYNAIDSLTRIIRALAALKIDFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWADPGAQACFGRSSEYHLEDNAAYYLNDLERIAAPDYIPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFINTSLILFLNKKDLLAEKIRRIPLSVCFPEYKGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P19086-1", "protein_name": "Guanine nucleotide-binding protein G(z) subunit alpha", "gene_name": "GNAZ", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYKPLIIYNAIDSLTRIIRALAALRIDFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWADPGAQACFSRSSEYHLEDNAAYYLNDLERIAAADYIPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFINTSLILFLNKKDLLAEKIRRIPLTICFPEYKGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P19627-1", "protein_name": "Guanine nucleotide-binding protein G(z) subunit alpha", "gene_name": "Gnaz", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYKPLIIYNAIDSLTRIIRALAALKIDFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWADPGAQACFGRSSEYHLEDNAAYYLNDLERIAAPDYIPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERKKWIHCFEGVTAIIFCVELSGYDLKLYEDNQTSRMAESLRLFDSICNNNWFINTSLILFLNKKDLLSEKIRRIPLSVCFPEYKGQNTYEEAAVYIQRQFEDLNRNKETKEIYSHFTCATDTSNIQFVFDAVTDVIIQNNLKYIGLC", "length": 355 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P34042-1", "protein_name": "Guanine nucleotide-binding protein alpha-4 subunit", "gene_name": "gpaD", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRFKCFGSEETEQSSKIDKSIETDRRKLRKDVKLLLLGPGESGKSTIFKQMKIIQEDGGYSVEELLEYRAFVYSNCISQMEALLTASAKLNIELEVENKQRAANVLRRTIGNEPWLLLAADIKHLWEDKGIKETYAQKDKHFQLNDSAAYFFDNIDRYMREDFVPNEQDVLRCRVRTTGIQESEFTFDKIRLKIVDVGGQRSQRRKWIHCFDCVTAVIFVAAMSDYDQVLREDESVNRTRESLALFKEIVNCDYFKETPIVLFLNKKDLFKEKLKRVPLQSCFSDYTGPNKYKDAAMFIQSQYLAQGPSPRTIYTHATCAVDTENIKFVFRAVRQTILSQALEHF", "length": 345 }, "evidence": [ { "id": "F1RLT6", "url": "https://omabrowser.org/oma/group/F1RLT6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1RLT6", "url": "https://www.uniprot.org/uniprotkb/F1RLT6" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": 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"MASTLSPSTVTKTPGPPEISERIQNAADISVIVIYFVVVMAVGLWAMLRTNRGTVGGFFLAGRDVTWWPMGASLFASNIGSGHFVGLAGTGAASGIAIAAFEWNALLLLLVLGWFFVPIYIKAGVMTMPEYLRKRFGGKRLQIYLSILSLFICVALRISSDIFSGAIFIKLALGLDLYLAIFSLLAITAIYTITGGLASVIYTDTLQTIIMLIGSFILMGFAFVEVGGYESFTEKYMNAIPTIVEGDNLTISPKCYTPQGDSFHIFRDAVTGDIPWPGMIFGMTVVAAWYWCTDQVIVQRCLSGKDMSHVKAACIMCGYLKLLPMFLMVMPGISRILYTEKVACVVPSECVKHCGTEVGCSNYAYPLLVMELMPSGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDLYTKIRKQASEKELLIAGRLFIILLIVISIVWVPLVQVAQNGQLFHYIESISSYLGPPIAAVFLLAIFCKRVNEQGAFWGLIIGFVMGLIRMIAEFVYGTGSCLAASNCPQIICGVHYLYFALILFFVSILVVLAISLLTKPIPDVHLYRLCWALRNSTEERIDLDAEEKRHEEAHDGVDEDNPEETRGCLRKAYDLFCGLQRKGPKLSKEEEEAQKRKLTDISEKPLWKTIVNINAILLLAVAVFVHGYFA", "length": 659, "header": "tr|F1RLU7-1|F1RLU7_PIG Isoform 1 of Solute carrier family 5 member 4 OS=Sus scrofa OX=9823 GN=SLC5A4 PE=3 SV=3 CANONICAL=F1RLU7-1" }, "isoforms": [ { "isoform_ac": "F1RLU7-1", "url": "https://www.uniprot.org/uniprotkb/F1RLU7/entry", "sequence": { "sequence": "MASTLSPSTVTKTPGPPEISERIQNAADISVIVIYFVVVMAVGLWAMLRTNRGTVGGFFLAGRDVTWWPMGASLFASNIGSGHFVGLAGTGAASGIAIAAFEWNALLLLLVLGWFFVPIYIKAGVMTMPEYLRKRFGGKRLQIYLSILSLFICVALRISSDIFSGAIFIKLALGLDLYLAIFSLLAITAIYTITGGLASVIYTDTLQTIIMLIGSFILMGFAFVEVGGYESFTEKYMNAIPTIVEGDNLTISPKCYTPQGDSFHIFRDAVTGDIPWPGMIFGMTVVAAWYWCTDQVIVQRCLSGKDMSHVKAACIMCGYLKLLPMFLMVMPGISRILYTEKVACVVPSECVKHCGTEVGCSNYAYPLLVMELMPSGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDLYTKIRKQASEKELLIAGRLFIILLIVISIVWVPLVQVAQNGQLFHYIESISSYLGPPIAAVFLLAIFCKRVNEQGAFWGLIIGFVMGLIRMIAEFVYGTGSCLAASNCPQIICGVHYLYFALILFFVSILVVLAISLLTKPIPDVHLYRLCWALRNSTEERIDLDAEEKRHEEAHDGVDEDNPEETRGCLRKAYDLFCGLQRKGPKLSKEEEEAQKRKLTDISEKPLWKTIVNINAILLLAVAVFVHGYFA", "length": 659, "header": "tr|F1RLU7-1|F1RLU7_PIG Isoform 1 of Solute carrier family 5 member 4 OS=Sus scrofa OX=9823 GN=SLC5A4 PE=3 SV=3 CANONICAL=F1RLU7-1" }, "locus": { "chromosome": "14", "start_pos": 48741432, "end_pos": 48708095, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010997.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010997.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010710.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010710.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RLU7", "url": "https://www.uniprot.org/uniprotkb/F1RLU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-189200", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189200", "resource": "Reactome", "description": "Cellular hexose transport" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZIS0-1", "protein_name": "Solute carrier family 5 member 4", "gene_name": "Slc5a4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPAMGTALPRAMASTASVSTSTGSSELSSLSDNINNPADISVIVIYFVVVMAVGVWAMVKTNRSTVGGFFLAGRSMTWWPMGASLFASNIGSGHFVGLAGTGAATGIAVTAFESHSFALLLVLGWFFVPIYIKAGVMTMPEYLRKRFGGKRLQIYLSVLSLFICVILTISADIFSGAIFIKLALGLDLYLAIFILLAITAVFTITGGLASVIYTDTLQAIIMLVGSFILMIYAFVEVGGYESFTEKYMNAIPSVVEGDNLTISPKCYTPQPDSFHIFRDAVTGDIPWPGTAFGMPITALWYWCINQVIVQRCLCGKNMSHVKAACIVCGYLKLLPIFFMVMPGMISRILYTDMVACVVPSECVKQCGVDVGCTNYAYPMLVLKLMPMGLRGLMLSVMLASLMSSLTSIFNSASTLFTMDLYTKIRKKASERELLIAGRLFVSVLIVTSILWVPIVEVSQGGQLIHYTEAISSYLGPPIAAVFLVAIFCKRVNEQGAFWGLMVGLVLGLIRMIAEFSYGTGSCLAPSSCPKVICGVHYLYYAIILFFVSILVILGVSYLTKPIPDVHLYRLCWSLRNSEEERIDLDAEDREENEADARTEEDQTEKPRGCLKKTYDLCCGLQRAEPKLTKEEEEALKKKLTDTSEKPFWRTVVNVNVIVLLAVAAFFYGYFA", "length": 671 }, "evidence": [ { "id": "F1RLU7", "url": "https://omabrowser.org/oma/group/F1RLU7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ET37-1", "protein_name": "Solute carrier family 5 member 4A", "gene_name": "Slc5a4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTASVSTSTASSELSSLSNNINNAADISVIVIYFVVVMAVGVWAMLKTNRSTVGGFFLAGRSMTWWPMGASLFASNIGSGHFVGLAGTGAASGIAVTAFESHSFALLLVLGWIFVPIYIKAGVMTMPEYLKKRFGGKRLQIYLSILFLFICVILTISADIFSGAIFIKLALGLNLYLAILILLAITAIFTITGGLASVIYTDTVQAVIMLVGSFILMVFAFVEVGGYESFTEKFMNAIPSVVEGDNLTINSRCYTPQPDSFHIFRDPVTGDIPWPGTAFGMPITALWYWCINQVIVQRCLCGKNLSHVKAACILCGYLKLLPLFFMVMPGMISRILYTDMVACVVPSECVKHCGVDVGCTNYAYPMLVLKLMPMGLRGLMLSVMLASLMSSLTSVFNSASTLFTIDLYTKIRKKASERELLIAGRLFVSVLIVTSILWVPIVEVSQGGQLVHYTEAISSYLGPPIAAVFLVAVFCKRANEQGAFWGLMVGLVMGLIRMIAEFSYGTGSCLAPSSCPKIICGVHYLYFAIILFFVCILVILGVSYLTKPIPDVHLHRLCWALRNSKEERIDLDAEDKEENGADDRTEEDQTEKPRGCLKKTCDLFCGLQRAEFKLTKVEEEALTDTTEKPFWRTVMNVNVILLLAVAAFFYGYFA", "length": 656 }, "evidence": [ { "id": "F1RLU7", "url": "https://omabrowser.org/oma/group/F1RLU7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NY91-1", "protein_name": "Probable glucose sensor protein SLC5A4", "gene_name": "SLC5A4", "tax_id": 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"title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RM05-1", "uniprot_ac": "F1RM05", "uniprot_id": "F1RM05_PIG", "mass": { "chemical_mass": 19465.0, "monoisotopic_mass": 19465.0 }, "refseq": { "ac": "XP_003127289", "name": "transmembrane protein 160", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127289" }, "gene_names": [ { "name": "TMEM160", "type": "recommended", "evidence": [ { "id": "F1RM05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM05" } ] }, { "name": "TMEM160", "type": "synonym", "evidence": [ { "id": "XP_003127289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127289" } ] } ], "protein_names": [ { "name": "Transmembrane protein 160", "type": "synonym", "evidence": [ { "id": "F1RM05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM05/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 160", "type": "synonym", "evidence": [ { "id": "XP_003127289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127289" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RM05", "url": "https://www.uniprot.org/uniprotkb/F1RM05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM160", "url": "https://www.uniprot.org/uniprotkb/F1RM05", "locus": { "chromosome": "6", "start_pos": 52874828, "end_pos": 52877190, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003109", "url": "https://www.ensembl.org/id/ENSSSCG00000003109" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003109", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003109", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514771", "url": "https://www.ncbi.nlm.nih.gov/gene/100514771", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026801", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026801", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514771", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514771", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WWARARL", "url": "https://omabrowser.org/oma/group/WWARARL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RM05", "url": "https://www.orthodb.org/?gene=F1RM05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16236", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16236", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16236:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16236:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127289", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127289", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RM05", "url": "https://www.uniprot.org/uniprotkb/F1RM05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM05-1", "url": "https://www.uniprot.org/uniprotkb/F1RM05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGGWWWARAARLARLRFRGALLPPPRPRSGGARGSFAPGHGPRSGASPPPVSELDRADAWLLRKAHETAFLSWFRNGLLASGIGVISFMQSDMGREAAYGFFLLGGLCVVWGGASYVVGLAALRGPMQLSLGGAAAGVGAVLAAGLLWACAVGLYMGQLELDVELVPEDDGTAAAEGPDEAGRPPPE", "length": 188, "header": "tr|F1RM05-1|F1RM05_PIG Isoform 1 of Transmembrane protein 160 OS=Sus scrofa OX=9823 GN=TMEM160 PE=4 SV=1 CANONICAL=F1RM05-1" }, "isoforms": [ { "isoform_ac": "F1RM05-1", "url": "https://www.uniprot.org/uniprotkb/F1RM05/entry", "sequence": { "sequence": "MGGGWWWARAARLARLRFRGALLPPPRPRSGGARGSFAPGHGPRSGASPPPVSELDRADAWLLRKAHETAFLSWFRNGLLASGIGVISFMQSDMGREAAYGFFLLGGLCVVWGGASYVVGLAALRGPMQLSLGGAAAGVGAVLAAGLLWACAVGLYMGQLELDVELVPEDDGTAAAEGPDEAGRPPPE", "length": 188, "header": "tr|F1RM05-1|F1RM05_PIG Isoform 1 of Transmembrane protein 160 OS=Sus scrofa OX=9823 GN=TMEM160 PE=4 SV=1 CANONICAL=F1RM05-1" }, "locus": { "chromosome": "6", "start_pos": 52877153, "end_pos": 52874908, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003448.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003448.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003365.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003365.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RM05", "url": "https://www.uniprot.org/uniprotkb/F1RM05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514771", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514771", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q24JY6-1", "protein_name": "Transmembrane protein 160", "gene_name": "TMEM160", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGGGWWWARAARLARLRFRGALLPPPRPRSGGARGSFAPGHGPRAGASPPPVSELDRADAWLLRKAHETAFLSWFRNGLLASGIGVISFMQSDMGREAAYGFFLLGGLCVVWGGASYVVGLAALRGPMQLSVGGAAAGVGAVLAAGLLWACAVGLYMGQLELDVELVPEDDGTTAAEGPDEAGRPPPE", "length": 188 }, "evidence": [ { "id": "F1RM05", "url": "https://omabrowser.org/oma/group/F1RM05/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D938-1", "protein_name": "Transmembrane protein 160", "gene_name": "Tmem160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGGGWWWARVARLARLRFRGSLQPPQRPRSGGARGSFAPGHGPRAGASPPPVSELDRADAWLLRKAHETAFLSWFRNGLLSSGIGVISFMQSDMGREAAYGFFLLGGLCVVWGGASYAVGLAALRGPMQLSLAGAAAGVGAVLAASLLWACAVGLYMGQLELDVELVPEDDGAASTEGPDEAGRPPPE", "length": 188 }, "evidence": [ { "id": "F1RM05", "url": "https://omabrowser.org/oma/group/F1RM05/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NX00-1", "protein_name": "Transmembrane protein 160", "gene_name": "TMEM160", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGGGWWWARAARLARLRFRRSLLPPQRPRSGGARGSFAPGHGPRAGASPPPVSELDRADAWLLRKAHETAFLSWFRNGLLASGIGVISFMQSDMGREAAYGFFLLGGLCVVWGSASYAVGLAALRGPMQLTLGGAAVGAGAVLAASLLWACAVGLYMGQLELDVELVPEDDGTASAEGPDEAGRPPPE", "length": 188 }, "evidence": [ { "id": "F1RM05", "url": "https://omabrowser.org/oma/group/F1RM05/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1RM05", "url": "https://www.uniprot.org/uniprotkb/F1RM05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RM12-1", "uniprot_ac": "F1RM12", "uniprot_id": "F1RM12_PIG", "mass": { "chemical_mass": 108726.0, "monoisotopic_mass": 108726.0 }, "refseq": {}, "gene_names": [ { "name": "RBM27", "type": "recommended", "evidence": [ { "id": "F1RM12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ] } ], "protein_names": [ { "name": "RNA-binding protein 27", "type": "recommended", "evidence": [ { "id": "F1RM12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM12/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 27", "type": "synonym", "evidence": [ { "id": "F1RM12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM12/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be involved in the turnover of nuclear polyadenylated (pA+) RNA.", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12#function" }, { "database": "UniProtKB", "id": "ARBA00043866", "url": "https://www.uniprot.org/uniprotkb/ARBA00043866#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM27", "url": "https://www.uniprot.org/uniprotkb/F1RM12", "locus": { "chromosome": "2", "start_pos": 147644237, "end_pos": 147569793, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014414", "url": "https://www.ensembl.org/id/ENSSSCG00000014414" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014414", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014414", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12517", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12517", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ANAKCWQ", "url": "https://omabrowser.org/oma/group/ANAKCWQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14398", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14398", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14398:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14398:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01480", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01480", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9930044", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RM12-1", "url": "https://www.uniprot.org/uniprotkb/F1RM12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPPVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSESSERRTREKKREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRSVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNPPPKRRCRDYDGPPITQSSLINNRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSPTQLLLQQQQTLSHLSQPHHHLPQHLHQQQVLVAQSPPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQTDAAHLLNQSGGAGEDCQMFSPPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGGRGRGSLSHMVVDHRPKALTVGGFIEEEKDDLLQHFSPANQGSKFKDRRLQISWHKAKVPSVSTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR", "length": 962, "header": "tr|F1RM12-1|F1RM12_PIG Isoform 1 of RNA-binding protein 27 OS=Sus scrofa OX=9823 GN=RBM27 PE=1 SV=3 CANONICAL=F1RM12-1" }, "isoforms": [ { "isoform_ac": "F1RM12-1", "url": "https://www.uniprot.org/uniprotkb/F1RM12/entry", "sequence": { "sequence": "MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPPVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSESSERRTREKKREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRSVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNPPPKRRCRDYDGPPITQSSLINNRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSPTQLLLQQQQTLSHLSQPHHHLPQHLHQQQVLVAQSPPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQTDAAHLLNQSGGAGEDCQMFSPPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGGRGRGSLSHMVVDHRPKALTVGGFIEEEKDDLLQHFSPANQGSKFKDRRLQISWHKAKVPSVSTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR", "length": 962, "header": "tr|F1RM12-1|F1RM12_PIG Isoform 1 of RNA-binding protein 27 OS=Sus scrofa OX=9823 GN=RBM27 PE=1 SV=3 CANONICAL=F1RM12-1" }, "locus": { "chromosome": "2", "start_pos": 147641057, "end_pos": 147569957, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015753.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015753.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015337.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015337.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 790, "start_aa": "Thr", "end_pos": 790, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr790", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9930044", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "resource": "Reactome", "description": "Nuclear RNA decay" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0L4J7-1", "protein_name": "RNA-binding protein 27", "gene_name": "Rbm27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDVRKKKYPSPQKSRSESSERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSINSNITRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHNLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHATTNQSDTSHLLNQTGGSSGDDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGRGRGSLNHMVVDHRPKALPAGGFIEEEKEELLQHFSATNQSSKFKDRRLQISWHKPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR", "length": 1046 }, "evidence": [ { "id": "F1RM12", "url": "https://omabrowser.org/oma/group/F1RM12/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NM59-1", "protein_name": "RNA binding motif protein 27", "gene_name": "RBM27", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLIDNVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKSYLPSHEPTKVEAKPAGQEKEVTKEELSVKQNFQESVEEERDSRKKKHSSPQRSRADSSEQRTRDKRRDDGKWRDYDRYYDRSDLYRDKSSWRRGRSKSRSKSRGLSRSRSRSRGRSKDHDANRNVEHRERSKFKSERNDVEGTYNPVSASASNSTEQYSAAQSIPSAVTVIAPAHHLENTTESWSNYYNNHSNPSSFGRNPPPKRRCQDYDERGFCVLGDLCQFDHGNDPLVVDEVSLPSMIPFPPPPPGLPPPPGMLLPPMPGPARSLRIPVPQAHPQAPPPVVLPVPRPPLTQSSLINNREQPGTSAVPSLAPVGARLPPPLPQNLLYTVSEHTYEPDGYNPEAPSITSAGRSQYRQFFTRAQTQRPNLIGLTSGEMDTNPRAANIIIQTEPPIPITNNSSNVTRVVLEPDSRKRSPSSLECPPLKKPWLGKQANNNQNKPGFLKKNQYTNTKLEVRKIPPELNNITQLNEHFSKFGTIVNIQVAFQNDPEAALIQYLTNDEARKAISSTEAVLNNRFIRVHWHRESEQQPPLLQQQQQQSPSQSLHHQLHLQQQALTPAPAVTMHSNISKAMNKPLASGAYVLNKVPVKRRLGAAGGNQSDLSQAGAVVEDSQTFPTSASHSKMVYSSSNLKTAMKPGAGSKPHDVQEALKKKQEAMKLQQDMRKKKQEMLEKQIECQKMLISKLEKNKAMKPEERAEIMKTLKELAGKISQLKDELKTSSTASTPSKLKSKTEAQKELLDAELDFHKRLSSGEDTTELRKKLNQLQVEAARLGILPAGRGKTVPAQGRGRGRGRGGRGRGMLNHMVVDHRPKALTVGGFIEEEKDELLQHFSKFGDIEDLQEEDSPLSVVLTFKSRSEAENAANQGSKFKDRRLQISWYKPKVPSVSTEVEEEESKEEETETSDLFLHEDDDDEDEDEDESRSWRR", "length": 1006 }, "evidence": [ { "id": "F1RM12", "url": "https://omabrowser.org/oma/group/F1RM12/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5SFM8-1", "protein_name": "RNA-binding protein 27", "gene_name": "Rbm27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPPLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDTRKKKYPSPQKSRSESSERRTREKKREDGKWRDYERYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPSSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPISQSSLINSRDQPGTSAVPNLAPVGARLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRAQTQRPNLIGLTSGDMDANPRAANIVIQTEPPVPVSVNSNVTRVVLEPESRKRAISGLEGPLTKKPWLGKQGNNNQSKPGFLRKNHYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPALQSSAQILLQQQHTLSHLSQQHHSLPQHLHPQQVMVTQSSPSSVHGGIQKMMGKPQTSGAYVLNKVPVKHRLGHASTNQSDTSHLLNQTGGSSGEDCPVFSTPGHPKTIYSSSNLKAPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKKQEMLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSTVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTISSQGRGRGRGRGRGRGSLNHMVVDHRPKALPGGGFIEEEKDELLQHFSATNQASKFKDRRLQISWHKPKVPSISTETEEEEVKEEETETSDLFLHDDDDEDEDEYESRSWRR", "length": 1060 }, "evidence": [ { "id": "F1RM12", "url": "https://omabrowser.org/oma/group/F1RM12/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LVX1-1", "protein_name": "Zinc finger CCCH domain-containing protein 41", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAFSRPYRKNYRHYENGNSFSEHEKRSFGTGSGQRVQFDNQRMRSNPMFSRDSGPGRGRGNYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGRGLAGVSAAQSAPWPPFGMIPGVPNGGLDGFHHLQGSLRPPLNAPLNMGIPRQRCRDFEERGFCLRGDMCPMEHGMNRIVVDDVQSLSQFNLPVSVPGAPHLAASSKQVPAQFGGASFMNPKGAHGRTNEGGMAVDGLGYGDAYPSAGGTDFYDPDQPLWNNSTGETSGAISTLNSHGVDENVAPLDDSNQDAAENGCGIRDSRSTSQSVWGRMKGSNSQANSKEKADAVLNSSAVPEDQLKEVSVNSSRHGKQNHVGESVAKVVDSSNISNDMMNNTRKPTQKAMRTLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHVSSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKTESSTDKKVPILKPLSTAKLSTETPSPDSKNFKQRPYSFTTSLNAPMVNRYKLDNRTTTIKVVPPLPTGLADVAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVTFVKRSAAEKAFANAKCWQEHTLQLVWVTRQSNRESNNNNNNSNSLSVSRDNLSSKNKCASVSNDPKPAVEVKTSSTEEPENTNVSGDNDSTLDKQETKESDNDNNKSNHESIEGASEVIATAGTDEEQSEQIHQ", "length": 908 }, "evidence": [ { "id": "F1RM12", "url": "https://omabrowser.org/oma/group/F1RM12/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9P2N5-1", "protein_name": "RNA-binding protein 27", "gene_name": "RBM27", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLIEDVDALKSWLAKLLEPICDADPSALANYVVALVKKDKPEKELKAFCADQLDVFLQKETSGFVDKLFESLYTKNYLPLLEPVKPEPKPLVQEKEEIKEEVFQEPAEEERDGRKKKYPSPQKTRSESSERRTREKKREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNVEHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAPAHHSENTTESWSNYYNNHSSSNSFGRNLPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPNLASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAARLVPPRNLMGSSIGYHTSVSSPTPLVPDTYEPDGYNPEAPSITSSGRSQYRQFFSRTQTQRPNLIGLTSGDMDVNPRAANIVIQTEPPVPVSINSNITRVVLEPDSRKRAMSGLEGPLTKKPWLGKQGNNNQNKPGFLRKNQYTNTKLEVKKIPQELNNITKLNEHFSKFGTIVNIQVAFKGDPEAALIQYLTNEEARKAISSTEAVLNNRFIRVLWHRENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVLVAQSAPSTVHGGIQKMMSKPQTSGAYVLNKVPVKHRLGHAGGNQSDASHLLNQSGGAGEDCQIFSTPGHPKMIYSSSNLKTPSKLCSGSKSHDVQEVLKKKQEAMKLQQDMRKKRQEVLEKQIECQKMLISKLEKNKNMKPEERANIMKTLKELGEKISQLKDELKTSSAVSTPSKVKTKTEAQKELLDTELDLHKRLSSGEDTTELRKKLSQLQVEAARLGILPVGRGKTMSSQGRGRGRGRGGRGRGSLNHMVVDHRPKALTVGGFIEEEKEDLLQHFSTANQGPKFKDRRLQISWHKPKVPSISTETEEEEVKEEETETSDLFLPDDDDEDEDEYESRSWRR", "length": 1060 }, "evidence": [ { "id": "F1RM12", "url": "https://omabrowser.org/oma/group/F1RM12/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1RM12", "url": "https://www.uniprot.org/uniprotkb/F1RM12" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 660, "end_pos": 662, "annotation": "n_glycosylation_sequon" }, { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RM12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM12" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 502, "end_pos": 576, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 790 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 193, "end_pos": 195 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 251, "end_pos": 253 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 487, "end_pos": 489 }, { "start_pos": 515, "end_pos": 517 }, { "start_pos": 660, "end_pos": 662 }, { "start_pos": 669, "end_pos": 671 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RM19-1", "uniprot_ac": "F1RM19", "uniprot_id": "F1RM19_PIG", "mass": { "chemical_mass": 19978.0, "monoisotopic_mass": 19978.0 }, "refseq": { "ac": "XP_003124115", "name": "PLAC8-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124115" }, "gene_names": [ { "name": "PLAC8L1", "type": "recommended", "evidence": [ { "id": "F1RM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM19" } ] }, { "name": "PLAC8L1", "type": "synonym", "evidence": [ { "id": "XP_003124115", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124115" } ] } ], "protein_names": [ { "name": "PLAC8 like 1", "type": "synonym", "evidence": [ { "id": "F1RM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RM19/entry#names_and_taxonomy" } ] 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generated by protein cleavage in response to mitochondrial stress, which accumulates in the cytosol and specifically binds to and activates the protein kinase activity of EIF2AK1/HRI. It thereby activates the integrated stress response (ISR): EIF2AK1/HRI activation promotes eIF-2-alpha (EIF2S1) phosphorylation, leading to a decrease in global protein synthesis and the induction of selected genes, including the transcription factor ATF4, the master transcriptional regulator of the ISR. Also acts as an activator of PRKN-independent mitophagy: activates the protein kinase activity of EIF2AK1/HRI in response to mitochondrial damage, promoting eIF-2-alpha (EIF2S1) phosphorylation, leading to mitochondrial localization of EIF2S1 followed by induction of mitophagy.", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48#function" }, { "database": "UniProtKB", "id": "ARBA00057911", "url": "https://www.uniprot.org/uniprotkb/ARBA00057911#function" } ] }, { "annotation": "Protein kinase activator that activates the ISR in response to iron deficiency: iron deficiency impairs mitochondrial import, promoting DELE1 localization at the mitochondrial surface, where it binds and activates EIF2AK1/HRI to trigger the ISR.", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48#function" }, { "database": "UniProtKB", "id": "ARBA00059730", "url": "https://www.uniprot.org/uniprotkb/ARBA00059730#function" } ] }, { "annotation": "Protein kinase activator that acts as a key activator of the integrated stress response (ISR) following various stresses, such as iron deficiency, mitochondrial stress or mitochondrial DNA breaks. 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"ENSSSCT00000015734.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015734.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015319.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015319.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9840373", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840373", "resource": "Reactome", "description": "Cellular response to mitochondrial stress" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of mitophagy", "id": "GO:1901526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901526", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "pmid": "" }, { "name": "extrinsic apoptotic signaling pathway via death domain receptors", "id": "GO:0008625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008625", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "pmid": "" }, { "name": "response to iron ion starvation", "id": "GO:1990641", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990641", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "pmid": "" }, { "name": "HRI-mediated signaling", "id": "GO:0140468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140468", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RM48", "url": 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"database": "UniProtKB", "id": "F1RM48", "url": "https://www.uniprot.org/uniprotkb/F1RM48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RM48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 508, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RM48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RM48" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], 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"id": "PTHR21705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21705:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21705:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10257", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10257", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19311", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19311", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19314", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19314", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RMC0", "url": "https://www.uniprot.org/uniprotkb/F1RMC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMC0-1", "url": "https://www.uniprot.org/uniprotkb/F1RMC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSRLGALLQEAVGAREPSIDLLEAFVEHWKGITNYYIESTDENTPAKKTDIPWRLKQMLDILVYEERQQAAGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVLQFFSKVLAQVQHPLLHYLNVHRPVQKLLRLGGTVPGSLTEKEEVQFTTVLCSKIQQDPALLTYILEGKKTVSRKKASREATVLPKEAASSKDKDHPHNKALDRGPCGARALNTQLPAEMDEPGGGVGESNLITSLIGLCKSKKGRVALKAQENLLLLVSVASQAAATFLVQSSPCCPAIVEHLCQLYQSLPTFLDPADIAALEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLIREAHTVVSDALAKAVAEKLFAEILQPQLLHVSEQSVLTSTALFTAMLHQLCSPALLREAVAFLLGKDQQPAAPEDSPHTLCAHLIKHCDHLSDEISIATLRLFEELLQKPHEQIIHSLVLCHLEGRPYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGFQRPTKPPPAPAANPDGKTAVTEIVSSFLCLVPEEAKTSAFLEETGYDTYVHDAYGLFQECSSRVAPWGWPLGPPPLDPHEPERPFFEGHFLRMLFDRMSRILEQPYSLNLQVTSVLSRLALFPHPLIHEYLLDPYINLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRRQLMGQVPGEQLDHQTLLQGVVVLEEFCKELAAIAFVKFPPRGPHLHLAEPPEGHA", "length": 737, "header": "tr|F1RMC0-1|F1RMC0_PIG Isoform 1 of FHF complex subunit HOOK interacting protein 2B OS=Sus scrofa OX=9823 GN=FHIP2B PE=3 SV=1 CANONICAL=F1RMC0-1" }, "isoforms": [ { "isoform_ac": "F1RMC0-1", "url": "https://www.uniprot.org/uniprotkb/F1RMC0/entry", "sequence": { "sequence": "MLSRLGALLQEAVGAREPSIDLLEAFVEHWKGITNYYIESTDENTPAKKTDIPWRLKQMLDILVYEERQQAAGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVLQFFSKVLAQVQHPLLHYLNVHRPVQKLLRLGGTVPGSLTEKEEVQFTTVLCSKIQQDPALLTYILEGKKTVSRKKASREATVLPKEAASSKDKDHPHNKALDRGPCGARALNTQLPAEMDEPGGGVGESNLITSLIGLCKSKKGRVALKAQENLLLLVSVASQAAATFLVQSSPCCPAIVEHLCQLYQSLPTFLDPADIAALEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLIREAHTVVSDALAKAVAEKLFAEILQPQLLHVSEQSVLTSTALFTAMLHQLCSPALLREAVAFLLGKDQQPAAPEDSPHTLCAHLIKHCDHLSDEISIATLRLFEELLQKPHEQIIHSLVLCHLEGRPYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGFQRPTKPPPAPAANPDGKTAVTEIVSSFLCLVPEEAKTSAFLEETGYDTYVHDAYGLFQECSSRVAPWGWPLGPPPLDPHEPERPFFEGHFLRMLFDRMSRILEQPYSLNLQVTSVLSRLALFPHPLIHEYLLDPYINLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRRQLMGQVPGEQLDHQTLLQGVVVLEEFCKELAAIAFVKFPPRGPHLHLAEPPEGHA", "length": 737, "header": "tr|F1RMC0-1|F1RMC0_PIG Isoform 1 of FHF complex subunit HOOK interacting protein 2B OS=Sus scrofa OX=9823 GN=FHIP2B PE=3 SV=1 CANONICAL=F1RMC0-1" }, "locus": { "chromosome": "14", "start_pos": 6375411, "end_pos": 6360445, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010537.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010537.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010261.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010261.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMC0", "url": "https://www.uniprot.org/uniprotkb/F1RMC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155695", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0JPF5-1", "protein_name": "FHF complex subunit HOOK-interacting protein 2B", "gene_name": "fhip2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDMFNKVTAFLQQALETREPSINLLESFVDHWKAITNYYIETTDESRAVKNTDIPWRLRQMLDILVYEEKQQGEEAGPCMEYLLQHKILETLCTLGKAQYPPGMSQQVMVFFSKVLSHIQKPVLHLINVYRPVQKLINLCGLPHSQTEKEESQFLFAVCTQVNKDPYVLNYILEIKNDSLKRSSSTSDEAAEKDCSGSSSPERASSPSSSSSACSLLSRSGAHPVSSPQEATGMIPVLLHLEKSEKRRVAHRSLESLLLLVSSTQEDTGHLLAERTPLCDLLAQRLTELYLLIPSTIDPADIHSFSVVQWRTRFTQDSTAESQSFPGSENVYRFFCFLDLCNELIKQAPKVLGVKMARALHSQWLKGVIQPHLLQMSEVGILVHTTLLSCSVRHIHSPALLEELVQFMLGSDTDSETRQHLHTHLLRYRLIEHCNHISDEISITTLRLFEELLQKPNRRILSNLVLRNLENRSYKLPGTGASDERLRVESDLLDESEELEEDPFFPDMYDDSGDSNHEPLLSLPNVRERLNPNLHTQVVDTVNSFLCLVPQEAKTSHLVQGAGYDTYVHDAHKVFKECTALVRDWKWPDSAKATVNNPSTDFYEGHFLHILFDRIARILEQPYELNLQVTSVLSRLAVFPHPNLHEYLLDPYISLSPGARSLFSTLVRVIGDLMQRIQNITNVTDRLVVIRRQLMGLDEESMVDHMTLLKGVIVLEEFCKELAAVAFVKLPTEEQ", "length": 735 }, "evidence": [ { "id": "F1RMC0", "url": "https://omabrowser.org/oma/group/F1RMC0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80YR2-1", "protein_name": "FHF complex subunit HOOK-interacting protein 2B", "gene_name": "Fhip2b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSRLGALLQEAVGAREPSIDLLQAFVEHWKGITHYYIESTDENTPAKKTDIPWRLKQMLDILVYEEKQQASSGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLSQVQHPLLHYLSVHRPVQKLLRLGGTVPGSLTEKEEVQFTSVLCSKIQQDPELLAYILEGKKIIGKKKTARESTAPPKDIAGYRDKDCPHSDALNRDPGLDKEHCGVPALSIHLPAETEGPENGPGESNLITSLLGLCKSKKSRLALKAQENILLLVSVASPAAATYLTQSTSCCMAIAEHLCQLYRSMPACLDPADIATLEGISWRLPSAPSDETAFPGKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAEKLFVETLQPQLLHVSEQSILTSTALLTALLRQLRSPALLQEAMTFLLGTDQHPAAIEDSPHTLGTHLIMHCDHLSDEISIATLRLFEELLQKPHEQAIRSLVLQNLEGRLYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHDAYGLFQECSSRVAHWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRIARILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFSGKLLLVRKQLMGQVPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHGPYLNFSPPPEGQV", "length": 744 }, "evidence": [ { "id": "F1RMC0", "url": "https://omabrowser.org/oma/group/F1RMC0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86V87-1", "protein_name": "FHF complex subunit HOOK-interacting protein 2B", "gene_name": "FHIP2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSRLGALLQEAVGAREPSIDLLQAFVEHWKGITHYYIESTDESTPAKKTDIPWRLKQMLDILVYEEQQQAAAGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGTASGSVTEKEEVQFTTVLCSKIQQDPELLAYILEGKKIVGRKKACGEPTALPKDTTSHGDKDCSHDGAPARPQLDGESCGAQALNSHMPAETEELDGGTTESNLITSLLGLCQSKKSRVALKAQENLLLLVSMASPAAATYLVQSSACCPAIVRHLCQLYRSMPVFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLITEAHTVVADALAKAVAENFFVETLQPQLLHVSEQSILTSTALLTAMLRQLRSPALLREAVAFLLGTDRQPEAPGDNPHTLYAHLIGHCDHLSDEISITTLRLFEELLQKPHEGIIHSLVLRNLEGRPYVAWGSPEPESYEDTLDLEEDPYFTDSFLDSGFQTPAKPRLAPATSYDGKTAVTEIVNSFLCLVPEEAKTSAFLEETGYDTYVHDAYGLFQECSSRVASWGWPLTPTPLDPHEPERPFFEGHFLRVLFDRMSRILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRKQLTGQAPGEQLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHDPRQNVSPAPEGQV", "length": 743 }, "evidence": [ { "id": "F1RMC0", "url": "https://omabrowser.org/oma/group/F1RMC0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMC0" }, { "id": "PF19314", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19314" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHF complex subunit HOOK-interacting protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 594, "end_pos": 686, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMF9-1", "uniprot_ac": "F1RMF9", "uniprot_id": "F1RMF9_PIG", "mass": { "chemical_mass": 84149.0, "monoisotopic_mass": 84149.0 }, "refseq": { "ac": "XP_003353909", "name": "protein FAM111B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353909" }, "gene_names": [ { "name": "FAM111B", "type": "recommended", "evidence": [ { "id": "F1RMF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ] }, { "name": "FAM111B", "type": "synonym", "evidence": [ { "id": "XP_003353909", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353909" } ] } ], "protein_names": [ { "name": "FAM111 trypsin like peptidase B", "type": "synonym", "evidence": [ { "id": "F1RMF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMF9/entry#names_and_taxonomy" } ] }, { "name": "protein FAM111B", "type": "synonym", "evidence": [ { "id": "XP_003353909", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353909" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM111B", "url": "https://www.uniprot.org/uniprotkb/F1RMF9", "locus": { "chromosome": "2", "start_pos": 12268695, "end_pos": 12279559, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013147", "url": "https://www.ensembl.org/id/ENSSSCG00000013147" } ] } } ], "crossref": [ { "id": "F1RMF9", "url": "https://alphafold.ebi.ac.uk/entry/F1RMF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013147", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013147", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517326", "url": "https://www.ncbi.nlm.nih.gov/gene/100517326", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517326", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517326", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCDIKQK", "url": "https://omabrowser.org/oma/group/LCDIKQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMF9", "url": "https://www.orthodb.org/?gene=F1RMF9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14389:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14389:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003353909", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353909", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMF9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNFMKAEENKSFSTVGNDLSTGPEISKDTTMQQTCSDTPADQLLANLQVSIRTIKIKSEVSEQKISPESQNPHLSTSKKYFTFMLQIGSRKSDQTRKTAHGGLNENIDSALKNNEHFRRHVQDPFKWNIMAYEETTIKGFVNLGMPLRCLPEKSHFKITIVPRKSKQENYDPMLRLCENPDIECILFHVLSIGKNIKKIVKIMDLHEKGSKLCVYAFKGETIKEALCKDGRFRSDLDSLEWELVEGHQNVHGKESTVDQISGKLLEMEVLIKKDKKKGTGTKIKQRNENATDEINHRDSIWSKSTVHEPGPNGETEDTEHNREKILPFQSLESKKHRTISEIKGYYDGSFNTSCMGETSQVRLRSPLPIECAFYTDRQKEATNSWKKNVKILGKAIMHRYPFFNEEVLRVRKYLEEEQKRNLPPFEQFNIYKEYFGKVTENSTSVETCERLIHHSESVGFMKWDVNGNSGSATCFVIKNGYIFTCRHVLDLILRDSTNPSLQLDIISSCVKVTFSYKSFCPKDNDWFSLEKCFAVSDETLDYAILKLSKNGHRFPPGLFQHVSPQPSGGLIYLIGHPEGQIKKIDGCMVIPLEQRLESYPENHRDRVAGTHAPIYNACPVLTQRSFLTEAWSRETLSYDTCFSSGSSGSPVFNASGRLVAMHSFGHFYRHENKVYALIEFGYSMDSILSDIKRKHERLYKLLEEEENENHEEERENTRESSLRDHQVEPMEH", "length": 732, "header": "tr|F1RMF9-1|F1RMF9_PIG Isoform 1 of FAM111 trypsin like peptidase B OS=Sus scrofa OX=9823 GN=FAM111B PE=4 SV=1 CANONICAL=F1RMF9-1" }, "isoforms": [ { "isoform_ac": "F1RMF9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMF9/entry", "sequence": { "sequence": "MNFMKAEENKSFSTVGNDLSTGPEISKDTTMQQTCSDTPADQLLANLQVSIRTIKIKSEVSEQKISPESQNPHLSTSKKYFTFMLQIGSRKSDQTRKTAHGGLNENIDSALKNNEHFRRHVQDPFKWNIMAYEETTIKGFVNLGMPLRCLPEKSHFKITIVPRKSKQENYDPMLRLCENPDIECILFHVLSIGKNIKKIVKIMDLHEKGSKLCVYAFKGETIKEALCKDGRFRSDLDSLEWELVEGHQNVHGKESTVDQISGKLLEMEVLIKKDKKKGTGTKIKQRNENATDEINHRDSIWSKSTVHEPGPNGETEDTEHNREKILPFQSLESKKHRTISEIKGYYDGSFNTSCMGETSQVRLRSPLPIECAFYTDRQKEATNSWKKNVKILGKAIMHRYPFFNEEVLRVRKYLEEEQKRNLPPFEQFNIYKEYFGKVTENSTSVETCERLIHHSESVGFMKWDVNGNSGSATCFVIKNGYIFTCRHVLDLILRDSTNPSLQLDIISSCVKVTFSYKSFCPKDNDWFSLEKCFAVSDETLDYAILKLSKNGHRFPPGLFQHVSPQPSGGLIYLIGHPEGQIKKIDGCMVIPLEQRLESYPENHRDRVAGTHAPIYNACPVLTQRSFLTEAWSRETLSYDTCFSSGSSGSPVFNASGRLVAMHSFGHFYRHENKVYALIEFGYSMDSILSDIKRKHERLYKLLEEEENENHEEERENTRESSLRDHQVEPMEH", "length": 732, "header": "tr|F1RMF9-1|F1RMF9_PIG Isoform 1 of FAM111 trypsin like peptidase B OS=Sus scrofa OX=9823 GN=FAM111B PE=4 SV=1 CANONICAL=F1RMF9-1" }, "locus": { "chromosome": "2", "start_pos": 12277902, "end_pos": 12268856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014367.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014367.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013979.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517326", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517326", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BGY1-1", "protein_name": "FAM111 trypsin like peptidase B", "gene_name": "FAM111B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKGQDGSKPDPEQGRGLWRERWVSREWTGWRRCPHDAPGARLPTREPPRQPGPLPPFLAAALSGSANRLLQGDNFRAGRVSSERRPRNLDRGSLSRHHPHRRGRFSASVSGSSDLEEDVEFLGRRGAVVEESHILLGLIMNFIKTEENTSFSATGNDQSTRPEASKDTVIEEACSGTPVDQSLSDIRERNSTIKVKSEVIEQETSSERQNPHVSTSEKCLFTFSLNERRRKLDHRVFTAFGGPNENIYSVLSADDHFSERMKKHVNKNIIVYEEETIKAYINLGMPLRCLPSGSHLKITFGQRSNEKDDQVLRPCKNPDTECILFHVVAIGKTRKMIVKINELHVQGTTLCVYALKGETIKEALCNDGRFLSNLDTLEWTLRDHKNIYGKQSIVDIVSGKVLELEILKKLSIKKCTHIKIKPEDENATADISLQALTQSKSKAHEPEKDGETEDVEHNREKILPCQSLGLDIKHKTRRSISKIKRYYNNNLYKRLRRKITRVRRRPSLGRLYAILAIQRETTNLWVKNLQILNKVMMHQYPNFNKEALRIQKYFQEERERMKLTTSKQFSMYKHYFGKVTENSVSVAICERLVHLSKSVGFMKWDNNGNTGNATCFVFNDGFIFTCRHVLHLIVGEGTDRKSWPDIISTCVKVTFTYKEFCPNDVDWLSFEPWFMVSGETLDYAILKLSENGNGFPPGLSKLIFRQPSDGLLYLIGHPEGQIKKIDGCSVISLEQRLERYKEHYSDGVVPGSCSDIYNAFPMFTQRSFLSEVWSTNTLSYDTYFSSGSSGSPVFNASGKLVAMHSFGHFYSHVNKAYALIEFGYSMESILCDIKQKDENLYKLLQEEKNESHNEEKDNKQELSLQESQIESMQY", "length": 874 }, "evidence": [ { "id": "F1RMF9", "url": "https://omabrowser.org/oma/group/F1RMF9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6SJ93-1", "protein_name": "Serine protease FAM111B", "gene_name": "FAM111B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNSMKTEENKSFSAMEDDQRTRPEVSKDTVMKQTHADTPVDHCLSGIRKCSSTFKLKSEVNKHETALEMQNPNLNNKECCFTFTLNGNSRKLDRSVFTAYGKPSESIYSALSANDYFSERIKNQFNKNIIVYEEKTIDGHINLGMPLKCLPSDSHFKITFGQRKSSKEDGHILRQCENPNMECILFHVVAIGRTRKKIVKINELHEKGSKLCIYALKGETIEGALCKDGRFRSDIGEFEWKLKEGHKKIYGKQSMVDEVSGKVLEMDISKKKALQQKDIHKKIKQNESATDEINHQSLIQSKKKVHKPKKDGETKDVEHSREQILPPQDLSHYIKDKTRQTIPRIRNYYFCSLPRKYRQINSQVRRRPHLGRRYAINLDVQKEAINLLKNYQTLNEAIMHQYPNFKEEAQWVRKYFREEQKRMNLSPAKQFNIYKKDFGKMTANSVSVATCEQLTYYSKSVGFMQWDNNGNTGNATCFVFNGGYIFTCRHVVHLMVGKNTHPSLWPDIISKCAKVTFTYTEFCPTPDNWFSIEPWLKVSNENLDYAILKLKENGNAFPPGLWRQISPQPSTGLIYLIGHPEGQIKKIDGCTVIPLNERLKKYPNDCQDGLVDLYDTTSNVYCMFTQRSFLSEVWNTHTLSYDTCFSDGSSGSPVFNASGKLVALHTFGLFYQRGFNVHALIEFGYSMDSILCDIKKTNESLYKSLNDEKLETYDEEKGKQESSLQDHQIEPMEC", "length": 734 }, "evidence": [ { "id": "F1RMF9", "url": "https://omabrowser.org/oma/group/F1RMF9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" }, { "name": "nuclear lamina", "id": "GO:0005652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005652", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "replication fork processing", "id": "GO:0031297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031297", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" }, { "name": "protein-DNA covalent cross-linking repair", "id": "GO:0106300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106300", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "F1RMF9", "url": "https://www.uniprot.org/uniprotkb/F1RMF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 653, "end_pos": 655, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMF9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 732, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMF9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMF9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 289, "end_pos": 291 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 653, "end_pos": 655 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMG9-1", "uniprot_ac": "F1RMG9", "uniprot_id": "F1RMG9_PIG", "mass": { "chemical_mass": 33518.0, "monoisotopic_mass": 33518.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "MARVEL domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1RMG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMG9", "url": "https://www.uniprot.org/uniprotkb/F1RMG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RMG9", "locus": {} } ], "crossref": [ { "id": "F1RMG9", "url": "https://alphafold.ebi.ac.uk/entry/F1RMG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034559", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034559", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17068:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17068:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RMG9", "url": "https://www.uniprot.org/uniprotkb/F1RMG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMG9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DESTSRAGYSLMGPQLFRVLQLLSTCVAFSMEASTGTWIGGIGSWSLFIWCFCFVVTLIILIVEFCELQSRIPFYWYNFPINYACHAALFCLLASIIYSTTYVHLLPPGPTRDQAITATTAFSCIASLAYAMEVAWAWTWIWLGLITGYMATVPGLFKGLEIFMACVIFAFISSPLLYQHQPALVWCVAVYAICFLLAVTALLLNWCNWDNSLPIPFPIFQLGLTLLSVLLYTSALVLWPLYQFDEKVDSQPQKSRDMSCSEGLTYYLCTWDQRLAVAILTGLLILSSFQVLMSWTPC", "length": 298, "header": "tr|F1RMG9-1|F1RMG9_PIG Isoform 1 of MARVEL domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1RMG9-1" }, "isoforms": [ { "isoform_ac": "F1RMG9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMG9/entry", "sequence": { "sequence": "DESTSRAGYSLMGPQLFRVLQLLSTCVAFSMEASTGTWIGGIGSWSLFIWCFCFVVTLIILIVEFCELQSRIPFYWYNFPINYACHAALFCLLASIIYSTTYVHLLPPGPTRDQAITATTAFSCIASLAYAMEVAWAWTWIWLGLITGYMATVPGLFKGLEIFMACVIFAFISSPLLYQHQPALVWCVAVYAICFLLAVTALLLNWCNWDNSLPIPFPIFQLGLTLLSVLLYTSALVLWPLYQFDEKVDSQPQKSRDMSCSEGLTYYLCTWDQRLAVAILTGLLILSSFQVLMSWTPC", "length": 298, "header": "tr|F1RMG9-1|F1RMG9_PIG Isoform 1 of MARVEL domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1RMG9-1" }, "locus": { "chromosome": "7", "start_pos": 54125428, "end_pos": 54109242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002048.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002048.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001999.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001999.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 111, "start_aa": "Thr", "end_pos": 111, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr111", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": 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"PKPYVCM", "url": "https://omabrowser.org/oma/group/PKPYVCM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24409", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24409", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24409:SF331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24409:SF331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020950771", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950771", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RMK7", "url": "https://www.uniprot.org/uniprotkb/F1RMK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMK7-1", "url": "https://www.uniprot.org/uniprotkb/F1RMK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPTKLSPPQSAPPAGPPPRPRPPAPYICNECGKSFSHWSKLTRHQRTHTGERPNACSDCGKTFSQSSHLVQHRRIHTGEKPYACSECGKRFSWSSNLMQHQRIHTGEKPYACPDCGRSFTQSKSLAKHRRSHSGLKPFVCPRCGRGFSQPKSLARHLRLHPELSGPGVAAKVLAASVRRAKAPEEAAAADGEIAIPVGDGEGIIVVGAPGEGAAAAAAMAGTGAKAPGPRSRRAPAPKPYVCVECGKGFGHGAGLLAHQRAQHGDGLGAAGAEEPAHICVECGEGFVQGAALRRHKKVHAVGAPSVCSRCGQSYYRAGGEDKEDDDEAAGGRCSECRGGEGR", "length": 382, "header": "tr|F1RMK7-1|F1RMK7_PIG Isoform 1 of Zinc finger protein 787 OS=Sus scrofa OX=9823 GN=ZNF787 PE=3 SV=3 CANONICAL=F1RMK7-1" }, "isoforms": [ { "isoform_ac": "F1RMK7-1", "url": "https://www.uniprot.org/uniprotkb/F1RMK7/entry", "sequence": { "sequence": "MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPTKLSPPQSAPPAGPPPRPRPPAPYICNECGKSFSHWSKLTRHQRTHTGERPNACSDCGKTFSQSSHLVQHRRIHTGEKPYACSECGKRFSWSSNLMQHQRIHTGEKPYACPDCGRSFTQSKSLAKHRRSHSGLKPFVCPRCGRGFSQPKSLARHLRLHPELSGPGVAAKVLAASVRRAKAPEEAAAADGEIAIPVGDGEGIIVVGAPGEGAAAAAAMAGTGAKAPGPRSRRAPAPKPYVCVECGKGFGHGAGLLAHQRAQHGDGLGAAGAEEPAHICVECGEGFVQGAALRRHKKVHAVGAPSVCSRCGQSYYRAGGEDKEDDDEAAGGRCSECRGGEGR", "length": 382, "header": "tr|F1RMK7-1|F1RMK7_PIG Isoform 1 of Zinc finger protein 787 OS=Sus scrofa OX=9823 GN=ZNF787 PE=3 SV=3 CANONICAL=F1RMK7-1" }, "locus": { "chromosome": "6", "start_pos": 60433524, "end_pos": 60423076, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003681.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003681.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003596.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003596.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMK7", "url": "https://www.uniprot.org/uniprotkb/F1RMK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M9P8-1", "protein_name": "Zinc finger protein 787", "gene_name": "ZNF787", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPTKLSPSPSAAPAGPPPRPRPPAPYICNECGKSFSHWSKLTRHQRTHTGERPNACADCGKTFSQSSHLVQHRRIHTGEKPYACSECGKRFSWSSNLMQHQRIHTGEKPYACPDCGRSFTQSKSLAKHRRSHSGLKPFVCPRCGRGFSQPKSLARHLRLHPELSGPGVAAKVLAASVRRAKAPEEAAAADGEIAIPVGDGEGIIVVGAPGEGAAAAAAMASTGARAPGPRSRRAPAPKPYVCVECGKGFGHGAGLLAHQRAQHGDGLGAAGGEEPAHICVECGEGFVQGAALRRHKKVHAVGAPSVCSHCGQNYYRAGGDDDDEDDDEEAAGGRCSECRGGEGR", "length": 384 }, "evidence": [ { "id": "F1RMK7", "url": "https://omabrowser.org/oma/group/F1RMK7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZDN6-1", "protein_name": "Zinc finger protein 787", "gene_name": "Zfp787", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELREEAWSPGPLDSEDQQMASHENPVDILIMDDDDVPSWPPNKLSPPQSAPPPGPPPRPRPPAPYICTECGKSFSHWSKLTRHQRTHTGERPNACTDCGKTFSQSSHLVQHRRIHTGEKPYTCPDCGRSFTQSKSLAKHRRSHSGLKPFVCPRCGRGFSQPKSLARHLRLHPELSGPGVAAKVLAASVRRAKAPEEATAADGEIAIPVGDGEGIIVVGPPGDGAAAAAALAGVGTRATGTRSRRAPAPKPYVCIECGKGFGHGAGLLAHQRAQHGDGLGAVGSEEPAHICVECGEGFVQGAALRRHKKIHAVGAPSVCSSCGQSFYRAGGEDDGEDQSVAARCAECRGGEAR", "length": 353 }, "evidence": [ { "id": "F1RMK7", "url": "https://omabrowser.org/oma/group/F1RMK7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DD87-1", "protein_name": "Zinc finger protein 787", "gene_name": "ZNF787", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMK9", "url": "https://www.uniprot.org/uniprotkb/F1RMK9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RMK9", "url": "https://www.uniprot.org/uniprotkb/F1RMK9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": 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"tr|F1RML9-1|F1RML9_PIG Isoform 1 of Chromosome 9 C11orf42 homolog OS=Sus scrofa OX=9823 GN=C9H11orf42 PE=4 SV=1 CANONICAL=F1RML9-1" }, "locus": { "chromosome": "9", "start_pos": 3469512, "end_pos": 3464559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015985.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015985.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015564.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015564.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RML9", "url": "https://www.uniprot.org/uniprotkb/F1RML9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513748", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513748", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3YVJ1-1", "protein_name": "Predicted gene 5901", "gene_name": "Gm5901", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLVSSPHLLTLDEADATWALIKDKVIEERFGSNVVAVPFLSDAAYYDLLGVLVKQSRPAHTRLALPGRQGRRALKSVGLLPNLLEQAGSEGIFAHCTREYSPNGRAETAYEEMRMMDGQPCRIRLHMGGLRKKVAFLLLPPGQVSLQQNLPWLRSTHSIYVIYQVFSCTWLQLGLLPTAREPQLIRLQRSLPIAFSCLKFSLQPKGVLGPQKSLTKDPLPQGANWVRPSLSIISTLAPTSVSADTHEVADVPPPVPAPPTPPPQEGPEGRPTRFSHKGRNPFRRGPYMLSENWLFSPRNPPPGAQGGGPGDPDRHSMSLPLLQGLSSEFDSDE", "length": 333 }, "evidence": [ { "id": "F1RML9", "url": "https://omabrowser.org/oma/group/F1RML9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1BJG7-1", "protein_name": "Chromosome 15 C11orf42 homolog", "gene_name": "C15H11orf42", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLVGTPHLLTLDEADATWTLIKDKVIEERFGPNVVAVPFLSDAACYDLLGVLVKQSRPAHSRLALPGRQGRRALQPVGLLPNLLEQAGSEGAFAHCTREYSPNSRAEITYEEMRLLDGQPCRIHLHMGGLRKKMAFLLLPPGQVSLQPSLPWLRSTHSIYIIYQVFSCSWLQLGLLPTAHEPQLLRLQRSLPIAFSCLKFSLQPKGVLGPQKPLIKDPLPQGASWARPNLSIMPPPAPTSASDDIPEAADVPQPVPAPPTPPPQEGPECRPTRFSYKGRNPFRRGPQMLSENWLFSPRNPPPGAQGGGPGDPDRHSMSLPLLQGLSSEFDSDE", "length": 333 }, "evidence": [ { "id": "F1RML9", "url": "https://omabrowser.org/oma/group/F1RML9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8N5U0-1", "protein_name": "Uncharacterized protein C11orf42", "gene_name": "C11orf42", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLVGTPNLLTLDEADATWTLIKDKVIEEHFGPNAVAVPFLSDAACYDLLGVLVKQSRPAHTRLALPGRQGRRALKPVGPLPSLLEQAGSEGAFAHCTREYSPNGRAERAYEETRMLDGQPCKIRLHMGDLRKKVAFLLLPPGQVSLQQTLPWLRSTHSIYVIYQVFSCSWLQLGLTSTAREPQLLRLLRSLPVAFSCLKFSLQSKGVLGPQKPLTKDPLPHGANWVRPNLSIMPPLAPTSAPADTTEAADVPPPVPAPPTPPPQEGPEDKPTRFSYKGRNPFWRGPQILSENWLFSPRSPPPGAQGGGPRDPDGHSMSLPLLQGLSSEFDSDD", "length": 333 }, "evidence": [ { "id": "F1RML9", "url": "https://omabrowser.org/oma/group/F1RML9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1RML9", "url": "https://www.uniprot.org/uniprotkb/F1RML9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { 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"NLRP9", "type": "synonym", "evidence": [ { "id": "XP_005664912", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664912" } ] } ], "protein_names": [ { "name": "NACHT, LRR and PYD domains-containing protein 9 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005664912", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664912" } ] }, { "name": "NLR family pyrin domain containing 9", "type": "synonym", "evidence": [ { "id": "F1RMM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMM7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NLRP9", "url": "https://www.uniprot.org/uniprotkb/F1RMM7", "locus": { "chromosome": "6", "start_pos": 59974270, "end_pos": 59949004, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003307", "url": "https://www.ensembl.org/id/ENSSSCG00000003307" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003307", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003307", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08320", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08320", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519960", "url": "https://www.ncbi.nlm.nih.gov/gene/100519960", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050637", "url": 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"https://www.uniprot.org/uniprotkb/F1RMM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESFFPDFGLLWYLKELKKEEFWKFKELLKEAPQKFELKPIPWTELKKASREHLSRLLGKHYPEKLVWEVTLSLFLQINRKDLWTKAQEEIRHKLNPYRNHMKKKFQLIWEKQTCLHVPEDFYKETILNEYEQLRAVYLTADEAGECSPTVVLQGPEGIGKTTLLRRVMLDWAEGLLWKDRFSFVFFLNGSEMNKITETSLVELLSKDWPDASEPIEDIFSQPRKILLIIDGLEEMECVLTLGDSLASDWEQRQAIHCILSSLLQKKMLPEFSLLIALGKMGMRKYSMFLEQTRCIFLTGFSERQKKLYFSYYFHEDNKSLRAFSLVREKIPLLALCQSPFVCWLVCTCLKWQMERGEDLEIACESITSLYVSFLISAFKSAGDNCPSKQHRARLKSLCTLAAEGMWTCVFLFGPEDLRRNKVSESDTLIWVNLRLLQRSGDYLTFSHPCIQEFCAALFYLFRRPKDMPHPAIGSVTQLVAAAVNEARTLLSWMGIFLFGFSTEKTVSMLEASFGFPLSREIRQEITQSLETLSQCEPIEDVVAFEELFNCLFEAREQDFVTQVMNFFDDFNIYIGSLEQLVVSSFCLKHSSNLKKFHLCVENIFSEESGSVSIDVEKLSFWRDFCSALTTSENFELLDLDSCQFNKASLGILCKMLAQPTCKLQKFVYNFASDIASSLDFFKVVLHNPHMKYLNLYGTSLSCMDVRQLCEALRHPMCSIESLVLGKCDITEDSCEDLASVLVHNKKLRLVSLVDNALKDQGVMVLCEALKNPDCALETLLLMHSCLTSVACDHISQALLCNSSLTLLDLGLTYLEDDGVKSLCQVLKHPDCSLQHLWLMGCYLTSICCADLAAVLTQNEKLKTLKLGSNKLYDAGAKQLCEALKHPHCKLENLGLEMCDLTSACCEDLASALTICRSLRTLNLEWIKLDLDGAVLLCDALTHPECGLQRLGLNKCSYDEEIQVLLTEAGKNNPHLTVSHNLWTDEHGKIRGITI", "length": 996, "header": "tr|F1RMM7-1|F1RMM7_PIG Isoform 1 of NLR family pyrin domain containing 9 OS=Sus scrofa OX=9823 GN=NLRP9 PE=3 SV=3 CANONICAL=F1RMM7-1" }, "isoforms": [ { "isoform_ac": "F1RMM7-1", "url": "https://www.uniprot.org/uniprotkb/F1RMM7/entry", "sequence": { "sequence": 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"length": 996, "header": "tr|F1RMM7-1|F1RMM7_PIG Isoform 1 of NLR family pyrin domain containing 9 OS=Sus scrofa OX=9823 GN=NLRP9 PE=3 SV=3 CANONICAL=F1RMM7-1" }, "locus": { "chromosome": "6", "start_pos": 59973853, "end_pos": 59949004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003671.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003671.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003586.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003586.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZAD9-1", "protein_name": "NLR family, pyrin domain containing 9", "gene_name": "Nlrp9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDTSGYGLLKHLRKLSDGEFWSFKELLRKEPEKFKLKPISWMKIENASKEELVMLLNTHYPKQAWDMALSLFLQVNREDLSIMAQKKRRYKQTKYKKFMKTTFQSIWTLESNICIPDRSYHLIVEHQYRKLQNIFDSESEPVTAVVTGPTGEGKTVFLRKAMLDWASGILWQNRFQYVFFFSVLSLNNTTELSLAELISSKLPESSETLNDILSDPKKILFILDGFDYLKFDLELRTNLCNDWRKILPTQIILSSLLQKIMLPESSLLLELGHISLPKIFPLLQYPRDITIQGFSERCLKTYFISFFNTEKGIEVFENLKSNQMLKLCSNPYLCWMFCSCLKWQFDREEEAYFQAKTDSVFFTSFMVSAFKSAYASNPPKQNRAQLKSLCTLAVEGMWKQLFVFDSEDLRRNGISESDKAVWLRMKFLQNHDNHIVFYHPTLQLYFASMFYFLKQDKDTHVPVIGSIPQLLRKIYARDHTQWLQIGIFLFGLATEQVASLLKPYFGFIQHRDVRQEVMRYLKSLSQRECCEKLERPQNLFACLRDNKEEKFVREVVDLFEEITVDITNSHVLSIIANHLQKSSKLKKLHLHIQKRVFLEIHDPEYSDSETFTQDKKNAAEYWKKLCHIFVNLHVLDLDSCNFNKQVIEELCNVLSPSPKIPLMAFKLESLLCSFMTNFGDGSLFHTLLQLPHLKYLNLYGTNLSNSRIENLCSALRRSTCKVEELLHSEMSFPLSTDFIVSHKFGLGKCDISSEACGIIATSLMNSKVKHLSLVENPLKNKGVMSLCEMLKDPSCVLETLMLSYCCLTFIACGHLYEALVSNKHLSLLDLGSNFLEDTGVNLLCEALKDPNCILKELWLSGCFLTSECCEEISAVLTCNNNLKTLKLGNNDIEDTGVKHLCEALSHPNCKLECLGLDLCKFTSDCCEDLASALTTCKTLNSLNLDWKTLEHSGVVALCEALNHKKCNLKMLGLDKSAFSVESQTLLQAVEKKNNNLSILHYPWVEEERKKRGVRLVWNSKN", "length": 1022 }, "evidence": [ { "id": "F1RMM7", "url": "https://omabrowser.org/oma/group/F1RMM7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MKL3-1", "protein_name": "NLR family pyrin domain containing 9", "gene_name": "NLRP9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAESFFSDFGLLWYLEELKKEEFWKFKELLKQEPLKLKLKPIPWTELKKASRENVSKLLSKHYPGKLAWDVTLNLFLQISRDDLWRKARNEIRQKINPYRSHMKQKFQVLWEKEPCLLVPEDFYEETTKIEYELLSTVYLDAFKPGESSPTVVLHGPEGIGKTTFLRKVMLEWAKGNLWRDRFSFVFFLTGREMNGVTDMSLVELLSRDWPESSEPIEDIFSQPERILFILDGMEELKFDLDCNADLCEDWEQPQSMQVVLQSLLQKQMLPECSLLLALSKMGMRKNYSLLKHMKCIFLLGFSEHQRKLYFSHYFQEKDASSRAFSFVREKSSLFVLCQSPFLCWLVCTSLKCQLEKGEDLELDSETITGLYVSFFTKVFRSGSETCPLKQRRARLKSLCTLAAEGMWTCTFLFCPEDLRRNGVSESDTSMWLDMKLLHRSGDCLAFIHTCIQEFCAAMFYMFTRPKDPPHSVIGNVTQLITRAVSEHYSRLSWTAVFLFVFSTERMTHRLETSFGFPLSKEIKQEITQSLDTLSQCDPNNVMMSFQALFNCLFETQDPEFVAQVVNFFKDIDIYIGTKEELIICAACLRHCHSLQKFHLCMEHVFPDESGCISNTIEKLTLWRDVCSAFTASEDFEILNLDNCRFDEPSLAVLCRTLSQPVCKLRKFVCNFASNLANSLELFKVILHNPHLKHLNFYGSSLSHMDARQLCEALKHPMCNIEELMLGKCDITGEACEDIASVLVHNKKLNLLSLCDNALKDDGVLVLCEALKNPDCALEALLLSHCCFSSAACDHLSQVLLYNRSLTFLDLGSNVLKDEGVTTLCESLKHPSCNLQELWLMNCYFTSVCCVDIATVLIHSEKLKTLKLGNNKIYDAGAKQLCKALKHPKCKLENLGLEACELSPASCEDLASALTTCKSLTCVNLEWITLDYDGAAVLCEALVSLECSLQLLGLNISSYDEEIKMMLTQVEEMNPNLIISHHLWTDDEGRRRGILV", "length": 996 }, "evidence": [ { "id": "F1RMM7", "url": "https://omabrowser.org/oma/group/F1RMM7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q66X22-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9B", "gene_name": "Nlrp9b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGSSGYGLLKLLQKLSDEEFQRFKELLREEPEKFKLKPISWTKIENSSKESLVTLLNTHYPGQAWNMMLSLFLQVNREDLSIMAQKKKRHKQTKYKKFMKTTFERIWTLETNTHIPDRNYHLIVEVQYKALQEIFDSESEPVTAIVAGTTGEGKTTFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSTLPESSETVDDILSDPKRILFILDGFDYLKFDLELRTNLCNDWRKRLPTQIVLSSLLQKIMLPGCSLLLELGQISVPKIRHLLKYPRVITMQGFSERSVEFYCMSFFDNQRGIEVAENLRNNEVLHLCSNPYLCWMFCSCLKWQFDREEEGYFKAKTDAAFFTNFMVSAFKSTYAHSPSKQNRARLKTLCTLAVEGMWKELFVFDSEDLRRNGISESDKAVWLKMQFLQTHGNHTVFYHPTLQSYFAAMFYFLKQDKDICVPVIGSIPQLLGNMYARGQTQWLQLGTFLFGLINEQVAALLQPCFGFIQPIYVRQEIICYFKCLGQQECNEKLERSQTLFSCLRDSQEERFVRQVVDLLEEITVDISSSDVLSVTAYALQKSSKLKKLHLHIQKTVFSEIYCPDHCKTRTSIGKRRNTAEYWKTLCGIFCNLYVLDLDSCQFNKRAIQDLCNSMSPTPTVPLTAFKLQSLSCSFMADFGDGSLFHTLLQLPHLKYLNLYGTYLSMDVTEKLCAALRCSACRVEELLLGKCGISSKACGIIAISLINSKVKHLSLVENPLKNKGVMSLCEMLKDPSCVLQSLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDTGVNLLCEALKDPNCTLKELWLPGCFLTSQCCEEISAVLICNRNLKTLKLGNNNIQDTGVRQLCEALSHPNCNLECLGLDLCEFTSDCCKDLALALTTCKTLNSLNLDWKTLDHSGLVVLCEALNHKRCNLKMLGLDKSAFSEESQTLLQDVEKKNNNLNILHHPWFEAERNKRGTRLVWNSRN", "length": 1003 }, "evidence": [ { "id": "F1RMM7", "url": "https://omabrowser.org/oma/group/F1RMM7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTR0-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9", "gene_name": "NLRP9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAESFFSDFGLLWYLKELRKEEFWKFKELLKQPLEKFELKPIPWAELKKASKEDVAKLLDKHYPGKQAWEVTLNLFLQINRKDLWTKAQEEMRNKLNPYRKHMKETFQLIWEKETCLHVPEHFYKETMKNEYKELNDAYTAAARRHTVVLEGPDGIGKTTLLRKVMLDWAEGNLWKDRFTFVFFLNVCEMNGIAETSLLELLSRDWPESSEKIEDIFSQPERILFIMDGFEQLKFNLQLKADLSDDWRQRQPMPIILSSLLQKKMLPESSLLIALGKLAMQKHYFMLRHPKLIKLLGFSESEKKSYFSYFFGEKSKALKVFNFVRDNGPLFILCHNPFTCWLVCTCVKQRLERGEDLEINSQNTTYLYASFLTTVFKAGSQSFPPKVNRARLKSLCALAAEGIWTYTFVFSHGDLRRNGLSESEGVMWVGMRLLQRRGDCFAFMHLCIQEFCAAMFYLLKRPKDDPNPAIGSITQLVRASVVQPQTLLTQVGIFMFGISTEEIVSMLETSFGFPLSKDLKQEITQCLESLSQCEADREAIAFQELFIGLFETQEKEFVTKVMNFFEEVFIYIGNIEHLVIASFCLKHCQHLTTLRMCVENIFPDDSGCISDYNEKLVYWRELCSMFITNKNFQILDMENTSLDDPSLAILCKALAQPVCKLRKLIFTSVYFGHDSELFKAVLHNPHLKLLSLYGTSLSQSDIRHLCETLKHPMCKIEELILGKCDISSEVCEDIASVLACNSKLKHLSLVENPLRDEGMTLLCEALKHSHCALERLMLMYCCLTSVSCDSISEVLLCSKSLSLLDLGSNALEDNGVASLCAALKHPGCSIRELWLMGCFLTSDSCKDIAAVLICNGKLKTLKLGHNEIGDTGVRQLCAALQHPHCKLECLGLQTCPITRACCDDIAAALIACKTLRSLNLDWIALDADAVVVLCEALSHPDCALQMLGLHKSGFDEETQKILMSVEEKIPHLTISHGPWIDEEYKIRGVLL", "length": 991 }, "evidence": [ { "id": "F1RMM7", "url": "https://omabrowser.org/oma/group/F1RMM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "pmid": "" }, { "name": "canonical inflammasome complex", "id": "GO:0061702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061702", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "F1RMM7", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 803, "end_pos": 805, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" }, { "id": "PS50837", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50837" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NACHT", "eco_id": "ECO_0000259", "start_pos": 150, "end_pos": 348, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RMM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMM7" }, { "id": "PS50824", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50824" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pyrin", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 94, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 190, "end_pos": 192 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 803, "end_pos": 805 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMQ6-1", "uniprot_ac": "F1RMQ6", "uniprot_id": "F1RMQ6_PIG", "mass": { "chemical_mass": 279210.0, "monoisotopic_mass": 279210.0 }, "refseq": { "ac": "XP_020917982", "name": "interferon-induced very large GTPase 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917982" }, "gene_names": [ { "name": "LOC110255360", "type": "synonym", "evidence": [ { "id": "XP_020917982", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917982" } ] } ], "protein_names": [ { "name": "VLIG-type G domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1RMQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced very large GTPase 1-like", "type": "synonym", "evidence": [ { "id": "XP_020917982", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917982" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMQ6", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000033089", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033089", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255360", "url": "https://www.ncbi.nlm.nih.gov/gene/110255360", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255360", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255360", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AMWSITP", "url": "https://omabrowser.org/oma/group/AMWSITP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMQ6", "url": "https://www.orthodb.org/?gene=F1RMQ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25974", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25974", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020917982", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020917982", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RMQ6", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMQ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIIESTTDEPLLRGKKGKSLQEMLREAGLAVEYWLPKLQEHLGVTSAQALQHLEEQDLQKLKSQAQHPWEKRALDKLLNLSHSNRLSEFWESQVETRTKRQKQAEQALQELRGLLSEGRQRNAEAVRKKEAELRQAMEIPKEFWPPPENSLKEVIENMQRQLHLVEGRMAHRQNLPERELVRHASGGLALQGIYKTSDENGLIEKREELLSVPKEFSLCGPQQGTRMETKEFTSSQAESMFTETMEKLGFSVTASAKGGAWGWSLESSTDHRKHSESKETQHSQAELSYFCSTKFSYIPLASYHFPIDQLHFSKAALQELKCIEDLLGQPEDPDRLPLLRRRTEDFFRRFGSHADQGPLHLGGIYWWKAVSEGFQREQLQEVKQQSAEALDAYVTGSYSGFGVNVAAGVDVSDAHSKTGSQRANVQNLQTKVQLSVAHTGGPPEANSLLEWKAGLVASNQTWCVIDRGLQLVPIWDMILFNHRSDFKDPLQVANCLKDSYAALTGLTAQVQEGEELLSAQEEARVFLEDVRSWEVSDPEEQLKKLRNFRQTLSHKTKSHDTWTNICLTDSGLQNFLVNTVNFCRKSSISETKFIKSQLRSLLDPHVYRGSNFPQVHSIMQWIYQPEPEQEHVTITQFSELIETFKKTQDDLLEVKATSESTESVEEAQRKATYEVSMSLGCFFNHLQEMGQADTYILLLSIAAGAGYHVVNNTFQCLLGYDDIDFLLHTMQTAQDKYQELKTICDYRAQAFLVLTGLTATAGIKAVSPEEKKQRLALIRHHMGQSFSKEVIHVLTKAGTGPNWEILEKDLRLLVDGDYEATVPSLQMEEVRKQLQSLLHEDKEPRELHDDENNRPEVMENGAFLELLQRLGLEHSYPKKMSRSNFHLIHKTSVYNTQPCSERELPFYFLQKLMMLDYGLRYLVIRDEEYTEEQVCSSNTGQENADFDPYEDLVEDKDGPTRPSATAVKPHVHPMDIQMAILHCADDFARQYILAKLAICQFALPLLIPHPCNAQIQFSLWSLRQIRRSWQQAGKPTEQEKDNYKNQQMCRVSTPIVSFIRVGKGFSASKSQIMNSLLSQRKHDVFFHRHCKGSSRDCLLMAGVVEVTWFCPGAGDEDRFDNCLTFTNLHGDAKEHKQQLTFLQEVSSLIVVLMSTSDDNQESRKVVRALCQSPKPLICLLDDKEKAMSSTSGPRVRIGIRNRNEAEFIEELATTIRGLLKASDTALSLENCAQVARKQGMLIDEDQEDCKEAKTKAEVLMALLEDMEIAQMKENLLPLQGELWQLWCKKDKELYHLREKGNRSIEQHKSDIETDKQMIRLRQLRKAFPLNDLMHSVLGILQKHSETHTKLYFLQWLSVFLDNLTAGHLEKLNEKKKQLWSRVQKEKREAQKSSSLKGLQNELEAISRKISDCTLGVEQILRELGQIYEALEEGFSTKDVSFLSLPHMAADLMLSGVPIELMDGDASYVPLRWVAAVFDKVSEKLGDKRLFVLSILGLQSSGKSTLLNAMFGLQFTVSAGRCTRGAYMQLLKVEETFTDELGFDFLLVVDTEGLRAPELSNKSQNHDNELATFVIGLGNLTVINIFGENPSEMQDILQIAVQAFLRMKQVKISPSCLFVHQNVGEVTAKDQTMEGRRRLEQRLDEMAATAAEEEQCSDVGRFSDVIKFDVNTHVYYFAHLWDGNPPMAPPNPRYSHNAQELKSRILATAKQEARGSIMKISDVKFRVQDLWKALLNENFVFNFRNTREVTAMSKLETMYNKWTWELRSHVLSLQDQLINQIQNGKIHTLEAHTLAAPVTDKYEAIKQELEKYFSEDPDSEVLVQWKGNFENKLMILKESLISDSQRKAKELLRFKKNQEKLDNKKSGYEKELLEKSRNLALTVKGTEWSEEELREKFNPLWKKWVYNVSSTLPPVTEPAIEVDAENILLDYFKKERKMVDKLKKDWGKEFMIKYDKHVQMKTKYWNLFKMTLEAQDEASIHMTTDCILSKFNEMINNICRQKHDYDPIYFHEILKIIDEEVKSAPTQERYTFTRNYEIDLSLCLFQRASVKFKEMHKAFKRANDPVNYLESKKDDFFMSFKISCQGATSIKTFVDFLWNKLTPAVSNTIRKKMAPQIAGDMRATCPAFSGNRSNLEKHILISLAQEENFNNYWQYLHNPQSFVKNYIENQIKSYCSDKGSEKMKTFLKMSLDAIKNDILSAIHEATEIAKDKRSTASGWLDLFCDKLRSDLIFPRKDLISIEHQEIKDMEFLKEAMCKALDPEMNRVEQNCLYMPVEEMVPEIQKMLSEHLSGCWKQCPCCRAICTNTIPTHDGDHSVPFHRPQAVSGISWYKTNNFVLDYCTSLVASDCFLVFDDGRQIPYKNYRQAGGDYATWSITPDTSAQPYWKWFVCHFRSKLEEKYQKRFIDKGKIPDAWEKITKQNVLDDLK", "length": 2429, "header": "tr|F1RMQ6-1|F1RMQ6_PIG Isoform 1 of VLIG-type G domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1RMQ6-1" }, "isoforms": [ { "isoform_ac": "F1RMQ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6/entry", "sequence": { "sequence": "MDIIESTTDEPLLRGKKGKSLQEMLREAGLAVEYWLPKLQEHLGVTSAQALQHLEEQDLQKLKSQAQHPWEKRALDKLLNLSHSNRLSEFWESQVETRTKRQKQAEQALQELRGLLSEGRQRNAEAVRKKEAELRQAMEIPKEFWPPPENSLKEVIENMQRQLHLVEGRMAHRQNLPERELVRHASGGLALQGIYKTSDENGLIEKREELLSVPKEFSLCGPQQGTRMETKEFTSSQAESMFTETMEKLGFSVTASAKGGAWGWSLESSTDHRKHSESKETQHSQAELSYFCSTKFSYIPLASYHFPIDQLHFSKAALQELKCIEDLLGQPEDPDRLPLLRRRTEDFFRRFGSHADQGPLHLGGIYWWKAVSEGFQREQLQEVKQQSAEALDAYVTGSYSGFGVNVAAGVDVSDAHSKTGSQRANVQNLQTKVQLSVAHTGGPPEANSLLEWKAGLVASNQTWCVIDRGLQLVPIWDMILFNHRSDFKDPLQVANCLKDSYAALTGLTAQVQEGEELLSAQEEARVFLEDVRSWEVSDPEEQLKKLRNFRQTLSHKTKSHDTWTNICLTDSGLQNFLVNTVNFCRKSSISETKFIKSQLRSLLDPHVYRGSNFPQVHSIMQWIYQPEPEQEHVTITQFSELIETFKKTQDDLLEVKATSESTESVEEAQRKATYEVSMSLGCFFNHLQEMGQADTYILLLSIAAGAGYHVVNNTFQCLLGYDDIDFLLHTMQTAQDKYQELKTICDYRAQAFLVLTGLTATAGIKAVSPEEKKQRLALIRHHMGQSFSKEVIHVLTKAGTGPNWEILEKDLRLLVDGDYEATVPSLQMEEVRKQLQSLLHEDKEPRELHDDENNRPEVMENGAFLELLQRLGLEHSYPKKMSRSNFHLIHKTSVYNTQPCSERELPFYFLQKLMMLDYGLRYLVIRDEEYTEEQVCSSNTGQENADFDPYEDLVEDKDGPTRPSATAVKPHVHPMDIQMAILHCADDFARQYILAKLAICQFALPLLIPHPCNAQIQFSLWSLRQIRRSWQQAGKPTEQEKDNYKNQQMCRVSTPIVSFIRVGKGFSASKSQIMNSLLSQRKHDVFFHRHCKGSSRDCLLMAGVVEVTWFCPGAGDEDRFDNCLTFTNLHGDAKEHKQQLTFLQEVSSLIVVLMSTSDDNQESRKVVRALCQSPKPLICLLDDKEKAMSSTSGPRVRIGIRNRNEAEFIEELATTIRGLLKASDTALSLENCAQVARKQGMLIDEDQEDCKEAKTKAEVLMALLEDMEIAQMKENLLPLQGELWQLWCKKDKELYHLREKGNRSIEQHKSDIETDKQMIRLRQLRKAFPLNDLMHSVLGILQKHSETHTKLYFLQWLSVFLDNLTAGHLEKLNEKKKQLWSRVQKEKREAQKSSSLKGLQNELEAISRKISDCTLGVEQILRELGQIYEALEEGFSTKDVSFLSLPHMAADLMLSGVPIELMDGDASYVPLRWVAAVFDKVSEKLGDKRLFVLSILGLQSSGKSTLLNAMFGLQFTVSAGRCTRGAYMQLLKVEETFTDELGFDFLLVVDTEGLRAPELSNKSQNHDNELATFVIGLGNLTVINIFGENPSEMQDILQIAVQAFLRMKQVKISPSCLFVHQNVGEVTAKDQTMEGRRRLEQRLDEMAATAAEEEQCSDVGRFSDVIKFDVNTHVYYFAHLWDGNPPMAPPNPRYSHNAQELKSRILATAKQEARGSIMKISDVKFRVQDLWKALLNENFVFNFRNTREVTAMSKLETMYNKWTWELRSHVLSLQDQLINQIQNGKIHTLEAHTLAAPVTDKYEAIKQELEKYFSEDPDSEVLVQWKGNFENKLMILKESLISDSQRKAKELLRFKKNQEKLDNKKSGYEKELLEKSRNLALTVKGTEWSEEELREKFNPLWKKWVYNVSSTLPPVTEPAIEVDAENILLDYFKKERKMVDKLKKDWGKEFMIKYDKHVQMKTKYWNLFKMTLEAQDEASIHMTTDCILSKFNEMINNICRQKHDYDPIYFHEILKIIDEEVKSAPTQERYTFTRNYEIDLSLCLFQRASVKFKEMHKAFKRANDPVNYLESKKDDFFMSFKISCQGATSIKTFVDFLWNKLTPAVSNTIRKKMAPQIAGDMRATCPAFSGNRSNLEKHILISLAQEENFNNYWQYLHNPQSFVKNYIENQIKSYCSDKGSEKMKTFLKMSLDAIKNDILSAIHEATEIAKDKRSTASGWLDLFCDKLRSDLIFPRKDLISIEHQEIKDMEFLKEAMCKALDPEMNRVEQNCLYMPVEEMVPEIQKMLSEHLSGCWKQCPCCRAICTNTIPTHDGDHSVPFHRPQAVSGISWYKTNNFVLDYCTSLVASDCFLVFDDGRQIPYKNYRQAGGDYATWSITPDTSAQPYWKWFVCHFRSKLEEKYQKRFIDKGKIPDAWEKITKQNVLDDLK", "length": 2429, "header": "tr|F1RMQ6-1|F1RMQ6_PIG Isoform 1 of VLIG-type G domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1RMQ6-1" }, "locus": { "chromosome": "9", "start_pos": 2979214, "end_pos": 2971928, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055407.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055407.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042585.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042585.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMQ6", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255360", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255360", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JTA4-1", "protein_name": "GTPase, very large interferon inducible 1", "gene_name": "Gvin1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASAKYIPDETQLRSRRRHDLQEMLTEVGLSVDYWLPKHQEELGVTSAQALHYLDKRDLQTQQTWEKRALERLLDLSHPNSVAELHETPEEMIKTRQRQAGQALHALKALQSEGKCREEEAVRRREAELRQAMEIPEECWPVAEVSLKDITEIMEKHLSHMEQTLALSQNLSDGDLVRWASGGLALQGIYKSSHQKSLIQKREELLSVPKQFSLVGPERGMWIETKEFSSFQEQATFTHTIEMLGFSPNSLVKGEGWGLSLEAGMGQNKQTETDDTHKSHSEQSYFCSAKFSYVPLATCHFHINHLQLSKAALQELKSIEELLEQTTHPDGFPLLRHRTENFFHRFGSHANQGPLHLGGIYCWKAISEGFKSEQLDDVKKQAEESLNMYIKGSYSGFGVKVGASVNMSDSHSKTASQSTTHENLKTKVQLSVAQTGGPAEANGIAQWTAGLVASNQTWSVIDRGLQLVPIWDIILSSHRTDFKDALQVANCLKDNYTALTGLAAQIQEGEEFLTAREEARLFLEDVKCWEVSDPEEQLNTLIHFMQTLSQKIKSYTIWINTCLTDWNLQNFLISIVNFCKNVPTNIIQFIKSQLCSLLEPHVYKVTNFPGAQYIIEWTNQSESKEEDIKITSFSEFIRTLKKTHTTLMEVNFKSESPETVEEAKRTATYEVTTALSSFMKYLRETEQPDMQLLVLTIAAGAGYQLVNSIFQHLLGCNELNFLVDQMQSNQHKYQELKNICNYRAQAFLVLTALRTTVEITDISTDDKEQRLTLIKQHMGKLLSEEVAHILTKHGAHHDWENLENDLRLLIDGDYKATTPPLEMDEVKKQLQSLCHEKKQTYKQQSNDNNTKEMIENGPFLDLLQRLGLDHYYPKRMSRADFHLLYKTSVYNSQPRSEKELPFYFLQKLLMLDYGLRHLVFKNDENIKKQISIGSDDYENEDFDPYEDVIKDNDSLSYPSATESWPHIHPMDIQMAIFHCADDLTKQYILSKLSICQYALPLVVPNPNNSQIEFYLWSLRQIRKSWQESSESLQDQSYSHKNQQICRVSTPIVSFIRVGNGLSASKSQIMNSLLSKRKHDVFFHRHCRGSNKNCLMMEGVVEICWFCPAGQGEDIFDKCLTFTNLHGDAKEHCQQLTFLQDVSSLIVILMSASDNNKENQNFVRHLCQSPRPLICLIDDKEKVIANNSGKRMRIGIKNRNEAELTEELTNAIKHFLELSNTALSLEDCSQIARKQGFLIDEDQRDCKEAKEKAQIMMALLEECKLSQTKENLLPLQGQLWHLWCKKDKEFYHLREKGNRSIEQHKSEIETDKRTIRHQQLEKAFPLNDLMRSVLQLLQEYSETHNNLYFLQWLTLFFDNLTTEHLEKLHEKQRSLWLMVQREKQRAQKNSSLTLWQDQIETISTEIHDCTLGTEHLLREVGQIYEALEETSSSIENLSVCLPQIAADLMIAGVPIELMDGDASYVPLKWVAAVFDKISEKVGDKRLFVLSVLGLQSSGKSTLLNALFGLQFTVSAGRCTKGAYMQLLKVEETFTEELGFDFVLVVDTEGLRAPELNNKSKNWDHELATFVIGLGNLTLINIFGENPSEIQDILQISVQAFLRMKQVKISPSCLFVHQNVGEVTVKDQTMEGRRRLEQKLDEMTALAAKLEECSNVTQFSDVIKFDANTHVYYFAHLWDGNPPMAPPNLRYSYNVQELRNAILSTAQQESRGRILKISNVKFRVQDLWKALVTENFIFSFRNTQELLAMSKLETMYNHWTWELRSHVLDLQNQLNNQIQNGKISTLTFSLLEDPLSKKYKTIKQEFDKYFEEDPDSETLVQWKANFEHKLLILKDALISDTRRKGDEFISLKRSQETLNNQKSQYENELLERSRKLALSVNGKELTDEELYEKFNQLWTNWIHNVSSNVPHVTEPNIDLDSENILLEYFNKDKNIGERLKIKSGENFEIIYAKHIQMKKIYGVLPESLETYHKESINEITNNIDLKVTEALKNIWKQKRDYSQNYFHEILRIIENELKSEHCVKDYTFTRDYNIDLSLCLFQRASKEFKEIHEAFKSANDPVNYLERKKDDFFMSFKISCQGATSITSFVDFLWLKLTPAISVTIWEIIGPKVAGDMQATFPEFNGNRANLERHILYSLAEEENFDKYWQYLHHPEAFFRNYIRDHIRRYCLEKKGKKIKTFLKISLGDIKTAILSAIHESTAVAKDKGSTASGWLDLFCDHLGSNLVFPRRDLVSIEHQEITDTEFLKEAMSTALDPAMRKVEEDCSSKQMDEIIPDIEKILSEHLCGCWKQCPFCKAICTNTIPQHEGDHSVQFHRPQAVSGWHKHKTDYFVIDCCTSSVASNHSFILHDLQKFPYKKYREAGGDFAMWSITPDSSTQPYWKWFVCHFKSELENKYGKKFINLGSIPDLWTKITKQDVLDDLRNNTCHKYDTRWAADFSL", "length": 2440 }, "evidence": [ { "id": "F1RMQ6", "url": "https://omabrowser.org/oma/group/F1RMQ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Y6R0-1", "protein_name": "GTPase, very large interferon inducible pseudo 1", "gene_name": "GVINP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESQEERAEDLEKANLAKQLLAETFQREGLDEEYWLPKLLKVLGVKSKEALKHLQYEDYLKLECEVQYPWEKMALRKLLQITDNKATVEELQKQRLEMMKQRQEEAKRALQELKEMHHSHSHSKEMIRQKEEALWQAMDIPREYWAPPEKALEDVLASIQKQLEQQEMSLGRSENVSDKEVLRRASGGLALQGIYQTSGLADMLAKREQLIRVPSGFKLAGPEQGSLLERKEFSSSAAEANFTKSMEQLGFSLSISAKARFWGFSVEGGEDYSSSSHKEDTHHSRSEQTYICTTKYHYIPTASCYFQKDQLRLSDGALRELQYTEDLLSVTQEADRLNMLKSRCARFFSRFGSHVNQGPLHFGGIFWWKASSKGFRAEQREEMKQRASEALNCFVRASFAGSVGGNVDVSKSSLQASLGRSDKGSSHTVIQLSVTNTGGPSETDSLAQWKCGLVASNTTWFVIDRGFQLIPVWDIILSNHSSDFKSAHQMSSSLRAAYEALTNHCVGTVFGEELGSAVEEARAFLERMKTWEVTADERKLLMLIDLKQDLSEKTKNPSVWINVCLSDKALQEFLVKTVLFCQKSPPENITYIKSLLQVLLDPHIYSVKDFPRASFIMQWIFKTDETDVKFPEIPHIPEIQDLIKTLLQMKEHIQEVTYSPATPVSAIHEAKIKATQTISLAVYTLLQYLQERAEKDMELLVLLVTTTIGYQVESSTFQYLLGCPEINFMAKEMQTAYDEYQSLKEQDDYRAEAFLLLTGLTITSESNEVSPERKSDRLAFMEDKMKNSWSAEIENLLKKQNVLKDWEVLERDLRSYISGQMEDTSVDLKKHSIIKDMEETLQDIPPPSPAIPKSVDSKSKTNQASANPEFLNLLKRLGLQSYYPRKMGSEDFHIIHKTSVHDSLPSKESELPFYFLQKLLSVDYSVRYLTCKDKSKPEITPAPKATEEEPSDSFDDFFSVLDERAPESATRESHVHPMDLQMAIFHCANDFMRQYISSKLAFCQFALPLLVPNPCTSQIEFPLWSLSQIKKSWKGAAKSGEQTTGSSYTNKLIYQAETPIVSFIRIGSSPSSSKSQLLNALLSKQKHNTFFHRNCKGSTKDCLLMKGVVEISWYCPHGSDDDSFDSCVAFCNLHGDARDHEPQLSFLQEISAVNVVLISESDQSDKKGRKILQDLWQSQRPLVCLFTEKENIAAGRSSQNIRIGIKNRNEAELIGELTETIQDLLEGSCTRSSLDMCLGTARQHGFLVDEDVEECVIAKEKANKLVKLLKGEKLSEIKSKLLPLQGKLWYNWCKRDRELTRLQEKGNKSIEHHRSQIERDKAAIRRKQLQKAFPLNQLMKSVLGFLRSQPASTKKYFLQWMRVFMDDLSSDRLDELKREYHQLWSQILAIKKNEEGNKAKTVMTKRLDSLSNEINDSSVGLEHILREVGQIYEALESTNSKDECILKLPEIAADLMVSGYPIELMDGDASYVPLQWVAAIFDRLIERLGDKRVFVLSVLGIQSTGKSTLLNAMFGLQFNVSAGRCTRGAFMQLIKVDENLQREVNFDYMLVVDTEGLRAIEMANKHSLNHDNELATFVIGIGNMTLINIFGENPSEMQDILQIAVQAFLRMKQVKLSPSCLFVHQNVGEITAKEQNMEGQRRLQEKLDEMTVTAAQQEFCDITCFSDVIRFDVNTHIHYFAHLWEGNPPMAPPNPTYSRNVQELKSKILQAAKKESPGSVLSLSSLKVRISDLWNALRNENFIFSFKNSVEIAAYKKLETSFSQWTWKLRRHILDLQMHLDNKVRNGELEKITTKEIENLVRETSDAITKEVQKFFSEDRDCEILIQWKSSTELKLKELKASLLDETRRKCEKLLEVKRNQSRLDERKSEYEKELLKKSRELALSLKGQELSEKELRRSFNSLWVTWVTEVSSNAPPLEKVDIDVEIESVLIEHFKEPNVAERIIKFPKRTTFTLDEKKHLSIKKLWNKLFSKISESDVSNLQHITDSIIRRVKENIDQKEKDKMDYSRTFIHEILNEVQEGMETVPSSEKYTFTTDYRIDLSVYLCRTAAARFKDMHAAFRKANNPAIYLESKREDFFQCFQISCQGATSITTFADFLCSKIAPGLRLAVYDKTALVIAERMKSEIPDFRGSRANLEACILKYLAQEEKFEKFTHYIRFPADFLESYIQTHVKTYCLDQNGRLVMFLNETLTQYYGTILKAVVASTTVVKDRRDSNKIISLWLDEFCRELGGVLTLPRSDLVGLEHLEITDIEFLNKAMMEALSPLRDHLKEEFARAGLSSFEKQPHKILVEQFAGCKEQCPFCGAVCTNTIPNHDGDHQLVFHRPEFLGGCIWYETDHLVIDICSSSVASDCSFRVGLGKWIPFLNYRDAGHPYSTWKILPDSSMQKYWKWFVSHFRTQLEEFYKGKFRGKGEIPPPWHKITKQEALDELR", "length": 2433 }, "evidence": [ { "id": "F1RMQ6", "url": "https://omabrowser.org/oma/group/F1RMQ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G5E6A5-1", "protein_name": "VLIG-type G domain-containing protein", "gene_name": "LOC101903126", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEDTERQLNIKGELSHRKSLTDRELVRHASGGLALEGIYKTSDQRSLIKKKEELLCVPKDFVLRGPEQGTRMEMKEFTSSQEESKFTQIVEKLGFSVSALAKCGGWGISLKAGMDQSMHSESKKTQQSHSTHSYFCSIKFIYIPLASFYFPVDQLQLSNAALEELKYIENLLSQSEDSDELCLLRHRTEAFFQRYGSHANQGPLHLGGIYWWKAISEGFQKEQLAEVKQQAAEALNIYIKGGYSGFGVNIGTGLDMSDSHLKKASQKTTFQNLQTEVQLSVAQTGGPPEANGFFDWKAGLVANNQTWCVIDRGLQLVPVWDIVLSSHRSDFKDPHKLANCLKAHYTVLNELTAQIQERELLSIEKEARIFLEDVKSWKVFDPEEQLKRLINFMQRLSQKTGSYTTWTNICLKDRGLQNFLVNMVNFCKKSSIYGTTFIKFQLSHLLDPHIYIVTNFPQAHSIMEWIFQSEPKEDNVPITQFSELIEIFKKAQKGLREVKANSESTELVEEAQRKLTYEVSLSLGCFLKYLRETGKPDTHILLLLIASGAGYHVVDNIFQYLLGHDELDFLLEKTQTAPNKYQELKNICNYRAQAFLVLTGLTATAGIKAVSQEEKTQRLALIKHHMGQSLTKEVVHVLTNHGDHDWQNLDKDLRLLIDGKYEDAVSSLQVEEVIKELQSVFHEKKEPHEPHDNEKKKKEVIENGAFQDLLQRLGLEHYYPRKMSRANFQLIHKTSVYNTQPCSERELPFYFLQKLLMLDYGLRYLIIKHEDYTENQVYSSTSNQEKEAFDPYEDLPEESAHPTKPSAATNARLYVHPMDVQMAILHCADDFGRQYILDKLSICQFALPLLIPNPCNAQIEFSLWSLRQIRRSWQQVGKSIKEEKDNYTNQQMCRVSAPIVSFIRVGTGFSASKSQIMNCLLSERKHDVFFHRHCNGSSRDCLLMGGVVEVAWFCPGGEEQDRFDNCLTFTNLHGDAKEYEKQLAFLKEVSSIIVVLMSTSDDNKGNRKIVRDMCQSSKPLIFLLDDKGKITVNDSGSRVRIGIRNRNEAELIGELTTTIRRLLELCNTALSLENCAQVARKQGMLIDEDQRDCKEAKEKAEAIITLLREMEISQVKENLLPLQGKLWQLWCKKDKELYHLREKGNRSIEQHKSETETEKQMIRLEQLRKAFPLNALMCSVLEILQNHSETHTKLYFLQWLNVALDNLTARHLENLNEKKKALVQKEKQEAPKSSSLKDWQNEIEAISREINDCTLGIEHILREAGQIYEALEEASPMKDTLFLSLPHIAADLMISGVPIELMDGDVSYVPLKWVAAVFDKLSEKLGNKRLFVLSVLGLQSSGKSTLLNALFGLQFTLSAGRCTRGAYMQLLKVEETFTAELGFDFVLVVDTEGLRAPELSNKSQNHDNELATFVIGLGNLTLINIMGGNPSEMQDIRQIVIQAFLRMKQVKISPSCLFVHQNVREVTAKDQTMEGRRQLEERLDELAAIAAAEEQCSNVTCFSDVIKFDVNTHIYYFAHLWDGNPPMAPPNPRYSHNVQELKSRILVTAQQESRGSIMKISDVKSRVQDLWRALRNENFIFSFRNTQEVMVMSKLETMYNSWTWELRSDVQRLQDELISQIQNGKIQTLETYTLEAPVTEIYEAIKQKLEKYFNEDPDSEVLVQWKGNFENKLITLKQALILDGQRKAKELISFKKNQEKPGNKKSGYEKELLEKSRKLALSLSGTELSEEELHEEFNPLWEKWVYDVSSSLPLAVEPEIEVDYENILLDYFKKEKDIVSILKNYSGEKFEINYDKHVKMNRNFWGLTTMTIETQDIHSINMTTDCIISKVNETVNKISQQKHDYNPTYFHEILRIIHEEMKSAPTQKRYTFTRKYEIDLSLCLFQRASVKFKEMHKAFKRANDPVHYLQSKKDDFFMSFKISCQGATSIKTFVDFLWKKLTPAVSSTIRKNTALKIAGDIRTTCRAFNENRANLEKHILISLAEEENFDNYCQYLHNPESFFKNYIENHVKRYLSDTGSKKIKTFLQMSLHDIKNATLSAIHASTAIAKDKSSTVSGWLDLFCDHLGSTLTFPRKDLISIEHQEIKDIEFIKEAMSKALDPEMKKVEQNCLSKLVEEMIPEIQKMLFEHLCGCWKQCPFCKAICTNTIPTHEGDHSVPFHRPKALSGWGWYQTDHFVIEHCTSLVASDCDFVLNDGRRIPYKTYRQAGGEYATWSITPDTSTQPYWKWFVCHFRSKLEEKYHKRLFNEGEIPDAWNKITKQDVLDDLKKN", "length": 2271 }, "evidence": [ { "id": "F1RMQ6", "url": "https://omabrowser.org/oma/group/F1RMQ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80SU7-1", "protein_name": "Interferon-induced very large GTPase 1", "gene_name": "Gvin1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATAKCFTDEPQLQSRRKHNLQEMLTEVGLSVDYWLPKLQEDLGVTSAQALQYLDRNDLQKLKSQTTHTWEKRALEKLLDFSQPNSVAELQETPREMKKNRQRQAGQALQALKALQSEGKHREEEAVRRKEAELRQAMEIPEECWPTAEVSLKDITEIMERHLSHMERTLAHSPNLSDGDLVRWASGGLALQGIYKTNHPRSLIQKREELLSVPKQFSLVGPEHGTEIKTMEFSSFHEQAMFTETIKMMGFSSTSLVKGEGWGFSLEAGIDQNEQTASENTHQSHSEQTYFCSARFSYIPLATCHFHINDLELSNAALQELKTIEELLEQTTDHRDGLPLLRHRAENFFHRFGSHANQGPLQLGGIYCWKAISEGFKSEHLADVKQQTRESLNIYIMGSYSGFGVKVGASVNIANSNSETASFSTTHLHSQTKVQLSVAQIGGPAEADGIAQWTAGLVVSNQTWSVIDRELQLVPIWDIILSSHRTDFKNALQVANCLKDNYTALTELDAQIQEGEEFLTARKEAKLFIEDVKCWEVSDPEEQLTKLLDFMQTLSQKIKSYNIWINTCLTDWDLQNFLINTVKFCKTSPTYKTQFIKSQLCILLEPHVYKVTNFPEAHSIIQWINQSEYGEEQVKITSFSEFIKTLKKTHKYLMEVNFKNEAPETVEEAERTATYEVTTALSSFLKYLKETEQPDMQLLLLSIAAGAGYQLVNSIFQHLLGCDELNFLLDQMQSNQHKYQELKNICNYRAQAFLVLTALRTTVEITDISTEEKRQRLALIKQHMGTLLSEEVAHVLTKHGEHHDWESLENDLRLLIEGDYKATTHYLQMDEVKKQLQSLCHGKKQTYKQKSNENITKGMIENGPFLKLLQRLGLDNYYPKRMSRADFHLIYKTSVYNSQPRSEKELPFYFLQKLLMLDYGFRHLIVKDDENIKKQISIGSSNHENEDIDPYDDVIIDNDSPGYPSATESWPHIHPLDIQMTILHCADDLTRQYIFSKLSICHYALPLVVPNPNTSQIEFYLWSLRQIRKSWQDASKSPQDKSYSHRNQQMCRVSTPIVSFIRVGNDLSASKSQIMNSLLSKRKHDVFFHRHCKGSNKHCLLMQGVVEICWFCPAGQGEDTFENCLTFTSLHGDAKEHTQQLSFLQHVSSIIVVLMSVSDNNKENQKLVRHLWQSSTPLICLIDDKEKAIANTSGKRMRIGIKNRNEAELTEELTNAIKHFLELSNTVLSLEDCSQTARELGFIIDEDQRDCKEAKEKAQTVMALLEEYKLSQTKENLLPLQGQLWHLWCKKDKEFYHLREKGNRSIEQHKSEIETHKRKIRRQQLEKAFPLNDLMRSVLELLQDYSETHNKLYVLQWLTLFFDNLTIDHLDKLHERQRSLWLRIQTEKQRAQKSNSVQNQIEAISTEIHNCTLGIEHLLREVGQIYEALEETSSSRDSLFLCLPQIAADLMIAGVPIELMDGDASYVPLKWVAAIFDKITEKVGDKRLFVLSVLGLQSSGKSTLLNALFGLQFTVSAGRCTKGAYMQLLKVEETFTEELGFNYVLVIDTEGLRAPELNNKSQNWDHELATLVIGLGNLTLINIFGENPSDIQDILQISVQAFLRMKQVKISPSCLFVHQNVGEVTAKDQTMEGRKRLEQKLDEMTALAAELEECSNITRFSDVIKFDANRHVYYFAHLWDGNPPMAPPNPRYSYNVQELRNEILSTAQQESRGRILKISDFKFRVQDLWKALVSENFIFSFRNTQEVIAMSKLETKYNEWTWELRSHVLDLQNQLDNQIQNGKILTLTSNLLEEPLSRKLKTIKEEFDKYFEEDPDCEILVQWKANFEHKLLILKDSLISDTRQKCNEHISLKNSQEILDNQKSQYENQLLERSRKLALNLKGKELSDEELHEKFRQLWTSWIYDVSSNVPHVTEPNIDLDSENILLEYFKKDKNIVERLKIKSQGKFEIMYDKHIQMKKKYLLLRKSLETCHVESIKKTTNNIQLKFTETLTNIWKQKRDYSQNYFHEILRIIENELKSEPCEGDYTFTKDYIIDLSLYLFQRASKDFKKMHAAFKTANDPVNYLERKKDDFFMSFKISCQGATSITSFVDFLWLKLTPAISVSIWKIMVQKIAGDMRATCPEFNGNRANLEIHILYSLAEEEKFDKYWKYIQKPEEFFRDYIRDHIKRYCSEKESEKIKTFLNISLGDIKNTILSAIHNSTKVAKAKGSTASHWLDLFCDHLGSNLVFPRKDLVSIEHQELMDTEFLKEAMSKALDPAMREVEEDCSSKHIDEIVPDIEKILSEHLCGCWKQCPFCKAICTNTIPQHEGDHSVPFHRPQAVSGWHWHKTDQFHINVCTSSVASNISFILDGFREFPFKKYREAGGDYATWSITPDSSTQPYWKWFVCHFRSNLEENYGKKFTGKGSLPDLWTKITKQEVLNDLKK", "length": 2427 }, "evidence": [ { "id": "F1RMQ6", "url": "https://omabrowser.org/oma/group/F1RMQ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1RMQ6", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RMQ6", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RMQ6", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1302, "end_pos": 1304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1363, "end_pos": 1365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1561, "end_pos": 1563, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1579, "end_pos": 1581, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1907, "end_pos": 1909, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2131, "end_pos": 2133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 712, "end_pos": 714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMQ6" }, { "id": "PS51717", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51717" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VLIG-type G", "eco_id": "ECO_0000259", "start_pos": 1487, "end_pos": 1728, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1302, "end_pos": 1304 }, { "start_pos": 1363, "end_pos": 1365 }, { "start_pos": 1561, "end_pos": 1563 }, { "start_pos": 1579, "end_pos": 1581 }, { "start_pos": 1907, "end_pos": 1909 }, { "start_pos": 2131, "end_pos": 2133 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 712, "end_pos": 714 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMR8-1", "uniprot_ac": "F1RMR8", "uniprot_id": "F1RMR8_PIG", "mass": { "chemical_mass": 104537.0, "monoisotopic_mass": 104537.0 }, "refseq": {}, "gene_names": [ { "name": "NLRP7", "type": "recommended", "evidence": [ { "id": "F1RMR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR8" } ] } ], "protein_names": [ { "name": "NACHT domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1RMR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMR8", "url": "https://www.uniprot.org/uniprotkb/F1RMR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NLRP7", "url": "https://www.uniprot.org/uniprotkb/F1RMR8", "locus": {} } ], "crossref": [ { "id": "F1RMR8", "url": "https://alphafold.ebi.ac.uk/entry/F1RMR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17779", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17779", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RMR8", "url": "https://www.uniprot.org/uniprotkb/F1RMR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMR8-1", "url": "https://www.uniprot.org/uniprotkb/F1RMR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LLQLWHGSGTPYASERPKKKGKNNEIHTLGDLEGGKPGWRTETSSLCNHTFWPSDGGFHYNNIAHRSQKLITYLNPTIPTQPMPLTVVLHGPAGVGKTTVAKKLMLDWTQDGLAQAVHSAFYLSCKDLSHRGTCTFAELIAAAQPGAREAVPQLPARAQEILLVVDGFEELRVPSGALVRDLCGDWKQPKPVAVLLGSLLRRKMLPRATLVITTRPGALRELRLLAEQPLFVEIEGFLEPDKKAYFLEHFGEERQALRAFALMKGNAALFRLGSAPAVCRIVCTCLKAQMEGGEDPASTCQTTTSLFLRFLCSQFAPAPGACPHPRLQAALRAACLLAAEGAWTQTSVFDGDDLGRLGLTPSALCPFLDKQILQKNGDCGGCYSFVHLSVQQLLAAMVYVLETEEEEAAAGGEAGGCTWDIGDVQKLLSKEERRKNPDLTRVGSFLFGLLNEERARELETTFGCRVSGAVRRELLKCRSESDGNGPFSSMMDTKEMLHCLHESQEEQLVKDAMAHVPEIAVHLTSAFEMVEASFCLKHCQDLRKISLQVGKRIFLENDADAEVDRSQHDQHSLQVWADLCSVFSSNENLLFLDVRDSVLSRSSVRILCEQVTHATCHLQKVVIKNISPADAYRDFCLAFIGKKTLTHLVLEGNVHSDKMLLLLLCEILKHARCNLQYLRLGSCSDTTQRWADFSSALKINQSLKCLDLTASEFLDEGVKLLCATLRHPKCSLQKLSLEDCQLTEACCKELSSALIVNQRLTHLCLAKNNLGDHGVKLLCEGLSYPECQLQTLVLRHCSINRHGCKYISKLLQGDCSLTSLDVGFNPITTGLYFLCEALKKPNCKLKCLGLWGCSITPFSCQDLASALLSNQSLETLDLGQNILGQSGVTALLEALKQKHGPLKTLRLKADESTKIQRMAEAVREGNPQLTVEWNHTGTRRSLCCDFLS", "length": 948, "header": "tr|F1RMR8-1|F1RMR8_PIG 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Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMR8", "url": "https://www.uniprot.org/uniprotkb/F1RMR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RMR8", "url": "https://www.uniprot.org/uniprotkb/F1RMR8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RMR8", "url": "https://www.uniprot.org/uniprotkb/F1RMR8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "F1RMR8", "url": "https://www.uniprot.org/uniprotkb/F1RMR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 625, "end_pos": 627, "annotation": "n_glycosylation_sequon" }, { "start_pos": 700, "end_pos": 702, "annotation": "n_glycosylation_sequon" }, { "start_pos": 870, "end_pos": 872, "annotation": "n_glycosylation_sequon" }, { "start_pos": 934, "end_pos": 936, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": 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"categories": [] }, { "id": "ENSSSCG00000003071", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003071", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100737509", "url": "https://www.ncbi.nlm.nih.gov/gene/100737509", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737509", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737509", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QMIFRKH", "url": "https://omabrowser.org/oma/group/QMIFRKH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMU9", "url": "https://www.orthodb.org/?gene=F1RMU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005655996", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655996", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMU9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQVPLTFSDVAIDFSQEEWECLNSDQRNLYRDVMLENYTNLVSLDFDFTTESNKLSSEKSSYEVNSYHWETTKRSKTFNLMRFIFRSHSESRIELERKQAPNVGYFSQMIFKKHISHPLYQRIHTREKSYECKECRKGFKKYSHLTEHLRDHIDVRPYECKECGKAFVVLQHFIRHKKSHTDLKPYECNGCEKAFRFYSQLIQHQIIHTGMKPYECKQCGKAFRRYSHLTEHQKIHIGLKPYECKECGETFRLYRHMCLHQKIHHGVKPYICKECGKAFGHRSSLYQHKKIHSGEKPYKCKQCGKAFVRSYLLIEHQRSHTGEKPHECKECGKAFSRGSSLLKHKRIHSSEKLYDCKECGKAFCRGSQLTQHQRIHTGEKPHECKECGKTFKLHSYLIQHQIIHSDLKPYECKQCGKAFSRVGDLKTHQSIHAGEKPYECKECGKTFRLNSQLIYHQTIHTGLKPYICKECKKAFRSISGLSQHKRIHTGEKPYKCKECGKAFNRSDRLTQHQRIHTGVKPHKCKECGKAFTRCYQLTQHQRFHIGEKFLM", "length": 552, "header": "tr|F1RMU9-1|F1RMU9_PIG Isoform 1 of Zinc finger protein 404 OS=Sus scrofa OX=9823 GN=ZNF404 PE=3 SV=3 CANONICAL=F1RMU9-1" }, "isoforms": [ { "isoform_ac": "F1RMU9-1", "url": "https://www.uniprot.org/uniprotkb/F1RMU9/entry", "sequence": { "sequence": "MAQVPLTFSDVAIDFSQEEWECLNSDQRNLYRDVMLENYTNLVSLDFDFTTESNKLSSEKSSYEVNSYHWETTKRSKTFNLMRFIFRSHSESRIELERKQAPNVGYFSQMIFKKHISHPLYQRIHTREKSYECKECRKGFKKYSHLTEHLRDHIDVRPYECKECGKAFVVLQHFIRHKKSHTDLKPYECNGCEKAFRFYSQLIQHQIIHTGMKPYECKQCGKAFRRYSHLTEHQKIHIGLKPYECKECGETFRLYRHMCLHQKIHHGVKPYICKECGKAFGHRSSLYQHKKIHSGEKPYKCKQCGKAFVRSYLLIEHQRSHTGEKPHECKECGKAFSRGSSLLKHKRIHSSEKLYDCKECGKAFCRGSQLTQHQRIHTGEKPHECKECGKTFKLHSYLIQHQIIHSDLKPYECKQCGKAFSRVGDLKTHQSIHAGEKPYECKECGKTFRLNSQLIYHQTIHTGLKPYICKECKKAFRSISGLSQHKRIHTGEKPYKCKECGKAFNRSDRLTQHQRIHTGVKPHKCKECGKAFTRCYQLTQHQRFHIGEKFLM", "length": 552, "header": "tr|F1RMU9-1|F1RMU9_PIG Isoform 1 of Zinc finger protein 404 OS=Sus scrofa OX=9823 GN=ZNF404 PE=3 SV=3 CANONICAL=F1RMU9-1" }, "locus": { "chromosome": "6", "start_pos": 50709152, "end_pos": 50698851, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003408.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003408.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003325.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003325.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737509", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737509", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MHG2-1", "protein_name": "Zinc finger protein 404", "gene_name": "ZNF404", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLSFQMPLTFSDVSIDFSQEEWECLNSDQKNLYRDVMLETYTNLVSLDFDFTTENNKLSSEKSSFEVNSYHWEIMKSKTFNLMGFIFRNDSQSRNQFEGQQASQVEHFSQMIFQKHISLPLHQRIHTKEKSCECKECRKGFRKYSHLTENLRDHSGVRPYECRECGKAFPVLQHFIRHKKSHTDLKSYECNGCEKAFRLYSQLIQHQIIHTGVKPYKCKQCGKAFRRHSHLTKHQNIHVGLKPYKCKECGETFRFYRHMCLHQKIHHGVKPYICKECGKAFGHHSSLYQHKKIHSGEKPYKCKQCGKAFVYSYLLTEHQRSHTGEKPHECKECGKAFSRASSLLRHKRIRSGEKHYDCKECGKAFCRVYQFTQHQRIHTGEKPHECKECGKTFKLHSYLIKHQIIHSDLKPYECKHCGKAFNRVGNLKMHESIHTGEKPYECKECGKTFRLNSKLNYHQAVHTGLKPYICKECKKAFRSISGLSQHKRIHTGEKTL", "length": 497 }, "evidence": [ { "id": "F1RMU9", "url": "https://omabrowser.org/oma/group/F1RMU9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q494X3-1", "protein_name": "Zinc finger protein 404", "gene_name": "ZNF404", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARVPLTFSDVAIDFSQEEWEYLNSDQRDLYRDVMLENYTNLVSLDFNFTTESNKLSSEKRNYEVNAYHQETWKRNKTFNLMRFIFRTDPQYTIEFGRQQRPKVGCFSQMIFKKHKSLPLHKRNNTREKSYECKEYKKGFRKYLHLTEHLRDHTGVIPYECNECGKAFVVFQHFIRHRKIHTDLKPYECNGCEKAFRFYSQLIQHQIIHTGMKPYECKQCGKAFRRHSHLTEHQKIHVGLKPFECKECGETFRLYRHMCLHQKIHHGVKPYKCKECGKAFGHRSSLYQHKKIHSGEKPYKCEQCEKAFVRSYLLVEHQRSHTGEKPHECMECGKAFGKGSSLLKHKRIHSSEKLYDCKDCGKAFCRGSQLTQHQRIHTGEKPHECKECGKTFKLHSYLIQHQIIHTDLKPYECKQCGKAFSRVGDLKTHQSIHAGEKPYECKECGKTFRLNSQLIYHQTIHTGLKPYVCKECKKAFRSISGLSQHKRIHTGEKPYECKECDKAFNRSDRLTQHETIHTGVKPQKCKECGKAFSHCYQLSQHQRFHHGERLLM", "length": 552 }, "evidence": [ { "id": "F1RMU9", "url": "https://omabrowser.org/oma/group/F1RMU9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "in utero embryonic development", "id": "GO:0001701", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001701", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RMU9", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMU9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 552, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMU9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMU9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 131, "end_pos": 158, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RMU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMU9" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 78, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 38, "end_pos": 40 }, { "start_pos": 505, "end_pos": 507 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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Is recruited by release factors to stalled ribosomes together with SMG1 and SMG8 (forming the SMG1C protein kinase complex) and, in the SMG1C complex, is required for the efficient association between SMG1 and SMG8. Plays a role in brain, heart, and eye development.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0K1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0K1#function" }, { "database": "UniProtKB", "id": "ARBA00059168", "url": "https://www.uniprot.org/uniprotkb/ARBA00059168#function" }, { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMG9", "url": "https://www.uniprot.org/uniprotkb/F1RMV1", "locus": { "chromosome": "6", "start_pos": 50551057, "end_pos": 50569697, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003068", "url": "https://www.ensembl.org/id/ENSSSCG00000003068" } ] } } ], "crossref": [ { "id": "F1RMV1", "url": "https://alphafold.ebi.ac.uk/entry/F1RMV1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003068", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003068", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523741", "url": "https://www.ncbi.nlm.nih.gov/gene/100523741", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523741", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523741", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SEYYPHL", "url": "https://omabrowser.org/oma/group/SEYYPHL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMV1", "url": "https://www.orthodb.org/?gene=F1RMV1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14270:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14270:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005655993", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655993", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B0K1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0K1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0K1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMV1-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSESGHSQPGLYGMERRRRWKEPGPGGPQNLSGPGGRERDYIAPWERERRDGSEEPGTAVMQKTPIILSKPPAERSKQPAPPAAPAAPPAPAPLEKPIVLMKPREEGKGPAASTPASTPEGTTPPPPAAPTPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYQGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA", "length": 520, "header": "tr|F1RMV1-1|F1RMV1_PIG Isoform 1 of Nonsense-mediated mRNA decay factor SMG9 OS=Sus scrofa OX=9823 GN=SMG9 PE=3 SV=5 CANONICAL=F1RMV1-1" }, "isoforms": [ { "isoform_ac": "A0A287B0K1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0K1/entry", "sequence": { "sequence": "MDTSRVCQPLSYDGNSERCVLDSQVTMSESGHSQPGLYGMERRRRWKEPGPGGPQNLSGPGGRERDYIAPWERERRDGSEEPGTAVMQKTPIILSKPPAERSKQPAPPAAPAAPPAPAPLEKPIVLMKPREEGKGPAASTPASTPEGTTPPPPAAPTPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYQGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNW", "length": 521, "header": "tr|A0A287B0K1-1|A0A287B0K1_PIG Computationally mapped isoform of Nonsense-mediated mRNA decay factor SMG9 OS=Sus scrofa OX=9823 GN=SMG9 PE=3 SV=2 CANONICAL=F1RMV1-1" }, "locus": { "chromosome": "6", "start_pos": 50565790, "end_pos": 50553152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036850.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036850.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049748.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049748.3" } ] } }, { "isoform_ac": "F1RMV1-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1/entry", "sequence": { "sequence": "MSESGHSQPGLYGMERRRRWKEPGPGGPQNLSGPGGRERDYIAPWERERRDGSEEPGTAVMQKTPIILSKPPAERSKQPAPPAAPAAPPAPAPLEKPIVLMKPREEGKGPAASTPASTPEGTTPPPPAAPTPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYQGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA", "length": 520, "header": "tr|F1RMV1-1|F1RMV1_PIG Isoform 1 of Nonsense-mediated mRNA decay factor SMG9 OS=Sus scrofa OX=9823 GN=SMG9 PE=3 SV=5 CANONICAL=F1RMV1-1" }, "locus": { "chromosome": "6", "start_pos": 50565531, "end_pos": 50552061, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003405.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003405.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003322.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003322.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 114, "start_aa": "Thr", "end_pos": 114, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr114", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 123, "start_aa": "Thr", "end_pos": 123, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr123", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 131, "start_aa": "Thr", "end_pos": 131, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr131", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523741", "resource": "KEGG Pathway" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" } ], "orthologs": [ { "uniprot_canonical_ac": "E7F7F6-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "smg9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSESGHSQPGLYGQGRRRRRRRERDPAGPPGQNLSGPSRDRDYVPRERRDGSEESTGPLLQKTPIILAKPPGERSKASAPASGPPSLEKPIMLIKTRDEGGKPGNPPDIPPSASGAGTAKMEREGQRPTQPVYQIQNRGMGSAASGGAVDPVIGQTKLLPPEKMKHSIKLVDDQMNWCDSAMEYLRDQTDMLVVGVIGLQGTGKSTIMSLLSANSPEEDQRAYVFRAQTQEIKERAGNQSSGIDFYITQERVIFLDTQPVLSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQITAFLFTVCHVVIVIQDWFTDINLYRFLQTAEMLKPSTPSASHDSTGSSGPDDGSEYYPHIVFLQNKARREEFCPRNLKKMHMAVDKLMAHSHLKYKGTLSMLDCNIFPGLSRDYMETEVNLFLLPLMENDGEDALTRAGSGPPLFSLLPGYRGHPNFSSLVSKFRSQILAMSRSQLSHTILTEKNWFHYAARIWDGVKKSSALSEYSRLLS", "length": 505 }, "evidence": [ { "id": "F1RMV1", "url": "https://omabrowser.org/oma/group/F1RMV1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MBJ5-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSESGHSQPGLYGIERRRRWKEPGPGGPQNLSGPGGRERDYIAPWERERRDGSEETSTAVMQKTPIILSKPPAERSKQPPPPAAPAAPPAPAPLEKPIVLMKPREEGKGPAATTSTSTPEGTAPPPPAAPVPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSEEGAEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLMPFMDSETESETPPRAGPGSSSLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA", "length": 520 }, "evidence": [ { "id": "F1RMV1", "url": "https://omabrowser.org/oma/group/F1RMV1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5PQS6-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "Smg9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSESGHSQPGLYGIERRRRWKEPGSSGPQNLSGPGGRERDYIAPWERERRDGSEDPSTNVMQKTPIILSKPPAERSKQPPPSTAPAAPPAPAPLEKPIVLMKPREEGKGPVAATGASTPEGTAPPPPTAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPTAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSAAGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNIFPGLPPDFLDAEVNLFLVPFMDSEAENENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA", "length": 520 }, "evidence": [ { "id": "F1RMV1", "url": "https://omabrowser.org/oma/group/F1RMV1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DB90-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "Smg9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSESGHSQPGLYGIERRRRWKEPGSSGPQNLSGPGGRERDYIAPWERERRDGSEDPSTNVMQKTPIILSKPPAERSKQPPPSTAPAAPPAPAPLEKPIVLMKPREEGKGPVAGTGASTPEGTAPPPPTAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPTAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSAGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDAEVNLFLVPFMDSEAENENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA", "length": 520 }, "evidence": [ { "id": "F1RMV1", "url": "https://omabrowser.org/oma/group/F1RMV1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSESGHSQPGLYGIERRRRWKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTSVMQKTPIILSKPPAERSKQPPPPTAPAAPPAPAPLEKPIVLMKPREEGKGPVAVTGASTPEGTAPPPPAAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHSIKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRTYVFRAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSDEGTEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPDFLDSEVNLFLVPFMDSEAESENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSMARPQLSHTILTEKNWFHYAARIWDGVRKSSALAEYSRLLA", "length": 520 }, "evidence": [ { "id": "F1RMV1", "url": "https://omabrowser.org/oma/group/F1RMV1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay", "id": "GO:0000184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000184", "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "pmid": "" }, { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "pmid": "" }, { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RMV1", "url": "https://www.uniprot.org/uniprotkb/F1RMV1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMV1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 520, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMV1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMV1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], 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"categories": [ "Protein Classification" ] }, { "id": "IPR051515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MLVSTWE", "url": "https://omabrowser.org/oma/group/MLVSTWE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32341:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32341:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RMV3", "url": "https://www.uniprot.org/uniprotkb/F1RMV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMV3-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSKLPAVPGEEETTILMAKEELEALRTAFESGDIPQAASRLKQLLASSEGGRLEVGVTGESGAGKSSLINALRGLGAEDPGAALTGVVETTMQPSPYPHPQLPDVTLWDLPGAGSPGCSADKYLKQVDFGRYDFFLLVSPRRCGAVETRLASEILRQGKKFYFVRTKVDEDLAASRTQRPSGFSEAAVLQEIREHCAERLRAAGVSDPRIFLVSNLSPARYDFPLLVSTWEHDLPAHWRHAGLLSLPDISLEALQKKKDMLQEQVLKTALVSGVIQALPVPGLAAAYDDALLIRSLRGYHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARAFEKGIPVFGTLVAGGISFGTVYTMLQGCLNEMAEDAQRVRIKALEEDEPQPPVSLEAAGDNGVEKRGSREGSCEEAPLSARRKLGLLLKYILDSWKKRDLSEDK", "length": 464, "header": "tr|F1RMV3-1|F1RMV3_PIG Isoform 1 of Immunity related GTPase cinema OS=Sus scrofa OX=9823 GN=IRGC PE=3 SV=1 CANONICAL=F1RMV3-1" }, "isoforms": [ { "isoform_ac": "F1RMV3-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV3/entry", "sequence": { "sequence": 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[], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMV3", "url": "https://www.uniprot.org/uniprotkb/F1RMV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { 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"sequence": "MATSRLPAVPEEETTILMAKEELEALRTAFESGDIPQAASRLRELLATTETTRLEVGVTGESGAGKSSLINALRGVGAEDPGAALTGVVETTMQPSPYPHPQFPDVTLWDLPGAGSPGCSADKYLKEVDFGRYDFFLLVSPRRCGAVETRLASEILRQGKKFYFVRTKVDEDLAATRNQRPSGFSEAAVLQEIRDHCAERLRAAGLSDPRIFLVSNLSPNRYDFPMLVTTWEHDLPAHRRHAGLLSLPDISLEALQKKKDMLQEQVLKTALVSGVIQALPVPGLAAAYDDALLIRSLRGYHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARAFERGIPVFGTLVAGGISFGTVYTMLQGCLNEMAEDAQRVRIKALEEDETQGEVSLEAAGDNAVEKRSSGEGTSEEAPLSTRRKLGLLLKYILDSWKRRDLSEDK", "length": 463 }, "evidence": [ { "id": "F1RMV3", "url": "https://omabrowser.org/oma/group/F1RMV3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NXR0-1", "protein_name": "Interferon-inducible GTPase 5", "gene_name": "IRGC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVTGESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGCPADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQRPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHRRHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSLRGYHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARAFERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASDNGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK", "length": 463 }, "evidence": [ { "id": "F1RMV3", "url": "https://omabrowser.org/oma/group/F1RMV3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C262-1", "protein_name": "Interferon-inducible GTPase 5", "gene_name": "Irgc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.uniprot.org/uniprotkb/F1RMV5/entry#names_and_taxonomy" } ] }, { "name": "1.13.11.18", "type": "synonym", "evidence": [ { "id": "F1RMV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV5/entry#names_and_taxonomy" } ] }, { "name": "Sulfur dioxygenase ETHE1", "type": "synonym", "evidence": [ { "id": "F1RMV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ETHE1", "url": "https://www.uniprot.org/uniprotkb/F1RMV5", "locus": { "chromosome": "6", "start_pos": 50375841, "end_pos": 50396237, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003064", "url": "https://www.ensembl.org/id/ENSSSCG00000003064" } ] } } ], "crossref": [ { "id": "F1RMV5", "url": "https://alphafold.ebi.ac.uk/entry/F1RMV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003064", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003064", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07724", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07724", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051682", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051682", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43084", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43084", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43084:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43084:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1614517", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614517", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "12981", "url": "https://www.rhea-db.org/rhea/12981", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMV5-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALRVAGRQLSQHRGSGAPILLRQLFEPKSCTYTYLLDPVLETAHRDAQLVKEEAGGRVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDQSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHERIFTLPGDCLIYPAHDYNGLTVSTVEEERTLNPRLTLSCEEFVKVMDNLKLPKPQQIGEPLGVWISGSEGGGGWELDFWV", "length": 244, "header": "tr|F1RMV5-1|F1RMV5_PIG Isoform 1 of Persulfide dioxygenase ETHE1, mitochondrial OS=Sus scrofa OX=9823 GN=ETHE1 PE=1 SV=4 CANONICAL=F1RMV5-1" }, "isoforms": [ { "isoform_ac": "F1RMV5-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV5/entry", "sequence": { "sequence": "MAALRVAGRQLSQHRGSGAPILLRQLFEPKSCTYTYLLDPVLETAHRDAQLVKEEAGGRVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDQSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHERIFTLPGDCLIYPAHDYNGLTVSTVEEERTLNPRLTLSCEEFVKVMDNLKLPKPQQIGEPLGVWISGSEGGGGWELDFWV", "length": 244, "header": "tr|F1RMV5-1|F1RMV5_PIG Isoform 1 of Persulfide dioxygenase ETHE1, mitochondrial OS=Sus scrofa OX=9823 GN=ETHE1 PE=1 SV=4 CANONICAL=F1RMV5-1" }, "locus": { "chromosome": "6", "start_pos": 50394382, "end_pos": 50376178, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003401.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003401.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003318.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003318.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1614517", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614517", "resource": "Reactome", "description": "Sulfide oxidation to sulfate" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "pmid": "" }, { "name": "sulfur dioxygenase activity", "id": "GO:0050313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050313", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "hydrogen sulfide metabolic process", "id": "GO:0070813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070813", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "pmid": "" }, { "name": "glutathione metabolic process", "id": "GO:0006749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006749", "evidence": [ { "database": "UniProtKB", "id": "F1RMV5", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "12981", "name": "", "equation": "S-sulfanylglutathione + O2 + H2O = sulfite + glutathione + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "12981", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/12981" } ] }, { "id": "R-SSC-1614605", "name": "Persulfide sulfur is dioxygenated", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane, mitochondrial matrix", "input_participant_list": [ "R-SSC-1614576" ], "output_participant_list": [ "R-SSC-1614646" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1614605", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614605" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-1614576", "participant_name": "SQOR [mitochondrial inner membrane]", "crossref": [ { "id": "F1SN58", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000004666", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000005026", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000005152", "database": "ENSEMBL", "url": "" }, { "id": "XP_020947661.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947564.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947804.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947489.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947727.1", "database": "RefSeq", "url": "" }, { "id": "XP_005659694.2", "database": "RefSeq", "url": "" }, { "id": "XP_020947945.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947618.1", "database": "RefSeq", "url": "" }, { "id": "NP_001231167.1", "database": "RefSeq", "url": "" }, { "id": "101496", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-1614646", "participant_name": "SQOR [mitochondrial inner membrane]", "crossref": [ { "id": "NP_001231167.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947661.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947727.1", "database": "RefSeq", "url": "" }, { "id": "F1SN58", "database": "UniProt", "url": "" }, { "id": "XP_020947804.1", "database": "RefSeq", "url": "" }, { "id": "XP_020947945.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000005026", "database": "ENSEMBL", "url": "" }, { "id": "101496", "database": "VGNC", "url": "" }, { "id": "XP_020947489.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000005152", "database": "ENSEMBL", "url": "" }, { "id": "XP_020947618.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000004666", "database": "ENSEMBL", "url": "" }, { "id": "XP_020947564.1", "database": "RefSeq", "url": "" }, { "id": "XP_005659694.2", "database": "RefSeq", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMV5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 244, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMV5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMV5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV5" }, { "id": "SM00849", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00849" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Metallo-beta-lactamase", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 179, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMV7-1", "uniprot_ac": "F1RMV7", "uniprot_id": "F1RMV7_PIG", "mass": { "chemical_mass": 35989.0, "monoisotopic_mass": 35989.0 }, "refseq": { "ac": "XP_003481923", "name": "ly6/PLAUR domain-containing protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481923" }, "gene_names": [ { "name": "LYPD3", "type": 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"common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LYPD3", "url": "https://www.uniprot.org/uniprotkb/F1RMV7", "locus": { "chromosome": "6", "start_pos": 50341161, "end_pos": 50345338, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003062", "url": "https://www.ensembl.org/id/ENSSSCG00000003062" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003062", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003062", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23562", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23562", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23563", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23563", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736591", "url": "https://www.ncbi.nlm.nih.gov/gene/100736591", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736591", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736591", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VQDELCT", "url": "https://omabrowser.org/oma/group/VQDELCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMV7", "url": "https://www.orthodb.org/?gene=F1RMV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10624", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10624", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10624:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10624:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-163125", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163125", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481923", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RMV7", "url": "https://www.uniprot.org/uniprotkb/F1RMV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPAGKAGAGAVIWTTGWLLLLPLLLAEGAQALECYSCVQKADDGCSPQKMKTVKCAPGVQVCTEAVGAVETIHGQFSVAVRGCGSGLPGKNDRGLDLYGLLAFIQLQQCSQDRCNAKLNLTSRGLNPAGNESAYGPNGVECYSCVGLSREACQGTAPPVVRCYNASDHVYKGCFDGNVTLTAANVTVSLPVRGCVQDEFCTRDSVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRLPPLVLLPPPPSTTLAPTTSVTTSTPAPTTFTSTSKPTPARTSQIPQKVETENSQETESSLVGGAGGHQDRRNMGQYPTKNEPHYNNKGSAAPSAGLAALLLAAAVGILL", "length": 346, "header": "tr|F1RMV7-1|F1RMV7_PIG Isoform 1 of Ly6/PLAUR domain-containing protein 3 OS=Sus scrofa OX=9823 GN=LYPD3 PE=4 SV=1 CANONICAL=F1RMV7-1" }, "isoforms": [ { "isoform_ac": "F1RMV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RMV7/entry", "sequence": { "sequence": "MDPAGKAGAGAVIWTTGWLLLLPLLLAEGAQALECYSCVQKADDGCSPQKMKTVKCAPGVQVCTEAVGAVETIHGQFSVAVRGCGSGLPGKNDRGLDLYGLLAFIQLQQCSQDRCNAKLNLTSRGLNPAGNESAYGPNGVECYSCVGLSREACQGTAPPVVRCYNASDHVYKGCFDGNVTLTAANVTVSLPVRGCVQDEFCTRDSVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRLPPLVLLPPPPSTTLAPTTSVTTSTPAPTTFTSTSKPTPARTSQIPQKVETENSQETESSLVGGAGGHQDRRNMGQYPTKNEPHYNNKGSAAPSAGLAALLLAAAVGILL", "length": 346, "header": "tr|F1RMV7-1|F1RMV7_PIG Isoform 1 of Ly6/PLAUR domain-containing protein 3 OS=Sus scrofa OX=9823 GN=LYPD3 PE=4 SV=1 CANONICAL=F1RMV7-1" }, "locus": { "chromosome": "6", "start_pos": 50345139, "end_pos": 50341712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003399.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003399.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003316.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003316.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 274, "start_aa": "Thr", "end_pos": 274, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr274", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMV7", "url": "https://www.uniprot.org/uniprotkb/F1RMV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736591", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736591", "resource": "KEGG Pathway" }, { "id": "R-SSC-163125", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163125", "resource": "Reactome", "description": "Post-translational modification: synthesis of GPI-anchored proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MHK5-1", "protein_name": "Ly6/PLAUR domain-containing protein 3", "gene_name": "LYPD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDPARKAGSWAVIWTTGWLLLLSLLLPEGAKALECYSCVQNADDGCSPQKMKTVKCAPGVEVCTEAVGAVETIHGQFSVAVRGCGSGIPGKNDRGLDLYGILAFIQLQQCSQDRCNTKLNLTSRGLNPAGNESAYQPNGVECYSCVGLSRKECQGRAPPVVSCYNASDHFYKGCFDGNVTLTAANVTVSLPVRGCVQDEFCTRDSATGPGFTLSGSCCQGSRCNSDLRNKTYFSPRFPPLVLLPPPRSTTLAPNKSVSTSTSAPSSTVTTKATPVPTTTRSTTKAITPAQTNQTSPQEVGHETFREEEASLAGGASGHQDRRNTGQDPIKDVTHSKGSAAPWAGWVTLLLAMAAGALL", "length": 358 }, "evidence": [ { "id": "F1RMV7", "url": "https://omabrowser.org/oma/group/F1RMV7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O55162-1", "protein_name": "Ly6/PLAUR domain-containing protein 3", "gene_name": "Lypd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDAARRGDTQPVMWTTRWLLLLPLLLCEGAQALECYSCVQKADDGCSPHKMKTVKCGPGVDVCTEAVGAVESIHGQFSVAVRGCGSGIPGKNDRGLDLHGLLAFIQLQQCTEDRCNAKLNLTLRGLNPAGNESAYEHNGAECYSCMGLSREKCQGAMPPVVNCYNASGRVYKGCFDGNVTLTAANVTVSLPVRGCVQDEACTRDGVTGPGFTLSGSCCQGPRCNSDLRNKTYFSPRIPPLVLLPPPTTPAPSTRTQNSSSTTSTTAPTTATTTIKPTTVQASHTSSTHETEHEVIQEEGSHLSGGATGHQDRSNMGKFPEKGGAQIPSKGGSDALGSWLSAILLTVVAGAML", "length": 352 }, "evidence": [ { "id": "F1RMV7", "url": "https://omabrowser.org/oma/group/F1RMV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O95274-1", "protein_name": "Ly6/PLAUR domain-containing protein 3", "gene_name": "LYPD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPARKAGAQAMIWTAGWLLLLLLRGGAQALECYSCVQKADDGCSPNKMKTVKCAPGVDVCTEAVGAVETIHGQFSLAVRGCGSGLPGKNDRGLDLHGLLAFIQLQQCAQDRCNAKLNLTSRALDPAGNESAYPPNGVECYSCVGLSREACQGTSPPVVSCYNASDHVYKGCFDGNVTLTAANVTVSLPVRGCVQDEFCTRDGVTGPGFTLSGSCCQGSRCNSDLRNKTYFSPRIPPLVRLPPPEPTTVASTTSVTTSTSAPVRPTSTTKPMPAPTSQTPRQGVEHEASRDEEPRLTGGAAGHQDRSNSGQYPAKGGPQQPHNKGCVAPTAGLAALLLAVAAGVLL", "length": 346 }, "evidence": [ { "id": "F1RMV7", "url": "https://omabrowser.org/oma/group/F1RMV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91YK8-1", "protein_name": "Ly6/PLAUR domain-containing protein 3", "gene_name": "Lypd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDAARRGDTQPVMWTTGWLLLLPLLLCEGAQALECYSCVQKADDGCSPHRMKTVKCGPGVDVCTEAVGAVETIHGQFSVAVRGCGSGIPGKNDRGLDLHGLLAFFQLQQCSEDRCNAKLNLTLRGLNPAGNESAYEPNGAECYSCVGLSREKCQGSMPPVVNCYNASGRVYKGCFDGNVTLTAANVTVSLPVRGCVQDETCTRDGVTGPGFTLSGSCCQGPRCNADLRNKTYFSPRIPPLVLLPPPTTAAPSTRAQNSSSTTSTAAPTTTTSIIKPTTAQASHTSPHEMDLEVIQEEGASLSGGAAGHGGTAGHGGAAGHQDRSNMEKYPGKGGAQIPAKGGSGTLGSWLSAVLLTVVAGAML", "length": 363 }, "evidence": [ { "id": "F1RMV7", "url": "https://omabrowser.org/oma/group/F1RMV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RMV7", "url": "https://www.uniprot.org/uniprotkb/F1RMV7" } ], "pmid": "" }, { "name": "side of membrane", "id": "GO:0098552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098552", "evidence": [ { "database": "UniProtKB", "id": "F1RMV7", "url": "https://www.uniprot.org/uniprotkb/F1RMV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of smooth muscle cell apoptotic process", "id": "GO:0034392", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034392", "evidence": [ { "database": "UniProtKB", "id": "F1RMV7", "url": "https://www.uniprot.org/uniprotkb/F1RMV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMV7" }, { "id": "SM00134", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00134" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UPAR/Ly6", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 128, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 274 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 131, "end_pos": 133 }, { "start_pos": 165, "end_pos": 167 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 229, "end_pos": 231 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMW0-1", "uniprot_ac": "F1RMW0", "uniprot_id": "F1RMW0_PIG", "mass": { "chemical_mass": 29578.0, "monoisotopic_mass": 29578.0 }, "refseq": { "ac": "XP_020950137", "name": "zinc finger protein 428 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950137" }, "gene_names": [ { "name": "ZNF428", "type": "recommended", "evidence": [ { "id": "F1RMW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMW0" } ] }, { "name": "ZNF428", "type": "synonym", "evidence": [ { "id": "XP_020950137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950137" } ] } ], "protein_names": [ { "name": "Zinc finger protein 428", "type": "synonym", "evidence": [ { "id": "F1RMW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMW0/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 428 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020950137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020950137" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMW0", "url": "https://www.uniprot.org/uniprotkb/F1RMW0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF428", "url": "https://www.uniprot.org/uniprotkb/F1RMW0", "locus": { "chromosome": "6", "start_pos": 50451140, "end_pos": 50459630, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003059", "url": "https://www.ensembl.org/id/ENSSSCG00000003059" } ] } } ], "crossref": [ { "id": "F1RMW0", "url": "https://alphafold.ebi.ac.uk/entry/F1RMW0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003059", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003059", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519901", "url": "https://www.ncbi.nlm.nih.gov/gene/100519901", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25346", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25346", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RN04", "url": "https://www.uniprot.org/uniprotkb/F1RN04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RN04-1", "url": "https://www.uniprot.org/uniprotkb/F1RN04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLFRWIFSPSLHFISVFYFLYSSIKDEKDSQDLILEKTKEAESLRNSSVVSGARKVPGAMERFNKLDMSAMLKMEAALDREQISRKILPEATPVTLNCKMKAREKYQSDLWLEIEHLNKGLEQQGPSASSLALYNTTTNALAQCEADPIESIFEQNLKIKFYISSGSTSPSSYSGDEVDPVKITDSAHLPVHTPTIRRKECHSRILFPTKNKTHRFFLTSFTAPTKCHQCTSLMVGLIRQGCTCDACGFSCHTTCVEKAPRACPVPFHQKKVAFCLDAQKGMGTAYEGHVWIPKKAGMKKGWQRALAVVCDFKLFLYDVDEEKDSKPSVVVSQVIDLSVLLFLQGWSVFRQFSLAL", "length": 357, "header": "tr|F1RN04-1|F1RN04_PIG Isoform 1 of Phorbol-ester/DAG-type domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1RN04-1" }, "isoforms": [ { "isoform_ac": "F1RN04-1", "url": "https://www.uniprot.org/uniprotkb/F1RN04/entry", "sequence": { "sequence": 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improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RN04", "url": "https://www.uniprot.org/uniprotkb/F1RN04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein 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"start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RN85-1", "uniprot_ac": "F1RN85", "uniprot_id": "F1RN85_PIG", "mass": { "chemical_mass": 56189.0, "monoisotopic_mass": 56189.0 }, "refseq": {}, "gene_names": [ { "name": "ABHD15", "type": "recommended", "evidence": [ { "id": "F1RN85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RN85" } ] } ], "protein_names": [ { "name": "Protein ABHD15", "type": "recommended", "evidence": [ { "id": "F1RN85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RN85/entry#names_and_taxonomy" } ] }, { "name": "Alpha/beta hydrolase domain-containing protein 15", "type": "synonym", "evidence": [ { "id": "F1RN85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RN85/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May 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"Protein" ] }, { "id": "F1RN85-1", "url": "https://www.uniprot.org/uniprotkb/F1RN85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "HPHGRALGSPEAGRSRGLSGELAEGTSSPLACRRPGALLPRHAAVERRPRPAPGRARPAWPAGPSAAARRRSEDPARDRGQGHKEEVDRGGPVDQFSDGREPLPGGCRLICKPSALAQCLLRALRRSAALELGPRSWLSGPHLQTLCHFVLPVGPGPELAREYLQLADDGLVALDWVVGPCPRGRRVTNAGGLPAVLLVIPNAWGRLTRNVLGLCLLALERGYYPVIFHRRGHHGCPLVSPRLQPFGDPSDLKEAITYIRFRHPAAPLFAVSEGSGSALLLSYLGECGSSSYVTGAACISPVLRCREWFEAGLPWPYERGFLLHQKIALSRYATALEEIVDTGKLFRSRSLREFEETLFCHTKSFPISWDTYWEHNDPLRDVDEAAVPVLCICSADDPVCGPPNRFLPTELFHSNPYFFLLLSRHGGHCGFLRQEPLPAWSHEVILEYFRALTEFFRTEERMKGLSRHRASFLVGRRRWGTLPKREVSPSSNLEEIFSWKRSYTR", "length": 505, "header": "tr|F1RN85-1|F1RN85_PIG Isoform 1 of Protein ABHD15 OS=Sus scrofa OX=9823 GN=ABHD15 PE=3 SV=4 CANONICAL=F1RN85-1" }, "isoforms": [ { "isoform_ac": "F1RN85-1", "url": "https://www.uniprot.org/uniprotkb/F1RN85/entry", "sequence": { "sequence": 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} ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RN85", "url": "https://www.uniprot.org/uniprotkb/F1RN85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], 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"https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "F1RN85", "url": "https://www.uniprot.org/uniprotkb/F1RN85" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "monoacylglycerol lipase activity", "id": "GO:0047372", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047372", "evidence": [ { "database": "UniProtKB", "id": "F1RN85", "url": "https://www.uniprot.org/uniprotkb/F1RN85" } ], "pmid": "" }, { "name": "short-chain carboxylesterase activity", "id": "GO:0034338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034338", "evidence": [ { "database": "UniProtKB", "id": "F1RN85", "url": "https://www.uniprot.org/uniprotkb/F1RN85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RN85-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 505, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RN85-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RN85" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923154" } ] } ], "function": [ { "annotation": "Putative oxidoreductase.", "evidence": [ { "database": "UniProtKB", "id": "F1RNA5", "url": "https://www.uniprot.org/uniprotkb/F1RNA5#function" }, { "database": "UniProtKB", "id": "ARBA00037096", "url": "https://www.uniprot.org/uniprotkb/ARBA00037096#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNA5", "url": "https://www.uniprot.org/uniprotkb/F1RNA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DHRS13", "url": "https://www.uniprot.org/uniprotkb/F1RNA5", "locus": { "chromosome": "12", "start_pos": 45121155, "end_pos": 45127446, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017778", "url": "https://www.ensembl.org/id/ENSSSCG00000017778" } ] } } ], "crossref": [ { "id": "F1RNA5", "url": "https://alphafold.ebi.ac.uk/entry/F1RNA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017778", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017778", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05327", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05327", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515168", "url": "https://www.ncbi.nlm.nih.gov/gene/100515168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515168", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEVIFMM", "url": "https://omabrowser.org/oma/group/NEVIFMM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RNA5", "url": "https://www.orthodb.org/?gene=F1RNA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43157:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43157:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923154", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RNA5", "url": "https://www.uniprot.org/uniprotkb/F1RNA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNA5-1", "url": "https://www.uniprot.org/uniprotkb/F1RNA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEALLLGVGLLLGAYVLVYYNLVKAPPCRGIASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFNLLLRVNHVGPFLLTHLLLPRLKTCAPSRVVVVSSAAHRRGRLDFTRLDRPVVGWRQELRAYADSKLANVLFTRELATQLEGTGVTCYAAHPGPVNSELFLRHVPRWLRPLLCPLAWLVLRAPRGGAQTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASKRLAGLEPGEDAESDEEPQPVDPGVPSSLSSPHPEEPAASEPYTSPQSSPDLSKVTRRIPVKAEPEPQAS", "length": 377, "header": "tr|F1RNA5-1|F1RNA5_PIG Isoform 1 of Dehydrogenase/reductase SDR family member 13 OS=Sus scrofa OX=9823 GN=DHRS13 PE=3 SV=5 CANONICAL=F1RNA5-1" }, "isoforms": [ { "isoform_ac": "F1RNA5-1", "url": "https://www.uniprot.org/uniprotkb/F1RNA5/entry", "sequence": { "sequence": "MEALLLGVGLLLGAYVLVYYNLVKAPPCRGIASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFNLLLRVNHVGPFLLTHLLLPRLKTCAPSRVVVVSSAAHRRGRLDFTRLDRPVVGWRQELRAYADSKLANVLFTRELATQLEGTGVTCYAAHPGPVNSELFLRHVPRWLRPLLCPLAWLVLRAPRGGAQTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASKRLAGLEPGEDAESDEEPQPVDPGVPSSLSSPHPEEPAASEPYTSPQSSPDLSKVTRRIPVKAEPEPQAS", "length": 377, "header": "tr|F1RNA5-1|F1RNA5_PIG Isoform 1 of Dehydrogenase/reductase SDR family member 13 OS=Sus scrofa OX=9823 GN=DHRS13 PE=3 SV=5 CANONICAL=F1RNA5-1" }, "locus": { "chromosome": "12", "start_pos": 45127255, "end_pos": 45121347, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019350.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019350.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018837.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018837.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RNA5", "url": "https://www.uniprot.org/uniprotkb/F1RNA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515168", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7GD64-1", "protein_name": "Dehydrogenase/reductase SDR family member 13", "gene_name": "Dhrs13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "METLLLGAGLLLGAYVLVYYNLVKAPPCGGIGSLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAVFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDILIHNAGISSCGRTRETFNLLLRVNHVGPFLLTHLLLPRLKSCAPSRVVVVSSAAHRRGRLDFTRLDCPVVGWQQELRAYADSKLANVLFARELANQLEGTGVTCYAAHPGPVNSELFLRHLPGWLCPILRPLAWLLLRAPQGGAQTPLYCALQEGIEPLSGRYFANCRVEEVSPAARDDQAAHRLWKATKKLAGLGPGEDDDDPEEEPQPQGPRALSSLSAPYPEKTTVSGLSHSCPGSPDLSKLTQRRIQMKARPLPD", "length": 377 }, "evidence": [ { "id": "F1RNA5", "url": "https://omabrowser.org/oma/group/F1RNA5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q17QU7-1", "protein_name": "Dehydrogenase/reductase SDR family member 13", "gene_name": "DHRS13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEALLLGVGLLLGAYVLVYYNLVKAPPCRGLASLRGRTAVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFNLLLRVNHIGPFLLTHLLLPRLKTSAPSRVVVVSSAAHRRGRLDFTRLDHPVVGWQQELRAYANSKLANVLFARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPLYCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASRKLAGLGPGEDAESDEDSQPEDPGTPSSPSSPHPEEPTVSELYPSPQSSTDRSTVTCRIPVKAELEPQAC", "length": 377 }, "evidence": [ { "id": "F1RNA5", "url": "https://omabrowser.org/oma/group/F1RNA5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54I93-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGLDENEIINNDCNIGNDNNNNSNIILNRQLVVIVTGSSDGLGKVVSGMLAKTNYFVILANRDLIKAKLVLDEILSTTPNNKNVISMKLDLSSFDSIKEFVNQFEKLNLQLDVLINNAGIYTPPFSLPEGFESQLMVNHLGPFLLTNLLINKFTENARIINLSSIAHKNSEIFNVEDLSCKSIDSYNAIKRYSNSKLYAILFTKELNRIFKKNNSKIIALSLHPGVISTTNLFKNIPNYIKLLLTISKPFTTTINTASTAIYRLAVGADPELPLLTGGEYFNINVLVDPIPQALSQENWRLLWAKSCEYCKIDDIGK", "length": 317 }, "evidence": [ { "id": "F1RNA5", "url": "https://omabrowser.org/oma/group/F1RNA5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5SS80-1", "protein_name": "Dehydrogenase/reductase SDR family member 13", "gene_name": "Dhrs13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RNG5", "url": 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Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RNG5", "url": "https://www.uniprot.org/uniprotkb/F1RNG5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response-inhibiting cell surface receptor signaling pathway", "id": "GO:0002767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002767", "evidence": [ { "database": "UniProtKB", "id": "F1RNG5", "url": "https://www.uniprot.org/uniprotkb/F1RNG5" } ], "pmid": "" }, { "name": "cytokine-mediated signaling 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"n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RNG5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 254, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RNG5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RNG5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RNG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNG5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 100, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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"url": "https://www.uniprot.org/uniprotkb/F1RNG8/entry", "sequence": { "sequence": "MAATGESELPAGAAVAEPAPSPACRFFLEGRCRFGARCRQPHPGAPAPSQPRGEAEAEGRAKKPPLRTAAAVIQRIRWDPRLDPADFSVGYIDRFLGVREEPFLSFCWDEPLAALGPGVLAVPQHRVRYFRFRGSLVWDRASRTDLVFGSGLATGRGPTILDALDGGDAHETGCANGGENAHEAGGESDGGGAHRTGCANGGEDAHGGRGESDGGGAHDDRDWAGDASDGKNAHGILDALRDRDVDREGDKLDGAAVTHLGTVTGKRVQSVCTGLQDGGGPEAGRLALEGELAARAQEQELSEELPFVAAPGKPSEEGLVKTQVEWGLGVWPADSGLARALGPRQPRPTHFVALMVSEPELQAGVAEAQEELVRAAPNCAAFAVPSQALHLTLALLRLAGPGEEAAAVHTLRSALAAPGLQVPPTLRFRHLVLLGPHVLCAPPTPSLDSMAQELSQRLEDEGLRLVQPLGGLHPHLTLLKVPQGSQVCLPKPGFSPRQELGSQPLRHLCLCRVGRAGAAYQTVAEIPLGSQP", "length": 532, "header": "tr|F1RNG8-1|F1RNG8_PIG Isoform 1 of Leukocyte receptor cluster member 9 OS=Sus scrofa OX=9823 GN=LENG9 PE=4 SV=2 CANONICAL=F1RNG8-1" }, "locus": { "chromosome": "6", "start_pos": 58860113, "end_pos": 58858518, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003630.4", "url": 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"MNILPKKSWHVRNKDNVARVRRDEAQAREEEKERERRVLLAQQEARTEFLRKKARHQNSLPALEAAEAGAPRSGPVDLFRELLEEGKGLSRGNKEYEEEKRQEKERQEKALGILTYLGQSAAEAQTQPPWYQLPPGQGTPSPGAGRDEKIKNRLDPLREMQKHLGKKRKQSRDDSSHSGKEKEPPVKQWPTEPPSLDRLRAERLRREAAERARAEALLARVRGTAAQEHRPEEEVDERQRRYNSQFNPQLARRPRRQELPPAH", "length": 263, "header": "tr|F1RNH2-1|F1RNH2_PIG Isoform 1 of Leukocyte receptor cluster member 1 OS=Sus scrofa OX=9823 GN=LENG1 PE=4 SV=2 CANONICAL=F1RNH2-1" }, "isoforms": [ { "isoform_ac": "F1RNH2-1", "url": "https://www.uniprot.org/uniprotkb/F1RNH2/entry", "sequence": { "sequence": "MNILPKKSWHVRNKDNVARVRRDEAQAREEEKERERRVLLAQQEARTEFLRKKARHQNSLPALEAAEAGAPRSGPVDLFRELLEEGKGLSRGNKEYEEEKRQEKERQEKALGILTYLGQSAAEAQTQPPWYQLPPGQGTPSPGAGRDEKIKNRLDPLREMQKHLGKKRKQSRDDSSHSGKEKEPPVKQWPTEPPSLDRLRAERLRREAAERARAEALLARVRGTAAQEHRPEEEVDERQRRYNSQFNPQLARRPRRQELPPAH", "length": 263, "header": "tr|F1RNH2-1|F1RNH2_PIG Isoform 1 of Leukocyte receptor cluster member 1 OS=Sus scrofa OX=9823 GN=LENG1 PE=4 SV=2 CANONICAL=F1RNH2-1" }, "locus": { "chromosome": "6", "start_pos": 55975588, "end_pos": 55970671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003626.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003626.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003541.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003541.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 139, "start_aa": "Thr", "end_pos": 139, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr139", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RNH2", "url": "https://www.uniprot.org/uniprotkb/F1RNH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521135", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521135", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1P8B457-1", "protein_name": "Leukocyte receptor cluster-like protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGGHGGLNILPQKRWNVYNFDNREKVRKEEEAAAREEQIKREEARKRDAESRLEVLRNVRGLAPLKRASPEAEKGKDEAVVAAAVVKSTAVVVESVESEEPKTGHINLFEGIRIFDPIEIKKNDKPADEEDQRRKKMRKEAAATARASAKDAAARAGDPDEEKYRLGYGVAGKGVKRPWYLEKRNDENDSVRGEDDDGGCGGYEAKKKKMSGKKSLKELREERLKRERVEKERERALFMKQSQRAGGFSRRR", "length": 252 }, "evidence": [ { "id": "F1RNH2", "url": "https://omabrowser.org/oma/group/F1RNH2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "D3ZER8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "Leng1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNILPKKSWHVRNKDNVARVRRDEAQAREEEKERERRVLLAQQEARTEFLRKKARGRNSLPELEAADQGAPCSGPVDLFRELLEEGKGVPRGNKEHEEEKRQEKERQEKALGILTYLGQSAAEAQTQPPWYQLPPGQKGCPPGPSPDEKIKNRLDPLREMQKHLGKKRHSSESHPSREERPPKQRPREPPSLEKLRAERLQREAAERARAEALLARVQGQVSQQGQVEMEETDERKRRYNSQFNPQLARRPRQQNPTPPH", "length": 260 }, "evidence": [ { "id": "F1RNH2", "url": "https://omabrowser.org/oma/group/F1RNH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3T0Z5-1", "protein_name": "Leukocyte receptor cluster member 1 homolog", "gene_name": "LENG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNILPKKSWHVRNKDNVARVRRDEARAREEEKERERRVLLAQQEARTEFLRKKARHQNWLPALEAAEAGAPGSSGPVDLFRELLEEGKAVTKGNKEYEEEKRQEKERQEKALGILTYLGQSAAEAQTQPPWYQLPPRQGGPASGPGPDERIKSRLDPLREMQKHLGKKRKHSGDSGGHSTKEKAAPEKQRPKGPPSLEQLRADRLRREAAERARAEALLARVGGTAAPEEQPEEVDERRRRYNSQFNPQLARRPRRQDPPVAP", "length": 263 }, "evidence": [ { "id": "F1RNH2", "url": "https://omabrowser.org/oma/group/F1RNH2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96BZ8-1", "protein_name": "Leukocyte receptor cluster member 1", "gene_name": "LENG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNILPKKSWHVRNKDNVARVRRDEAQAREEEKERERRVLLAQQEARTEFLRKKARHQNSLPELEAAEAGAPGSGPVDLFRELLEEGKGVIRGNKEYKEEKRQEKERQEKALGILTYLGQSAAEAQTQPPWYQLPPGRGGPPPGPAPDEKIKSRLDPLREMQKHLGKKRQHGGDEGSRSRKEKEGSEKQRPKEPPSLDQLRAERLRREAAERSRAEALLARVQGRALQEGQPEEDETDDRRRRYNSQFNPQLARRPRQQDPHLTH", "length": 264 }, "evidence": [ { "id": "F1RNH2", "url": "https://omabrowser.org/oma/group/F1RNH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DB98-1", "protein_name": "Leukocyte receptor cluster member 1 homolog", "gene_name": "Leng1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNILPKKSWHVRNKDNVARVRRDEAQAREEEKERERRVLLAQQEARTEFLRKKARQRNSVPELEAADPGAPSSGPVDLFRELLEERKGVPRGNKEHEEEKRREKERQEKALGILTYLGQSAAEAQTQPPWYQLPPGQKDCCPPGPSPDEKIKNRLDPLKEMQKHLAKKRHSSESRPSREERPQKQRPREPPSLEKLRAERLQREAAERARAEALLARVQGQVSQQGQVEAEETDERRRRYNSQFNPQLARRPRQQNPTPAH", "length": 261 }, "evidence": [ { "id": "F1RNH2", "url": "https://omabrowser.org/oma/group/F1RNH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VH00-1", "protein_name": "CBF1-interacting co-repressor CIR N-terminal domain-containing protein", "gene_name": "Dmel\\CG12818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNILPKKRWHVRTKENIARVRRDQAAAAAEEKVRQEKLEFAESEARINFLRRQSGLPEKASKESREESQCSTETTKGVDLFADYKARVKTTNKDLEKEQKEEQEKYEKQIGYLTYLGQDTNEALKVRSWYELAPKRPEVGDPTATETHHKQKLAHDPLTLINALLPPEKKDPKKATKRIRERTPAPSQEPSIPHKDKKSKKDKKKHKSKNGSRETLLAEERIKREKLETLRRERMRRETAERQRSEALFAPKELPVAASAESTPASTPKVVQKYNSQFNPELAKQNML", "length": 288 }, "evidence": [ { "id": "F1RNH2", "url": "https://omabrowser.org/oma/group/F1RNH2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RNH2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 263, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RNH2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RNH2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RNH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNH2" }, { "id": "SM01083", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01083" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CBF1-interacting co-repressor CIR N-terminal", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 44, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 139 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RNI6-1", "uniprot_ac": "F1RNI6", "uniprot_id": "F1RNI6_PIG", "mass": { "chemical_mass": 25699.0, "monoisotopic_mass": 25699.0 }, "refseq": {}, "gene_names": [ { "name": "VSTM1", "type": "recommended", "evidence": [ { "id": "F1RNI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNI6" } ] } ], "protein_names": [ { "name": "V-set and transmembrane domain containing 1", "type": "synonym", "evidence": [ { "id": "F1RNI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNI6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNI6", "url": "https://www.uniprot.org/uniprotkb/F1RNI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VSTM1", "url": "https://www.uniprot.org/uniprotkb/F1RNI6", "locus": { "chromosome": "6", "start_pos": 56096154, "end_pos": 56076293, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000033542", "url": "https://www.ensembl.org/id/ENSSSCG00000033542" } ] } } ], "crossref": [ { "id": "F1RNI6", "url": "https://alphafold.ebi.ac.uk/entry/F1RNI6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033542", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033542", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622306", "url": "https://www.ncbi.nlm.nih.gov/gene/100622306", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622306", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622306", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RNI6", "url": "https://www.orthodb.org/?gene=F1RNI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF180", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF180", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AGC2", "url": "https://www.uniprot.org/uniprotkb/A0A287AGC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNI6", "url": "https://www.uniprot.org/uniprotkb/F1RNI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNI6-1", "url": "https://www.uniprot.org/uniprotkb/F1RNI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSKILPLLCLGLCLGYEDEKKHEKLPKPQLHALPSSEIKRHSSVTFRCQSEVQNVTFMLGKLQDSGYRREQNTGRQDAEFLLVNLDSEDAGQYFCAYRTTVSQEWSEESDHLQLTVTDDRGGRGPPPAKTDTKAIFVAAFSCLSLLLLFFAIFFIYRCSQDGSAPEESPQRTIHPKQEAAGLCKLERISESNEDPLGVTYAQLNTNALSEAASVPAEDPPEAHDYATLKV", "length": 231, "header": "tr|F1RNI6-1|F1RNI6_PIG Isoform 1 of V-set and transmembrane domain containing 1 OS=Sus scrofa OX=9823 GN=VSTM1 PE=4 SV=5 CANONICAL=F1RNI6-1" }, "isoforms": [ { "isoform_ac": "A0A287AGC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGC2/entry", "sequence": { "sequence": "MVSKILPLLCLEKLPKPQLHALPSSEIKRHSSVTFRCQSEVQNVTFMLGKLQDSGYRREQNTGRQDAEFLLVNLDSEDAGQYFCAYRTTVSQEWSEESDHLQLTVTDDRGGRGPPPAKTDTKAIFVAAFSCLSLLLLFFAIFFIYRCSQDGSAPEESPQRTIHPKQEAAGLCKLERISESNEDPLGVTYAQLNTNALSEAASVPAEDPPEAHDYATLKV", "length": 219, "header": "tr|A0A287AGC2-1|A0A287AGC2_PIG Computationally mapped isoform of V-set and transmembrane domain containing 1 OS=Sus scrofa OX=9823 GN=VSTM1 PE=4 SV=2 CANONICAL=F1RNI6-1" }, "locus": { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RNL1-1", "uniprot_ac": "F1RNL1", "uniprot_id": "F1RNL1_PIG", "mass": { "chemical_mass": 74309.0, "monoisotopic_mass": 74309.0 }, "refseq": { "ac": "XP_013850745", "name": "zinc finger protein 432 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850745" }, "gene_names": [ { "name": "ZNF432", "type": "recommended", "evidence": [ { "id": "F1RNL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNL1" } ] }, { "name": "ZNF432", "type": "synonym", "evidence": [ { "id": "XP_013850745", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850745" } ] } ], "protein_names": [ { "name": "Zinc finger protein 432", "type": "recommended", "evidence": [ { "id": "F1RNL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNL1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 432 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013850745", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850745" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF432", "url": "https://www.uniprot.org/uniprotkb/F1RNL1", "locus": {} } ], "crossref": [ { "id": "F1RNL1", "url": 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"IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624217", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624217", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HEDFHSA", "url": "https://omabrowser.org/oma/group/HEDFHSA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RNL1", "url": "https://www.orthodb.org/?gene=F1RNL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013850745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850745", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNL1-1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIQAQGSLSFRDVAVDFTWEEWQLLTPAQKDLFRDVTLENYRNLVAVAGYQVSKPAALAKLERREEPWTRAEEAPSGTCEETGKIGNQLPGDWENQRMLKGIDQYQEYNALGNPVPQSKSHFPFRQNSDMLEFYIKTLKSNLILVSQSQSYDIKNSTECNGDGKSFLHAKHEEFHLAVKCPVSAKPISNKSQNIKHQRTHNTEKTHVCSECGKAFVKKSQLTDHQRVHTGEKPYGCSMCTKVFSRKSRLNEHQRIHKREKSFICSDCGKVFTMKSRLIEHQRTHTGEKPYVCNECGKGFPGKRNLIVHQRNHTGEKCYVCGECGKGFTGKSMLTIHQRTHTGEKPYICSECGKGFTTKHYVIIHQRNHTGEKPYICNDCGKGFTMKCRLIEHQRTHTGEKPYVCPECGKGFPRKSNLIVHQRNHTVEKSYVCSECGKGFTVKSMLIIHQRTHTGEKPYICSECGKGFPLKSRLVVHQRTHTGEKPYRCSECGKGFIVNSGLMLHQRTHTGEKPYICNKCGKGFAFKSNLVVHQRTHTGEKPFMCSECGKGFTMKRYLVVHQQIHTGEKSYICRECGKGFVTETELILHQQTHTGEKPFACNECGKGFTVKSRLVVHQRTHTGEKPFVCSECGKAFSSKRNLIVHQRTHNGNKP", "length": 653, "header": "tr|F1RNL1-1|F1RNL1_PIG Isoform 1 of Zinc finger protein 432 OS=Sus scrofa OX=9823 GN=ZNF432 PE=3 SV=3 CANONICAL=F1RNL1-1" }, "isoforms": [ { "isoform_ac": "F1RNL1-1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1/entry", "sequence": { "sequence": "MIQAQGSLSFRDVAVDFTWEEWQLLTPAQKDLFRDVTLENYRNLVAVAGYQVSKPAALAKLERREEPWTRAEEAPSGTCEETGKIGNQLPGDWENQRMLKGIDQYQEYNALGNPVPQSKSHFPFRQNSDMLEFYIKTLKSNLILVSQSQSYDIKNSTECNGDGKSFLHAKHEEFHLAVKCPVSAKPISNKSQNIKHQRTHNTEKTHVCSECGKAFVKKSQLTDHQRVHTGEKPYGCSMCTKVFSRKSRLNEHQRIHKREKSFICSDCGKVFTMKSRLIEHQRTHTGEKPYVCNECGKGFPGKRNLIVHQRNHTGEKCYVCGECGKGFTGKSMLTIHQRTHTGEKPYICSECGKGFTTKHYVIIHQRNHTGEKPYICNDCGKGFTMKCRLIEHQRTHTGEKPYVCPECGKGFPRKSNLIVHQRNHTVEKSYVCSECGKGFTVKSMLIIHQRTHTGEKPYICSECGKGFPLKSRLVVHQRTHTGEKPYRCSECGKGFIVNSGLMLHQRTHTGEKPYICNKCGKGFAFKSNLVVHQRTHTGEKPFMCSECGKGFTMKRYLVVHQQIHTGEKSYICRECGKGFVTETELILHQQTHTGEKPFACNECGKGFTVKSRLVVHQRTHTGEKPFVCSECGKAFSSKRNLIVHQRTHNGNKP", "length": 653, "header": "tr|F1RNL1-1|F1RNL1_PIG Isoform 1 of Zinc finger protein 432 OS=Sus scrofa OX=9823 GN=ZNF432 PE=3 SV=3 CANONICAL=F1RNL1-1" }, "locus": { "chromosome": "6", "start_pos": 58150882, "end_pos": 58139204, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045309.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045309.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050732.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050732.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624217", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624217", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T5I6-1", "protein_name": "Zinc finger protein 613", "gene_name": "ZNF613", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHPQQEILSFKDVAVDFTWEEWQLLTPAQKTLYRDVMLENYSNLVSVVSKSDVLFKLEQGEERWMTEDEIHSHTWPETGNIGNHLQVDWENKKMLKGIEQYQERNTFGNPVLQSQSYFCFRQNHDMFEFYIKTLKTNSSLVIQSQSYEIKNSAKCNGDGKSFLFGKHEKCHSPVKCPVSAKPISTKSQVIKHQITHNIEKAHICSECGKAFVKKSQLTDHQRVHTGEKPYGCNLCAKVFSRKSRLNEHQRIHEREKSFICSDCGKVFITKSRLIEHQRTHTGEKPYVCSDCGKGFPGKRNLILHQRNHTGEKSYVCSECGKGFTAKSMLTIHQRTHTGEKPYICSECGKGFTTKHYVIIHQRNHTGEKPYICNECGKGFIMKSRLTEHQRIHTGEKPYMCNECGKGFSRKGNLIVHQKTHTVEKSYVCSECGKGFTLKSMLTVHQRTHTGEKPYICSECGKGFPLKSRLVVHQRTHTGEKPYRCSECGKGFVVNSALMIHQRTHTGEKPYTCNECGKEFAFKSNLVVHQRTHTGEKPFTCSECGKGFTMKRYLIVHQQIHMGEKSYICSECGKGFVMETELILHQQIHTGEKPYACSECGKGFFVKSRLVVHQRTHTGEKPFVCSDCGKGFSSKRNLLVHQRTHNGNKPLKR", "length": 652 }, "evidence": [ { "id": "F1RNL1", "url": "https://omabrowser.org/oma/group/F1RNL1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O94892-1", "protein_name": "Zinc finger protein 432", "gene_name": "ZNF432", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MINAQELLTLEDVTVEFTWEEWQLLGPFQKDLYRDVMLEIYSNLLSMGYQVSKPDALSKLERGEEPWTMEDERHSRICPENNEVDDHLQDHLENQRMLKSVEQYHEHNAFGNTASQTKSLCLFRENHDTFELYIKTLKSNLSLVNQNKSCEINNSTKFSGDGKSFLHGNYEELYSAAKFSVSTKANSTKSQVSKHQRTHEIEKNHVCSECGKAFVKKSQLTDHERVHTGEKPYGCTLCAKVFSRKSRLNEHQRIHKREKSFICSECGKVFTMKSRLIEHQRTHTGEKPYICNECGKGFPGKRNLIVHQRNHTGEKSYICSECGKGFTGKSMLIIHQRTHTGEKPYICSECGKGFTTKHYVIIHQRNHTGEKPYICNECGKGFTMKSRMIEHQRTHTGEKPYICSECGKGFPRKSNLIVHQRNHTVEKSYLCSECGKGFTVKSMLIIHQRTHTGEKPYTCSECGKGFPLKSRLIVHQRTHTGEKPYRCSECGKGFIVNSGLMLHQRTHTGEKPYICNECGKGFAFKSNLVVHQRTHTGEKPFMCSECGKGFTMKRYLIVHQQIHTEEKSCICSECGRGFAKETELALHKQVHTGEKPYGCNECGKGFTMKSRLIVHQRTHTGEKPFVCSECRKAFSSKRNLIVHQRTHNGNKP", "length": 652 }, "evidence": [ { "id": "F1RNL1", "url": "https://omabrowser.org/oma/group/F1RNL1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear lumen", "id": "GO:0031981", "url": 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Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RNL1", "url": "https://www.uniprot.org/uniprotkb/F1RNL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, 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] } } ], "crossref": [ { "id": "F1RNL9", "url": "https://alphafold.ebi.ac.uk/entry/F1RNL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007656", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007656", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512708", "url": "https://www.ncbi.nlm.nih.gov/gene/100512708", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR034452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GTQQWAP", "url": "https://omabrowser.org/oma/group/GTQQWAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RNL9", "url": "https://www.orthodb.org/?gene=F1RNL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { 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"MDRPRALGLLLALLTLCITAGTPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGGPDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRSSRHNTTFCCRFTSFPEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHWSVTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATISTSYLCPASLHPVLPPQPLPKWATLPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPLLGPLGPRATKEDLAAR", "length": 307, "header": "tr|F1RNL9-1|F1RNL9_PIG Isoform 1 of PVR related immunoglobulin domain containing OS=Sus scrofa OX=9823 GN=PVRIG PE=4 SV=2 CANONICAL=F1RNL9-1" }, "isoforms": [ { "isoform_ac": "F1RNL9-1", "url": "https://www.uniprot.org/uniprotkb/F1RNL9/entry", "sequence": { "sequence": "MDRPRALGLLLALLTLCITAGTPEVWVQVRMEATESLSFTVRCGFLGSGSISLVTVSYGGPDGAGGTKLAVLHPTLGTQHWAPACQAHWETRSSISLTLEASEGRSSRHNTTFCCRFTSFPEGSQEACGNLSLSTDQGLAAPTPAPVLRADLAGILGVSGVFFFGSIYLLYLLRRQRHWSVTKLQPPRQNSPQTQRRASAAGQASLTSLHGPCATISTSYLCPASLHPVLPPQPLPKWATLPAHPARRPQSLARWAPPPGSVRSSFVSMENWLYAQAGTRPLHARATPSPLLGPLGPRATKEDLAAR", "length": 307, "header": "tr|F1RNL9-1|F1RNL9_PIG Isoform 1 of PVR related immunoglobulin domain containing OS=Sus scrofa OX=9823 GN=PVRIG PE=4 SV=2 CANONICAL=F1RNL9-1" }, "locus": { "chromosome": "3", "start_pos": 8232551, "end_pos": 8231238, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008396.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008396.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008177.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008177.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 143, "start_aa": "Thr", "end_pos": 143, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr143", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RNL9", "url": "https://www.uniprot.org/uniprotkb/F1RNL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K8H7-1", "protein_name": "PVR related immunoglobulin domain containing", "gene_name": "Pvrig", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRTNTQAVPATNMAQMQTLVLFSTLLILCVSAASPEVWVQVQMEATNLSFFSVHCGVLGCNHISLVTVSWKGFVDARETKLAVLHPEFGTQQWAPASQAHWETPISISVTLTLEQSKARSSLANTTFCCEFVTFPHGSRVACRDLHSSDPGLSALTPAPSLQADLAGILGTSGFFLFGFIFILCLRWWQRHRCSRKSQLSLSRTQAQMETPLPHLASIQGSFIFVDNGLYTLA", "length": 233 }, "evidence": [ { "id": "F1RNL9", "url": "https://omabrowser.org/oma/group/F1RNL9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A1B0GS01-1", "protein_name": "Poliovirus receptor related immunoglobulin domain containing", "gene_name": "Pvrig", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRTGNTQAAHATNMGQMQTLVLFSTLLTLCVSEASPEVWVQVQMEATNLSSFSVHCGVLGYSLISLVTVSCEGFVDAGRTKLAVLHPEFGTQQWAPARQAHWETPNSVSVTLTMGQSKARSSLANTTFCCEFVTFPHGSRVACRDLHRSDPGLSAPTPALNLQADLVRILGTSGVFLFGFIFILCLRWQQRHWCLSKSQPSLTSTQAQVETQPPHLASTHSSFISMENGLYALA", "length": 234 }, "evidence": [ { "id": "F1RNL9", "url": "https://omabrowser.org/oma/group/F1RNL9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MNH7-1", "protein_name": "PVR related immunoglobulin domain containing", "gene_name": "PVRIG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDRPRALGLLWVLLTLCLTAGTPEVWLQVQREATEASFTVRCGFLGSGSISLVTVSYGGPDSAGGTTLAVLHPTLGTKNWTAACRARWETSTSISLTLERAPTAAGDSSPNTTFCCKFTSFPEGSQEACGKLSASTDQELPAPSPASVLRADLAGILGVSGVLLSGCIYLLYLLCRQRHWSVMKLQPPRHGSPQTDGRTSAAGQASLTSFHVPYATAATTSNYFSPATLHPVPPPQPLPGWVPPLTHAARRPQSPGPWAPPPASARSSFVSVENRLYAQTEKRPLHAGADHISLPDRLGRKAALGPSGVR", "length": 310 }, "evidence": [ { "id": "F1RNL9", "url": "https://omabrowser.org/oma/group/F1RNL9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6DKI7-1", "protein_name": "Transmembrane protein PVRIG", "gene_name": "PVRIG", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRTEAQVPALQPPEPGLEGAMGHRTLVLPWVLLTLCVTAGTPEVWVQVRMEATELSSFTIRCGFLGSGSISLVTVSWGGPNGAGGTTLAVLHPERGIRQWAPARQARWETQSSISLILEGSGASSPCANTTFCCKFASFPEGSWEACGSLPPSSDPGLSAPPTPAPILRADLAGILGVSGVLLFGCVYLLHLLRRHKHRPAPRLQPSRTSPQAPRARAWAPSQASQAALHVPYATINTSCRPATLDTAHPHGGPSWWASLPTHAAHRPQGPAAWASTPIPARGSFVSVENGLYAQAGERPPHTGPGLTLFPDPRGPRAMEGPLGVR", "length": 326 }, "evidence": [ { "id": "F1RNL9", "url": "https://omabrowser.org/oma/group/F1RNL9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RNL9", "url": "https://www.uniprot.org/uniprotkb/F1RNL9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of T cell receptor signaling pathway", "id": "GO:0050860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050860", "evidence": [ { "database": "UniProtKB", "id": "F1RNL9", "url": "https://www.uniprot.org/uniprotkb/F1RNL9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1RNL9", "url": "https://www.uniprot.org/uniprotkb/F1RNL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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[ { "name": "Tetratricopeptide repeat domain 24", "type": "synonym", "evidence": [ { "id": "F1RP35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RP35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RP35", "url": "https://www.uniprot.org/uniprotkb/F1RP35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC24", "url": "https://www.uniprot.org/uniprotkb/F1RP35", "locus": { "chromosome": "4", "start_pos": 93500564, "end_pos": 93510815, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006479", "url": "https://www.ensembl.org/id/ENSSSCG00000006479" } ] } } ], "crossref": [ { "id": "F1RP35", "url": "https://alphafold.ebi.ac.uk/entry/F1RP35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006479", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006479", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47050", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47050", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47050:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47050:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13374", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13374", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RP35", "url": "https://www.uniprot.org/uniprotkb/F1RP35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP35-1", "url": "https://www.uniprot.org/uniprotkb/F1RP35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSLNTEDTPQEPSPSPSSSKKKKKRRKWPQQEASIRALTSAGHRALLAGQNHEALTSFQKALFLASKAPQTRDTPVLQACAFNLGAAYVETGDPARGLELLLRAQPQEKAQGGSHGDQCFNVALAYHALGDLPQALAWYHKALGHYQPLGDQGQAQAKMGACYQALGQPELAAHCLQEASQAYTQAGQPRAAALALGAAAGCLLKSGWHGVGEVVQVLEESRKLAERSPERELLGQLYNDLGLSYSQLQLFPLAAEAFQQALPLCRGPGEEATVLRNLGMTHNALGNYQEAREFHQKAANLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDTGDVKGQWQACEGLGAAEARLGQHDQALKYYKEALARCQKEPDSVRERLVAKLADAMRTHLAQGGLVPTRTLTSAPGRPQAPGGDFLVAGTPTMVGRGSAGVRHRSLGEWENELEDGHEEKEEEESVNVPEMSGAPRPELCFLPGTMNHSSLTSNRPRFAKHLLCTGVPAMDSPGPRAHLPLGGQSPLRMDDPGLLVPSGPQANRSSKQPRGIPNRNAQRRPTESGFCMIM", "length": 576, "header": "tr|F1RP35-1|F1RP35_PIG Isoform 1 of Tetratricopeptide repeat domain 24 OS=Sus scrofa OX=9823 GN=TTC24 PE=4 SV=3 CANONICAL=F1RP35-1" }, "isoforms": [ { "isoform_ac": "F1RP35-1", "url": "https://www.uniprot.org/uniprotkb/F1RP35/entry", "sequence": { "sequence": "MSSLNTEDTPQEPSPSPSSSKKKKKRRKWPQQEASIRALTSAGHRALLAGQNHEALTSFQKALFLASKAPQTRDTPVLQACAFNLGAAYVETGDPARGLELLLRAQPQEKAQGGSHGDQCFNVALAYHALGDLPQALAWYHKALGHYQPLGDQGQAQAKMGACYQALGQPELAAHCLQEASQAYTQAGQPRAAALALGAAAGCLLKSGWHGVGEVVQVLEESRKLAERSPERELLGQLYNDLGLSYSQLQLFPLAAEAFQQALPLCRGPGEEATVLRNLGMTHNALGNYQEAREFHQKAANLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDTGDVKGQWQACEGLGAAEARLGQHDQALKYYKEALARCQKEPDSVRERLVAKLADAMRTHLAQGGLVPTRTLTSAPGRPQAPGGDFLVAGTPTMVGRGSAGVRHRSLGEWENELEDGHEEKEEEESVNVPEMSGAPRPELCFLPGTMNHSSLTSNRPRFAKHLLCTGVPAMDSPGPRAHLPLGGQSPLRMDDPGLLVPSGPQANRSSKQPRGIPNRNAQRRPTESGFCMIM", "length": 576, "header": "tr|F1RP35-1|F1RP35_PIG Isoform 1 of Tetratricopeptide repeat domain 24 OS=Sus scrofa OX=9823 GN=TTC24 PE=4 SV=3 CANONICAL=F1RP35-1" }, "locus": { "chromosome": "4", "start_pos": 93508340, "end_pos": 93501668, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007097.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007097.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006905.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006905.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RP35", "url": "https://www.uniprot.org/uniprotkb/F1RP35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RP35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 576, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RP35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RP35" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 493, "end_pos": 495 }, { "start_pos": 549, "end_pos": 551 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", 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"common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255845", "url": "https://www.uniprot.org/uniprotkb/F1RP58", "locus": {} } ], "crossref": [ { "id": "F1RP58", "url": "https://alphafold.ebi.ac.uk/entry/F1RP58", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009496", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009496", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03250", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03250", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18593", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18593", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": 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"length": 1150, "header": "tr|F1RP58-1|F1RP58_PIG Isoform 1 of Cystic fibrosis transmembrane conductance regulator OS=Sus scrofa OX=9823 GN=LOC110255845 PE=1 SV=5 CANONICAL=F1RP58-1" }, "locus": { "chromosome": "11", "start_pos": 64850284, "end_pos": 64720614, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010411.6", "url": "https://www.ensembl.org/id/ENSSSCT00000010411.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010140.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010140.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RP58", "url": "https://www.uniprot.org/uniprotkb/F1RP58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "intracellularly ATP-gated chloride channel activity", "id": "GO:0005260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005260", "evidence": [ { "database": "UniProtKB", "id": "F1RP58", "url": "https://www.uniprot.org/uniprotkb/F1RP58" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": 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UDP-4-keto-6-deoxyglucose is a mimic of the reaction intermediate of UXS1 and acts as an enzyme-rescue metabolite to promote the completion of UXS1 catalytic cycle when NAD(+) levels are low. Under low NAD(+) conditions, UXS1 forms an inactive UDP-4-ketoxylose intermediate bound to NADH, impairing the synthesis of specific glycans that are essential for skeletal development. UDP-4-keto-6-deoxyglucose is used by the inactive NADH-bound UXS1 to produce UDP-6-deoxyglucose and NAD(+) within the catalytic pocket of UXS1, regenerating the essential cofactor NAD(+).", "evidence": [ { "database": "UniProtKB", "id": "F1RP60", "url": "https://www.uniprot.org/uniprotkb/F1RP60#function" }, { "database": "UniProtKB", "id": "ARBA00094174", "url": "https://www.uniprot.org/uniprotkb/ARBA00094174#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RP60", "url": "https://www.uniprot.org/uniprotkb/F1RP60" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TGDS", "url": "https://www.uniprot.org/uniprotkb/F1RP60", "locus": { "chromosome": "11", "start_pos": 63695638, "end_pos": 63716568, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": 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"MSFCLTELHLWSLKNTLHIGDRDIGIYQYYDKKEPPERGNLEEKQKLAESRDFPWTLKNRRPEKLRDSLKELEELMQNSQCVLSKWKSKYVCQLLFGSGVLVSLSLSGPQLEKVVIDRSLVGKLISDTISDALFTDSFIILSFLAQNKLCFIQFTKKVGSPDINKRLEKLSALDYKISYYEIPGPVNRTTQRHLAINCVQDRVVCWWPLVSDDAWPWAPVSSEKDRANLLLLGYAQGRLEVLSSVRTEWDPLDVCFGTKQPYQVLTVECSSSVDKEPMADSCIYECVRNKIQCVSVTRIPLRSKAISCCRNVTEDKLVLGCEDSSVILYETHRRVTFLAQAELLPSLMSCHPSGAILLVGSNQGELQIFDMALSPISIQLLAEDRSPKETLQFKKFFDVSSSLVQMQWIAPQVVSKKPESGNIYNLLFLRFDRGPLGVLLFKLGIFTQGQLGLLDVIFQYIHCDEICEAINILSSMNWDILGYQCFISMSAIINHLLRQKLTPEREAQLEASLGTFYAPTRPLLDTTILEYRDQVSKYARRFFHHLLRYQRFEKAFLLAVDIGARDLFMDIHYLALDKGELALAEVARKRASDIDAESITSGVELLGPLDRGDMLNEVFLGQSLTVQGEDTFPDNLPPFCSIYRHITQQRTLNVSADGEMRGDCIGQEIGHGGSLRMVHLGLV", "length": 683, "header": "tr|A0A8W4FMR0-1|A0A8W4FMR0_PIG Computationally mapped isoform of WD repeat containing planar cell polarity effector OS=Sus scrofa OX=9823 GN=WDPCP PE=3 SV=1 CANONICAL=A0A8W4FQL6-1" }, "locus": { "chromosome": "3", "start_pos": 78856890, "end_pos": 78523040, "strand": "-", "evidence": [ 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"header": "tr|A0A8W4FQL6-1|A0A8W4FQL6_PIG Isoform 1 of WD repeat containing planar cell polarity effector OS=Sus scrofa OX=9823 GN=WDPCP PE=3 SV=1 CANONICAL=A0A8W4FQL6-1" }, "locus": { "chromosome": "3", "start_pos": 78693175, "end_pos": 78268922, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106192.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106192.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080695.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080695.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQL6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FQL6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQL6" } ], "pmid": "" }, { "name": "axonemal basal plate", "id": "GO:0097541", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097541", "evidence": [ { 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"https://www.uniprot.org/uniprotkb/F1RL39" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CABIN1", "url": "https://www.uniprot.org/uniprotkb/F1RL39", "locus": { "chromosome": "14", "start_pos": 49686196, "end_pos": 49787688, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010062", "url": "https://www.ensembl.org/id/ENSSSCG00000010062" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010062", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010062", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13839", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13839", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157110", "url": "https://www.ncbi.nlm.nih.gov/gene/100157110", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RL39", "url": "https://www.orthodb.org/?gene=F1RL39", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15502", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15502", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15502:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15502:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2559584", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559584", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013838592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013838592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZXG6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCB4", "url": "https://www.uniprot.org/uniprotkb/A0A287BCB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIS7", "url": "https://www.uniprot.org/uniprotkb/A0A287BIS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCK5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI61", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI61-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RL39-1", "url": "https://www.uniprot.org/uniprotkb/F1RL39-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIRIAALNASSTVEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEARLLREAVSSGDEKEGLKHPGLMLKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLTRVPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQPCLRKDSLRMFLKCDMSIHDVSVSAAESQAIVDEALGLRRRRQALTIREKEPDLKLVQPIPFLTWKCLGESLLATYNHLSTCEPPRPSLGKRIDLSDYQDPSQPLLSSVGVAPVSATQPSPASASPAATVAEPVLSYTPVATASFPLHSPSLLETGLPAGDVSGGDKSKKGVKRKKISEESGETAKRRSARVRNTKCKKEEKVDFQELLVKFLPSRLRKLDPEEEDDPFNNYEVPSEAKLESFPSVGPHRLSFDSATFMESERQDVHAFLLENLTNGGILELLVRYLKSMGHRFLLRWPPGLAEVVLSIYHSWRRHSASLPNPLLRDCSSQHIKDMMLMSLSCMELQLDQWLLTKGRSSAVSPRSCPAGVVNSRFGPDFPGTHFLGDLLQLSFASSQRDLFEDGWLEFVVRVYWLKARFLALQGDMEQALENYDICTEMLQRSSAICTQPGAQQRDIVIRLPNLHNDSVVSLEEIDKNLRSLERCQSLEETQRLYEAGDHKAVVRLLRPTLCPSGFDRAKHLEFMTSVPERPAQLLLLQDSLLRLEDHQQCFECSDVALNEAVQQMVNASDATAKEEWVATVTQLLLGIEQALSADSGGGILKDSSSTTGLTRLTNNLIQVIDCSMAVQEEPKEPHVSSVLPWIILHRIIRQEEDTFHSLCHQQQLQNPVDEVMAEPPMLPSSLMLLNTAHEYLGRRSWCCNSDGALLRFYVRVLQKELAASPSEDTHPYKEELETALEQCFYCLYSYPSKKSKARYLEEHSAQQVDLIWEDALFMFEYFKPKTLPEFDSYKTSTVSADLANLLKRIATIVPRTERPALSLDKVSAYIEGTSAEVPCLPEGADPSPPVVNELYYLLADYHFKNKEQSKAIKFYMHDICICPNRFDSWAGMALARASRIQDKLNSNELKSDGPIWKHATPVLNCFRRALEIDSSNLSLWIEFGTMSYALHSFASRQLKQWRPELPPELVQQMEDRRDSMLETARHCFTSAARCEGDGDEEEWLIHYMLGKVAEKQQQPPTVYLRHYRQAGHYLHEEAARYPKKIHYHNPPELAMEALEVYFRLHASILKLLGRPDSGVGAEVLVSFMKEAAEGPFARGEEKNAPKASEKEKACLVDEDSHSSAGTLPGPGASLPSSGPGLTSPPYTATPIDHDYVKCKKPHQQATPDERSQDSTAVALSDSSSTQDFFNEPSSSLEGSRKPLTEKRPPAPSSHAGPPGKDLQGPAEERGKPEEPLETMEGIRVTEQGSQKPAADPSGPGTPAKPPVSAAATWDGRRRGEPPGEPAAFPQGLPAGAEEQRQFLTEQCVASLRLCLSRFPQHYKSLYRLAFLYTYSKTHRNLQWARDVLLGSGIPWQQLQHMPAQGLFCERNKTNFFNGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPEEELAGEGAEGTGFPPQEPPSSEQVKTAPEGPPAEPHCWPAEATSRTGTEPTCSQGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 2184, "header": "tr|F1RL39-1|F1RL39_PIG Isoform 1 of Calcineurin-binding protein cabin-1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=4 CANONICAL=F1RL39-1" }, "isoforms": [ { "isoform_ac": "A0A286ZXG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXG6/entry", "sequence": { "sequence": "MIRIAALNASSTVEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEARLLREAVSSGDEKEGLKHPGLMLKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLTRVPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQPCLRKDSLRMFLKCDMSIHDVSVSAAESQAIVDEALGLRRRRQALTIREKEPDLKLVQPIPFLTWKCLGESLLATYNHLSTCEPPRPSLGKRIDLSDYQDPSQPLLSSVGVAPVSATQPSPASASPAATVAEPVLSYTPVATASFPLHSPSLLETGLPAGDVSGGDKSKKGVKRKKISEESGETAKRRSARVRNTKCKKEEKVDFQELLVKFLPSRLRKLDPEEEDDPFNNYEVPSEAKLESFPSVGPHRLSFDSATFMESERQDVHAFLLENLTNGGILELLVRYLKSMGHRFLLRWPPGLAEVVLSIYHSWRRHSASLPNPLLRDCSSQHIKDMMLMSLSCMELQLDQWLLTKGRSSAVSPRSCPAGVVNSRFGPDFPGTHFLGDLLQLSFASSQRDLFEDGWLEFVVRVYWLKARFLALQGDMEQALENYDICTEMLQRSSAICTQPGAQQRDIVIRLPNLHNDSVVSLEEIDKNLRSLERCQSLEETQRLYEAGDHKAVVRLLRPTLCPSGFDRAKHLEFMTSVPERPAQLLLLQDSLLRLEDHQQCFECSDVALNEAVQQMVNASDATAKEEWVATVTQLLLGIEQALSADSGGGILKDSSSTTGLTRLTNNLIQVIDCSMAVQEEPKEPHVSSVLPWIILHRIIRQEEDTFHSLCHQQQLQNPVDEVMAEPPMLPSSLMLLNTAHEYLGRRSWCCNSDGALLRFYVRVLQKELAASPSEDTHPYKEELETALEQCFYCLYSYPSKKSKARYLEEHSAQQVDLIWEDALFMFEYFKPKTLPEFDSYKTSTVSADLANLLKRIATIVPRTERPALSLDKVSAYIEGTSAEVPCLPEGADPSPPVVNELYYLLADYHFKNKEQSKAIKFYMHDICICPNRFDSWAGMALARASRIQDKLNSNELKSDGPIWKHATPVLNCFRRALEIDSSNLSLWIEFGTMSYALHSFASRQLKQWRPELPPELVQQMEDRRDSMLETARHCFTSAARCEGDGDEEEWLIHYMLGKVAEKQQQPPTVYLRHYRQAGHYLHEEAARYPKKIHYHNPPELAMEALEVYFRLHASILKLLGRPDSGVGAEVLVSFMKEAAEGPFARGEEKNAPKASEKEKACLVDEDSHSSAGTLPGPGASLPSSGPGLTSPPYTATPIDHDYVKCKKPHQQATPDERSQDSTAVALSDSSSTQDFFNEPSSSLEGSRKPLTEKRPPAPSSHAGPPGKPEEPLETMEGIRVTEQGSQKPAADPSGPGTPAKPPVSAAATWDGRRRGEPPGEPAAFPQGLPAGAEEQRQFLTEQCVASLRLCLSRFPQHYKSLYRLAFLYTYSKTHRNLQWARDVLLGSGIPWQQLQHMPAQGLFCERNKTNFFNGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPGEPLPEELAGEGAEGTGFPPQEPPSSEQVKTAPEGPPAEPHCWPAEATSRTGTEPTCSQGKANRPEQGRGHELSSAPWVHPTGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 2200, "header": "tr|A0A286ZXG6-1|A0A286ZXG6_PIG Computationally mapped isoform of Calcineurin-binding protein cabin-1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=3 CANONICAL=F1RL39-1" }, "locus": { "chromosome": "14", "start_pos": 49777245, "end_pos": 49686392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058963.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058963.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036213.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036213.3" } ] } }, { "isoform_ac": "A0A287BCB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCB4/entry", "sequence": { "sequence": "MIRIAALNASSTVEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEARLLREAVSSGDEKEGLKHPGLMLKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLTRVPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQPCLRKDSLRMFLKCWKCLGESLLATYNHLSTCEPPRPSLGKRIDLSDYQDPSQPLLSSVGVAPVSATQPSPASASPAATVAEPVLSYTPVATASFPLHSPSLLETGLPAGDVSGGDKSKKGVKRKKISEESGETAKRRSARVRNTKCKKEEKVDFQELLVKFLPSRLRKLDPEEEDDPFNNYEVPSEAKLESFPSVGPHRLSFDSATFMESERQDVHAFLLENLTNGGILELLVRYLKSMGHRFLLRWPPGLAEVVLSIYHSWRRHSASLPNPLLRDCSSQHIKDMMLMSLSCMELQLDQWLLTKGRSSAVSPRSCPAGVVNSRFGPDFPGTHFLGDLLQLSFASSQRDLFEDGWLEFVVRVYWLKARFLALQGDMEQALENYDICTEMLQRSSAICTQPGAQQRDIVIRLPNLHNDSVVSLEEIDKNLRSLERCQSLEETQRLYEAGDHKAVVRLLRPTLCPSGFDRAKHLEFMTSVPERPAQLLLLQDSLLRLEDHQQCFECSDVALNEAVQQMVNASDATAKEEWVATVTQLLLGIEQALSADSGGGILKDSSSTTGLTRLTNNLIQVIDCSMAVQEEPKEPHVSSVLPWIILHRIIRQEEDTFHSLCHQQQLQNPVDEVMAEPPMLPSSLMLLNTAHEYLGRRSWCCNSDGALLRFYVRVLQKELAASPSEDTHPYKEELETALEQCFYCLYSYPSKKSKARYLEEHSAQQVDLIWEDALFMFEYFKPKTLPEFDSYKTSTVSADLANLLKRIATIVPRTERPALSLDKVSAYIEGTSAEVPCLPEGADPSPPVVNELYYLLADYHFKNKEQSKAIKFYMHDICICPNRFDSWAGMALARASRIQDKLNSNELKSDGPIWKHATPVLNCFRRALEIDSSNLSLWIEFGTMSYALHSFASRQLKQWRPELPPELVQQMEDRRDSMLETARHCFTSAARCEGDGDEEEWLIHYMLGKVAEKQQQPPTVYLRHYRQAGHYLHEEAARYPKKIHYHNPPELAMEALEVYFRLHASILKLLGRPDSGVGAEVLVSFMKEAAEGPFARGEEKNAPKASEKEKACLVDEDSHSSAGTLPGPGASLPSSGPGLTSPPYTATPIDHDYVKCKKPHQQATPDERSQDSTAVALSDSSSTQDFFNEPSSSLEGSRKPLTEKRPPAPSSHAGPPGKDLQGPAEERGKPEEPLETMEGIRVTEQGSQKPAADPSGPGTPAKPPVSAAATWDGRRRGEPPGEPAAFPQGLPAGAEEQRQFLTEQCVASLRLCLSRFPQHYKSLYRLAFLYTYSKTHRNLQWARDVLLGSGIPWQQLQHMPAQGLFCERNKTNFFNGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPGEPLPEELAGEGAEGTGFPPQEPPSSEQVKTAPEGPPAEPHCWPAEATSRTGTEPTCSQEGREEAWEPASQLSSAPWVHPTGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 2160, "header": "tr|A0A287BCB4-1|A0A287BCB4_PIG Computationally mapped isoform of Calcineurin binding protein 1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=3 CANONICAL=F1RL39-1" }, "locus": { "chromosome": "14", "start_pos": 49777245, "end_pos": 49686392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048304.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048304.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053989.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053989.3" } ] } }, { "isoform_ac": "A0A287BIS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIS7/entry", "sequence": { "sequence": "MIRIAALNASSTVEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEARLLREAVSSGDEKEGLKHPGLMLKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLTRVPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQPCLRKDSLRMFLKCDMSIHDVSVSAAESQAIVDEALGLRRRRQALTIREKEPDLKLVQPIPFLTWKCLGESLLATYNHLSTCEPPRPSLGKRIDLSDYQDPSQPLLSSVGVAPVSATQPSPASASPAATVAEPVLSYTPVATASFPLHSPSLLETGLPAGDVSGGDKSKKGVKRKKISEESGETAKRRSARVRNTKCKKEEKVDFQELLVKFLPSRLRKLDPEEEDDPFNNYEVPSEAKLESFPSVGPHRLSFDSATFMESERQDVHAFLLENLTNGGILELLVRYLKSMGHRFLLRWPPGLAEVVLSIYHSWRRHSASLPNPLLRDCSSQHIKDMMLMSLSCMELQLDQWLLTKGRSSAVSPRSCPAGVVNSRFGPDFPGTHFLGDLLQLSFASSQRDLFEDGWLEFVVRVYWLKARFLALQGDMEQALENYDICTEMLQRSSAICTQPGAQQRDIVIRLPNLHNDSVVSLEEIDKNLRSLERCQSLEETQRLYEAGDHKAVVRLLRPTLCPSGFDRAKHLEFMTSVPERPAQLLLLQDSLLRLEDHQQCFECSDVALNEAVQQMVNASDATAKEEWVATVTQLLLGIEQALSADSGGGILKDSSSTTGLTRLTNNLIQVIDCSMAVQEEPKEPHVSSVLPWIILHRIIRQEEDTFHSLCHQQQLQNPVDEVMAEPPMLPSSLMLLNTAHEYLGRRSWCCNSDGALLRFYVRVLQKELAASPSEDTHPYKEELETALEQCFYCLYSYPSKKSKARYLEEHSAQQVDLIWEDALFMFEYFKPKTLPEFDSYKTSTVSADLANLLKRIATIVPRTERPALSLDKVSAYIEGTSAEVPCLPEGADPSPPVVNELYYLLADYHFKNKEQSKAIKFYMHDICICPNRFDSWAGMALARASRIQDKLNSNELKSDGPIWKHATPVLNCFRRALEIDSSNLSLWIEFGTMSYALHSFASRQLKQWRPELPPELVQQMEDRRDSMLETARHCFTSAARCEGDGDEEEWLIHYMLGKVAEKQQQPPTVYLRHYRQAGHYLHEEAARYPKKIHYHNPPELAMEALEVYFRLHASILKLLGRPDSGVGAEVLVSFMKEAAEGPFARGEEKNAPKASEKEKACLVDEDSHSSAGTLPGPGASLPSSGPGLTSPPYTATPIDHDYVKCKKPHQQATPDERSQDSTAVALSDSSSTQDFFNEPSSSLEGSRKPLTEKRPPAPSSHAGPPGKDLQGPAEERGKPEEPLETMEGIRVTEQGSQKPAADPSGPGTPAKPPVSAAATWDGRRRGEPPGEPAAFPQGLPAGAEEQRQFLTEQCVASLRLCLSRFPQHYKSLYRLAFLYTYSKTHRNLQWARDVLLGSGIPWQQLQHMPAQGLFCERNKTNFFNGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPGEPLPEELAGEGAEGTGFPPQEPPSSEQVKTAPEGPPAEPHCWPAEATSRTGTEPTCSQGKVVRGQEGREEAWEPASQLSSAPWVHPTGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 2217, "header": "tr|A0A287BIS7-1|A0A287BIS7_PIG Computationally mapped isoform of Calcineurin-binding protein cabin-1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=3 CANONICAL=F1RL39-1" }, "locus": { "chromosome": "14", "start_pos": 49777245, "end_pos": 49686392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050972.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050972.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056440.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056440.3" } ] } }, { "isoform_ac": "A0A8W4FCK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCK5/entry", "sequence": { "sequence": "MRGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPEEELAGEGAEGTGFPPQEPPSSEQVKTAPEGPPAEPHCWPAEATSRTGTEPTCSQGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 606, "header": "tr|A0A8W4FCK5-1|F1RL39_PIG Computationally mapped isoform of Calcineurin-binding protein cabin-1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=1 CANONICAL=F1RL39-1" }, "locus": { "chromosome": "14", "start_pos": 49697083, "end_pos": 49686392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077045.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077045.1" } ] } }, { "isoform_ac": "A0A8W4FI61-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI61/entry", "sequence": { "sequence": "MACVLLGANRVNMCNAAFGERRGAEPCAHPCRPTHMGQVQWQRPCSHAAPSTPQGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPDRPEQGRGHELSSAPWVHPTGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 623, "header": "tr|A0A8W4FI61-1|F1RL39_PIG Computationally mapped isoform of Calcineurin-binding protein cabin-1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=1 CANONICAL=F1RL39-1" }, "locus": { "chromosome": "14", "start_pos": 49697160, "end_pos": 49686392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102001.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102001.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078003.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078003.1" } ] } }, { "isoform_ac": "F1RL39-1", "url": "https://www.uniprot.org/uniprotkb/F1RL39/entry", "sequence": { "sequence": "MIRIAALNASSTVEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEARLLREAVSSGDEKEGLKHPGLMLKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLTRVPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDCRYSKGLVLKEKIFEEQPCLRKDSLRMFLKCDMSIHDVSVSAAESQAIVDEALGLRRRRQALTIREKEPDLKLVQPIPFLTWKCLGESLLATYNHLSTCEPPRPSLGKRIDLSDYQDPSQPLLSSVGVAPVSATQPSPASASPAATVAEPVLSYTPVATASFPLHSPSLLETGLPAGDVSGGDKSKKGVKRKKISEESGETAKRRSARVRNTKCKKEEKVDFQELLVKFLPSRLRKLDPEEEDDPFNNYEVPSEAKLESFPSVGPHRLSFDSATFMESERQDVHAFLLENLTNGGILELLVRYLKSMGHRFLLRWPPGLAEVVLSIYHSWRRHSASLPNPLLRDCSSQHIKDMMLMSLSCMELQLDQWLLTKGRSSAVSPRSCPAGVVNSRFGPDFPGTHFLGDLLQLSFASSQRDLFEDGWLEFVVRVYWLKARFLALQGDMEQALENYDICTEMLQRSSAICTQPGAQQRDIVIRLPNLHNDSVVSLEEIDKNLRSLERCQSLEETQRLYEAGDHKAVVRLLRPTLCPSGFDRAKHLEFMTSVPERPAQLLLLQDSLLRLEDHQQCFECSDVALNEAVQQMVNASDATAKEEWVATVTQLLLGIEQALSADSGGGILKDSSSTTGLTRLTNNLIQVIDCSMAVQEEPKEPHVSSVLPWIILHRIIRQEEDTFHSLCHQQQLQNPVDEVMAEPPMLPSSLMLLNTAHEYLGRRSWCCNSDGALLRFYVRVLQKELAASPSEDTHPYKEELETALEQCFYCLYSYPSKKSKARYLEEHSAQQVDLIWEDALFMFEYFKPKTLPEFDSYKTSTVSADLANLLKRIATIVPRTERPALSLDKVSAYIEGTSAEVPCLPEGADPSPPVVNELYYLLADYHFKNKEQSKAIKFYMHDICICPNRFDSWAGMALARASRIQDKLNSNELKSDGPIWKHATPVLNCFRRALEIDSSNLSLWIEFGTMSYALHSFASRQLKQWRPELPPELVQQMEDRRDSMLETARHCFTSAARCEGDGDEEEWLIHYMLGKVAEKQQQPPTVYLRHYRQAGHYLHEEAARYPKKIHYHNPPELAMEALEVYFRLHASILKLLGRPDSGVGAEVLVSFMKEAAEGPFARGEEKNAPKASEKEKACLVDEDSHSSAGTLPGPGASLPSSGPGLTSPPYTATPIDHDYVKCKKPHQQATPDERSQDSTAVALSDSSSTQDFFNEPSSSLEGSRKPLTEKRPPAPSSHAGPPGKDLQGPAEERGKPEEPLETMEGIRVTEQGSQKPAADPSGPGTPAKPPVSAAATWDGRRRGEPPGEPAAFPQGLPAGAEEQRQFLTEQCVASLRLCLSRFPQHYKSLYRLAFLYTYSKTHRNLQWARDVLLGSGIPWQQLQHMPAQGLFCERNKTNFFNGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRTPDQGKKYLRDADRQVLAQRAFILTVKVLEDTLSELAEGSERPGPKACGLSGARMTTDVSHKASPEDGQEGLPHPKKPPLADGSGPGTEPGGKAGPLTHRPVAMDAGEGTDQGGERKDRENPRAGPTEPMDTGEAAARCSDSERVPPLQPGRPLRDRGPESRPAELSLEELSISTRQQPGPPGPAPPATAPTATTPRPRVGSHPEEAPPRPSRKRKLLEDTESGKTLLLDAYRVWQQGQKGMAYDLGRIERIMAETYMLIKQVDEEAALEQAVKFCQVHLGAAAQRQAAGDTPTTPKHPKDSRENFFPAAVALTASEPMPTDVLQRPSDAHTKPRPVPATTSAVITCPPSASASTPDPAEDPGPPQLHRPEATSLDPEEELAGEGAEGTGFPPQEPPSSEQVKTAPEGPPAEPHCWPAEATSRTGTEPTCSQGSSCKVPSGGSAQPPEGHLGKTEPSRAKSRLLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALEVLETSSQESSLESETDEDDDYMDV", "length": 2184, "header": "tr|F1RL39-1|F1RL39_PIG Isoform 1 of Calcineurin-binding protein cabin-1 OS=Sus scrofa OX=9823 GN=CABIN1 PE=4 SV=4 CANONICAL=F1RL39-1" }, "locus": { "chromosome": "14", "start_pos": 49777245, "end_pos": 49686392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011023.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011023.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010735.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010735.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1464, "start_aa": "Thr", "end_pos": 1464, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1464", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1756, "start_aa": "Thr", "end_pos": 1756, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1756", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCK5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2559584", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559584", "resource": "Reactome", "description": "Formation of Senescence-Associated Heterochromatin Foci (SAHF)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39" } ], "pmid": "" }, { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1RL39", "url": "https://www.uniprot.org/uniprotkb/F1RL39" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1139, "end_pos": 1141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1574, "end_pos": 1576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1601, "end_pos": 1603, "annotation": "n_glycosylation_sequon" }, { "start_pos": 478, "end_pos": 480, "annotation": "n_glycosylation_sequon" }, { 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"count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "A0A8W4FRE2-1", "uniprot_ac": "A0A8W4FRE2", "uniprot_id": "A0A8W4FRE2_PIG", "mass": { "chemical_mass": 22069.0, "monoisotopic_mass": 22069.0 }, "refseq": {}, "gene_names": [ { "name": "PRRG2", "type": "recommended", "evidence": [ { "id": "A0A8W4FRE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRE2" } ] } ], "protein_names": [ { "name": "Proline rich and Gla domain 2", "type": "synonym", "evidence": [ { "id": "A0A8W4FRE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRE2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FRE2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRE2" } ], 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"F1RMW6-1", "url": "https://www.uniprot.org/uniprotkb/F1RMW6/entry", "sequence": { "sequence": "MGTCHNQHLLFLFILGAPTLISAQKLPCQRSTFMGLESDPMYTFNWTTDNVEICDNGALCQETVLIIRSGRTETAILATKGCSSEGTPAITFIQHSPPPGIVTISYNNYCDDPLCNNRENLYEIWPEAEYEEPATLHCPTCVALGNCLSAPSLPCPNDTNRCYQGKLQVTGGGINSPLEIKGCTAITGCRIMSGIFTIGPLWVKETCPFKSLTPRKVQSGAMWLPTSYWSLELPLLLLLPLLVH", "length": 244, "header": "tr|F1RMW6-1|F1RMW6_PIG Isoform 1 of Testis expressed 101 OS=Sus scrofa OX=9823 GN=TEX101 PE=1 SV=2 CANONICAL=F1RMW6-1" }, "locus": { "chromosome": "6", "start_pos": 50274024, "end_pos": 50271852, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003389.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003389.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003306.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003306.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 87, "start_aa": "Thr", "end_pos": 87, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr87", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ76", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-163125", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163125", "resource": "Reactome", "description": "Post-translational modification: synthesis of GPI-anchored proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "Q924B5-1", "protein_name": "Testis-expressed protein 101", "gene_name": "Tex101", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGACRIQYILLVFLLIASHWTLVQNIYCEVSRTLSLEDNPSGTFNWTSKAEKCNPGEFCQETVLLIKAEGTKTAILASKSCVPQGAETMTFVQYTAPPGLVAISYSNYCNDSLCNNRNNLASILQAPEPTATSNMSGARHCPTCLALEPCSSAPSMPCANGTTQCYHGKIELSGGGMDSVVHVKGCTTAIGCRLMAKMESVGPMTVKETCSYQSFLHPRMAEIGASWMPTSLWVLELLLPALSLPLIYFP", "length": 250 }, "evidence": [ { "id": "F1RMW6", "url": "https://omabrowser.org/oma/group/F1RMW6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BY14-1", "protein_name": "Testis-expressed protein 101", "gene_name": "TEX101", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANMFNWTTEEVETCDKGALCQETILIIKAGTETAILATKGCIPEGEEAITIVQHSSPPGLIVTSYSNYCEDSFCNDKDSLSQFWEFSETTASTVSTTLHCPTCVALGTCFSAPSLPCPNGTTRCYQGKLEITGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTENGATCLPIPVWGLQLLLPLLLPSFIHFS", "length": 249 }, "evidence": [ { "id": "F1RMW6", "url": "https://omabrowser.org/oma/group/F1RMW6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JMI7-1", "protein_name": "Testis-expressed protein 101", "gene_name": "Tex101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGACRIQYVLLIFLLIASRWTLVQNTYCQVSQTLSLEDDPGRTFNWTSKAEQCNPGELCQETVLLIKADGTRTVVLASKSCVSQGGEAVTFIQYTAPPGLVAISYSNYCNDSLCNNKDSLASVWRVPETTATSNMSGTRHCPTCVALGSCSSAPSMPCANGTTQCYQGRLEFSGGGMDATVQVKGCTTTIGCRLMAMIDSVGPMTVKETCSYQSFLQPRKAEIGASQMPTSLWVLELLFPLLLLPLTHFP", "length": 250 }, "evidence": [ { "id": "F1RMW6", "url": "https://omabrowser.org/oma/group/F1RMW6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "binding of sperm to zona pellucida", "id": "GO:0007339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007339", "evidence": [ { "database": "UniProtKB", "id": "F1RMW6", "url": "https://www.uniprot.org/uniprotkb/F1RMW6" } ], "pmid": "" }, { "name": "regulation of flagellated sperm motility", "id": "GO:1901317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901317", "evidence": [ { "database": "UniProtKB", "id": "F1RMW6", "url": "https://www.uniprot.org/uniprotkb/F1RMW6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane raft", "id": "GO:0044853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044853", "evidence": [ { "database": "UniProtKB", "id": "F1RMW6", "url": "https://www.uniprot.org/uniprotkb/F1RMW6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RMW6", "url": "https://www.uniprot.org/uniprotkb/F1RMW6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMW6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 244, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMW6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMW6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RMW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMW6" }, { "id": "PF00021", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UPAR/Ly6", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 117, "start_aa": "Asp", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 87 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "F1RIL6-1", "uniprot_ac": "F1RIL6", "uniprot_id": "F1RIL6_PIG", "mass": { "chemical_mass": 91852.0, "monoisotopic_mass": 91852.0 }, "refseq": { "ac": "XP_003127578", "name": "espin isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127578" }, "gene_names": [ { "name": "ESPN", "type": "recommended", "evidence": [ { "id": "F1RIL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ] }, { "name": "ESPN", "type": "synonym", "evidence": [ { "id": "XP_003127578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127578" } ] } ], "protein_names": [ { "name": "Espin", "type": "recommended", "evidence": [ { "id": "F1RIL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIL6/entry#names_and_taxonomy" } ] }, { "name": "Ectoplasmic specialization protein", "type": "synonym", "evidence": [ { "id": "F1RIL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIL6/entry#names_and_taxonomy" } ] }, { "name": "espin isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003127578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127578" } ] } ], "function": [ { "annotation": "Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimension, dynamics and signaling capacities of the actin filament-rich microvilli in the mechanosensory and chemosensory cells. Required for the assembly and stabilization of the stereociliary parallel actin bundles. Plays a crucial role in the formation and maintenance of inner ear hair cell stereocilia. Involved in the elongation of actin in stereocilia. In extrastriolar hair cells, required for targeting MYO3B to stereocilia tips, and for regulation of stereocilia diameter and staircase formation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXY9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY9#function" }, { "database": "UniProtKB", "id": "ARBA00057682", "url": "https://www.uniprot.org/uniprotkb/ARBA00057682#function" }, { "database": "UniProtKB", "id": "I3LT50", "url": "https://www.uniprot.org/uniprotkb/I3LT50#function" }, { "database": "UniProtKB", "id": "A0A287BQ42", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ42#function" }, { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6#function" }, { "database": "UniProtKB", "id": "A0A5G2QTE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ESPN", "url": "https://www.uniprot.org/uniprotkb/F1RIL6", "locus": { "chromosome": "6", "start_pos": 67316591, "end_pos": 67284079, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003374", "url": "https://www.ensembl.org/id/ENSSSCG00000003374" } ] } } ], "crossref": [ { "id": "F1RIL6", "url": "https://alphafold.ebi.ac.uk/entry/F1RIL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003374", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003374", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515838", "url": "https://www.ncbi.nlm.nih.gov/gene/100515838", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052420", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052420", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515838", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515838", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR24153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24153:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24153:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127578", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BQ42", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ42-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXY9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIL6-1", "url": "https://www.uniprot.org/uniprotkb/F1RIL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LT50", "url": "https://www.uniprot.org/uniprotkb/I3LT50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LT50-1", "url": "https://www.uniprot.org/uniprotkb/I3LT50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALEQALQAARQGDLDVLRSLHAARLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDAAATGHLACLQWLLSQGGCGVQDKDNSGATVLHLAARFGHPEVVNWLLRNGGGDPTAATDTGALPVHYAAAKGDFPSLRLLLRHHPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADLETKQPDSGMSSPNTTVSVQPPNFDLSSPTSTLSNYDSCSSSHSSIKGRRPLRGLSSAGAADIQSYMDMLSPEPSLPQGKVERPRAPPPPPSFPPPPPPPDTQLPPPPPGYPAPKPPVGLQAADIYLQTKNKLRHVETEAFKKELSSRDGRNGLRRQDSSRKPRAFSKQPSTGDYYRQLGRPPGEPLAARPGMAHSEEVRARPPASAGRLEPGRAARFSLAGPSAPPQAALLPGNHVHNGCGADPKASRELPPPPPPPPPPLPEALSSPPPAPPLPFEGAGPGCGQRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQPDSPLPPASPAPSRARSPTPPPATGSQPLLNGSVAPAPPATPAPGVQLDVEALIPTHDEQGRPIPEWKRQVMVRKLQLKMQEEEEQKRKEEEEEAWLASMPAWRRDILRKKLEEEREQKRKEEERQKQEEMQREKEQSEKLRTLGYDESKLAPWQRQIILKKGDIAKY", "length": 855, "header": "tr|F1RIL6-1|F1RIL6_PIG Isoform 1 of Espin OS=Sus scrofa OX=9823 GN=ESPN PE=1 SV=4 CANONICAL=F1RIL6-1" }, "isoforms": [ { "isoform_ac": "A0A287BQ42-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ42/entry", "sequence": { "sequence": "MALEQALQAARQGDLDVLRSLHAARLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDAAATGHLACLQWLLSQGGCGVQDKDNSGATVLHLAARFGHPEVVNWLLRNGGGDPTAATDTGALPVHYAAAKGDFPSLRLLLRHHPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADLETKQPDSGMSSPNTTVSVQPPNFDLSSPTSTLSNYDSCSSSHSSIKGRRPLRGDLPQGKVERPRAPPPPPSFPPPPPPPDTQLPPPPPGYPAPKPPVGLQAADIYLQTKNKLRHVETEAFKKEVGRGDLASGLRGRRGGSSRDGRNGLRRQDSSRKPRAFSKQPSTGDYYRQLGRPPGEPLAARPGMAHSEEAALLPGNHVHNGCGADPKASRELPPPPPPPPPPLPEALSSPPPAPPLPFEGAGPGCGQRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQPDSPLPPASPAPSRARSPTPPPATGSQPLLNGSVAPAPPATPAPGVQLDVEALIPTHDEQGRPIPEWKRQVMVRKLQLKMQEEEEQKRKEEEEEAWLASMPAWRRDILRKKLEEERKEEERQKQEEMQREKEQSEKLRTLGYDESKLAPWQRQIILKKGDIAKY", "length": 816, "header": "tr|A0A287BQ42-1|A0A287BQ42_PIG Computationally mapped isoform of Espin OS=Sus scrofa OX=9823 GN=ESPN PE=1 SV=1 CANONICAL=F1RIL6-1" }, "locus": { "chromosome": "6", "start_pos": 67315780, "end_pos": 67284278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053989.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053989.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058294.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058294.1" } ] } }, { "isoform_ac": "A0A5G2QTE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE1/entry", "sequence": { "sequence": "MALEQALQAARQGDLDVLRSLHAARLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDAAATGHLACLQWLLSQGGCGVQDKDNSGATVLHLAARFGHPEVVNWLLRNGGGDPTAATDTGALPVHYAAAKGDFPSLRLLLRHHPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADLETKQPDSGMSSPNTTVSVQPPNFDLSSPTSTLSNYDSCSSSHSSIKGRRPLRGLSSAGAADIQSYMDMLSPEPSLPQGKVERPRAPPPPPSFPPPPPPPDTQLPPPPPGYPAPKPPVGLQAADIYLQTKNKLRHVETEAFKKELSSRDGRNGLRRQDSSRKPRAFSKQPSTGDYYRQLGRPPGEPLAARPGMAHSEEAALLPGNHVHNGCGADPKASRELPPPPPPPPPPLPEALSSPPPAPPLPFEGAGPGCGQRRSSSSTGKVRVLRHRKSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQPDSPLPPASPAPSRARSPTPPPATGSQPLLNGSVAPAPPATPAPGVQLDVEALIPTHDEQGRPIPEWKRQVMVRKLQLKMQEEEEQKRKEEEEEAWLASMPAWRRDILRKKLEEEREQKRKEEERQKQEEMQREKEQSEKLRTLGYDESKLAPWQRQIILKKGDIAKY", "length": 834, "header": "tr|A0A5G2QTE1-1|F1RIL6_PIG Computationally mapped isoform of Espin OS=Sus scrofa OX=9823 GN=ESPN PE=1 SV=1 CANONICAL=F1RIL6-1" }, "locus": { "chromosome": "6", "start_pos": 67315780, "end_pos": 67284278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080733.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080733.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067416.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067416.1" } ] } }, { "isoform_ac": "A0A5G2QXY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXY9/entry", "sequence": { "sequence": "MALEQALQAARQGDLDVLRSLHAARLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDAAATGHLACLQWLLSQGGCGVQDKDNSGATVLHLAARFGHPEVVNWLLRNGGGDPTAATDTGALPVHYAAAKGDFPSLRLLLRHHPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADLETKQPDSGMSSPNTTVSVQPPNFDLSSPTSTLSNYDSCSSSHSSIKGRRPLRGLSSAGAADIQSYMDMLSPEPSLPQGKVERPRAPPPPPSFPPPPPPPDTQLPPPPPGYPAPKPPVGLQAADIYLQTKNKLRHVETEAFKKELSSRDGRNGLRRQDSSRKPRAFSKQPSTGDYYRQLGRPPGEPLAARPGMAHSEEVRARPPASAGRLEPGRAARFSLAGPSAPPQAALLPGNHVHNGCGADPKASRELPPPPPPPPPPLPEALSSPPPAPPLPFEGAGPGCGQRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQPDSPLPPASPAPSRARSPTPPPATGSQPLLNGSVAPAPPATPAPGVQLDVEALIPTHDEQGRPIPEWKRQVMVRKLQLKMQEEEEQKRKLTAASSCCYPREGWRYSREYNAILGPFGELMTEADILRIEQQIENLQVLHKAQKLEARLEQLELELEQLLPISAALSAPRFTVDPRRMHGRAASLPAWCSKISTLLKSMATLLATLGGRPAHLAELLAADTGQPLPPLSDAPWRPGPLCLGRSHSLSWCREAVAREILECGVSVQHLRATYERRAQGPAAPGGPRRKLSLPAGAPGREPILEEDYVAAGPGKPSSAAAAANGLLPAEEPLDVLGLPEAPSLQAALPEPEQLARRPPSSTELRGVQDYIDMRKERIVYLFLEHWRKWTFRGPGRHAQVRLRRLLPRVVAAGAGLSPQAAAAAPRPPTGDGRDRRLLHLLKQRQVVGKLLGHWRSLLRRVPARQPRGPGLAHGLYWPEHFLPPLDGRAPPTYDSLTLDLFMLGYFQLLEMGLSREERKFRHLLCYEMFDRLGSHPWELIRLFHRVVLEEVETGRRRWSDGFEDLRRQFFGDTPEAEPAREEEAEMPLGEGTEKGEREPIEETTPAQMGDRPEAPTPAPQLPPPPAAPPPTSAPPSSGAPAEDPLELVSEMGEFSNEDICRYIDRSFSFWKEKEAELFDI", "length": 1363, "header": "tr|A0A5G2QXY9-1|A0A5G2QXY9_PIG Computationally mapped isoform of Espin OS=Sus scrofa OX=9823 GN=ESPN PE=1 SV=1 CANONICAL=F1RIL6-1" }, "locus": { "chromosome": "6", "start_pos": 67312480, "end_pos": 67284278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080539.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080539.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066814.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066814.1" } ] } }, { "isoform_ac": "F1RIL6-1", "url": "https://www.uniprot.org/uniprotkb/F1RIL6/entry", "sequence": { "sequence": "MALEQALQAARQGDLDVLRSLHAARLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDAAATGHLACLQWLLSQGGCGVQDKDNSGATVLHLAARFGHPEVVNWLLRNGGGDPTAATDTGALPVHYAAAKGDFPSLRLLLRHHPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADLETKQPDSGMSSPNTTVSVQPPNFDLSSPTSTLSNYDSCSSSHSSIKGRRPLRGLSSAGAADIQSYMDMLSPEPSLPQGKVERPRAPPPPPSFPPPPPPPDTQLPPPPPGYPAPKPPVGLQAADIYLQTKNKLRHVETEAFKKELSSRDGRNGLRRQDSSRKPRAFSKQPSTGDYYRQLGRPPGEPLAARPGMAHSEEVRARPPASAGRLEPGRAARFSLAGPSAPPQAALLPGNHVHNGCGADPKASRELPPPPPPPPPPLPEALSSPPPAPPLPFEGAGPGCGQRRSSSSTGSTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQPDSPLPPASPAPSRARSPTPPPATGSQPLLNGSVAPAPPATPAPGVQLDVEALIPTHDEQGRPIPEWKRQVMVRKLQLKMQEEEEQKRKEEEEEAWLASMPAWRRDILRKKLEEEREQKRKEEERQKQEEMQREKEQSEKLRTLGYDESKLAPWQRQIILKKGDIAKY", "length": 855, "header": "tr|F1RIL6-1|F1RIL6_PIG Isoform 1 of Espin OS=Sus scrofa OX=9823 GN=ESPN PE=1 SV=4 CANONICAL=F1RIL6-1" }, "locus": { "chromosome": "6", "start_pos": 67315780, "end_pos": 67284278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003744.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003744.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003658.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003658.4" } ] } }, { "isoform_ac": "I3LT50-1", "url": "https://www.uniprot.org/uniprotkb/I3LT50/entry", "sequence": { "sequence": "MALEQALQAARQGDLDVLRSLHAARLLGPSLRDPLDALPVHHAARAGKLHCLRFLVEEAALPAAARARNGATPAHDAAATGHLACLQWLLSQGGCGVQDKDNSGATVLHLAARFGHPEVVNWLLRNGGGDPTAATDTGALPVHYAAAKGDFPSLRLLLRHHPEGVNAQTKNGATPLYLACQEGHLEVTQYLVQECGADPHLSAHDGMTPLHAAAQMGHSPVIVWLVSCTDVSLSEQDKDGATAMHFAASRGHAKVLSWLLLHGGEISADLWGGTPLHDAAENGELECCQILVVNGAELDVRDRDGYTAADLSDYNGHSHCTRYLRTVENLSVEHRVLSRDPSADLETKQPDSGMSSPNTTVSVQPPNFDLSSPTSTLSNYDSCSSSHSSIKGRRPLRGLSSAGAADIQSYMDMLSPEPSLPQGKVERPRAPPPPPSFPPPPPPPDTQLPPPPPGYPAPKPPVGLQAADIYLQTKNKLRHVETEAFKKEVANPHLPGPGQAGARQDTGASSGLSSRDGRNGLRRQDSSRKPRAFSKQPSTGDYYRQLGRPPGEPLAARPGMAHSEEAALLPGNHVHNGCGADPKASRELPPPPPPPPPPLPEALSSPPPAPPLPFEGAGPGCGQRRSSSSTGSDQRLLSCLRAGTKSFNMMSPTGDNSELLAEIKAGKSLKPTPQSKGLTTVFSGSGQPASQPDSPLPPASPAPSRARSPTPPPATGSQPLLNGSVAPAPPATPAPGVQLDVEALIPTHDEQGRPIPEWKRQVMVRKLQLKMQEEEEQKRKEEEEEAWLASMPAWRRDILRKKLEEERKEEERQKQEEMQREKEQSEKLRTLGYDESKLAPWQRQIILKKGDIAKY", "length": 855, "header": "tr|I3LT50-1|F1RIL6_PIG Computationally mapped isoform of Espin OS=Sus scrofa OX=9823 GN=ESPN PE=1 SV=3 CANONICAL=F1RIL6-1" }, "locus": { "chromosome": "6", "start_pos": 67315780, "end_pos": 67284278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032296.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032296.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027294.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027294.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 132, "start_aa": "Thr", "end_pos": 132, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr132", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 706, "start_aa": "Thr", "end_pos": 706, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr706", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 728, "start_aa": "Thr", "end_pos": 728, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr728", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTE1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515838", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515838", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" }, { "name": "microvillus", "id": "GO:0005902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005902", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" }, { "name": "stereocilium", "id": "GO:0032420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032420", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" }, { "name": "actin filament bundle assembly", "id": "GO:0051017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051017", "evidence": [ { "database": "UniProtKB", "id": "F1RIL6", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 718, "end_pos": 720, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIL6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 855, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RIL6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RIL6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RIL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIL6" }, { "id": "PS51082", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WH2", "eco_id": "ECO_0000259", "start_pos": 651, "end_pos": 668, "start_aa": "Asp", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 72, 132, 706, 728 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 329, "end_pos": 331 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 718, "end_pos": 720 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RIK4-1", "uniprot_ac": "F1RIK4", "uniprot_id": "F1RIK4_PIG", "mass": { "chemical_mass": 103524.0, "monoisotopic_mass": 103524.0 }, "refseq": {}, "gene_names": [ { "name": "PLEKHG5", "type": "recommended", "evidence": [ { "id": "F1RIK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ] } ], "protein_names": [ { "name": "Pleckstrin homology and RhoGEF domain containing G5", "type": "synonym", "evidence": [ { "id": "F1RIK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RIK4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEKHG5", "url": "https://www.uniprot.org/uniprotkb/F1RIK4", "locus": { "chromosome": "6", "start_pos": 67321534, "end_pos": 67362838, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003376", "url": "https://www.ensembl.org/id/ENSSSCG00000003376" } ] } } ], "crossref": [ { "id": "F1RIK4", "url": "https://alphafold.ebi.ac.uk/entry/F1RIK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003376", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003376", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13244", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13244", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17068", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17068", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13217", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13217", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13217:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13217:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696264", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A288CG10", "url": "https://www.uniprot.org/uniprotkb/A0A288CG10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CG10-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CG10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4N6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHE6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNT6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RIK4-1", "url": "https://www.uniprot.org/uniprotkb/F1RIK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAMDLEEEEESCMDAKGDRRSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIEPEIVPAMKKKSLGEVLLPVFERKGIAPGKVDIFLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGVKDSKSLSLPILRPTGAGPPTQERVDPQIRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHAYGLFGLPRLPRRLRFDQDSWEEEGDEEEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEVERLFSNIPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAIVTMIGSVERFIHHVNTCMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLREFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVIRPPLLVDRIVCRELRDPGSFLLIYLNEFHCAVGAYTFQASGQALCRGWVDAIYNAQNQLQQLRMQEQPGGQQHLQSLEEEEDEQEEEEEEEEEEGGDSSTSAASSPTILRKSSNSLNSQHCASDGSTETLAMVVVEPGEMLSSPEFEGGPFSSQSDETSLSTTASSVTPTCELLPLCPADGRSCSMDSAYGTLSPTSLQDFVAPAPVAEPAPRPPESPQAPSPPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPAQEADVGPALPDQDHSAAQ", "length": 931, "header": "tr|F1RIK4-1|F1RIK4_PIG Isoform 1 of Pleckstrin homology and RhoGEF domain containing G5 OS=Sus scrofa OX=9823 GN=PLEKHG5 PE=4 SV=4 CANONICAL=F1RIK4-1" }, "isoforms": [ { "isoform_ac": "A0A288CG10-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CG10/entry", "sequence": { "sequence": "MDKGRAAKVCHHADCQQLHRRGPLNLCEACDSKVHNAMHYDGHVRFDLPPQGTTYWLCWGSVLARNVSTRSCPPRTSPAMDLEEEEESCMDAKGDRRSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIEPEIVPAMKKKSLGEVLLPVFERKGIAPGKVDIFLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGVKDSKSLSLPILRPTGAGPPTQERVDPQIRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHAYGLFGLPRLPRRLRFDQDSWEEEGDEEEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEVERLFSNIPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAIVTMIGSVERFIHHVNTCMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLREFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVIRPPLLVDRIVCRELRDPGSFLLIYLNEFHCAVGAYTFQASGQALCRGWVDAIYNAQNQLQQLRMQEQPGGQQHLQSLEEEEDEQEEEEEEEEEEGGDSSTSAASSPTILRKSSNSLNSQHCASDGSTETLAMVVVEPGEMLSSPEFEGGPFSSQSDETSLSTTASSVTPTCELLPLCPADGRSCSMDSAYGTLSPTSLQDFVAPAPVAEPAPRPPESPQAPSPPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGARPRGSPQEAGPSWDCRGTPGPGSGPGLASCPGGEPEGPPRRSRELPLEALPQVQPEPPPGISAQHRKLTLAQLYRIRTTLLLNSTLTASEV", "length": 1050, "header": "tr|A0A288CG10-1|A0A288CG10_PIG Computationally mapped isoform of Pleckstrin homology and RhoGEF domain containing G5 OS=Sus scrofa OX=9823 GN=PLEKHG5 PE=4 SV=1 CANONICAL=F1RIK4-1" }, "locus": { "chromosome": "6", "start_pos": 67352020, "end_pos": 67322538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003745.6", "url": "https://www.ensembl.org/id/ENSSSCT00000003745.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003659.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003659.5" } ] } }, { "isoform_ac": "A0A5G2R4N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4N6/entry", "sequence": { "sequence": "MGLGGGRRSAVKTKGIVTRRFPSPAPSIQGAPLGEGGEGPAEPGSLRRGWGLGVRAGLRAGGCSRPGSPAPPTPGPGALGGRARPHNGRKRGSALCPAGGRRRPALPPAAMGTGPGVSGRRAASRPSPGLPSRDSEPGGGGGRGRDGEDQVCHHADCQQLHRRGPLNLCEACDSKVHNAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAMDLEEEEESCMDAKGDRRSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIEPEIVPAMKKKSLGEVLLPVFERKGIAPGKVDIFLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGVKDSKSLSLPILRPTGAGPPTQERVDPQIRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHAYGLFGLPRLPRRLRFDQDSWEEEGDEEEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEVERLFSNIPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAIVTMIGSVERFIHHVNTCMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLREFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVIRPPLLVDRIVCRELRDPGSFLLIYLNEFHCAVGAYTFQASGQALCRGWVDAIYNAQNQLQQLRMQEQPGGQQHLQSLEEEEDEQEEEEEEEEEEGGDSSTSAASSPTILRKSSNSLNSQHCASDGSTETLAMVVVEPGEMLSSPEFEGGPFSSQSDETSLSTTASSVTPTCELLPLCPADGRSCSMDSAYGTLSPTSLQDFVAPAPVAEPAPRPPESPQAPSPPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGARPRGSPQEAGPSWDCRGTPGPGSGPGLASCPGGEPEGPPRRSRELPLEALPQVQPEPPPGISAQHRKLTLAQLYRIRTTLLLNSTLTASEV", "length": 1184, "header": "tr|A0A5G2R4N6-1|A0A5G2R4N6_PIG Computationally mapped isoform of Pleckstrin homology and RhoGEF domain containing G5 OS=Sus scrofa OX=9823 GN=PLEKHG5 PE=4 SV=2 CANONICAL=F1RIK4-1" }, "locus": { "chromosome": "6", "start_pos": 67342163, "end_pos": 67322538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074889.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074889.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065528.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065528.2" } ] } }, { "isoform_ac": "A0A8W4FHE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHE6/entry", "sequence": { "sequence": "MHPAGARPQPPSRSPRAGPRRPPLRSWPRQPGASSMEDRSLAEEKGLHCQNPDCMDKGRAAKVCHHADCQQLHRRGPLNLCEACDSKVHNAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAMDLEEEEESCMDAKGDRRSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIEPEIVPAMKKKSLGEVLLPVFERKGIAPGKVDIFLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGVKDSKSLSLPILRPTGAGPPTQERVDPQIRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHAYGLFGLPRLPRRLRFDQDSWEEEGDEEEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEVERLFSNIPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAIVTMIGSVERFIHHVNTCMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLREFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVIRPPLLVDRIVCRELRDPGSFLLIYLNEFHCAVGAYTFQASGQALCRGWVDAIYNAQNQLQQLRMQEQPGGQQHLQSLEEEEDEQEEEEEEEEEEGGDSSTSAASSPTILRKSSNSLNSQHWKLTLAQLYRIRTTLLLNSTLTASEV", "length": 866, "header": "tr|A0A8W4FHE6-1|F1RIK4_PIG Computationally mapped isoform of Pleckstrin homology and RhoGEF domain containing G5 OS=Sus scrofa OX=9823 GN=PLEKHG5 PE=4 SV=1 CANONICAL=F1RIK4-1" }, "locus": { "chromosome": "6", "start_pos": 67353090, "end_pos": 67322538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099431.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099431.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078857.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078857.1" } ] } }, { "isoform_ac": "A0A8W4FNT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNT6/entry", "sequence": { "sequence": "MFFYWKKRGAYELEALPSGLAELELGAVERFSWSSTLDIIEDLEDRSLAEEKGLHCQNPDCMDKGRAAKVCHHADCQQLHRRGPLNLCEACDSKVHNAMHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAMDLEEEEESCMDAKGDRRSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIEPEIVPAMKKKSLGEVLLPVFERKGIAPGKVDIFLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGVKDSKSLSLPILRPTGAGPPTQERVDPQIRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHAYGLFGLPRLPRRLRFDQDSWEEEGDEEEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEVERLFSNIPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAIVTMIGSVERFIHHVNTCMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLREFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVIRPPLLVDRIVCRELRDPGSFLLIYLNEFHCAVGAYTFQASGQALCRGWVDAIYNAQNQLQQLRMQEQPGGQQHLQSLEEEEDEQEEEEEEEEEEGGDSSTSAASSPTILRKSSNSLNSQHCASDGSTETLAMVVVEPGEMLSSPEFEGGPFSSQSDETSLSTTASSVTPTCELLPLCPADGRSCSMDSAYGTLSPTSLQDFVAPAPVAEPAPRPPESPQAPSPPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPGARPRGSPQEAGPSWDCRGTPGPGSGPGLASCPGGEPEGPPRRSRELPLEALPQVQPEPPPGISAQHRKLTLAQLYRIRTTLLLNSTLTASEV", "length": 1103, "header": "tr|A0A8W4FNT6-1|F1RIK4_PIG Computationally mapped isoform of Pleckstrin homology and RhoGEF domain containing G5 OS=Sus scrofa OX=9823 GN=PLEKHG5 PE=4 SV=1 CANONICAL=F1RIK4-1" }, "locus": { "chromosome": "6", "start_pos": 67362838, "end_pos": 67322538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102864.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102864.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081157.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081157.1" } ] } }, { "isoform_ac": "F1RIK4-1", "url": "https://www.uniprot.org/uniprotkb/F1RIK4/entry", "sequence": { "sequence": "MHYDGHVRFDLPPQGSVLARNVSTRSCPPRTSPAMDLEEEEESCMDAKGDRRSTGLKLSKKKARRRHTDDPSKECFTLKFDLNVDIEPEIVPAMKKKSLGEVLLPVFERKGIAPGKVDIFLDQSNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGVKDSKSLSLPILRPTGAGPPTQERVDPQIRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGGSSSSGGSDSWKNRAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHAYGLFGLPRLPRRLRFDQDSWEEEGDEEEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIKKLRVITNLFLCCLLNLQESGLLCEVEVERLFSNIPEIARLHRGLWGSVMAPVLEKARRTRALLQPGDFLKGFKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYVTWAEKHQQCQRLKLSDMLAKPHQRLTKYPLLLKSVLRKTDEPRAKEAIVTMIGSVERFIHHVNTCMRQRQERQRLAAVVSRIDAYEVVEGSNDEVDKLLREFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVYCFLFTDLLLVTKAVKKAERTKVIRPPLLVDRIVCRELRDPGSFLLIYLNEFHCAVGAYTFQASGQALCRGWVDAIYNAQNQLQQLRMQEQPGGQQHLQSLEEEEDEQEEEEEEEEEEGGDSSTSAASSPTILRKSSNSLNSQHCASDGSTETLAMVVVEPGEMLSSPEFEGGPFSSQSDETSLSTTASSVTPTCELLPLCPADGRSCSMDSAYGTLSPTSLQDFVAPAPVAEPAPRPPESPQAPSPPPSPRLRRRTPVQLLPCLPHLLKSKSEASLLQLLSGATTRGAPPAPSRSLSELCLAATVPAQEADVGPALPDQDHSAAQ", "length": 931, "header": "tr|F1RIK4-1|F1RIK4_PIG Isoform 1 of Pleckstrin homology and RhoGEF domain containing G5 OS=Sus scrofa OX=9823 GN=PLEKHG5 PE=4 SV=4 CANONICAL=F1RIK4-1" }, "locus": { "chromosome": "6", "start_pos": 67332738, "end_pos": 67322832, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003746.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003746.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003660.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003660.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 221, "start_aa": "Thr", "end_pos": 221, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr221", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 466, "start_aa": "Thr", "end_pos": 466, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr466", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHE6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9696264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "resource": "Reactome", "description": "RND3 GTPase cycle" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "angiogenesis", "id": "GO:0001525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001525", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" }, { "name": "endothelial cell migration", "id": "GO:0043542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043542", "evidence": [ { "database": "UniProtKB", "id": "F1RIK4", "url": "https://www.uniprot.org/uniprotkb/F1RIK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RIK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 931, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RMM0-1", "uniprot_ac": "F1RMM0", "uniprot_id": "F1RMM0_PIG", "mass": { "chemical_mass": 27352.0, "monoisotopic_mass": 27352.0 }, "refseq": { "ac": "XP_003357187", "name": "protein kinase C delta-binding protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357187" }, "gene_names": [ { "name": "CAVIN3", "type": "recommended", "evidence": [ { "id": "F1RMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ] }, { "name": "CAVIN3", "type": "synonym", "evidence": [ { "id": "XP_003357187", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357187" } ] } ], "protein_names": [ { "name": "Caveolae associated protein 3", "type": "synonym", "evidence": [ { "id": "F1RMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RMM0/entry#names_and_taxonomy" } ] }, { "name": "protein kinase C delta-binding protein", "type": "synonym", "evidence": [ { "id": "XP_003357187", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357187" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAVIN3", "url": "https://www.uniprot.org/uniprotkb/F1RMM0", "locus": { "chromosome": "9", "start_pos": 3379847, "end_pos": 3378207, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014633", "url": "https://www.ensembl.org/id/ENSSSCG00000014633" } ] } } ], "crossref": [ { "id": "F1RMM0", "url": "https://alphafold.ebi.ac.uk/entry/F1RMM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014633", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014633", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513556", "url": "https://www.ncbi.nlm.nih.gov/gene/100513556", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513556", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513556", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DLKCFAV", "url": "https://omabrowser.org/oma/group/DLKCFAV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RMM0", "url": "https://www.orthodb.org/?gene=F1RMM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15240", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15240", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15240:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15240:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15237", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15237", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003357187", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357187", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QWV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RMM0-1", "url": "https://www.uniprot.org/uniprotkb/F1RMM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGESALEPGPVPGAPAGGPVHAVTVVTLLEKLASMLEALRERQGGLAQRQGGLAGSVRRIQSGLGALSRSHDTTSNTLAQLLAKAERVGSHADAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEEAEIPASAFQKAPEPLGPGDQAEPGPEQLEAEVGESSDEEPVESRARRLRRTGLQKVQSLRRALSGRKGPAAPTATPVKPPRLGPGRSAEGQPQAEPALESKLEPEPPQDPEEAPGRPEAAEAAAVLQIESAA", "length": 262, "header": "tr|F1RMM0-1|F1RMM0_PIG Isoform 1 of Caveolae associated protein 3 OS=Sus scrofa OX=9823 GN=CAVIN3 PE=1 SV=2 CANONICAL=F1RMM0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QWV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWV6/entry", "sequence": { "sequence": "MGESALEPGPVPGAPAGGPVHAVTVVTLLEKLASMLEALRERQGGLAQRQGGLAGSVRRIQSGLGALSRSHDTTSNTLAQLLAKAERVGSHADAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKVPQTWAVRPPSLGSLLSHARLVFPIRAAEEEAEIPASAFQKAPEPLGPGDQAEPGPEQLEAEVGESSDEEPVESRARRLRRTGLQKVQSLRRALSGRKGPAAPTATPVKPPRLGPGRSAEGQPQAEPALESKLEPEPPQDPEEAPGRPEAAEAAAVLQIESAA", "length": 291, "header": "tr|A0A5G2QWV6-1|A0A5G2QWV6_PIG Computationally mapped isoform of Caveolae associated protein 3 OS=Sus scrofa OX=9823 GN=CAVIN3 PE=1 SV=2 CANONICAL=F1RMM0-1" }, "locus": { "chromosome": "9", "start_pos": 3379621, "end_pos": 3378277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078906.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078906.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069429.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069429.2" } ] } }, { "isoform_ac": "F1RMM0-1", "url": "https://www.uniprot.org/uniprotkb/F1RMM0/entry", "sequence": { "sequence": "MGESALEPGPVPGAPAGGPVHAVTVVTLLEKLASMLEALRERQGGLAQRQGGLAGSVRRIQSGLGALSRSHDTTSNTLAQLLAKAERVGSHADAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEEAEIPASAFQKAPEPLGPGDQAEPGPEQLEAEVGESSDEEPVESRARRLRRTGLQKVQSLRRALSGRKGPAAPTATPVKPPRLGPGRSAEGQPQAEPALESKLEPEPPQDPEEAPGRPEAAEAAAVLQIESAA", "length": 262, "header": "tr|F1RMM0-1|F1RMM0_PIG Isoform 1 of Caveolae associated protein 3 OS=Sus scrofa OX=9823 GN=CAVIN3 PE=1 SV=2 CANONICAL=F1RMM0-1" }, "locus": { "chromosome": "9", "start_pos": 3379621, "end_pos": 3378277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015984.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015984.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015563.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015563.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513556", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513556", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4FV37-1", "protein_name": "Caveolae-associated protein 3", "gene_name": "CAVIN3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGESALESGPVPGAPAGGPVHAVTVVTLLEKLATMLETLRERQGGLAQRQGGLAGSVRRIQSNLGALSRSHDTTSNTLAQLLAKAERVGSHADAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEEAEIPAKAFQKAPEPLGPVELGPQLPEAEAEESSDEEEPVESRARRLRRTGLEKVQSLRRALSGRKGHAAPTPTPVKPPRLGPGRSAEGQWEAQPALESKLEPEPPQDTEEDPGRPGAAEAAAVLQVESAA", "length": 260 }, "evidence": [ { "id": "F1RMM0", "url": "https://omabrowser.org/oma/group/F1RMM0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q91VJ2-1", "protein_name": "Caveolae-associated protein 3", "gene_name": "Cavin3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGESALEPGPVPETPAGGPVHAVTVVTLLEKLATMLEALRERQGGLAERQGGLAGSVRRIQSGLGALSRSHDTTSNTLTQLLAKAERVGSHADAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEETEIPARAFQKVPELLGPEDQLVLGPDQPEDEVGESSEEEPVESRAQRLRRTGLQKVQSLKRALSSRKAAQPTPVKPPRVGPVRSSEGPSEGQPAAQPEMESELETALEPEPPQPTKEDPEKPVLQIESAA", "length": 260 }, "evidence": [ { "id": "F1RMM0", "url": "https://omabrowser.org/oma/group/F1RMM0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969G5-1", "protein_name": "Caveolae-associated protein 3", "gene_name": "CAVIN3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRESALERGPVPEAPAGGPVHAVTVVTLLEKLASMLETLRERQGGLARRQGGLAGSVRRIQSGLGALSRSHDTTSNTLAQLLAKAERVSSHANAAQERAVRRAAQVQRLEANHGLLVARGKLHVLLFKEEGEVPASAFQKAPEPLGPADQSELGPEQLEAEVGESSDEEPVESRAQRLRRTGLQKVQSLRRALSGRKGPAAPPPTPVKPPRLGPGRSAEAQPEAQPALEPTLEPEPPQDTEEDPGRPGAAEEALLQMESVA", "length": 261 }, "evidence": [ { "id": "F1RMM0", "url": "https://omabrowser.org/oma/group/F1RMM0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1H9-1", "protein_name": "Caveolae-associated protein 3", "gene_name": "Cavin3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGESALEPGPVPGAPAGGPVHAVTVVTLLEKLATMLEALRERQGGLAERQGGLAGSVRRIQSGLGALSRSHDTTSNTLAQLLAKAERVGSHADAAQERAVHRAAQVQRLEANHGLLVARGKLHVLLFKEETEIPARAFQKAPELLGPEDQLVLGPEQPEDEVGESSDEEPVESRAQRLRRTGLQKVQSLKRAFSSRKGSEAAQPTPVKPPRLGPVRNSEGPAEGQPAAQPAMEPVLPSALEPEPPQPTKEDPERPVLQIESAA", "length": 263 }, "evidence": [ { "id": "F1RMM0", "url": "https://omabrowser.org/oma/group/F1RMM0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "pmid": "" }, { "name": "caveola", "id": "GO:0005901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005901", "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase C binding", "id": "GO:0005080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005080", "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1RMM0", "url": "https://www.uniprot.org/uniprotkb/F1RMM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RMM0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 262, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RMM0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RMM0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RNZ0-1", "uniprot_ac": "F1RNZ0", "uniprot_id": "F1RNZ0_PIG", "mass": { "chemical_mass": 31761.0, "monoisotopic_mass": 31761.0 }, "refseq": { "ac": "XP_003127051", "name": "pleckstrin homology domain-containing family F member 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127051" }, "gene_names": [ { "name": "PLEKHF1", "type": "recommended", "evidence": [ { "id": "F1RNZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0" } ] }, { "name": "PLEKHF1", "type": "synonym", "evidence": [ { "id": "XP_003127051", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127051" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family F member 1", "type": "recommended", "evidence": [ { "id": "F1RNZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family F member 1", "type": "synonym", "evidence": [ { "id": "XP_003127051", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127051" } ] } ], "function": [ { "annotation": "May induce apoptosis through the lysosomal-mitochondrial pathway. Translocates to the lysosome initiating the permeabilization of lysosomal membrane (LMP) and resulting in the release of CTSD and CTSL to the cytoplasm. Triggers the caspase-independent apoptosis by altering mitochondrial membrane permeabilization (MMP) resulting in the release of PDCD8.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RAS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAS5#function" }, { "database": "UniProtKB", "id": "ARBA00058022", "url": "https://www.uniprot.org/uniprotkb/ARBA00058022#function" }, { "database": "UniProtKB", "id": "F1RNZ0", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RNZ0", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEKHF1", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0", "locus": { "chromosome": "6", "start_pos": 39797583, "end_pos": 39786199, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002852", "url": "https://www.ensembl.org/id/ENSSSCG00000002852" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002852", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002852", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01218", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01218", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522869", "url": "https://www.ncbi.nlm.nih.gov/gene/100522869", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522869", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522869", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DDKADQW", "url": "https://omabrowser.org/oma/group/DDKADQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RNZ0", "url": "https://www.orthodb.org/?gene=F1RNZ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46280:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46280:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127051", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127051", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RAS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNZ0", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RNZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDYLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLEPLPETLQAKNRWMIKTAKKSFVVSAASATERQEWISHIEECVRRQLLATGLQPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKPLRVCSLCFRELAAQKQKEEEEEEEEEEQGPRVPGQPAYLAGAVCGASSGDDDDSDEDREGGDGDWPSRVEFYAGGVSWSSFHS", "length": 283, "header": "tr|F1RNZ0-1|F1RNZ0_PIG Isoform 1 of Pleckstrin homology domain-containing family F member 1 OS=Sus scrofa OX=9823 GN=PLEKHF1 PE=1 SV=1 CANONICAL=F1RNZ0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RAS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAS5/entry", "sequence": { "sequence": "MSWGVAAECPKMVDYLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLEPLPETLQAKNRWMIKTAKKSFVVSAASATERQEWISHIEECVRRQLLATGLQPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKPLRVCSLCFRELAAQKQKEEEEEEEEEEQGPRVPGQPAYLAGAVCGASSGDDDDSDEDREGGDGDWPSRVEFYAGGVSWSSFHS", "length": 294, "header": "tr|A0A5G2RAS5-1|A0A5G2RAS5_PIG Computationally mapped isoform of Pleckstrin homology domain-containing family F member 1 OS=Sus scrofa OX=9823 GN=PLEKHF1 PE=1 SV=1 CANONICAL=F1RNZ0-1" }, "locus": { "chromosome": "6", "start_pos": 39796846, "end_pos": 39795903, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088231.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088231.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071240.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071240.1" } ] } }, { "isoform_ac": "F1RNZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0/entry", "sequence": { "sequence": "MVDYLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLEPLPETLQAKNRWMIKTAKKSFVVSAASATERQEWISHIEECVRRQLLATGLQPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKPLRVCSLCFRELAAQKQKEEEEEEEEEEQGPRVPGQPAYLAGAVCGASSGDDDDSDEDREGGDGDWPSRVEFYAGGVSWSSFHS", "length": 283, "header": "tr|F1RNZ0-1|F1RNZ0_PIG Isoform 1 of Pleckstrin homology domain-containing family F member 1 OS=Sus scrofa OX=9823 GN=PLEKHF1 PE=1 SV=1 CANONICAL=F1RNZ0-1" }, "locus": { "chromosome": "6", "start_pos": 39796846, "end_pos": 39795998, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003153.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003153.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003072.1", "url": "https://www.ensembl.org/id/ENSSSCP00000003072.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RNZ0", "url": "https://www.uniprot.org/uniprotkb/F1RNZ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522869", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522869", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZPT2-1", "protein_name": "Pleckstrin homology domain-containing family F member 1", "gene_name": "PLEKHF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSVQSEMGDWLQRPRMSSLCCIQPIVSQLTALARRLCSCAGRDRRAWLRSPPAVTVQKLPVCEVFQGELEMVDHLANTEINSQRIAAVENCFGASGQPLAVPGRVLLGEGILTKECRKKPKPRIFFLFNDILVYGSIVINKRKYNSQHIIPLEDVTLETLPDTLQMKNRWMIKTSKKSFVVSAASLTERKEWISHLEECIRHLLTKTGRQPSTEHAAPWIPDKATDICMRCTQTKFSTLTRRHHCRKCGFVVCGDCSRQRFLMPRLSPKPLRVCNLCYRQLLAEQKKEEEADCQQPEQYRSAIPGYEPSSGDDSDKSDDYKVDQWPADTEFYTSEVSWSSFHS", "length": 343 }, "evidence": [ { "id": "F1RNZ0", "url": "https://omabrowser.org/oma/group/F1RNZ0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q68FU1-1", "protein_name": "Pleckstrin homology domain-containing family F member 1", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AG61-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASA3", "url": "https://www.uniprot.org/uniprotkb/A0A287ASA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ASA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJM4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR91", "url": "https://www.uniprot.org/uniprotkb/A0A287BR91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIJ7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP31-1", "url": "https://www.uniprot.org/uniprotkb/F1RP31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSAVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSAQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPTFSSPGGLSLGNVTAWQQPQQPQQPPQPQPPQPQPQPQPQPPQQPQQPPQQQPHLVPVSLSSLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPATRPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK", "length": 510, "header": "tr|F1RP31-1|F1RP31_PIG Isoform 1 of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=4 SV=3 CANONICAL=F1RP31-1" }, "isoforms": [ { "isoform_ac": "A0A287AG61-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AG61/entry", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGGPCWGETS", "length": 140, "header": "tr|A0A287AG61-1|A0A287AG61_PIG Computationally mapped isoform of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=4 SV=2 CANONICAL=F1RP31-1" }, "locus": { "chromosome": "4", "start_pos": 93603055, "end_pos": 93599098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060431.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060431.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042967.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042967.2" } ] } }, { "isoform_ac": "A0A287ASA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ASA3/entry", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIEALHKKHRECESPEVDEVFALTPQTEEKYKKIDEEFDKMMQSYRLASAVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSAQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPTFSSPGGLSLGNVTAWQQPQQPQQPPQPQPPQPQPQPQPQPPQQPQQPPQQQPHLVPVSLSSLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPATRPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWVL", "length": 515, "header": "tr|A0A287ASA3-1|A0A287ASA3_PIG Computationally mapped isoform of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=1 SV=3 CANONICAL=F1RP31-1" }, "locus": { "chromosome": "4", "start_pos": 93612753, "end_pos": 93599098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038518.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038518.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046744.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046744.3" } ] } }, { "isoform_ac": "A0A287BJM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJM4/entry", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSAVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSAQLGAPSRKPDLRVITSQGGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPTFSSPGGLSLGNVTAWQQPQQPQQPPQPQPPQPQPQPQPQPPQQPQQPPQQQPHLVPVSLSSLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPATRPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWVL", "length": 516, "header": "tr|A0A287BJM4-1|A0A287BJM4_PIG Computationally mapped isoform of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=1 SV=1 CANONICAL=F1RP31-1" }, "locus": { "chromosome": "4", "start_pos": 93612753, "end_pos": 93599098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065772.1", "url": "https://www.ensembl.org/id/ENSSSCT00000065772.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056808.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056808.1" } ] } }, { "isoform_ac": "A0A287BR91-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR91/entry", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSAVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSAQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPTFSSPGGLSLGNVTAWQQPQQPQQPPQPQPPQPQPQPQPQPPQQPQQPPQQQPHLVPVSLSSLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPATRPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWVL", "length": 509, "header": "tr|A0A287BR91-1|A0A287BR91_PIG Computationally mapped isoform of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=4 SV=1 CANONICAL=F1RP31-1" }, "locus": { "chromosome": "4", "start_pos": 93612753, "end_pos": 93599098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042780.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042780.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058965.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058965.1" } ] } }, { "isoform_ac": "A0A5G2QIJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIJ7/entry", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSAVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSAQLGAPSRKPDLRVITSQGGKGLMHHLVSGYLDQGNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPTFSSPGGLSLGNVTAWQQPQQPQQPPQPQPPQPQPQPQPQPPQQPQQPPQQQPHLVPVSLSSLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPATRPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWVL", "length": 517, "header": "tr|A0A5G2QIJ7-1|A0A5G2QIJ7_PIG Computationally mapped isoform of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=4 SV=1 CANONICAL=F1RP31-1" }, "locus": { "chromosome": "4", "start_pos": 93612753, "end_pos": 93599098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075823.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075823.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064615.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064615.1" } ] } }, { "isoform_ac": "F1RP31-1", "url": "https://www.uniprot.org/uniprotkb/F1RP31/entry", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSAVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSAQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPTFSSPGGLSLGNVTAWQQPQQPQQPPQPQPPQPQPQPQPQPPQQPQQPPQQQPHLVPVSLSSLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPATRPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK", "length": 510, "header": "tr|F1RP31-1|F1RP31_PIG Isoform 1 of Myocyte enhancer factor 2D OS=Sus scrofa OX=9823 GN=MEF2D PE=4 SV=3 CANONICAL=F1RP31-1" }, "locus": { "chromosome": "4", "start_pos": 93613067, "end_pos": 93599098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007100.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007100.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006908.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006908.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 165, "start_aa": "Thr", "end_pos": 165, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr165", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 309, "start_aa": "Thr", "end_pos": 309, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr309", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-525793", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-525793", "resource": "Reactome", "description": "Myogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "O89038-1", "protein_name": "Myocyte-specific enhancer factor 2D", "gene_name": "Mef2d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSSVPAPNFAMPVTVPVSNQSSMQFSNPSSSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGRDLNSANGACPNPVGNGYVSARASPGLLPVANGNGLNKVIPAKSPPPPTHNTQLGAPSRKPDLRVITSQGGKGLMHHLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLPSAELSSLPAFSSPAGLALGNVTAWQQPQQPQQPQPPQPPQSQPQPPQPQPQQPPQQQPHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGEGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK", "length": 507 }, "evidence": [ { "id": "F1RP31", "url": "https://omabrowser.org/oma/group/F1RP31/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14814-1", "protein_name": "Myocyte-specific enhancer factor 2D", "gene_name": "MEF2D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSTVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSSLTDPRLLSPQQPALQRNSVSPGLPQRPASAGAMLGGDLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVTAWQQPQQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAPPPPAVFPAARPEPGDGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTWTLK", "length": 521 }, "evidence": [ { "id": "F1RP31", "url": "https://omabrowser.org/oma/group/F1RP31/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "positive regulation of vascular associated smooth muscle cell proliferation", "id": "GO:1904707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904707", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "adult heart development", "id": "GO:0007512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007512", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "histone deacetylase binding", "id": "GO:0042826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042826", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1RP31", "url": "https://www.uniprot.org/uniprotkb/F1RP31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RP31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RP31" }, { "id": "PS50066", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50066" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MADS-box", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 61, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 165, 309 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 353, "end_pos": 355 }, { "start_pos": 49, "end_pos": 51 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QF59", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QF59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH20", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH20-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJC5", "url": "https://www.uniprot.org/uniprotkb/F1RJC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RJC5-1", "url": "https://www.uniprot.org/uniprotkb/F1RJC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSTHHRTVREDYGDKVKASHWSRSPLRPPRERFELGDGRKPVKEEKVEERDLLSDLQDVSDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSSSEESEEEEEEEEEEETGSNSEDASGQSAEEVSEEDVSEEEEREDDNHVLVVPESRFDRDSGESEEGEEEAGEGTPQSSALTEGDFVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKVFKDLGTPSEKIWPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRVSAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF", "length": 780, "header": "tr|F1RJC5-1|F1RJC5_PIG Isoform 1 of Galactosyltransferase-associated protein kinase p58/GTA OS=Sus scrofa OX=9823 GN=CDK11 PE=1 SV=3 CANONICAL=F1RJC5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QF59-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF59/entry", "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSTHHRTVREDYGDKVKASHWSRSPLRPPRERFELGDGRKPVKEEKVEERDLLSDLQDVSDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSSSEESEEEEEEEEEEETGSNSEDASGQSAGEPPAVWFDGIPESRFDRDSGESEEGEEEAGEGTPQSSALTEGDFVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKVFKDLGTPSEKIWPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSDQGFDLMNKCVRIRPRPAHAPGPAPPPRSSALFSQVPDLLPRAEGQCRGRPEARVFPRDTPPHRPLHVPHVARQERAAESEARHQPATPRGRPGLQPAGRRRPEGDGFPPHHHQPGCLGRRPGLQPQVLRFGPPGAVDLGGLGAPGSGPRSHSGEARQPGTHLQSRTASLGEFSTFWFYFILYICRIKSHFPCRGRSAVCFRAYQPCSALCPHPTPLSPP", "length": 886, "header": "tr|A0A5G2QF59-1|A0A5G2QF59_PIG Computationally mapped isoform of Galactosyltransferase-associated protein kinase p58/GTA OS=Sus scrofa OX=9823 GN=CDK11 PE=1 SV=2 CANONICAL=F1RJC5-1" }, "locus": { "chromosome": "6", "start_pos": 63818140, "end_pos": 63804923, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081028.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081028.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062360.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062360.2" } ] } }, { "isoform_ac": "A0A5G2QH20-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH20/entry", "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSTHHRTVREDYGDKVKASHWSRSPLRPPRERFELGDGRKPVKEEKVEERDLLSDLQDVSDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSSSEESEEEEEEEEEEETGSNSEDASGQSAEEVSEEDVSEEEEREDDNHVLVVPESRFDRDSGESEEGEEEAGEGTPQSSALTEGDFVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKVFKDLGTPSEKIWPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSDQGFDLMNKCVRIRPRPAHAPGPAPPPRSSALFSQVPDLLPRAEGQCRGRPEARVFPRDTPPHRPLHVPHVARQERAAESEARHQPATPRGRPGLQPAGRRRPEGDGFPPHHHQPGCLGRRPGLQPQVLRFGPPGAVDLGGLGAPGSGPRSHSGEARQPGTHLQSRTASLGEFSTFWFYFILYICRIKSHFPC", "length": 871, "header": "tr|A0A5G2QH20-1|A0A5G2QH20_PIG Computationally mapped isoform of Galactosyltransferase-associated protein kinase p58/GTA OS=Sus scrofa OX=9823 GN=CDK11 PE=1 SV=1 CANONICAL=F1RJC5-1" }, "locus": { "chromosome": "6", "start_pos": 63818140, "end_pos": 63805004, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078044.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078044.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063114.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063114.1" } ] } }, { "isoform_ac": "F1RJC5-1", "url": "https://www.uniprot.org/uniprotkb/F1RJC5/entry", "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSTHHRTVREDYGDKVKASHWSRSPLRPPRERFELGDGRKPVKEEKVEERDLLSDLQDVSDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSSSEESEEEEEEEEEEETGSNSEDASGQSAEEVSEEDVSEEEEREDDNHVLVVPESRFDRDSGESEEGEEEAGEGTPQSSALTEGDFVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKVFKDLGTPSEKIWPGYNDLPAVKKMTFTEYPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRVSAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF", "length": 780, "header": "tr|F1RJC5-1|F1RJC5_PIG Isoform 1 of Galactosyltransferase-associated protein kinase p58/GTA OS=Sus scrofa OX=9823 GN=CDK11 PE=1 SV=3 CANONICAL=F1RJC5-1" }, "locus": { "chromosome": "6", "start_pos": 63818140, "end_pos": 63805198, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003721.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003721.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003635.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003635.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RJC5", "url": "https://www.uniprot.org/uniprotkb/F1RJC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" } ], "orthologs": [ { "uniprot_canonical_ac": "P21127-1", "protein_name": "Cyclin-dependent kinase 11B", "gene_name": "CDK11B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPGEARPAPAQKPAQLKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSEIDQINKVFKDLGTPSEKIWPGYSELPAVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF", "length": 795 }, "evidence": [ { "id": "F1RJC5", "url": "https://omabrowser.org/oma/group/F1RJC5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P24788-1", "protein_name": "Cyclin-dependent kinase 11B", "gene_name": "Cdk11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKAHHRKDEKRKEKRRHRSHSAEGGKHARVKEKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKLREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREEYSDKGKVGHWSRSPLRPPRERFEMGDNRKPVKEEKVEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEEETGSNSEEASEQSAEEVSDEEMSEDEDRENENHILVVPESRFDRDSGDSEEGEEEVGEGTPQSSAPTEGDYVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGKSDIDQINKIFKDLGTPSEKIWPGYNDLPAVKKMTFSEYPYNNLRKRFGALLSDQGFDLMNKFLTYYPGRRINAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF", "length": 784 }, "evidence": [ { "id": "F1RJC5", "url": "https://omabrowser.org/oma/group/F1RJC5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P46892-1", "protein_name": "Cyclin-dependent kinase 11B", "gene_name": "Cdk11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKSEKSRTTSWLFQSHEVTEILGRVKKNRKKLVKGLHRAGPPPEKNYLPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPLTSIREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLSGVKHLHDNWILHRDLKTSNLLLTHAGILKVGDFGLAREYGSPLKAYTPVVVTLWYRAPELLLGAKEYSTACDMWSVGCIFGELLTQKPLFPGKSDIDQINKIFKDIGTPSEKIWPGYSELPAVKKMTFSELPYNNLRKRFGALLSDQGFDLMNKFLTYYPGRRINAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQCVKRGTSPKPPEGGLGYSQLGDDDLKETGFHLTTTNDGAVSCRPWCSLLF", "length": 436 }, "evidence": [ { "id": "F1RJC5", "url": "https://omabrowser.org/oma/group/F1RJC5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UQ88-1", "protein_name": "Cyclin-dependent kinase 11A", "gene_name": "CDK11A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDEKDSWKVKTLDEILQEKKRRKEQEEKAEIKRLKNSDDRDSKRDSLEEGELRDHCMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKWKHARVKEREHERRKRHREEQDKARREWERQKRREMAREHSRRERDRLEQLERKRERERKMREQQKEQREQKERERRAEERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPGEARPAPAQKPAQLKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYVPDSPALLPIELKQELPKYLPALQGCRSVEEFQCLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINTILKAQHPNIVTVREIVVGSNMDKIYIVMNYVEHDLKSLMETMKQPFLPGEVKTLMIQLLRGVKHLHDNWILHRDLKTSNLLLSHAGILKVGDFGLAREYGSPLKAYTPVVVTQWYRAPELLLGAKEYSTAVDMWSVGCIFGELLTQKPLFPGNSEIDQINKVFKELGTPSEKIWPGYSELPVVKKMTFSEHPYNNLRKRFGALLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRGTSPRPPEGGLGYSQLGDDDLKETGFHLTTTNQGASAAGPGFSLKF", "length": 783 }, "evidence": [ { "id": "F1RJC5", "url": "https://omabrowser.org/oma/group/F1RJC5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1RJC5", "url": "https://www.uniprot.org/uniprotkb/F1RJC5" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RJC5", "url": "https://www.uniprot.org/uniprotkb/F1RJC5" } ], "pmid": "" }, { "name": "cyclin-dependent protein serine/threonine kinase activity", "id": "GO:0004693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004693", "evidence": [ { "database": "UniProtKB", "id": "F1RJC5", "url": "https://www.uniprot.org/uniprotkb/F1RJC5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RJC5", "url": "https://www.uniprot.org/uniprotkb/F1RJC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10216", "name": "", "equation": "[DNA-directed RNA polymerase] + ATP = phospho-[DNA-directed RNA polymerase] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10216", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10216" } ] }, { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] }, { "id": "R-SSC-380311", "name": "Recruitment of Plk1 to centrosomes", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-380311", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380311" } ] }, { "id": "R-SSC-380455", "name": "Recruitment of CDK11p58 to the centrosomes", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-380455", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380455" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RJC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RJC5" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 423, "end_pos": 708, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RHJ2-1", "uniprot_ac": "F1RHJ2", "uniprot_id": "F1RHJ2_PIG", "mass": { "chemical_mass": 27060.0, "monoisotopic_mass": 27060.0 }, "refseq": {}, "gene_names": [ { "name": "HDGF", "type": "recommended", "evidence": [ { "id": "F1RHJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ] } ], "protein_names": [ { "name": "Heparin binding growth factor", "type": "synonym", "evidence": [ { "id": "F1RHJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HDGF", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2", "locus": { "chromosome": "4", "start_pos": 93351802, "end_pos": 93340882, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006468", "url": "https://www.ensembl.org/id/ENSSSCG00000006468" } ] } } ], "crossref": [ { "id": "F1RHJ2", "url": "https://alphafold.ebi.ac.uk/entry/F1RHJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006468", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006468", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12550", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12550", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12550:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12550:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFP2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RHJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPKADAAEGDGDKKGNAEGSSDEEGKLVIDEPTKEKNEKGALKRRAGDLLEDSPKRPKEAEDPEGEEKEVATLEGERPLPVEAEKNSTPSEPSSGRGPPPEEEEEEEEEEEEEEATKEDAEAPGIRDHER", "length": 242, "header": "tr|F1RHJ2-1|F1RHJ2_PIG Isoform 1 of Heparin binding growth factor OS=Sus scrofa OX=9823 GN=HDGF PE=1 SV=2 CANONICAL=F1RHJ2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFP2/entry", "sequence": { "sequence": "MHMDRGHFVPQPLGHLLATKFHKGRSVGAIPDVSVTPQIIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPKADAAEGDGDKKGNAEGSSDEEGKLVIDEPTKEKNEKGALKRRAGDLLEDSPKRPKEAEDPEGEEKEVATLEGERPLPVEAEKNSTPSEPSSGRGPPPEEEEEEEEEEEEEEATKEDAEAPGIRDHER", "length": 252, "header": "tr|A0A5G2QFP2-1|A0A5G2QFP2_PIG Computationally mapped isoform of Heparin binding growth factor OS=Sus scrofa OX=9823 GN=HDGF PE=1 SV=2 CANONICAL=F1RHJ2-1" }, "locus": { "chromosome": "4", "start_pos": 93350243, "end_pos": 93340882, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072601.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072601.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063552.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063552.2" } ] } }, { "isoform_ac": "F1RHJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2/entry", "sequence": { "sequence": "MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPKADAAEGDGDKKGNAEGSSDEEGKLVIDEPTKEKNEKGALKRRAGDLLEDSPKRPKEAEDPEGEEKEVATLEGERPLPVEAEKNSTPSEPSSGRGPPPEEEEEEEEEEEEEEATKEDAEAPGIRDHER", "length": 242, "header": "tr|F1RHJ2-1|F1RHJ2_PIG Isoform 1 of Heparin binding growth factor OS=Sus scrofa OX=9823 GN=HDGF PE=1 SV=2 CANONICAL=F1RHJ2-1" }, "locus": { "chromosome": "4", "start_pos": 93350243, "end_pos": 93341790, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007085.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007085.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006893.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006893.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "pmid": "" }, { "name": "transcription repressor complex", "id": "GO:0017053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017053", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1RHJ2", "url": "https://www.uniprot.org/uniprotkb/F1RHJ2" } ], "pmid": 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] }, { "id": "IPR010507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051284", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051284", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45736:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45736:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921084", "url": 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"evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049987.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049987.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054168.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054168.3" } ] } }, { "isoform_ac": "A0A480QQT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480QQT3/entry", "sequence": { "sequence": "MSQAAARGTPAAGVARGRQDQESHSGPLGERLAQVRAQSSLFISTARCSVGGSDLAEQTPVLLGSRAMATSLTDIGNSFDDPTSPLVKRSRNSSMEDDDDVVFVESIQPPSASAPVVTDQGNFAATEKETLQGNYSLMLPSSRDLASQKGKISETIVIDDEEDIETNGKEKKISSSFIEWVLPETKNRTKDLDFSTSSLSRSKTKTAVGPFNPGRMNGAGDEFQNGEFAAHHNPDSWISQSASFPRNQKQRGVDSLTPVASLPKQIFQPSVQQQPPKPPKITCANCKNPLQKGQTAYQRKGSAHLFCSTSCLSSFSLKRTAKKRITSKKDAPTKKATVVPQMESSETFHQFCKTSSVSPCEDIQNLSKRVLNKSRCTICSNLTEIRHEVSVNNVTHKLCSNQCFNKYRLANGLIMNCCEQCGQYLASKGAGNILVVEDQQMRFCCPSCVNEYKQIMETHSKKILASEKRKRSANREENERKLDGSSDVLLKDIEKIPEKKEKTSELQISAECNPDTSVIQQDLNLLPLSAMAGQCQEQLEEQQSEDSIIPPVLSADPGTWPRILSIDQRDALVENDPPQVRNFNFPKDNTGRKFSETYYTRILPNGEKTARSWLLYSTLKDSVFCLYCKLFGEGKNQLKNESGCKDWQHLSHILSKHEESEMHINNSVKYSKLKSDLNKTKTLEAADRKLEEKEGMEGVKLLYSVGLI", "length": 708, "header": "tr|A0A480QQT3-1|A0A480QQT3_PIG Computationally mapped isoform of Zinc finger MYM-type containing 5 OS=Sus scrofa OX=9823 GN=ZMYM5 PE=4 SV=1 CANONICAL=F1RN29-1" }, "locus": { "chromosome": "11", "start_pos": 616735, "end_pos": 577336, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063264.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063264.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052127.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052127.2" } ] } }, { "isoform_ac": "F1RN29-1", "url": "https://www.uniprot.org/uniprotkb/F1RN29/entry", "sequence": { "sequence": "MATSLTDIGNSFDDPTSPLVKRSRNSSMEDDDDVVFVESIQPPSASAPVVTDQGNFAATEKETLQGNYSLMLPSSRDLASQKGKISETIVIDDEEDIETNGKEKKISSSFIEWVLPETKNRTKDLDFSTSSLSRSKTKTAVGPFNPGRMNGAGDEFQNGEFAAHHNPDSWISQSASFPRNQKQRGVDSLTPVASLPKQIFQPSVQQQPPKPPKITCANCKNPLQKGQTAYQRKGSAHLFCSTSCLSSFSLKRTAKKRITSKKDAPTKKATVVPQMESSETFHQFCKTSSVSPCEDIQNLSKRVLNKSRCTICSNLTEIRHEVSVNNVTHKLCSNQCFNKYRLANGLIMNCCEQCGQYLASKGAGNILVVEDQQMRFCCPSCVNEYKQIMETHSKKILASEKRKRSANREENERKLDGSSDVLLKDIEKIPEKKEKTSELQISAECNPDTSVIQQDLNLLPLSAMAGQCQEQLEEQQSEDSIIPPVLSADPGTWPRILSIDQRDALVENDPPQVRNFNFPKDNTGRKFSETYYTRILPNGEKTARSWLLYSTLKDSVFCLYCKLFGEGKNQLKNESGCKDWQHLSHILSKHEESEMHINNSVKYSKLKSDLNKTKTLEAADRKLEEKEGMEGVKLLYSVGLI", "length": 641, "header": "tr|F1RN29-1|F1RN29_PIG Isoform 1 of Zinc finger MYM-type containing 5 OS=Sus scrofa OX=9823 GN=ZMYM5 PE=4 SV=3 CANONICAL=F1RN29-1" }, "locus": { "chromosome": "11", "start_pos": 604492, "end_pos": 577336, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010489.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010489.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010217.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010217.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RN29", "url": "https://www.uniprot.org/uniprotkb/F1RN29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1RN29", "url": "https://www.uniprot.org/uniprotkb/F1RN29" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RN29", "url": "https://www.uniprot.org/uniprotkb/F1RN29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { 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Peptide", "id": "ENSSSCP00000034591.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034591.2" } ] } }, { "isoform_ac": "A0A5G2R2T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2T4/entry", "sequence": { "sequence": "MSQESDNNKRLVALVPMPSDPPFNTRRAYTSEDEAWKSYLENPLTAATKAMMSINGDEDSAAALGLLYDYYKVPRDKRLLSLSKASDSQEDQETHRNCLGTSDAQSNLSGGENRVQVLKTVPVNLSLNQDHLENSKREQYSTNVPESPAIVPVSGITVVKAEDFTPVFMAPPVHYPRGDGEEQRVVIFEQTQYGVPSMASHGSFLKDDQRSTPDSTYSESFKDGAPEKFRSASVGAEEYMYDQTSSGTFQYTLEATKSLRQKQGEGPMTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDKNRDEQLKYWKYWHSRQHTAKQRVLDIADYKESFNTIGNIEEIAYNAVSFTWDVNEEAKIFITVNCLSTDFSSQKGVKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVFCDKGAERKIRDEERKQNRKKGKGQASQTQCNNSSDGKLAAIPLQKKSDITYFKTMPDLHSQPVLFIPDVHFANLQRTGQVYYNTDDEREGSSVLVKRMFRPMEEEFGPAPSKQMKEEGMKRVLLYVRKETDDVFDALMLKSPTVKGLMDAISEKYGLPVEKITKLYKKSKKGILVNMDDNIIEHYSNEDTFILHMESMVEGFKVTLMEI", "length": 626, "header": "tr|A0A5G2R2T4-1|F1S0Q6_PIG Computationally mapped isoform of Grainyhead like transcription factor 2 OS=Sus scrofa OX=9823 GN=GRHL2 PE=4 SV=1 CANONICAL=F1S0Q6-1" }, "locus": { "chromosome": "4", "start_pos": 35564558, "end_pos": 35374014, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072827.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072827.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070652.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070652.1" } ] } }, { "isoform_ac": "F1S0Q6-1", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6/entry", "sequence": { "sequence": "MSQESDNNKRLVALVPMPSDPPFNTRRAYTSEDEAWKSYLENPLTAATKAMMSINGDEDSAAALGLLYDYYKVPRDKRLLSLSKASDSQEDQDKRNCLGTSDAQSNLSGGENRVQVLKTVPVNLSLNQDHLENSKREQYSTNVPESPAIVPVSGITVVKAEDFTPVFMAPPVHYPRGDGEEQRVVIFEQTQYGVPSMASHGSFLKDDQRSTPDSTYSESFKDGAPEKFRSASVGAEEYMYDQTSSGTFQYTLEATKSLRQKQGEGPMTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDKNRDEQLKYWKYWHSRQHTAKQRVLDIADYKESFNTIGNIEEIAYNAVSFTWDVNEEAKIFITVNCLSTDFSSQKGVKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVFCDKGAERKIRDEERKQNRKKGKGQASQTQCNNSSDGKLAAIPLQKKSDITYFKTMPDLHSQPVLFIPDVHFANLQRTGQVYYNTDDEREGSVLVKRMFRPMEEEFGPAPSKQMKEEGMKRVLLYVRKETDDVFDALMLKSPTVKGLMDAISEKYGLPVEKITKLYKKSKKGILVNMDDNIIEHYSNEDTFILHMESMVEGFKVTLMEI", "length": 624, "header": "tr|F1S0Q6-1|F1S0Q6_PIG Isoform 1 of Grainyhead like transcription factor 2 OS=Sus scrofa OX=9823 GN=GRHL2 PE=4 SV=3 CANONICAL=F1S0Q6-1" }, "locus": { "chromosome": "4", "start_pos": 35564558, "end_pos": 35374014, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006649.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006649.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006470.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006470.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2T4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2T4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "epithelium migration", "id": "GO:0090132", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090132", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { "name": "keratinocyte differentiation", "id": "GO:0030216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030216", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { "name": "bicellular tight junction assembly", "id": "GO:0070830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070830", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { "name": "epithelial cell morphogenesis", "id": "GO:0003382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003382", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { "name": "lung epithelial cell differentiation", "id": "GO:0060487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060487", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q6", "url": "https://www.uniprot.org/uniprotkb/F1S0Q6" } ], "pmid": "" }, { 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"MLRAPRGRSGATFLKLAFAARTMAGEPTVSLSELRSLLASGRARLIDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFKALYSAEKPKLEEENLIFFCQMGKRGLQATQLAQGLGYKGARNYEGAYREWFQKEG", "length": 137, "header": "tr|F1S179-1|F1S179_PIG Isoform 1 of Thiosulfate sulfurtransferase like domain containing 1 OS=Sus scrofa OX=9823 GN=TSTD1 PE=1 SV=3 CANONICAL=F1S179-1" }, "locus": { "chromosome": "4", "start_pos": 89402592, "end_pos": 89401363, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006980.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006980.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006790.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006790.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VRY9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VRY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158075", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158075", "resource": "KEGG Pathway" }, { "id": "R-SSC-1614517", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614517", "resource": "Reactome", "description": "Sulfide oxidation to sulfate" } ], "orthologs": [ { "uniprot_canonical_ac": "E9PY03-1", "protein_name": "Thiosulfate sulfurtransferase (rhodanese)-like domain containing 1", "gene_name": "Tstd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRLAVLRHSHTSAAAGTMAGVPTVSFSELRSLVASGRARLFDVRSPEEAAAGTIPGALNIPVSELEIALNMDPAAFQTLYCAEKPKLEDKNLIFFCQMGRRGLQATQLAQGLGYTGARNYAGAYKEWLEKQG", "length": 133 }, "evidence": [ { "id": "F1S179", "url": "https://omabrowser.org/oma/group/F1S179/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3HU06-1", "protein_name": "Thiosulfate:glutathione sulfurtransferase", "gene_name": "Tstd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLRVALLRLSHTVASAGTMTGVPTVSFSELRSLLASGRARLFDVRSREEAEAGTIPGALNIPVSELEVALTMDPAAFQALYSAEKPKLEDKNLIFFCQLGKRGFQATQLAQSLGYTGARNYPGAYKEWLEKEG", "length": 133 }, "evidence": [ { "id": "F1S179", "url": "https://omabrowser.org/oma/group/F1S179/", "database": "OMA" } ], "glygen_name": 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"database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8NFU3-1", "protein_name": "Thiosulfate:glutathione sulfurtransferase", "gene_name": "TSTD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGAPTVSLPELRSLLASGRARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFQALYSAEKPKLEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEKES", "length": 115 }, "evidence": [ { "id": "F1S179", "url": "https://omabrowser.org/oma/group/F1S179/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "thiosulfate-thiol sulfurtransferase activity", "id": "GO:0050337", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050337", "evidence": [ { "database": "UniProtKB", "id": "F1S179", "url": "https://www.uniprot.org/uniprotkb/F1S179" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sulfide 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"yes" } }, { "uniprot_canonical_ac": "F1RW98-1", "uniprot_ac": "F1RW98", "uniprot_id": "F1RW98_PIG", "mass": { "chemical_mass": 31510.0, "monoisotopic_mass": 31510.0 }, "refseq": { "ac": "XP_020920486", "name": "ras suppressor protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920486" }, "gene_names": [ { "name": "RSU1", "type": "recommended", "evidence": [ { "id": "F1RW98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW98" } ] }, { "name": "RSU1", "type": "synonym", "evidence": [ { "id": "XP_020920486", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920486" } ] } ], "protein_names": [ { "name": "Ras suppressor protein 1", "type": "recommended", "evidence": [ { "id": "F1RW98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW98/entry#names_and_taxonomy" } ] }, { "name": "ras suppressor protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020920486", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920486" } ] } ], "function": [ { "annotation": "Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q990", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q990#function" }, { "database": "UniProtKB", "id": "ARBA00053823", "url": "https://www.uniprot.org/uniprotkb/ARBA00053823#function" }, { "database": "UniProtKB", "id": "A0A8W4F6H9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6H9#function" }, { "database": "UniProtKB", "id": "F1RW98", "url": "https://www.uniprot.org/uniprotkb/F1RW98#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RW98", "url": "https://www.uniprot.org/uniprotkb/F1RW98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RSU1", "url": "https://www.uniprot.org/uniprotkb/F1RW98", "locus": { "chromosome": "10", "start_pos": 45289422, "end_pos": 45079007, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011042", "url": "https://www.ensembl.org/id/ENSSSCG00000011042" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011042", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011042", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524759", "url": "https://www.ncbi.nlm.nih.gov/gene/100524759", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524759", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524759", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RHMQGGR", "url": "https://omabrowser.org/oma/group/RHMQGGR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RW98", "url": "https://www.orthodb.org/?gene=F1RW98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020920486", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920486", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q990", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q990", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q990-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q990-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6H9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F6H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW98", "url": "https://www.uniprot.org/uniprotkb/F1RW98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW98-1", "url": "https://www.uniprot.org/uniprotkb/F1RW98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLAHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQIFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLYGRHMQANPEPPKKNNDKSKKISRKPLTAKNK", "length": 277, "header": "tr|F1RW98-1|F1RW98_PIG Isoform 1 of Ras suppressor protein 1 OS=Sus scrofa OX=9823 GN=RSU1 PE=1 SV=3 CANONICAL=F1RW98-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q990-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q990/entry", "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLAHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQIFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLRHMGVPRVGVESELQMSKFHHSHRNAGSEPCLQPTP", "length": 281, "header": "tr|A0A5G2Q990-1|F1RW98_PIG Computationally mapped isoform of Ras suppressor protein 1 OS=Sus scrofa OX=9823 GN=RSU1 PE=1 SV=1 CANONICAL=F1RW98-1" }, "locus": { "chromosome": "10", "start_pos": 45196123, "end_pos": 45079513, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080977.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080977.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060502.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060502.1" } ] } }, { "isoform_ac": "A0A8W4F6H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F6H9/entry", "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLAHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQIFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYRDNAGTLTRHRDLLGTSNFKQKPET", "length": 269, "header": "tr|A0A8W4F6H9-1|F1RW98_PIG Computationally mapped isoform of Ras suppressor protein 1 OS=Sus scrofa OX=9823 GN=RSU1 PE=1 SV=1 CANONICAL=F1RW98-1" }, "locus": { "chromosome": "10", "start_pos": 45191462, "end_pos": 45079513, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105169.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105169.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074764.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074764.1" } ] } }, { "isoform_ac": "F1RW98-1", "url": "https://www.uniprot.org/uniprotkb/F1RW98/entry", "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLAHITQLVLSHNKLTTVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQIFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLYGRHMQANPEPPKKNNDKSKKISRKPLTAKNK", "length": 277, "header": "tr|F1RW98-1|F1RW98_PIG Isoform 1 of Ras suppressor protein 1 OS=Sus scrofa OX=9823 GN=RSU1 PE=1 SV=3 CANONICAL=F1RW98-1" }, "locus": { "chromosome": "10", "start_pos": 45288895, "end_pos": 45079513, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012086.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012086.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011778.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011778.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q990", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q990" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524759", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524759", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IKD0-1", "protein_name": "Ras suppressor protein 1", "gene_name": "rsu1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSKSLKKIVEESRDKNLPEVDMCDRGISNLLDIPGLFSLSSITQLVLSHNKLSAVPPNIADLKNLEVLNMFNNQIEELPTQISSLQKLKHLNLGMNRLSTLPRGFGSLPALEVLDLTYNNLNESSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLAKLQILSLRDNDLISLPREIGDLTQLKELHIQGNRLTVLPPELGNLDLTGPKQVFKAENNSWVTPIADQFQLGISHVFEYIRSETYKYLYGRHMQANPEAPKKNADKSKKISRKPLAAKNK", "length": 277 }, "evidence": [ { "id": "F1RW98", "url": "https://omabrowser.org/oma/group/F1RW98/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8I5ZQM5-1", "protein_name": "Ras suppressor protein 1", "gene_name": "Rsu1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISSMLDVNGLFSLAHITQLVLSHNKLTTVPPNVAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLYGRHMQANPEPPKKNNDKSKKISRKPLAAKNK", "length": 277 }, "evidence": [ { "id": "F1RW98", "url": "https://omabrowser.org/oma/group/F1RW98/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XHI1-1", "protein_name": "Ras suppressor protein 1", "gene_name": "RSU1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSKSLKKIVEESREKNQPEVDMCDRGISNMLDVPGLFTLSHITQLVLSHNKLTTVPANIADLRNIEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELVFMADTCRRTLNLRRRTMTSQRRSVVSLWQPGTNKSPACASGFISSTFLLHVPIIFQHICYYIVRKPRLEVKAIYCVCCFRGYCLRNTKLHTLLITVTFM", "length": 299 }, "evidence": [ { "id": "F1RW98", "url": "https://omabrowser.org/oma/group/F1RW98/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HN65-1", "protein_name": "Ras suppressor protein 1", "gene_name": "Rsu1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFSLAHITQLVLSHNKLTTVPPNVAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLNEHSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLYGRHMQANPEPPKKNNDKSKKISRKPLAAKNK", "length": 277 }, "evidence": [ { "id": "F1RW98", "url": "https://omabrowser.org/oma/group/F1RW98/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q15404-1", "protein_name": "Ras suppressor protein 1", "gene_name": "RSU1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSKSLKKLVEESREKNQPEVDMSDRGISNMLDVNGLFTLSHITQLVLSHNKLTMVPPNIAELKNLEVLNFFNNQIEELPTQISSLQKLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRDNDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEYIRSETYKYLYGRHMQANPEPPKKNNDKSKKISRKPLAAKNR", "length": 277 }, "evidence": [ { "id": "F1RW98", "url": "https://omabrowser.org/oma/group/F1RW98/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54EG0-1", "protein_name": "Ras suppressor protein 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGASLSKEIDKLREKKVTELELIDKGIDDLPNNIGTIETLKKLNLSKNNLKRLPPAIGNLKNLTLLNLFNNSLRELPHEITQLVNLESMNLSINKLKALPRGFGSFNHLFFLDVSYNSITELTTQIGLISTLKELHISFNELTELPVELSRCSELEVINASHNKILELPSEFSKLPKLKLLNITGNKLSFIPPDYGQLTKIEKIDFSKNPDIHKSLDQHAIRGPEVLIKYLKSDEYQSIYYSETKKPRPSGLTSSTENTTIPQNTTTTTTTTSKPEEEESSVPYH", "length": 285 }, "evidence": [ { "id": "F1RW98", "url": 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28428959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090479.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090479.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060574.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060574.1" } ] } }, { "isoform_ac": "F1S2K6-1", "url": "https://www.uniprot.org/uniprotkb/F1S2K6/entry", "sequence": { "sequence": "MASSKPQCPSLATTSRIHLRPLGVTKDDSFITETKNPQKRKLSQKRKTLLSCPFSIGGHLSPWPRYISDQTILHNRKPCSDDYQKRTNSWQQPLGTTKPRYLEQLENYLRKELLLLDLGTDSAQELRLQPFREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQREKIRALEPLKAKLVIVDEDCKERILAMRAEERYEISMLKKEKMNLLKLIDKKNEEKISLQSEVSKLRKNLAEEYLHYLSERDARKILIADLNELRYQREDMSLAQSPGIWGEDPMKLTLALKMARQDLTRTQMELNTMKANFGDVVPRRDFEMQEKVLKDLQEQLDSLRDDYEEVRKEHEMLLQLHMSTLKERDQFYSELQEIQRTSTPRPDWSKCKDVVAGGRDRWQMLAEGKNSDQLVDVLLEEIGEGLLREKDFFSGLGYGESIPTFLRFDGTVENKKPTKKDVVNILKDAWKERMAEEQKERFPDFFFNFLERRFGPGDAMAWAYTIFEYIKLFQSNEVMSQFHAVLMGKRKESVYIKQKERIAQLLKEMTNADSQNEGLLTVEQLSTVLKSAFPFKTDEKIQELMEAVGWHPSSSNADLLNYHILFTEDEEGQSTPFVQKLWEQYMEEKDAYLQELKLELGLELHEDVTLARMREALMNIDPTLDKQTLNSYLSQAFQFPMTELPEEGEEKEAGIVVQLQTALEQLHMSDVRRMGPREQEPAS", "length": 712, "header": "tr|F1S2K6-1|F1S2K6_PIG Isoform 1 of Translin associated factor X interacting protein 1 OS=Sus scrofa OX=9823 GN=TSNAXIP1 PE=4 SV=1 CANONICAL=F1S2K6-1" }, "locus": { "chromosome": "6", "start_pos": 28450118, "end_pos": 28428959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003065.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003065.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002986.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002986.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAY1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520430", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LNB3-1", "protein_name": "Translin-associated factor X-interacting protein 1", "gene_name": "Tsnaxip1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MANPQTRYYSFSKSRTGTQSSGGTAEVKGVEKRKLSQKRRTLPFQLSMGGHLSPWPTYTSGQTILYQRKPCSEDCRNRTNSWQQHPLGTSKPRYLEQLENYLRKELLLLDLGTDSAQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQREKIRALEPLKAKIITMNEDCSERILAMRAEERYEISLLKKEKMNLLKLIDKKNEEKISLQSEVSKLRKSLAEEYLRYLTERDARKILIGDLNELRYQREDMSLAQSPGVWGEDPVKLTLALKMTRQDLTRIQMELNTMKANFGDVVPRRDFEKQEKINLDLQEQLESLKADYEEVRKEHELLLQLHMTTLKERDQFYAELQEIQRTSTPRPDWTKCEGIIAGGSERWLMLAEGKNSDQLVDVLLEEIGSGLLREKDFFPGLGLEESVPAFLRFDGPVENKKPSKKEVVNILEDAWKERLAQEQKESFQDFFTNFLERRFGSNDAIAWAYTIFENIKLFRSIEVMNQFYAVLMGKRKETVYINQRETMSHLMKEMTNIDTQNEGLITMEQFSTILKTTFPLKKEEQIQELIEAAGWSPDINNVEMFNYRTLFTEDEEGQSEPFVQKLWEQYDSEKEAYLQELKEDLGQELTDEVSLSKMRVALMNIDPSLDKQTLCTYLSQAFQLPVAELPLEDEEKQEEIVVKLETALEQLRIADTKRVGLREPEPAS", "length": 705 }, "evidence": [ { "id": "F1S2K6", "url": "https://omabrowser.org/oma/group/F1S2K6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0ZFD5-1", "protein_name": "Translin associated factor X interacting protein 1", "gene_name": "TSNAXIP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAARRAVRGGTSPESSSEITSGQTHIRSAKPTLPKKQKALSLQLSARGQWSMWPAFAAGQTVLRNHKPCSAPEERTCSNEQALLTIPKPRHLEQLESYLRKELQTLDLTKGISQELKLQPYREIFEFFIDNFKTYKPLLSAIKNEYEATLAHQKEMIRALEPLKAMVTTVSEECTQQILALQEKEKVEINTLKQEKHHLLKFIDNMKEEKCSLQTQVEHLQMSVAEEYTRYLQEYGARKLLLAKLNDMHNEQLNVKQHQAQEKAVKGEDVVKLTLALKMARQDLTKAQVKLNAMTAEYGDVVPRRRFESLEKKYSDLLQEMKTLRKDFDQLHEEYGTLLEIHRETAEERDSFFTRLQEAERSHTPRPNWAKCSEVIPGGAERWDCLAKGKSSHQLVDVLLEEIGTGVLKEMNVFRGWGKGNKVPVHLRYEGEVKNKKPTKKDVVNILKDIWKEKTALDQQTGKRSSLPEFFLSYLQKKYGDASAVEWSYTLSEYMRLCPSNHVMSSFYEILTGKVAEEQYHSQNQLISDLQKELAACDSYSSGSLPSEQFRMALREAFPLKRRDAIQELVDASMFSLDSDDDFIDYISLFKEDEEGNPEPFVAKLRSQYVSEKQEYLQELKNSLGDVTEVDADDLKAAFCRIDPEISDQTLDAYIGLAYQVRREQPDQEVVPVDTILERLCVGDVRRVGPSPRKESTTDFEGE", "length": 703 }, "evidence": [ { "id": "F1S2K6", "url": "https://omabrowser.org/oma/group/F1S2K6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A5WVR3-1", "protein_name": "Translin-associated factor X-interacting protein 1", "gene_name": "tsnaxip1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAVKDLQLPPLLHSRSSSQFESNDDNNRGLQRHIANKMSRAKLIKQTKEKEKSYFSSEPAEVTFQKPRQIRNYGSLAKPRFLEQLECLLKRELEVLDNTQDSKVQELRLQVYQEVFGHLIEEFKTYKPILSAIKKEYDITLAHLRDQIRDLLPLRPKLVLVSEQCDKKILEMRVQEREEVRALKQECRHLQSVIESMRSQQSALQIQVDHLKEDLATQYQLYRDERDARKLLITRISTMQSTQDAEHDDNNEEDESEDPVVVKMALQVCREDLTKAQIELNRLQAEYSDVVPRRDWDNLNHLHEETLMKLETLQTDFNQVKSEYDTLLEVHQKSAPTTQQHGSDSQHIATTPRPNWEQCSDILGGTERCKELFEGQSSQKRLEILMKEINSQNQFFTGLGTSSDVPIYLRYEGKLKNLKLKKADVIKVIKEIWRNKMADNEKNDDPRDLQTFLHSYLVEQYKDKAGEWAYSLMESVQNNLKDDLICLFNDVLTGKVDESIYHGQTQLLSHLLKVLIQSDITQCGSLTVSEFSEALRKAFPLKSDQDIEELLAAAQTELESSGVRISYQTLYTEDTDGQHKEFLSLVKKQATAERLQYISELRAQLEGKGEVDAEQLWVAFKTIDPSLEPENLEWNLSVAFQTKESELQAQALEKEVVLQRLSVAHVKRAGPKG", "length": 673 }, "evidence": [ { "id": "F1S2K6", "url": "https://omabrowser.org/oma/group/F1S2K6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZU07-1", "protein_name": "Translin-associated factor X interacting protein 1", "gene_name": "Tsnaxip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANPQTRNQSFSKLRTRTQSSGGTPEAESIEKRKLSQKRRTLPLQLSMCGHLSPWPTYTSGQTILHKRKPCSDDSRNRANSWQQQPLSISKPRYLEQLENYLRKELLLLDLSTDSAQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQREKIRSLEPLKAKIVTVNEDCSERVLAMRAEERHEISVLKKEKMNLLKLIDKKNEEKISLQCEVAKLRKSLAEEYLRYLTERDARKILIGDLNELRYQREDMSLAQSPGVWGEDPVKLTLALKMTRQDLTRTQMELNTMKANFGDVVPRRDFEMQEKTNMELQEQLESLRGDYEEVRKEHEMLLQLHMSTLKERDQFYNELQEIQRTSTPRPDWTKCESVIAGGQERWLVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFGDSIPPFLRFDGPVKNKKPSKKEVVNLLKDAWKERVAEEQKESFPDFFFNFLERRFGVNEAMAWAYTIFENIKLFRSSEIMSQFYAVLMGKTLESVYINQKDTLFHLLKELINADTQNEGSITMEQFSTVLKTTFPLKKEEQIMELMEAAGWGPDSSNTDMLNYRSLFTEDEEGQSEPFVQKLWEQYNSEKEAYLEELKQELNMEPLEEVTLLKMRGTLMNIDPTMDRQTLSAYLSQAYQIPAIDVPLDDEERQGIISVTLETALDRLKMADTKRVGPREPEQAS", "length": 705 }, "evidence": [ { "id": "F1S2K6", "url": "https://omabrowser.org/oma/group/F1S2K6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2TAA8-1", "protein_name": "Translin-associated factor X-interacting protein 1", "gene_name": "TSNAXIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGGHLSPWPTYTSGQTILQNRKPCSDDYRKRVGSCQQHPFRTAKPQYLEELENYLRKELLLLDLGTDSTQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEGMLAHQREKIRALEPLKAKLVTVNEDCNERILAMRAEEKYEISLLKKEKMNLLKLIDKKNEEKISLQSEVTKLRKNLAEEYLHYLSERDACKILIADLNELRYQREDMSLAQSPGIWGEDPVKLTLALKMTRQDLTRTQMELNNMKANFGDVVPRRDFEMQEKTNKDLQEQLDTLRASYEEVRKEHEILMQLHMSTLKERDQFFSELQEIQRTSTPRPDWTKCKDVVAGGPERWQMLAEGKNSDQLVDVLLEEIGSGLLREKDFFPGLGYGEAIPAFLRFDGLVENKKPSKKDVVNLLKDAWKERLAEEQKETFPDFFFNFLEHRFGPSDAMAWAYTIFENIKIFHSNEVMSQFYAVLMGKRSENVYVTQKETVAQLLKEMTNADSQNEGLLTMEQFNTVLKSTFPLKTEEQIQELMEAGGWHPSSSNADLLNYRSLFMEDEEGQSEPFVQKLWEQYMDEKDEYLQQLKQELGIELHEEVTLPKLRGGLMTIDPSLDKQTVNTYMSQAFQLPESEMPEEGDEKEEAVVEILQTALERLQVIDIRRVGPREPEPAS", "length": 658 }, "evidence": [ { "id": "F1S2K6", "url": "https://omabrowser.org/oma/group/F1S2K6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99P25-1", "protein_name": "Translin-associated factor X-interacting protein 1", "gene_name": "Tsnaxip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANLQERKSFSKPRISIQASGGTPEAKGIEKRKLSQKRRTLPLQLSLGGHLSPWPTYTSGQTVLHNRKPCSDDSRNRANSCQQQSMSISKPKYLEQLENYLRKELLLLDLSTDSAQELRLQPYREIFEFFIEDFKTYKPLLSSIKNAYEVMLAHQKERIRSLEPLKAKIVTMNEDCSERVLAMRAEERYEISVLKKEKMNLLKLIDKKNEEKISLQSEVAKLRRSLAEEYLRYLTERDARKILIGDLNELRYQQEDMSLAQTPGVWGEDPVKLTLALKMTRQDLTRTQMELNTMKANSGDVVPRRDLEMQEKTNMELQEQLESLKADYEEVQKEHELLLQLHMSTLKERDQFYNELQEIQRTSTPRPDWTKCESIIAGGPERWLVLAEGKNSDQLVDVLLEEIGMGLLREKDFFPGLGFGDAIPPFLRFDGPVKNKKPSKKEVVNLLKDAWKERIAEEQKEPFPDFFFNFLERRFGVNDAMAWAYTIFENIKLFRSSEIMNQFYAVLMGKNLESVYINQKKTLSHLLKELLSVDTQNEGSITMEQFSTILKTTFPLKKEEQIQELMEAVGWGPDSSNTDMLNYRSLFNEDEEGQSEPFVQRLWEQYESDKEAYLEELKQELDLDPLEDVTLLKMRGTLMNIDPTMDKQTLSAYLSQAYQIPAIDVPLEDEEKQGIISIKVETALDRLRMADTKRVGPREPDPAS", "length": 704 }, "evidence": [ { "id": "F1S2K6", "url": "https://omabrowser.org/oma/group/F1S2K6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S2K6", "url": "https://www.uniprot.org/uniprotkb/F1S2K6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S2K6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2K6" }, { "id": "PF15739", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15739" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Translin-associated factor X-interacting protein 1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 106, "end_pos": 215, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RX25-1", "uniprot_ac": "F1RX25", "uniprot_id": "F1RX25_PIG", "mass": { "chemical_mass": 64393.0, "monoisotopic_mass": 64393.0 }, "refseq": { "ac": "XP_020926981", "name": "copine-4 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926981" }, "gene_names": [ { "name": "CPNE4", "type": "recommended", "evidence": [ { "id": "F1RX25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX25" } ] }, { "name": "CPNE4", "type": "synonym", "evidence": [ { "id": "XP_020926981", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926981" } ] } ], "protein_names": [ { "name": "Copine-4", "type": "recommended", "evidence": [ { "id": "F1RX25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX25/entry#names_and_taxonomy" } ] }, { "name": "Copine IV", "type": "synonym", "evidence": [ { "id": "F1RX25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX25/entry#names_and_taxonomy" } ] }, { "name": "copine-4 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020926981", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926981" } ] } ], "function": [ { "annotation": "Probable calcium-dependent phospholipid-binding protein that may play a role in calcium-mediated intracellular processes.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMT3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMT3#function" }, { "database": "UniProtKB", "id": "ARBA00057254", "url": "https://www.uniprot.org/uniprotkb/ARBA00057254#function" }, { "database": "UniProtKB", "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPNE4", "url": "https://www.uniprot.org/uniprotkb/F1RX25", "locus": { "chromosome": "13", "start_pos": 963773, "end_pos": 367651, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011178", "url": "https://www.ensembl.org/id/ENSSSCG00000011178" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011178", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011178", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01459", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01459", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04047", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04047", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04048", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04048", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157532", "url": "https://www.ncbi.nlm.nih.gov/gene/100157532", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RX25", "url": "https://www.orthodb.org/?gene=F1RX25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926981", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926981", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QAZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMT3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX25-1", "url": "https://www.uniprot.org/uniprotkb/F1RX25-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GN09", "url": "https://www.uniprot.org/uniprotkb/K7GN09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GN09-1", "url": "https://www.uniprot.org/uniprotkb/K7GN09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVEPSSSESIKKRVGKRMKKMSNIYESAANTLGIFNSPCLTKVELRVACKGISDRDALSKPDPCVILKMQSHGQWFEVDRTEVIRTCINPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGKSSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSFKVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNSGIVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEMYESSRTLAP", "length": 575, "header": "tr|F1RX25-1|F1RX25_PIG Isoform 1 of Copine-4 OS=Sus scrofa OX=9823 GN=CPNE4 PE=1 SV=3 CANONICAL=F1RX25-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QAZ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ4/entry", "sequence": { "sequence": "LWLPPSKNPEIKVALASQSIEINLQGKLRPRGRGGTESTTEVIRTCINPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGKSSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSFKVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNSGIVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEMYESSRTLAP", "length": 533, "header": "tr|A0A5G2QAZ4-1|F1RX25_PIG Computationally mapped isoform of Copine-4 OS=Sus scrofa OX=9823 GN=CPNE4 PE=1 SV=1 CANONICAL=F1RX25-1" }, "locus": { "chromosome": "13", "start_pos": 963304, "end_pos": 762856, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084414.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084414.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060589.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060589.1" } ] } }, { "isoform_ac": "A0A8W4FMT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMT3/entry", "sequence": { "sequence": "LWLPPSKNPEIKVALASQSIEINLQGHREGKKVDRTEVIRTCINPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGKSSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSFKVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNSGIVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEMYESSRTLAP", "length": 529, "header": "tr|A0A8W4FMT3-1|F1RX25_PIG Computationally mapped isoform of Copine-4 OS=Sus scrofa OX=9823 GN=CPNE4 PE=1 SV=1 CANONICAL=F1RX25-1" }, "locus": { "chromosome": "13", "start_pos": 963304, "end_pos": 762856, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095730.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095730.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080663.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080663.1" } ] } }, { "isoform_ac": "F1RX25-1", "url": "https://www.uniprot.org/uniprotkb/F1RX25/entry", "sequence": { "sequence": "MAVEPSSSESIKKRVGKRMKKMSNIYESAANTLGIFNSPCLTKVELRVACKGISDRDALSKPDPCVILKMQSHGQWFEVDRTEVIRTCINPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGKSSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSFKVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNSGIVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEMYESSRTLAP", "length": 575, "header": "tr|F1RX25-1|F1RX25_PIG Isoform 1 of Copine-4 OS=Sus scrofa OX=9823 GN=CPNE4 PE=1 SV=3 CANONICAL=F1RX25-1" }, "locus": { "chromosome": "13", "start_pos": 963304, "end_pos": 367974, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012241.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012241.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011926.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011926.3" } ] } }, { "isoform_ac": "K7GN09-1", "url": "https://www.uniprot.org/uniprotkb/K7GN09/entry", "sequence": { "sequence": "WRVCLTAGKGNLCSKNVRVDRTEVIRTCINPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGKSSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSFKVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNSGIVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEMYESSRTLAP", "length": 515, "header": "tr|K7GN09-1|F1RX25_PIG Computationally mapped isoform of Copine-4 OS=Sus scrofa OX=9823 GN=CPNE4 PE=1 SV=3 CANONICAL=F1RX25-1" }, "locus": { "chromosome": "13", "start_pos": 963304, "end_pos": 762964, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033415.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033415.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029258.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029258.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QAZ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to calcium ion", "id": "GO:0071277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071277", "evidence": [ { "database": "UniProtKB", "id": "F1RX25", "url": "https://www.uniprot.org/uniprotkb/F1RX25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RX25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX25" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 149, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 220, "end_pos": 222 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S1R4-1", "uniprot_ac": "F1S1R4", "uniprot_id": "F1S1R4_PIG", "mass": { "chemical_mass": 12842.0, "monoisotopic_mass": 12842.0 }, "refseq": { "ac": "XP_020936361", "name": "SH3 domain-binding glutamic acid-rich-like protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936361" }, "gene_names": [ { "name": "SH3BGRL", "type": "recommended", "evidence": [ { "id": "F1S1R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1R4" } ] }, { "name": "SH3BGRL", "type": "synonym", "evidence": [ { "id": "XP_020936361", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936361" } ] } ], "protein_names": [ { "name": "SH3 domain-binding glutamic acid-rich-like protein", "type": "recommended", "evidence": [ { "id": "F1S1R4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1R4/entry#names_and_taxonomy" } ] }, { "name": "SH3 domain-binding glutamic acid-rich-like protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020936361", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936361" } ] } ], "function": [ { "annotation": "Appears to function as an adapter protein that bridges proteins together or proteins with mRNAs. May function as a ubiquitin ligase-substrate adapter. Additionally, associates with translating cytoplasmic ribosomes and may promote the expression of specific mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCC6#function" }, { "database": "UniProtKB", "id": "ARBA00045879", "url": "https://www.uniprot.org/uniprotkb/ARBA00045879#function" }, { "database": "UniProtKB", "id": "A0A8W4FDH5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDH5#function" }, { "database": "UniProtKB", "id": "F1S1R4", "url": "https://www.uniprot.org/uniprotkb/F1S1R4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S1R4", "url": "https://www.uniprot.org/uniprotkb/F1S1R4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SH3BGRL", "url": "https://www.uniprot.org/uniprotkb/F1S1R4", "locus": {} } ], "crossref": [ { "id": "F1S1R4", "url": "https://alphafold.ebi.ac.uk/entry/F1S1R4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012452", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012452", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520772", "url": "https://www.ncbi.nlm.nih.gov/gene/100520772", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NEKEFMQ", "url": "https://omabrowser.org/oma/group/NEKEFMQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12232:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12232:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04908", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04908", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936361", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936361", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QCC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDH5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1R4", "url": "https://www.uniprot.org/uniprotkb/F1S1R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1R4-1", "url": "https://www.uniprot.org/uniprotkb/F1S1R4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENRRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLKAPPGSKEAEAQAKKQV", "length": 114, "header": "tr|F1S1R4-1|F1S1R4_PIG Isoform 1 of SH3 domain-binding glutamic acid-rich-like protein OS=Sus scrofa OX=9823 GN=SH3BGRL PE=1 SV=3 CANONICAL=F1S1R4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCC6/entry", "sequence": { "sequence": "FQSAAAALQPFAGLKLQPVFTGWRSVFILHLPLAPRRKCSGHCSCLLIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENRRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLKAPPGSKEAEAQAKKQV", "length": 146, "header": "tr|A0A5G2QCC6-1|F1S1R4_PIG Computationally mapped isoform of SH3 domain-binding glutamic acid-rich-like protein OS=Sus scrofa OX=9823 GN=SH3BGRL PE=1 SV=1 CANONICAL=F1S1R4-1" }, "locus": { "chromosome": "X", "start_pos": 64707472, "end_pos": 64617682, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068785.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068785.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059679.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059679.1" } ] } }, { "isoform_ac": "A0A8W4FDH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDH5/entry", "sequence": { "sequence": "MRLRIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENRRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLKAPPGSKGYIALFCLETLSNKMLGEAFLIELLYKEQLTCKKTSNDEKKTGEKQILDIEDNSLSPDKIEIPNKVLKASLTEQSNDTNKIKSVDELNVAKCKTASLPRKKCVCCVAHSKERTT", "length": 207, "header": "tr|A0A8W4FDH5-1|F1S1R4_PIG Computationally mapped isoform of SH3 domain-binding glutamic acid-rich-like protein OS=Sus scrofa OX=9823 GN=SH3BGRL PE=1 SV=1 CANONICAL=F1S1R4-1" }, "locus": { "chromosome": "X", "start_pos": 64787379, "end_pos": 64685305, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093173.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093173.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077311.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077311.1" } ] } }, { "isoform_ac": "F1S1R4-1", "url": "https://www.uniprot.org/uniprotkb/F1S1R4/entry", "sequence": { "sequence": "MAIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENRRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLKAPPGSKEAEAQAKKQV", "length": 114, "header": "tr|F1S1R4-1|F1S1R4_PIG Isoform 1 of SH3 domain-binding glutamic acid-rich-like protein OS=Sus scrofa OX=9823 GN=SH3BGRL PE=1 SV=3 CANONICAL=F1S1R4-1" }, "locus": { "chromosome": "X", "start_pos": 64707472, "end_pos": 64617747, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013618.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013618.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013250.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013250.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCC6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3I1P5-1", "protein_name": "SH3 domain-binding glutamic acid-rich-like protein", "gene_name": "Sh3bgrl", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVIRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPEDSRPATGYPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAPPGSKEAEAQAKQQA", "length": 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"categories": [ "Protein Classification" ] }, { "id": "IPR025986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051982", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051982", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45984", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45984", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45984:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45984:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13877", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13877", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14559", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14559", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QCX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0Q3-1", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAKDYPSLWGFGTTKTFKIPVEHLDFKYIEKCRDVKHLEKILCVLRSGEEGYYPELTEFCEKRLSGLAPASRALRKDKPAATASSFTAEEWEKIDGDIKSWVSEIKKEDDKMHFHETDTFPVMEDHLPPVRGANSHLHVAKEKNSKSRPAKKKIPRDYAEWDKFDVEKECSKIDDDYKEKTVINNRSHLSKIETRLDTAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISVLPTVAAYNNRAQAELKLQNWNSAFQDCEKVLQLEPGNLKALLRRATTYKHQNKLQEAIEDLNKVLAVEPANELAKKTLSEVERDLKISKPASKAQTKGKRMMIQEIENSEDEDEKGSGRKPEDGSGDKKAAEPAGAERATDPRAMGNIQKKLTRKSEGGKRQDRGAPRRGRAPEARADKRGQTRDSATAGGANGHPGGGRGAGDPAGLKSQGNELFKHGQFAEAALKYSAAIAQLEPAGSGSADDLSILYSNRAACYLKDGNCSGCIQDCNRALELHPFSVKPLLRRAMAYETLEQYQKAYVDYKTVLQIDCGIQVANDSINRITKILMALDGPSWREKLLRIPTVPTSAQLRAWQPVAEPPPDQGGDSCSHHQPGIIDEKMFTTLKEEGNQCVKDKNYKDALSKYSACLKINSKDCAIYTNRALCYLKLCQFEEAKQDCDQALQIDHGNVKACYRRALAQKGLKNYQNSLNDLHKVLQLDPRIVEAKMELEEVTRMLNTQDTAASLSPEKERRKIEIQEVNEGHKEEPERTSEEIATDCLASEKGDTSNGPREFYEKLSITKPNNAYEFGQVINAISTRKDKEACAHLLSITEPKDLPVLLSNKLEGDAFILLIQSLKTHLIEKDPSLVYQHLLYLSKAERFKMTLTLIRKGQEEQIQQLFDDLSDTPSKHFTLEDVQALKRQYEP", "length": 927, "header": "tr|F1S0Q3-1|F1S0Q3_PIG Isoform 1 of Sperm-associated antigen 1 OS=Sus scrofa OX=9823 GN=SPAG1 PE=4 SV=4 CANONICAL=F1S0Q3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCX1/entry", "sequence": { "sequence": "MTAKDYPSLWGFGTTKTFKIPVEHLDFKYIEKCRDVKHLEKILCVLRSGEEGYYPELTEFCEKRLSGLAPASRALRKDKPAATASSFTAEEWEKIDGDIKSWVSEIKKEDDKMHFHETDTFPVMEDHLPPVRGANSHLHVAKEKNSKSRPAKKKIPRDYAEWDKFDVEKECSKIDDDYKEKTVINNRSHLSKIETRLDTAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISVLPTVAAYNNRAQAELKLQNWNSAFQDCEKVLQLEPGNLKALLRRATTYKHQNKLQEAIEDLNKVLAVEPANELAKKTLSEVERDLKISKPASKAQTKGKRMMIQEIENSEDEDEKGSGRKPEDGSGDKSKISFLFGLCKKTLFCYIIGWKFSTRTEILSLPIF", "length": 403, "header": "tr|A0A5G2QCX1-1|F1S0Q3_PIG Computationally mapped isoform of Sperm-associated antigen 1 OS=Sus scrofa OX=9823 GN=SPAG1 PE=4 SV=1 CANONICAL=F1S0Q3-1" }, "locus": { "chromosome": "4", "start_pos": 36840798, "end_pos": 36796871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091429.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091429.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059884.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059884.1" } ] } }, { "isoform_ac": "F1S0Q3-1", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3/entry", "sequence": { "sequence": "MTAKDYPSLWGFGTTKTFKIPVEHLDFKYIEKCRDVKHLEKILCVLRSGEEGYYPELTEFCEKRLSGLAPASRALRKDKPAATASSFTAEEWEKIDGDIKSWVSEIKKEDDKMHFHETDTFPVMEDHLPPVRGANSHLHVAKEKNSKSRPAKKKIPRDYAEWDKFDVEKECSKIDDDYKEKTVINNRSHLSKIETRLDTAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISVLPTVAAYNNRAQAELKLQNWNSAFQDCEKVLQLEPGNLKALLRRATTYKHQNKLQEAIEDLNKVLAVEPANELAKKTLSEVERDLKISKPASKAQTKGKRMMIQEIENSEDEDEKGSGRKPEDGSGDKKAAEPAGAERATDPRAMGNIQKKLTRKSEGGKRQDRGAPRRGRAPEARADKRGQTRDSATAGGANGHPGGGRGAGDPAGLKSQGNELFKHGQFAEAALKYSAAIAQLEPAGSGSADDLSILYSNRAACYLKDGNCSGCIQDCNRALELHPFSVKPLLRRAMAYETLEQYQKAYVDYKTVLQIDCGIQVANDSINRITKILMALDGPSWREKLLRIPTVPTSAQLRAWQPVAEPPPDQGGDSCSHHQPGIIDEKMFTTLKEEGNQCVKDKNYKDALSKYSACLKINSKDCAIYTNRALCYLKLCQFEEAKQDCDQALQIDHGNVKACYRRALAQKGLKNYQNSLNDLHKVLQLDPRIVEAKMELEEVTRMLNTQDTAASLSPEKERRKIEIQEVNEGHKEEPERTSEEIATDCLASEKGDTSNGPREFYEKLSITKPNNAYEFGQVINAISTRKDKEACAHLLSITEPKDLPVLLSNKLEGDAFILLIQSLKTHLIEKDPSLVYQHLLYLSKAERFKMTLTLIRKGQEEQIQQLFDDLSDTPSKHFTLEDVQALKRQYEP", "length": 927, "header": "tr|F1S0Q3-1|F1S0Q3_PIG Isoform 1 of Sperm-associated antigen 1 OS=Sus scrofa OX=9823 GN=SPAG1 PE=4 SV=4 CANONICAL=F1S0Q3-1" }, "locus": { "chromosome": "4", "start_pos": 36840798, "end_pos": 36747711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006657.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006657.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006478.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006478.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" } ], "pmid": "" }, { "name": "dynein axonemal particle", "id": "GO:0120293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120293", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "single fertilization", "id": "GO:0007338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007338", "evidence": [ { "database": "UniProtKB", "id": "F1S0Q3", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 502, "end_pos": 504, "annotation": "n_glycosylation_sequon" }, { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S0Q3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 927, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S0Q3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S0Q3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S0Q3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0Q3" }, { "id": "PF13877", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13877" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA-polymerase II-associated protein 3-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 803, "end_pos": 893, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 186, "end_pos": 188 }, { "start_pos": 502, "end_pos": 504 }, { "start_pos": 558, "end_pos": 560 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RSS9-1", "uniprot_ac": "F1RSS9", "uniprot_id": "F1RSS9_PIG", "mass": { "chemical_mass": 56037.0, "monoisotopic_mass": 56037.0 }, "refseq": { "ac": "XP_020921213", "name": "beta-1,3-glucosyltransferase isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921213" }, "gene_names": [ { "name": "B3GLCT", "type": "recommended", "evidence": [ { "id": "F1RSS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ] }, { "name": "B3GLCT", "type": "synonym", "evidence": [ { "id": "XP_020921213", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921213" } ] } ], "protein_names": [ { "name": "Beta-1,3-glucosyltransferase", "type": "recommended", "evidence": [ { "id": "F1RSS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSS9/entry#names_and_taxonomy" } ] }, { "name": "Beta 3-glucosyltransferase", "type": "synonym", "evidence": [ { "id": "F1RSS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSS9/entry#names_and_taxonomy" } ] }, { "name": "Beta-3-glycosyltransferase-like", "type": "synonym", "evidence": [ { "id": "F1RSS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSS9/entry#names_and_taxonomy" } ] }, { "name": "beta-1,3-glucosyltransferase isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020921213", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921213" } ] } ], "function": [ { "annotation": "Beta-1,3-glucosyltransferase involved in one of the two pathways responsible for protein O-linked fucosylation, a unique post-translational modification of cysteine-knotted proteins that regulates various biological processes. This pathway targets proteins with Thrombospondin type-1 (TSP1) repeats (TSR) in the endoplasmic reticulum. It starts with POFUT2, which attaches fucose via an O-glycosidic bond to a conserved serine or threonine residue. B3GLCT extends this modification by transferring a glucose molecule from UDP-glucose to the fucose.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BMM2", "url": "https://www.uniprot.org/uniprotkb/A0A287BMM2#function" }, { "database": "UniProtKB", "id": "ARBA00094328", "url": "https://www.uniprot.org/uniprotkb/ARBA00094328#function" }, { "database": "UniProtKB", "id": "A0A5G2QD02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD02#function" }, { "database": "UniProtKB", "id": "A0A5G2QZ63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ63#function" }, { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9#function" }, { "database": "UniProtKB", "id": "A0A5G2QJQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "B3GLCT", "url": "https://www.uniprot.org/uniprotkb/F1RSS9", "locus": { "chromosome": "11", "start_pos": 7907049, "end_pos": 7792368, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009335", "url": "https://www.ensembl.org/id/ENSSSCG00000009335" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009335", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009335", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517236", "url": "https://www.ncbi.nlm.nih.gov/gene/100517236", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517236", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517236", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CATYPRF", "url": "https://omabrowser.org/oma/group/CATYPRF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RSS9", "url": "https://www.orthodb.org/?gene=F1RSS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10811", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10811", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02434", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02434", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5173214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020921213", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921213", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "70543", "url": "https://www.rhea-db.org/rhea/70543", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70547", "url": "https://www.rhea-db.org/rhea/70547", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BMM2", "url": "https://www.uniprot.org/uniprotkb/A0A287BMM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BMM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QD02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJQ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ63", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSS9-1", "url": "https://www.uniprot.org/uniprotkb/F1RSS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPPARRGRRLALPALLALFTCSLAFALVSEDMKKEVKQSKNLEKSNISKKTDIDLKEIVFVIQSQSNSFHAKKAEQLKKSILKQAADLTQELPRVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCDEETRIQMPQLLETLRSYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDFAAGWALSMPLVNKLTKRLKSEPLKSDFTIDLKHEIALYVWDGGRGPALTPVPEFCTDGGDASCATTFRALLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGRIEYYSDSEDSSIPTVDLGVPNTERGHCGKTFAILERFLNHSLDGVAWLVIVDDDTLISISRLQRLLSCYDASEPLVLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASKCRCYRNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPQDYLSHQVPISFHKHWNIDPVRVYFTWLAPREQGGAGQETPKGGREEL", "length": 499, "header": "tr|F1RSS9-1|F1RSS9_PIG Isoform 1 of Beta-1,3-glucosyltransferase OS=Sus scrofa OX=9823 GN=B3GLCT PE=1 SV=3 CANONICAL=F1RSS9-1" }, "isoforms": [ { "isoform_ac": "A0A287BMM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BMM2/entry", "sequence": { "sequence": "GAAEIKQSATNYLKEIVFVIQSQSNSFHAKKAEQLKKSILKQAADLTQELPRVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCDEETRIQMPQLLETLRSYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDFAAGWALSMPLVNKLTKRLKSEPLKSDFTIDLKHEIALYVWDGGRGPALTPVPEFCTDGGDASCATTFRALLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGRIEYYSDSEDSSIPTVDLGVPNTERGHCGKTFAILERFLNHSLDGVAWLVIVDDDTLISISRLQRLLSCYDASEPLVLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASKCRCYRNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPQDYLSHQVPISFHKHWNIDPVRVYFTWLAPREQGGAGQETPKGGREEL", "length": 456, "header": "tr|A0A287BMM2-1|A0A287BMM2_PIG Computationally mapped isoform of Beta-1,3-glucosyltransferase OS=Sus scrofa OX=9823 GN=B3GLCT PE=1 SV=2 CANONICAL=F1RSS9-1" }, "locus": { "chromosome": "11", "start_pos": 7905280, "end_pos": 7825464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051094.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051094.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057322.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057322.2" } ] } }, { "isoform_ac": "A0A5G2QD02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD02/entry", "sequence": { "sequence": "RSVEREIFVTRFTKKLIFFFPLKNLKEIVFVIQSQSNSFHAKKAEQLKKSILKQAADLTQELPRVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCDEETRIQMPQLLETLRSYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDFAAGWALSMPLVNKLTKRLKSEPLKSDFTIDLKHEIALYVWDGGRGPALTPVPEFCTDGGDASCATTFRALLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGRIEYYSDSEDSSIPTVDLGVPNTERGHCGKTFAILERFLNHSLDGVAWLVIVDDDTLISISRLQRLLSCYDASEPLVLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASKCRCYRNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPQDYLSHQVPISFHKHWNIDPVRVYFTWLAPREQGGAGQETPKGGREEL", "length": 468, "header": "tr|A0A5G2QD02-1|F1RSS9_PIG Computationally mapped isoform of Beta-1,3-glucosyltransferase OS=Sus scrofa OX=9823 GN=B3GLCT PE=1 SV=1 CANONICAL=F1RSS9-1" }, "locus": { "chromosome": "11", "start_pos": 7905280, "end_pos": 7826014, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076214.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076214.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062481.1" } ] } }, { "isoform_ac": "A0A5G2QJQ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJQ2/entry", "sequence": { "sequence": "MRPPARRGRRLALPALLALFTCSLAFALVSEDMKKEVKQSKNLEKSNISKKTDIDLKEIVFVIQSQSNSFHAKKAEQLKKSILKQAADLTQELPRVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCDEETRIQMPQLLETLRSYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDFAAGWALSMPLVNKLTKRLKSEPLKSDFTIDLKHEIALYVWDGGRGPALTPVPEFCTDGGDASCATTFRALLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGRIEYYSDSEDSSIPTVDLGVPNTERGHCGKTFAILERFLNHSLDGVAWLVIVDDDTLISISRLQRLLSCYDASEPLVLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASKCRCYRNDAPDDMVLGMCFSGLGIPVTHSPLFHQRVVPGTA", "length": 451, "header": "tr|A0A5G2QJQ2-1|F1RSS9_PIG Computationally mapped isoform of Beta-1,3-glucosyltransferase OS=Sus scrofa OX=9823 GN=B3GLCT PE=1 SV=1 CANONICAL=F1RSS9-1" }, "locus": { "chromosome": "11", "start_pos": 7893866, "end_pos": 7792498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082009.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082009.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064182.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064182.1" } ] } }, { "isoform_ac": "A0A5G2QZ63-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ63/entry", "sequence": { "sequence": "MKKEVKQSKNLEKSNISKKTDIDLKEIVFVIQSQSNSFHAKKAEQLKKSILKQAADLTQELPRVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCDEETRIQMPQLLETLRSYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDFAAGWALSMPLVNKLTKRLKSEPLKSDFTIDLKHEIALYVWDGGRGPALTPVPEFCTDGGDASCATTFRALLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGRIEYYSDSEDSSIPTVDLGVPNTERGHCGKTFAILERFLNHSLDGVAWLVIVDDDTLISISRLQRLLSCYDASEPLVLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASKCRCYRNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPQDYLSHQVPISFHKHWNIDPVRVYFTWLAPREQGGAGQETPKGGREEL", "length": 467, "header": "tr|A0A5G2QZ63-1|F1RSS9_PIG Computationally mapped isoform of Beta-1,3-glucosyltransferase OS=Sus scrofa OX=9823 GN=B3GLCT PE=1 SV=1 CANONICAL=F1RSS9-1" }, "locus": { "chromosome": "11", "start_pos": 7905280, "end_pos": 7806045, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074481.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074481.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070186.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070186.1" } ] } }, { "isoform_ac": "F1RSS9-1", "url": "https://www.uniprot.org/uniprotkb/F1RSS9/entry", "sequence": { "sequence": "MRPPARRGRRLALPALLALFTCSLAFALVSEDMKKEVKQSKNLEKSNISKKTDIDLKEIVFVIQSQSNSFHAKKAEQLKKSILKQAADLTQELPRVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCDEETRIQMPQLLETLRSYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDFAAGWALSMPLVNKLTKRLKSEPLKSDFTIDLKHEIALYVWDGGRGPALTPVPEFCTDGGDASCATTFRALLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGRIEYYSDSEDSSIPTVDLGVPNTERGHCGKTFAILERFLNHSLDGVAWLVIVDDDTLISISRLQRLLSCYDASEPLVLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASKCRCYRNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPQDYLSHQVPISFHKHWNIDPVRVYFTWLAPREQGGAGQETPKGGREEL", "length": 499, "header": "tr|F1RSS9-1|F1RSS9_PIG Isoform 1 of Beta-1,3-glucosyltransferase OS=Sus scrofa OX=9823 GN=B3GLCT PE=1 SV=3 CANONICAL=F1RSS9-1" }, "locus": { "chromosome": "11", "start_pos": 7905280, "end_pos": 7792498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010230.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010230.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009964.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009964.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QD02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QD02" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517236", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517236", "resource": "KEGG Pathway" }, { "id": "R-SSC-5173214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "resource": "Reactome", "description": "O-glycosylation of TSR domain-containing proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XWD7-1", "protein_name": "Beta-1,3-glucosyltransferase", "gene_name": "B3GLCT", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSRDPGRSRWLFLAACAHVFFLLPPLRTRAFALSVVLEDAEDKTEVPGLQKSEKRGTVSKRSKELKEVIFVIQSQSNSFHSKRAEDLKRDILKQTADLGKELPTVLLIHQMDRHEGAWTILPLMRDFSVAYGRNSSWIFFCEEDTRIQVVKLLEILRRFDTSKEWFLGKALYDEESTIIHHYAFAENPTVFKFPDFAAGWALSIPLVNKLATKLKSEPLKSDFTIDLKHEIALYIWQKGDGPHLTPVPEFCTDDVNSDKADQCATTFSNFLPLCGEPVKKEDVFVAVKTCRKFHGDRIPVVKQTWEREAALIEYYSDYRDISIPTIDLGIPNTERGHCGKTFAILERYLNHSSPRTPWLVIVDDDTLISIFRLRKLLSCYDPNEPVFLGERYGYGLGTGGYSYITGGGGMVFSRAAVQRLLASKCRCYSMDAPDDMVLGMCFSGLGIPITHSPLFHQARPMDYPKDYLSHQIPVSFHKHWNIDPVKVYFTWLAPNAEEALNGKKVEFNREDL", "length": 512 }, "evidence": [ { "id": "F1RSS9", "url": "https://omabrowser.org/oma/group/F1RSS9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TL60-1", "protein_name": "Beta-1,3-glucosyltransferase", "gene_name": "B3GLCT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLPPARRGRRLALPALLSLLTCSLAFALVSEDVKKEARQSKNLEKSDISKKNDIDLKEIVFVIQSQSNSFHVKKAEQLKQSILKQSTDLTQEMPTVLLLHQLAQQEGAWTILPLLPHFSVTYSRNSSWIFFCEEDTRIQIVQLLETLRRYDPSKEWFLGKALHDEESTIIHHYAFSENPTVFKYPDLAAGWALSIPLVNKLTKRLKSESLKSDFTIDLKHEIALYIWDGGDGLPLTPVPEFCTDIVGSSCATSFQSSLPLCGNPVKKEDIFVAVKTCKKFHGDRIPIVKQTWAGQAGHLEYYSDYADNSIPTVDLGIPNTDRGHCGKTFAILERFLNHSHDKIPWLVIVDDDTLISISRLRHLLSCYDTREPVFLGERYGYGLGTGGYSYVTGGGGMVFSKEAIRRLLASKCRCYSNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPKDYLSHQVPVSFHKHWNIDPVKVYFTWLAPDEEDRARQQSRRGLREEL", "length": 499 }, "evidence": [ { "id": "F1RSS9", "url": "https://omabrowser.org/oma/group/F1RSS9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LW29-1", "protein_name": "Beta-1,3-glucosyltransferase", "gene_name": "B3glct", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEGQKRASEVRCPEEGAVRLGSRTTYIRGGCERTPGRSRSRPPEGAARAGAAPGGRRGAREGSGAQGVRAARLREGRGASVAGMRPPALLALFSCSAAFALVSEEIKEKVTPSQDLRQSSLPRSHDIDLKEIVFVIQSQSNPFHARRAEQLRRNILRQAANLTQDLPRVLLLHQLAKQEGAWTILPLLPQFSVTYSKNSAWIFFCEEETRIQIPRLLETLRRYDPSKEWFLGKALYDEESTIIHHYAFSENPTVFKYPDFAAGWALSIPLVSKLTKKLKSEPLKSDFTIDLKHEIALYIWDKGGGPALTPVPEFCTEDSDPLCATTFHSFLPLCGMPVKKEEIFVAVKTCRKFHADRIPIVKKTWAAQASHIEYYSDYAETSIPTVDLGIPNTDRGHCGKTFAILERFLNHSHDKIAWLVIVDDDTLISISRLRHLLSCYDSSDPVFLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLASNCRCYSNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPKDYLSHQIPVSFHKHWHIDPVKVYLTWLAPSEEDQATQETQKDPREEL", "length": 573 }, "evidence": [ { "id": "F1RSS9", "url": "https://omabrowser.org/oma/group/F1RSS9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6Y288-1", "protein_name": "Beta-1,3-glucosyltransferase", "gene_name": "B3GLCT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPPACWWLLAPPALLALLTCSLAFGLASEDTKKEVKQSQDLEKSGISRKNDIDLKGIVFVIQSQSNSFHAKRAEQLKKSILKQAADLTQELPSVLLLHQLAKQEGAWTILPLLPHFSVTYSRNSSWIFFCEEETRIQIPKLLETLRRYDPSKEWFLGKALHDEEATIIHHYAFSENPTVFKYPDFAAGWALSIPLVNKLTKRLKSESLKSDFTIDLKHEIALYIWDKGGGPPLTPVPEFCTNDVDFYCATTFHSFLPLCRKPVKKKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEYYSDYTENSIPTVDLGIPNTDRGHCGKTFAILERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVFLGERYGYGLGTGGYSYITGGGGMVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPKDYLSHQVPISFHKHWNIDPVKVYFTWLAPSDEDKARQETQKGFREEL", "length": 498 }, "evidence": [ { "id": "F1RSS9", "url": "https://omabrowser.org/oma/group/F1RSS9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BHT6-1", "protein_name": "Beta-1,3-glucosyltransferase", "gene_name": "B3glct", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPPALLALFSCSAAFALMSEEIKEKVTPSQDLRQSSLPGRHDIDLKEIVFVIQSQSNSFHAKRAEQLKKNILKQAANLTQDLPRVLLLHQLAKQEGAWTILPLLPHFSVTYSKNSAWIFFCEEETRLQIPRLLDTLRRYDPSKEWFLGKALYDEESTIIHHYAFSENPTVFKYPDFAAGWALSIPLVNKLAKRLKSEALKSDFTIDLKHEIALYIWDKGGGPALTPVPEFCTEDVDPRCVTTFHSFLPLCGVPVKKEEIFVAVKTCKKFHADRIPIVKKTWAAQASLIEYYSDYAETAIPTVDLGIPNTDRGHCGKTFAILEKFLNHSHNKISWLVIVDDDTLISISRLRHLLSCYDSSDPVFLGERYGYGLGTGGYSYVTGGGGMVFSREAIRRLLVSSCRCYSNDAPDDMVLGMCFSGLGVPVTHSPLFHQARPVDYPKDYLAHQIPVSFHKHWHIDPVKVYLTWLAPSEEDQATQETQKDPREEL", "length": 489 }, "evidence": [ { "id": "F1RSS9", "url": "https://omabrowser.org/oma/group/F1RSS9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X2JDC2-1", "protein_name": "Fringe-like glycosyltransferase domain-containing protein", "gene_name": "Dmel\\CG9109", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPTRICVLFGLLCLASLCCGSNKPGEVLLVIACPPHPQQARSDCLALSHNVLEQQRALELAGIFPEDFVLKVHVMHELFNSWTMLDALPHLRAQARVLGARTEWIIWCQHNTRVSSLRGLLEQLRRQNPRELAFYGHALYDAEATIIHHFSNYKDPQRFPYPMLSAGVVFTGALLRRLADLVAPSGQNITVHSDFSIDASHELARFIFDNVSPDPHISTPISGGILLKSASYICSTPTSVPNRKLPCLLHAQPEEPLTLGQRRNGCEHTTGSHIYFAIKTCAKFHKERIPIIERTWAADARNRRYYSDVADVGIPAIGTGIPNVQTGHCAKTMAILQLSLKDIGKQLDIRWLMLVDDDTLLSLHLIHTHLPTSVPRVSALLCRHNATELVYLGQRYGYRLHAPDGFNYHTGGAGIVLSLPLVRLIVQRCSCPSASAPDDMILGYCLQALGVPAIHVAGMHQARPQDYAGELLQLHAPLTFHKFWNTDPEHTYRRWLGGSMVNRSAPLAAHKEQPAAGPLHMTMGRHSLAAGVGLLQQTGLGKHLDL", "length": 546 }, "evidence": [ { "id": "F1RSS9", "url": "https://omabrowser.org/oma/group/F1RSS9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "pmid": "" }, { "name": "acetylglucosaminyltransferase activity", "id": "GO:0008375", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008375", "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "pmid": "" }, { "name": "O-fucosylpeptide 3-beta-glucosyltransferase activity", "id": "GO:0160265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160265", "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein O-linked glycosylation via fucose", "id": "GO:0036066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036066", "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "pmid": "" }, { "name": "fucose metabolic process", "id": "GO:0006004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006004", "evidence": [ { "database": "UniProtKB", "id": "F1RSS9", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "70543", "name": "", "equation": "3-O-(alpha-L-fucosyl)-L-seryl-[protein] + UDP-alpha-D-glucose = 3-O-(beta-D-glucosyl-(1->3)-alpha-L-fucosyl)-L-seryl-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70543", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70543" } ] }, { "id": "70547", "name": "", "equation": "3-O-(alpha-L-fucosyl)-L-threonyl-[protein] + UDP-alpha-D-glucose = 3-O-(beta-D-glucosyl-(1->3)-alpha-L-fucosyl)-L-threonyl-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70547", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70547" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSS9" }, { "id": "PF02434", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02434" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fringe-like glycosyltransferase", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 206, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G08324ZK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G26040WE", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G36855WW", "type": "O-linked", "subtype": "O-fucose core 1" }, { "glytoucan_ac": "G45792OQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G72804UE", "type": "O-linked", "subtype": "O-fucose core 1" }, { "glytoucan_ac": "G97501SC", "type": "O-linked", "subtype": "O-fucose core, other" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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"https://www.orthodb.org/?gene=F1RWM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13555", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13555", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13555:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13555:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13913", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13913", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663071", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663071", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QDB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R831", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R831", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R831-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R831-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF65", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF65-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWM0", "url": "https://www.uniprot.org/uniprotkb/F1RWM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWM0-1", "url": "https://www.uniprot.org/uniprotkb/F1RWM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGLEENGSVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQYKPPALKKSNSPGTTSSGSSRLPQPSGTSKTVVGVPSGKMSSGSSSLGNKLQTLSPSHKGIPAPHVGANIKPRNTTPPSLARNPASGGLTSKRKTYTESYIARPDGDYISSLNGGNVKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL", "length": 323, "header": "tr|F1RWM0-1|F1RWM0_PIG Isoform 1 of Zinc finger C2HC domain-containing protein 1A OS=Sus scrofa OX=9823 GN=ZC2HC1A PE=1 SV=1 CANONICAL=F1RWM0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB4/entry", "sequence": { "sequence": "MEGENGSVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQYKPPALKKSNSPGTTSSGSSRLPQPSGTSKTVVGVPSGKMSSGSSSLGNKLQTLSPSHKGIPAPHVGKMDKLGPPLRTGRHMQRWYDSDTKSDSAIKRHELLPIYKANIKPRNTTPPSLARNPASGGLTSKRKTYTESYIARPDGDYISSLNGGNVKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL", "length": 360, "header": "tr|A0A5G2QDB4-1|F1RWM0_PIG Computationally mapped isoform of Zinc finger C2HC domain-containing protein 1A OS=Sus scrofa OX=9823 GN=ZC2HC1A PE=1 SV=2 CANONICAL=F1RWM0-1" }, "locus": { "chromosome": "4", "start_pos": 57806119, "end_pos": 57763747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077302.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077302.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061596.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061596.2" } ] } }, { "isoform_ac": "A0A5G2R831-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R831/entry", "sequence": { "sequence": "PIQPLKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQYKPPALKKSNSPGTTSSGSSRLPQPSGTSKTVVGVPSGKMSSGSSSLGNKLQTLSPSHKGIPAPHVGANIKPRNTTPPSLARNPASGGLTSKRKTYTESYIARPDGDYISSLNGGNVKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL", "length": 298, "header": "tr|A0A5G2R831-1|F1RWM0_PIG Computationally mapped isoform of Zinc finger C2HC domain-containing protein 1A OS=Sus scrofa OX=9823 GN=ZC2HC1A PE=1 SV=2 CANONICAL=F1RWM0-1" }, "locus": { "chromosome": "4", "start_pos": 57803202, "end_pos": 57763747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086501.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086501.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066766.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066766.2" } ] } }, { "isoform_ac": "A0A5G2RF65-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF65/entry", "sequence": { "sequence": "ELGGGGGCIGGSGGGCGCCARSVAKPYAEAQWRDWKKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQYKPPALKKSNSPGTTSSGSSRLPQPSGTSKTVVGVPSGKMSSGSSSLGNKLQTLSPSHKGIPAPHVGANIKPRNTTPPSLARNPASGGLTSKRKTYTESYIARPDGDYISSLNGGNVKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL", "length": 329, "header": "tr|A0A5G2RF65-1|F1RWM0_PIG Computationally mapped isoform of Zinc finger C2HC domain-containing protein 1A OS=Sus scrofa OX=9823 GN=ZC2HC1A PE=1 SV=1 CANONICAL=F1RWM0-1" }, "locus": { "chromosome": "4", "start_pos": 57819852, "end_pos": 57763747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079631.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079631.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069608.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069608.1" } ] } }, { "isoform_ac": "F1RWM0-1", "url": "https://www.uniprot.org/uniprotkb/F1RWM0/entry", "sequence": { "sequence": "MEGLEENGSVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKPTSRTQYKPPALKKSNSPGTTSSGSSRLPQPSGTSKTVVGVPSGKMSSGSSSLGNKLQTLSPSHKGIPAPHVGANIKPRNTTPPSLARNPASGGLTSKRKTYTESYIARPDGDYISSLNGGNVKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL", "length": 323, "header": "tr|F1RWM0-1|F1RWM0_PIG Isoform 1 of Zinc finger C2HC domain-containing protein 1A OS=Sus scrofa OX=9823 GN=ZC2HC1A PE=1 SV=1 CANONICAL=F1RWM0-1" }, "locus": { "chromosome": "4", "start_pos": 57819760, "end_pos": 57763747, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006756.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006756.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006573.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006573.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QDB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AU51-1", "protein_name": "Zinc finger C2HC domain-containing protein 1A", "gene_name": "Zc2hc1a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"length": 1278, "header": "tr|A0A287AVV3-1|A0A287AVV3_PIG Computationally mapped isoform of Cytoplasmic FMR1-interacting protein OS=Sus scrofa OX=9823 GN=CYFIP2 PE=1 SV=2 CANONICAL=F1RQE9-1" }, "locus": { "chromosome": "16", "start_pos": 65979806, "end_pos": 65855357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037510.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037510.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048040.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048040.2" } ] } }, { "isoform_ac": "A0A287BRC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRC0/entry", "sequence": { "sequence": "MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC", "length": 1227, "header": "tr|A0A287BRC0-1|A0A287BRC0_PIG Computationally mapped isoform of Cytoplasmic FMR1-interacting protein OS=Sus scrofa OX=9823 GN=CYFIP2 PE=1 SV=2 CANONICAL=F1RQE9-1" }, "locus": { "chromosome": "16", "start_pos": 65979806, "end_pos": 65855357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054700.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054700.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059181.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059181.2" } ] } }, { "isoform_ac": "A0A5G2QEM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEM2/entry", "sequence": { "sequence": "MCFMPGPRMAIERFCSEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC", "length": 1131, "header": "tr|A0A5G2QEM2-1|F1RQE9_PIG Computationally mapped isoform of Cytoplasmic FMR1-interacting protein OS=Sus scrofa OX=9823 GN=CYFIP2 PE=1 SV=1 CANONICAL=F1RQE9-1" }, "locus": { "chromosome": "16", "start_pos": 65966996, "end_pos": 65855357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066958.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066958.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060481.1" } ] } }, { "isoform_ac": "A0A5G2QG08-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG08/entry", "sequence": { "sequence": "MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMVMGFGLYLMDGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC", "length": 1057, "header": "tr|A0A5G2QG08-1|F1RQE9_PIG Computationally mapped isoform of Cytoplasmic FMR1-interacting protein OS=Sus scrofa OX=9823 GN=CYFIP2 PE=1 SV=1 CANONICAL=F1RQE9-1" }, "locus": { "chromosome": "16", "start_pos": 65979806, "end_pos": 65855357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066858.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066858.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063672.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063672.1" } ] } }, { "isoform_ac": "A0A5G2QNN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNN9/entry", "sequence": { "sequence": "MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQVMGFGLYLMDGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC", "length": 1117, "header": "tr|A0A5G2QNN9-1|F1RQE9_PIG Computationally mapped isoform of Cytoplasmic FMR1-interacting protein OS=Sus scrofa OX=9823 GN=CYFIP2 PE=1 SV=1 CANONICAL=F1RQE9-1" }, "locus": { "chromosome": "16", "start_pos": 65979806, "end_pos": 65855357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084611.1", "url": "https://www.ensembl.org/id/ENSSSCT00000084611.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066304.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066304.1" } ] } }, { "isoform_ac": "F1RQE9-1", "url": "https://www.uniprot.org/uniprotkb/F1RQE9/entry", "sequence": { "sequence": "MTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPSSIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVSEAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLMDGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIKTSAHYEENKSKWTCTQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSGLDSQKSDEEYRELFDLALRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEVIAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAIRKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKSGSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCKHMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVFQSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPPTNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRFDLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSSTVEHVRCFQPPIHQSLATTC", "length": 1253, "header": "tr|F1RQE9-1|F1RQE9_PIG Isoform 1 of Cytoplasmic FMR1-interacting protein OS=Sus scrofa OX=9823 GN=CYFIP2 PE=1 SV=4 CANONICAL=F1RQE9-1" }, "locus": { "chromosome": "16", "start_pos": 65979806, "end_pos": 65855357, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018567.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018567.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018067.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018067.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523290", "resource": "KEGG Pathway" }, { "id": "R-SSC-2029482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2029482", "resource": "Reactome", "description": "Regulation of actin dynamics for phagocytic cup formation" }, { "id": "R-SSC-4420097", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "resource": "Reactome", "description": "VEGFA-VEGFR2 Pathway" }, { "id": "R-SSC-5663213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663213", "resource": "Reactome", "description": "RHO GTPases Activate WASPs and WAVEs" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "regulation of actin filament polymerization", "id": "GO:0030833", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030833", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "cell projection assembly", "id": "GO:0030031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030031", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "positive regulation of neurotrophin TRK receptor signaling pathway", "id": "GO:0051388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051388", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "positive regulation of proteolysis", "id": "GO:0045862", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045862", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "dendrite extension", "id": "GO:0097484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097484", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "regulation of postsynapse assembly", "id": "GO:0150052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150052", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" }, { "name": "SCAR complex", "id": "GO:0031209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031209", "evidence": [ { "database": "UniProtKB", "id": "F1RQE9", "url": "https://www.uniprot.org/uniprotkb/F1RQE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, 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Inter-alpha-trypsin inhibitor heavy chain 2 OS=Sus scrofa OX=9823 GN=ITIH2 PE=3 SV=4 CANONICAL=F1RUM4-1" }, "locus": { "chromosome": "10", "start_pos": 63671189, "end_pos": 63635373, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012179.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012179.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011867.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011867.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 654, "start_aa": "Thr", "end_pos": 654, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr654", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEV5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1RUM4", "url": "https://www.uniprot.org/uniprotkb/F1RUM4" } ], "pmid": "" }, { "name": "hyaluronic acid binding", "id": "GO:0005540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005540", "evidence": [ { "database": "UniProtKB", "id": "F1RUM4", "url": "https://www.uniprot.org/uniprotkb/F1RUM4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1RUM4", "url": 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"length": 1222, "header": "tr|A0A5G2QF41-1|F1RSN3_PIG Computationally mapped isoform of 5-oxoprolinase, ATP-hydrolysing OS=Sus scrofa OX=9823 GN=OPLAH PE=1 SV=2 CANONICAL=F1RSN3-1" }, "locus": { "chromosome": "4", "start_pos": 639365, "end_pos": 630480, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086070.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086070.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062814.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062814.2" } ] } }, { "isoform_ac": "F1RSN3-1", "url": "https://www.uniprot.org/uniprotkb/F1RSN3/entry", "sequence": { "sequence": "MGVPEGRFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYMDAPTEGIRRILEQEGGMPLPRDQPLDTSRIASIRMGTTVATNALLERRGERLALLVTRGFRDLLHVGTQARQDLFDLAVPMPEMLYEEVLEVDERVVLYRGEPGAGTPVKGCTGDLLEVQQPVDLEALRGKLEGLLSRGIRSLAVVLMHSYTWAQHEQQVGTLARELGFAHVSLSSETMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKDVQVLFMRSDGGLVPVDSFSGSRAVLSGPAGGVVGYAATTYRVEGGHPVIGFDMGGTSTDVSRYAGEFEHVFESSTAGVTLQAPQLDINTVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSPEASRKALEAVATEVNSFLTNAPCPAPPLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGGAGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCALPYTPETFVQLDQRLSRLEEQCVDALRAQGFPRSQISTESFLHLRYQGTDCALMVSAHQHPATARSPRAGDFGAAFVERYMREFGFVIPERPVVVDDVRVRGTGRSGLRLEDVPNAQSGPPRVDKVTQCFFEGPICSPAPSTILVEPGCQAEVTETGDIRISVGAEAPSTVGAQLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFWPGQARPVFYVASRGHHADIGGITPGSMPPHSTALQQEGAVFLSFKLVQGGVFQEEAVTEALRAPGKIPGCSGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANAELAVRDMLRAFGSSRQARGLPLEVSADDHLDDGSPIRLRVQINPSQGSAVFDFSGTGPEVFGNLNAPRAITLSALIYCLRCLVGRDIPLNQGCLAPVRVVIPRGSILDPSPEAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNAHMGYYETVAGGAGAGPGWHGRSGVHSHMTNTRITDPEVLESRYPVILRRFELRRGSGGRGRFRGGDGVIRELLFREEALLSVLTERRAFQPYGLLGGEPGARGLNLLIRKDGRTVNLGGKTSVPVYPGDVFCLHTPGGGGYGDPEDPAPPLGSPSQPLAFPERGSVYEYRRAQEAV", "length": 1266, "header": "tr|F1RSN3-1|F1RSN3_PIG Isoform 1 of 5-oxoprolinase, ATP-hydrolysing OS=Sus scrofa OX=9823 GN=OPLAH PE=1 SV=5 CANONICAL=F1RSN3-1" }, "locus": { "chromosome": "4", "start_pos": 639365, "end_pos": 630480, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006491.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006491.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006320.5", "url": "https://www.ensembl.org/id/ENSSSCP00000006320.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QF41", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QF41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-174403", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174403", "resource": "Reactome", "description": "Glutathione synthesis and recycling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1RSN3", "url": "https://www.uniprot.org/uniprotkb/F1RSN3" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RSN3", "url": "https://www.uniprot.org/uniprotkb/F1RSN3" } ], "pmid": "" }, { "name": "5-oxoprolinase (ATP-hydrolyzing) activity", "id": "GO:0017168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017168", "evidence": [ { "database": "UniProtKB", "id": "F1RSN3", "url": "https://www.uniprot.org/uniprotkb/F1RSN3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RSN3", "url": "https://www.uniprot.org/uniprotkb/F1RSN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glutathione metabolic process", "id": "GO:0006749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006749", "evidence": [ { "database": "UniProtKB", "id": "F1RSN3", "url": "https://www.uniprot.org/uniprotkb/F1RSN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1084, "end_pos": 1086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 897, "end_pos": 899, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSN3" }, { "id": "PF01968", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01968" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Hydantoinase A/oxoprolinase", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 530, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": [] 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"TPMWAGGGGVGSPRRGLAPAPTDDLFARKLRQPSRPPLTPLTFEPRPARGPLLRSGSDAGEARPPTPASPRARAHSHEEASRPAVPPARCFSDPLALLGLPAEEPEPTFPPAPEPHWFAHYDVQSLLFDWAPRPRGQGGHAEAGSGTPASAQDQTAGSDLLLDAPGFVSELGGEGELGLGGPVSPPVPPALPNAAVSVLEEPQSRTSAYSLEHADLGAGYYRKYFYGKEHQNFFGLDEALGPVAVSLRREEKESSGGGTLHSYRIIVRTTQLRTLRGTISEDALPPGPPRGLSPRKLLEHVAPRLSLTCLRLGSASPKVPRTLLTLDEQVLSFQRKVGVLYCRAGQGSEEEMYNNQEAGPAFMQFLTLLGDVVRLKGFESYRAQLDTKTDSTGTHSLYTTYQDHEIMFHVSTMLPYTPNNQQQLLRKRHIGNDIVTIVFQEPGSKPFCPTTIRSHFQHVFLVVRAHAPCTPHTSYRVAVSRTQDTPAFGPALPPGGGPFPANADFRALLLAKALNGEQAAGHARQFHAMATRTRQQYLQDLATNEVTTTSLDSASRFGLPSLGGRRRAPPRGPGAELQAAGALVWGVRAAPGARGAAGAEVGGLDGSEVPCLLGISAETLVLVAPRDGRVVFNCACRDVLAWTFSEQQLDLYHGRGEAITLRLDGPPGQAVGEVVARLQLVSRGCETRELALPRDGQGRLGFEVDAEGFVTHVERFTFAETTGLRPGARLLRVCGQTLPSLGPEAAAQLLRSAPKVCVTVLPPDESGRPRRSFSELYALSLQEPSRRGAAEPVQEEAPAVALLPTTQQLLQVCLNDGSGPPGPADLAEERTEFLHSQNPPSPCSSLSDEAPVLPNTTPDLLLATTAKPAAPSAGRETPPTQDRPGSPGGCEDRDSPVPELRASFLPRTLSLRNSISKIMSEAGSETLEDEWQSISEIASTCNTILESLSREGQPIPESGDAKGTPKSDAESEPGSLSEKVSHLESLLRKLQEDLQKEKADRAALEEEVRSLRHNNRRLQAESESAAARLLLASKQLGSPTTDLA", 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S010-1", "uniprot_ac": "F1S010", "uniprot_id": "F1S010_PIG", "mass": { "chemical_mass": 20661.0, "monoisotopic_mass": 20661.0 }, "refseq": {}, "gene_names": [ { "name": "CYBC1", "type": "recommended", "evidence": [ { "id": "F1S010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S010" } ] } ], "protein_names": [ { "name": "Essential for reactive oxygen species protein", "type": "recommended", "evidence": [ { "id": "F1S010", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S010/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S010", "url": "https://www.uniprot.org/uniprotkb/F1S010" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYBC1", "url": "https://www.uniprot.org/uniprotkb/F1S010", "locus": { "chromosome": "12", "start_pos": 662513, "end_pos": 656347, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017127", "url": "https://www.ensembl.org/id/ENSSSCG00000017127" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017127", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017127", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522460", "url": "https://www.ncbi.nlm.nih.gov/gene/100522460", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WKLFYIT", "url": "https://omabrowser.org/oma/group/WKLFYIT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S010", "url": "https://www.orthodb.org/?gene=F1S010", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31837", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31837", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31837:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31837:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QFI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMX8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9P2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9P2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIM7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPY0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S010", "url": "https://www.uniprot.org/uniprotkb/F1S010", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S010-1", "url": "https://www.uniprot.org/uniprotkb/F1S010-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYMQVETRTSSCLHLKRAPGIRSWSLLVGIASIGLAAAYYSGDSLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 187, "header": "tr|F1S010-1|F1S010_PIG Isoform 1 of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFI7/entry", "sequence": { "sequence": "MYMQVETRTSSCLHLKRAPGIRSWSLLVGIASIGLAAAYYSGDSLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQGCCQAASSSVTGLQRPGGSPAAARKMTRETATTLSRPELVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 226, "header": "tr|A0A5G2QFI7-1|F1S010_PIG Computationally mapped isoform of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661747, "end_pos": 658554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090299.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090299.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062976.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062976.1" } ] } }, { "isoform_ac": "A0A5G2QHW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW0/entry", "sequence": { "sequence": "MVPVRMPTFPLSHAAPLLSAPGDPGGERRVRHVVRPCLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 180, "header": "tr|A0A5G2QHW0-1|F1S010_PIG Computationally mapped isoform of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661747, "end_pos": 659683, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073921.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073921.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063979.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063979.1" } ] } }, { "isoform_ac": "A0A5G2QMX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMX8/entry", "sequence": { "sequence": "LFPPASPVERGGSTFWDVHAGGDTHQLLPPSEKGSRHQVLVPVGWDPASFIPRARLGLCLQSGLKVPLPVLLVGVHPLWRLPYTSGEHGIASIGLAAAYYSGDSLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 247, "header": "tr|A0A5G2QMX8-1|A0A5G2QMX8_PIG Computationally mapped isoform of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661747, "end_pos": 658100, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088014.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088014.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066242.1" } ] } }, { "isoform_ac": "A0A5G2R9P2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9P2/entry", "sequence": { "sequence": "MYMQVETRTSSCLHLKRAPGIRSWSLLVDSLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 173, "header": "tr|A0A5G2R9P2-1|F1S010_PIG Computationally mapped isoform of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661747, "end_pos": 658554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088688.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088688.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073781.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073781.1" } ] } }, { "isoform_ac": "A0A5G2RIM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIM7/entry", "sequence": { "sequence": "MYMQVETRTSSCLHLKRAPGIRSWSLLVGIASIGLAAAYYSGDSLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRG", "length": 148, "header": "tr|A0A5G2RIM7-1|F1S010_PIG Computationally mapped isoform of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661302, "end_pos": 658554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088437.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088437.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071473.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071473.1" } ] } }, { "isoform_ac": "A0A8W4FPY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPY0/entry", "sequence": { "sequence": "LFPPASPVERGGSTFWDVHAGGDTHQLLPPSEKGSRHQVLVPVGWDPASFIPRARLGLCLQSGLKVPLPVLLVGVHPLWRLPYTSGEHGDCLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 234, "header": "tr|A0A8W4FPY0-1|F1S010_PIG Computationally mapped isoform of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661747, "end_pos": 658100, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093539.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093539.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081014.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081014.1" } ] } }, { "isoform_ac": "F1S010-1", "url": "https://www.uniprot.org/uniprotkb/F1S010/entry", "sequence": { "sequence": "MYMQVETRTSSCLHLKRAPGIRSWSLLVGIASIGLAAAYYSGDSLGWKLFYVSGCLFVAVQNLEDWQEAIFSKSTGKVVLKTSSLYRKLLTLCRAGHEQVVVQLSDIRDVSVEEEKVRYFGKGHVVVLRFATGFSHPLTQSAVMGHRGDVEAIARLITTFLELHRLESPAEPSQSSDSEADILGDHS", "length": 187, "header": "tr|F1S010-1|F1S010_PIG Isoform 1 of Essential for reactive oxygen species protein OS=Sus scrofa OX=9823 GN=CYBC1 PE=1 SV=1 CANONICAL=F1S010-1" }, "locus": { "chromosome": "12", "start_pos": 661747, "end_pos": 658554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018645.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018645.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018144.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018144.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFI7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7H9M3-1", "protein_name": "Essential for reactive oxygen species protein", "gene_name": "LOC100773571", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYMQVETRTSTRLHLTRAPGIRSWSLLVGILSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKSTGKVILKTFSLYKKLLTLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYTVVLRFATGFSHPLTQSAVMGRRSDVEAIAKLITSFLELHRLESPSERSQSSDSEADGPGDQS", "length": 187 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1AM90-1", "protein_name": "Essential for reactive oxygen species protein", "gene_name": "CYBC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MYMLIETRTSSLLHLTRSPGIRSWSVFVGIASIGLAAAYYSADSLAWKLFYMAGCFFVAAQNLEQWEEAVFDKNKGTVCLKTFNLYKKILTFSKGGSEQVVALLHEIRDVNVEEETVRYFGKGYLVVLRFVTGFSHPLTQSAVLGCRSDVEAVAKLVISFLELDRAESQDVYESSETEASDADEPQDEY", "length": 189 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3SZM3-1", "protein_name": "Cytochrome b-245 chaperone 1", "gene_name": "CYBC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYMQVETRTSSRLHLKRAPGIRSWSLLVGILSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKSTGKVVLKTFSLYRKLLTLCRAGHDQVVVLLSDIRDVNVEEEKVRYFGKGYVVVLRFATGFSHPLTQSAVMGHRSDVEVIAKLITTFLELHRLESPVELSQSSDSEADSPGDQS", "length": 187 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3TYS2-1", "protein_name": "Cytochrome b-245 chaperone 1", "gene_name": "Cybc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYMQVETRTSTRLHLKRAPGIRSWSLLVGILSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKNTGKVILKTFSLYKKLLTLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDVEAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS", "length": 187 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AYA6-1", "protein_name": "Cytochrome b-245 chaperone 1", "gene_name": "Cybc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYMQVETRTSTRLHLKRAPGIRSWSLLVGILSTGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFNKSTGKVILKTFSLYKKLLTLLRAGHDQVVVLLKDIQDVNVEEEKVRYFGKGYMVVLRFATGFSHPLTQSAVMGRRSDVEAIAKLITSFLELHRLESPSERSQSSDSEPDGPGGQS", "length": 187 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DGA7-1", "protein_name": "Cytochrome b-245 chaperone 1 homolog", "gene_name": "cybc1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGYMIVEKHTSELLHLKRSPGIRSWSILVGIASVGLAAAYYSSDSILWKMFYVTGCFFVALQNMEEWEEAVFNKSKNEIELKTFSLYTMLLTLWKRGHEKVLLDLRHLRDVSVQEERVRYLGKGYLVVLRLATGFSYPLTQSATLGSRSDVEALAALLKRFLGLEELQQRLADDDYPDDDDGIEDLGLGDSSDSQDDPDGDDDEEH", "length": 206 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BQA9-1", "protein_name": "Cytochrome b-245 chaperone 1", "gene_name": "CYBC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYLQVETRTSSRLHLKRAPGIRSWSLLVGILSIGLAAAYYSGDSLGWKLFYVTGCLFVAVQNLEDWEEAIFDKSTGKVVLKTFSLYKKLLTLFRAGHDQVVVLLHDVRDVSVEEEKVRYFGKGYMVVLRLATGFSHPLTQSAVMGHRSDVEAIAKLITSFLELHCLESPTELSQSSDSEAGDPASQS", "length": 187 }, "evidence": [ { "id": "F1S010", "url": "https://omabrowser.org/oma/group/F1S010/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1S010", "url": "https://www.uniprot.org/uniprotkb/F1S010" } ], "pmid": "" }, { "name": "respiratory burst after phagocytosis", "id": "GO:0045728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045728", "evidence": [ { "database": "UniProtKB", "id": "F1S010", "url": "https://www.uniprot.org/uniprotkb/F1S010" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1S010", "url": "https://www.uniprot.org/uniprotkb/F1S010" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RTR0-1", "uniprot_ac": "F1RTR0", "uniprot_id": "F1RTR0_PIG", "mass": { "chemical_mass": 39060.0, "monoisotopic_mass": 39060.0 }, "refseq": {}, "gene_names": [ { "name": "KLF8", "type": "recommended", "evidence": [ { "id": "F1RTR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ] } ], "protein_names": [ { "name": "KLF transcription factor 8", "type": "synonym", "evidence": [ { "id": "F1RTR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTR0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLF8", "url": "https://www.uniprot.org/uniprotkb/F1RTR0", "locus": { "chromosome": "X", "start_pos": 48748546, "end_pos": 48663361, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012352", "url": "https://www.ensembl.org/id/ENSSSCG00000012352" } ] } } ], "crossref": [ { "id": "F1RTR0", "url": "https://alphafold.ebi.ac.uk/entry/F1RTR0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012352", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012352", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KMTSPPF", "url": "https://omabrowser.org/oma/group/KMTSPPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23235:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23235:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4I2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTR0-1", "url": "https://www.uniprot.org/uniprotkb/F1RTR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTR2", "url": "https://www.uniprot.org/uniprotkb/F1RTR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTR2-1", "url": "https://www.uniprot.org/uniprotkb/F1RTR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDMDQLINNLEVQLNSETGSMHVFKQVTGSVQIRDSLKTTGRGDMTSPPLLDINPMENPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPEPVSQTLVESTSTSNTGTSANIPTVLTSGSILASSQGTGGQQILHVIHTIPSVSLPNKMSGLKAIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEENAIESGSSALQGIQGLQQEPAVMTQMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCADCNRSFSRSDHLSLHRRRHDTM", "length": 359, "header": "tr|F1RTR0-1|F1RTR0_PIG Isoform 1 of KLF transcription factor 8 OS=Sus scrofa OX=9823 GN=KLF8 PE=4 SV=3 CANONICAL=F1RTR0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG89-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG89/entry", "sequence": { "sequence": "LDMDQLINNLEVQLNSETGSMHVFKQVTGSVQIRDSLKTTGRGDMTSPPLLDINPMENPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPEPVSQTLVESTSTSNTGTSANIPTVLTSGSILASSQGTGGQQILHVIHTIPSVSLPNKMSGLKAIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEENAIESGSSALQGIQGLQQEPAVMTQMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCADCNRSFSRSDHLSLHRRRHDTM", "length": 358, "header": "tr|A0A5G2QG89-1|F1RTR0_PIG Computationally mapped isoform of KLF transcription factor 8 OS=Sus scrofa OX=9823 GN=KLF8 PE=4 SV=1 CANONICAL=F1RTR0-1" }, "locus": { "chromosome": "X", "start_pos": 48746141, "end_pos": 48686761, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077272.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077272.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062796.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062796.1" } ] } }, { "isoform_ac": "A0A5G2QGG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGG7/entry", "sequence": { "sequence": "MSLPGDRRISGHFRSPQLVTWAVTGSVQIRDSLKTTGRGDMTSPPLLDINPMENPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPEPVSQTLVESTSTSNTGTSANIPTVLTSGSILASSQGTGGQQILHVIHTIPSVSLPNKMSGLKAIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEENAIESGSSALQGIQGLQQERKAL", "length": 252, "header": "tr|A0A5G2QGG7-1|F1RTR0_PIG Computationally mapped isoform of KLF transcription factor 8 OS=Sus scrofa OX=9823 GN=KLF8 PE=4 SV=1 CANONICAL=F1RTR0-1" }, "locus": { "chromosome": "X", "start_pos": 48745975, "end_pos": 48663899, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070182.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070182.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061091.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061091.1" } ] } }, { "isoform_ac": "A0A5G2R4I2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I2/entry", "sequence": { "sequence": "MGAVPAFLISQRLKVNDICSRSSRIIDMDQLINNLEVQLNSETGSMHVFKQVTGSVQIRDSLKTTGRGDMTSPPLLDINPMENPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPEPVSQTLVESTSTSNTGTSANIPTVLTSGSILASSQGTGGQQILHVIHTIPSVSLPNKMSGLKAIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEENAIESGSSALQGIQGLQQEPAVMTQMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPSFWGGIGTAH", "length": 367, "header": "tr|A0A5G2R4I2-1|F1RTR0_PIG Computationally mapped isoform of KLF transcription factor 8 OS=Sus scrofa OX=9823 GN=KLF8 PE=4 SV=2 CANONICAL=F1RTR0-1" }, "locus": { "chromosome": "X", "start_pos": 48746301, "end_pos": 48663958, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073785.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073785.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065472.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065472.2" } ] } }, { "isoform_ac": "F1RTR0-1", "url": "https://www.uniprot.org/uniprotkb/F1RTR0/entry", "sequence": { "sequence": "MGDMDQLINNLEVQLNSETGSMHVFKQVTGSVQIRDSLKTTGRGDMTSPPLLDINPMENPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPEPVSQTLVESTSTSNTGTSANIPTVLTSGSILASSQGTGGQQILHVIHTIPSVSLPNKMSGLKAIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEENAIESGSSALQGIQGLQQEPAVMTQMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCADCNRSFSRSDHLSLHRRRHDTM", "length": 359, "header": "tr|F1RTR0-1|F1RTR0_PIG Isoform 1 of KLF transcription factor 8 OS=Sus scrofa OX=9823 GN=KLF8 PE=4 SV=3 CANONICAL=F1RTR0-1" }, "locus": { "chromosome": "X", "start_pos": 48746141, "end_pos": 48663958, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013509.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013509.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013148.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013148.3" } ] } }, { "isoform_ac": "F1RTR2-1", "url": "https://www.uniprot.org/uniprotkb/F1RTR2/entry", "sequence": { "sequence": "MGDMDQLINNLEVQLNSETGSMHVFKQVTGSVQIRDSLKTTGRGDMTSPPLLDINPMENPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPEPVSQTLVESTSTSNTGTSANIPTVLTSGSILASSQGTGGQQILHVIHTIPSVSLPNKMSGLKAIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEENAIESGSSALQGIQGLQQERKAL", "length": 257, "header": "tr|F1RTR2-1|F1RTR2_PIG Computationally mapped isoform of KLF transcription factor 8 OS=Sus scrofa OX=9823 GN=KLF8 PE=4 SV=3 CANONICAL=F1RTR0-1" }, "locus": { "chromosome": "X", "start_pos": 48745975, "end_pos": 48663958, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013507.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013507.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013146.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013146.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG89", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG89" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YJL9-1", "protein_name": "KLF transcription factor 8", "gene_name": "KLF8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPRMEPSVLLVPSKRGLWIWSVIQSSTGPCSKMVGTDPLCQAPYGCMNSLAQLDCGLPTHGCFHRASSCPILPFLCPTQPSSCQGRVLLGLKHDGAVPWSSWVKATEGTLEDHHVFRRTGQSQGSAVFWQAGGSGRGKAAPRMSSSSLLAEAPLEPPVLLSDIKTEPPEELLASDCSQPQAEPVDLSLNKSKAPPPPPPVQSSPLLVAPPVPASTISIASSGLGTTSAIPAVLSPGSILASSQGSGGQQILHVIHTIPSVNLPSKMGNLQTIPVVVQSLPVVYTTMPTDGVTAITVPLIGGDGKNTGSVKMDPGAMYPMDMPSDSEDSASESGPAPFQDLQRESATPRLPRSDSPDLKKRRIHQCDFEGCNKVYTKSSHLKAHRRIHTGEKPYKCTWEGCTWKFARSDELTRHFRKHTGIKPFRCSDCDRSFSRSDHLALHRRRHIMM", "length": 448 }, "evidence": [ { "id": "F1RTR0", "url": "https://omabrowser.org/oma/group/F1RTR0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9T3N2-1", "protein_name": "KLF transcription factor 8", "gene_name": "KLF8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGDMDQLINNWEVQLNSEGGSMHMFKQVTGPVQIRDSLKRADRGNMTSPPLLDANSMKNPALLNDIKIEPPEELLANDFNLPQVEPVDLSFHKPKAPLQPASMLQSPIRSPKPQPASQTLVVSTSTSDTGSSASIRTVLTPGSILASSQGTGGHQILHVIHTIPSVNLPNKMGSLKAIPVVVQSLPMVYTTLPADGNPAAITVPLIGGDGKNVGSVKVEPTSLSPLEIPSDNEENAIESGSLQGIQGLQQEPAAMTQMQEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRHDTV", "length": 356 }, "evidence": [ { "id": "F1RTR0", "url": "https://omabrowser.org/oma/group/F1RTR0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0M341-1", "protein_name": "KLF transcription factor 8", "gene_name": "Klf8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKFINNMDVRIKTESDSMEVFKQVTGPVPTRDPSVRGDRRNMTSPPFLAASPMENPALFNDIKIEPPEELLESDFNTPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPPTAPQAIMVSTSADTVTSAAIPTVLTPGSILASSQGTGGQPILHVIHTIPSVSLPNKMSGLKTIPLVVQSLPMVYTSLPADGSPAAITVPLIGGDGKSAGSVKVDPASMCPLEFPSDSDESAIESGSSALQSLQGFHHEPATMVHMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRHDTM", "length": 355 }, "evidence": [ { "id": "F1RTR0", "url": "https://omabrowser.org/oma/group/F1RTR0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HWU8-1", "protein_name": "Krueppel-like factor 8", "gene_name": "Klf8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDRFINNLEAQLNSESDSMQVYKQVTGPVQTRNRSVTADRSNMTSPLLDASSMENPALFNDIKIEPPEELLASDFNLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPPSAAQAIVVSTSSDTGTSATIPTVLTPGSILASSQGTGGQPILHVIHTIPSVGLPNKMGGLKTIPLVVQSLPMVYTSLPADGSPAAITVPLIGGDGKNAGSVKVDPTSMSPLEFPSDSDESAIESGSSALQGLHGLHQEPATMAQMQGEDSLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRHDTM", "length": 354 }, "evidence": [ { "id": "F1RTR0", "url": "https://omabrowser.org/oma/group/F1RTR0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95600-1", "protein_name": "Krueppel-like factor 8", "gene_name": "KLF8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVDMDKLINNLEVQLNSEGGSMQVFKQVTASVRNRDPPEIEYRSNMTSPTLLDANPMENPALFNDIKIEPPEELLASDFSLPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPQSSPQTLVVSTSTSDMSTSANIPTVLTPGSVLTSSQSTGSQQILHVIHTIPSVSLPNKMGGLKTIPVVVQSLPMVYTTLPADGGPAAITVPLIGGDGKNAGSVKVDPTSMSPLEIPSDSEESTIESGSSALQSLQGLQQEPAAMAQMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRHDTM", "length": 359 }, "evidence": [ { "id": "F1RTR0", "url": "https://omabrowser.org/oma/group/F1RTR0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BLM0-1", "protein_name": "Krueppel-like factor 8", "gene_name": "Klf8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDKFIDNMDVRIKSESGSMQVFKQVTGPVPTRDPSARADRRNMTSPSFLAASPMENPALFNDIKIEPPEELLESDFNMPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPPTAPQAIMVPTSADTVTSAAIPTVLTPGSILASSQGTGGQPILHVIHTIPSVSLPNKMSGLKTIPLVVQSLPMVYTSLPTDGSPAAITVPLIGGDGKSAGSVKVDPASMCPLEFPSDSDESAIESGSSALQSLQGFHHEPATMVHMQGEESLDLKRRRIHQCDFAGCSKVYTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRRRHDTM", "length": 355 }, "evidence": [ { "id": "F1RTR0", "url": "https://omabrowser.org/oma/group/F1RTR0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RTR0", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RTR0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 359, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RTR0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RTR0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RTR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTR0" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 274, "end_pos": 303, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 340, "end_pos": 342 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RS13-1", "uniprot_ac": "F1RS13", "uniprot_id": "F1RS13_PIG", "mass": { "chemical_mass": 23159.0, "monoisotopic_mass": 23159.0 }, "refseq": {}, "gene_names": [ { "name": "PTRH1", "type": "recommended", "evidence": [ { "id": "F1RS13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS13" } ] } ], "protein_names": [ { "name": "peptidyl-tRNA hydrolase", "type": "recommended", "evidence": [ { "id": "F1RS13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS13/entry#names_and_taxonomy" } ] }, { "name": "3.1.1.29", "type": "synonym", "evidence": [ { "id": "F1RS13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS13/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Peptidyl-tRNA hydrolase that cleaves nascent chains-tRNAs that are not stably fixed in the P-site of 60S ribosome-nascent chain complexes. Acts downstream of the ribosome-associated quality control (RQC) pathway to release non-ubiquitinated nascent chains from 60S and 80S ribosome-nascent chain complexes. Does not act on ubiquitinated nascent chains, which are cleaved by ANKZF1 for degradation.", "evidence": [ { "database": "UniProtKB", "id": "F1RS13", "url": "https://www.uniprot.org/uniprotkb/F1RS13#function" }, { "database": "UniProtKB", "id": "ARBA00053438", "url": "https://www.uniprot.org/uniprotkb/ARBA00053438#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RS13", "url": "https://www.uniprot.org/uniprotkb/F1RS13" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTRH1", "url": "https://www.uniprot.org/uniprotkb/F1RS13", "locus": { "chromosome": "1", "start_pos": 268213687, "end_pos": 268215523, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005615", "url": "https://www.ensembl.org/id/ENSSSCG00000005615" } ] } } ], "crossref": [ { "id": "F1RS13", "url": "https://alphafold.ebi.ac.uk/entry/F1RS13", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005615", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005615", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00462", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00462", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PNTYMNL", "url": "https://omabrowser.org/oma/group/PNTYMNL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR17224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17224:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17224:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "54448", "url": "https://www.rhea-db.org/rhea/54448", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QGI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS13", "url": "https://www.uniprot.org/uniprotkb/F1RS13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS13-1", "url": "https://www.uniprot.org/uniprotkb/F1RS13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPPRLSREGLWLSRAMSRCVLEPRPPGKRWLVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWARDARCAADLALASLGDAQVVLLRPRRLMNNNGRSVARAAELFGLTAEEVYLVHDELDKPLGKLALKLGGSARGHNGVRSCISCLNSNAMPRLRVGIGRPTHPDTVQAYVLGRFSLAEQELLPPLLERATDLLLDHIRERSQGPTLGP", "length": 214, "header": "tr|F1RS13-1|F1RS13_PIG Isoform 1 of peptidyl-tRNA hydrolase OS=Sus scrofa OX=9823 GN=PTRH1 PE=3 SV=2 CANONICAL=F1RS13-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI6/entry", "sequence": { "sequence": "MPPPRLSREGLWLSRAMSRCVLEPRPPGKRWLVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWARDARCAADLALASLGDAQVVLLRPRRLMNNNGRSVARAAELFGLTAEEVYLVHDELDKPLGKLALKLGGSARPCHGCGWASGARHTQTQFRPTCWAASPSPSRSCCLHCWSVPPTC", "length": 183, "header": "tr|A0A5G2QGI6-1|F1RS13_PIG Computationally mapped isoform of peptidyl-tRNA hydrolase OS=Sus scrofa OX=9823 GN=PTRH1 PE=3 SV=1 CANONICAL=F1RS13-1" }, "locus": { "chromosome": "1", "start_pos": 268215497, "end_pos": 268214036, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073852.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073852.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063409.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063409.1" } ] } }, { "isoform_ac": "F1RS13-1", "url": "https://www.uniprot.org/uniprotkb/F1RS13/entry", "sequence": { "sequence": "MPPPRLSREGLWLSRAMSRCVLEPRPPGKRWLVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWARDARCAADLALASLGDAQVVLLRPRRLMNNNGRSVARAAELFGLTAEEVYLVHDELDKPLGKLALKLGGSARGHNGVRSCISCLNSNAMPRLRVGIGRPTHPDTVQAYVLGRFSLAEQELLPPLLERATDLLLDHIRERSQGPTLGP", "length": 214, "header": "tr|F1RS13-1|F1RS13_PIG Isoform 1 of peptidyl-tRNA hydrolase OS=Sus scrofa OX=9823 GN=PTRH1 PE=3 SV=2 CANONICAL=F1RS13-1" }, "locus": { "chromosome": "1", "start_pos": 268215497, "end_pos": 268213989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006175.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006175.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006016.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006016.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1M8A9-1", "protein_name": "peptidyl-tRNA hydrolase", "gene_name": "Ptrh1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAGVRMLKSGLFCPGMRRSWTLSRQVSEARFPGKRWLVAGLGNPGMPGTRHSVGMAVLGQIAQRLGVAENWARDSRCAADLALAPFGDAQLVLLRPRRLMNVNGRSVAKAAELFGLSAEEIYLVHDELDKPLGKLALKLGGSARGHNGVRSCISCLNSNHRLLLQVVHVVLVFTLLPSKLFLQRHVLLCELFFLQPELLQGTQLDSCPFGATRLVSCPRGP", "length": 222 }, "evidence": [ { "id": "F1RS13", "url": "https://omabrowser.org/oma/group/F1RS13/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86Y79-1", "protein_name": "Peptidyl-tRNA hydrolase", "gene_name": "PTRH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPGGFLGAGQRLSRAMSRCVLEPRPPGKRWMVAGLGNPGLPGTRHSVGMAVLGQLARRLGVAESWTRDRHCAADLALAPLGDAQLVLLRPRRLMNANGRSVARAAELFGLTAEEVYLVHDELDKPLGRLALKLGGSARGHNGVRSCISCLNSNAMPRLRVGIGRPAHPEAVQAHVLGCFSPAEQELLPLLLDRATDLILDHIRERSQGPSLGP", "length": 214 }, "evidence": [ { "id": "F1RS13", "url": "https://omabrowser.org/oma/group/F1RS13/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BW00-1", "protein_name": "Probable peptidyl-tRNA hydrolase", "gene_name": "Ptrh1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRRSWALSRQVSEARFPGKRWLVAGLGNHGMPGTRHSVGMAVLGQIARRLGVAENWTRDSRCAADLALAPLGDAQLVLLRPRRLMNVNGRSVARAAELFGLTAEEIYLVHDELDKPLGKLALKLGGSARGHNGVRSCISCLNSNAMPRLLVGIGRPTHPNMVENHVLGCFSPEEQELLSPLMDQATDLLLDHIRARSQGPLSGL", "length": 204 }, "evidence": [ { "id": "F1RS13", "url": "https://omabrowser.org/oma/group/F1RS13/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LF14-1", "protein_name": "Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic", "gene_name": "CRS2B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLCPTYTPSVYHFQTQKPVFRKQRFRVCSSTSGGEDDRFKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV", "length": 240 }, "evidence": [ { "id": "F1RS13", "url": "https://omabrowser.org/oma/group/F1RS13/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "peptidyl-tRNA hydrolase activity", "id": "GO:0004045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004045", "evidence": [ { "database": "UniProtKB", "id": "F1RS13", "url": "https://www.uniprot.org/uniprotkb/F1RS13" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1RS13", "url": "https://www.uniprot.org/uniprotkb/F1RS13" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "F1RS13", "url": "https://www.uniprot.org/uniprotkb/F1RS13" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "54448", "name": "", "equation": "an N-acyl-L-alpha-aminoacyl-tRNA + H2O = an N-acyl-L-amino acid + a tRNA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54448", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54448" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RS13-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 214, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RS13-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RS13" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPR6-1", "uniprot_ac": "F1RPR6", "uniprot_id": "F1RPR6_PIG", "mass": { "chemical_mass": 43309.0, "monoisotopic_mass": 43309.0 }, "refseq": { "ac": "XP_020930713", "name": "RNA-binding motif, single-stranded-interacting protein 1 isoform X12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930713" }, "gene_names": [ { "name": "RBMS1", "type": "recommended", "evidence": [ { "id": "F1RPR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ] }, { "name": "RBMS1", "type": "synonym", "evidence": [ { "id": "XP_020930713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930713" } ] } ], "protein_names": [ { "name": "RNA binding motif single stranded interacting protein 1", "type": "synonym", "evidence": [ { "id": "F1RPR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPR6/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif, single-stranded-interacting protein 1 isoform X12", "type": "synonym", "evidence": [ { "id": "XP_020930713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930713" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBMS1", "url": "https://www.uniprot.org/uniprotkb/F1RPR6", "locus": { "chromosome": "15", "start_pos": 67194072, "end_pos": 67409413, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015888", "url": "https://www.ensembl.org/id/ENSSSCG00000015888" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015888", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015888", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12470", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12470", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525434", "url": "https://www.ncbi.nlm.nih.gov/gene/100525434", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TMEHTMS", "url": "https://omabrowser.org/oma/group/TMEHTMS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930713", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930713", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AS23", "url": "https://www.uniprot.org/uniprotkb/A0A287AS23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AS23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEV5", "url": "https://www.uniprot.org/uniprotkb/A0A287BEV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEV5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0V675", "url": "https://www.uniprot.org/uniprotkb/A0A8D0V675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0V675-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0V675-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7Q8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPR6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIFPSSSGNPGGSSSCRTPYRKQQSLVPAPPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 401, "header": "tr|F1RPR6-1|F1RPR6_PIG Isoform 1 of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=3 CANONICAL=F1RPR6-1" }, "isoforms": [ { "isoform_ac": "A0A287AS23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AS23/entry", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAPPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEVGTDRPVAILGMSSFRNGLD", "length": 398, "header": "tr|A0A287AS23-1|A0A287AS23_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=1 CANONICAL=F1RPR6-1" }, "locus": { "chromosome": "15", "start_pos": 67408941, "end_pos": 67197601, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047553.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047553.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046761.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046761.1" } ] } }, { "isoform_ac": "A0A287BEV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEV5/entry", "sequence": { "sequence": "MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVAKETRESKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 386, "header": "tr|A0A287BEV5-1|A0A287BEV5_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=3 CANONICAL=F1RPR6-1" }, "locus": { "chromosome": "15", "start_pos": 67285993, "end_pos": 67196302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065599.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065599.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054862.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054862.3" } ] } }, { "isoform_ac": "A0A5G2QGY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY5/entry", "sequence": { "sequence": "MIFPSSSGNPGGSSSCRTPYRKQQSLVPAPPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLILSFTIQYCYKPNDHSDFHYTLYRISCICLPGAKSFLDATSTIYPPAPRCRVNSLDGAHHVTTARIYDQPAGPADESSVTRQHRNIHARHVRYARGLFATVHTCADGSGSCGGGEWSAAGGCRDV", "length": 375, "header": "tr|A0A5G2QGY5-1|F1RPR6_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=1 CANONICAL=F1RPR6-1" }, "locus": { "chromosome": "15", "start_pos": 67320621, "end_pos": 67196339, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086440.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086440.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064038.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064038.1" } ] } }, { "isoform_ac": "A0A8D0V675-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0V675/entry", "sequence": { "sequence": "MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 373, "header": "tr|A0A8D0V675-1|F1RPR6_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=1 CANONICAL=F1RPR6-1" }, "locus": { "chromosome": "15", "start_pos": 67285993, "end_pos": 67196302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083083.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083083.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061639.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061639.1" } ] } }, { "isoform_ac": "A0A8W4F7Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7Q8/entry", "sequence": { "sequence": "FLRYKQSLVPAPPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 386, "header": "tr|A0A8W4F7Q8-1|F1RPR6_PIG Computationally mapped isoform of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=1 CANONICAL=F1RPR6-1" }, "locus": { "chromosome": "15", "start_pos": 67286176, "end_pos": 67196302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095620.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095620.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075279.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075279.1" } ] } }, { "isoform_ac": "F1RPR6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPR6/entry", "sequence": { "sequence": "MIFPSSSGNPGGSSSCRTPYRKQQSLVPAPPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 401, "header": "tr|F1RPR6-1|F1RPR6_PIG Isoform 1 of RNA binding motif single stranded interacting protein 1 OS=Sus scrofa OX=9823 GN=RBMS1 PE=4 SV=3 CANONICAL=F1RPR6-1" }, "locus": { "chromosome": "15", "start_pos": 67320621, "end_pos": 67196302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017300.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017300.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016837.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016837.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGY5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7G6P3-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1 isoform X1", "gene_name": "Rbms1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAALHNGFYPSPYSIATNRMISQTSLTPYIASPVSTYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 422 }, "evidence": [ { "id": "F1RPR6", "url": "https://omabrowser.org/oma/group/F1RPR6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P29558-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "RBMS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK", "length": 406 }, "evidence": [ { "id": "F1RPR6", "url": "https://omabrowser.org/oma/group/F1RPR6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3ZBP3-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "RBMS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVTVETSNDHSPYTFQPNK", "length": 403 }, "evidence": [ { "id": "F1RPR6", "url": "https://omabrowser.org/oma/group/F1RPR6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5PQP1-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "Rbms1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTATVPVEEASGQQQVTVETSNDHSPYTFPPNK", "length": 403 }, "evidence": [ { "id": "F1RPR6", "url": "https://omabrowser.org/oma/group/F1RPR6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91W59-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 1", "gene_name": "Rbms1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFPPNK", "length": 403 }, "evidence": [ { "id": "F1RPR6", "url": "https://omabrowser.org/oma/group/F1RPR6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RPR6", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPR6" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 133, "start_aa": "Thr", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 44, "end_pos": 46 }, { "start_pos": 45, "end_pos": 47 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"categories": [ "Protein Classification" ] }, { "id": "IPR051937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A5D2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5D2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5D2-1", 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"MSEPGDLSQAIVEEGGPEQETTTPENGVVKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAVCEESSARPGGESLQDQESVHLQLSSFPSLQEDDKSRKDDSEREKEKDKNKDKTSEKPKIRMLSKDCSQEYTDSTGIDLHEFLINTLKNNSRDRMILLKMEQEIIDFIGDNKYRMLVHRVAAYFGLDHNVDQTGKSVIINKTGNTRIPEQRFCDHLKDEKGEESQKRFILKRDNSSIDKEDPQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENSRLLEDSNICSETYKKRQLFRGNRDSSGRTSGSRQSSSENELKWSDHQRAWSSTDSDSSNRNLKPAMTKTASFGGITVLTRGDSTSSTRSAGKLSKAGSESSSSAGSSGSLSRPHPPLQTTPLVSGVAAGSPGCVSYSENGMGGQVAPSSTSYILLPLEAATGIPPGSILLNPHTGQPFVNPDGSPAIYNPPASQQPLRSTMVGQSQQQPQQQPSPPQQQVQPPQPQMAGPLVTQREDVATQFGQMNLSRQSSGETAEPPAGPVYPPSLLPQPTQQPSYVITSTGQQLPTGGFSGSGPPISQQVLQPPPSPQGFVQQPPAAQMPVYYYPSGQYPTSTAQQFRPVASIQFSAQRGQQMPQTAQQAGYQPVLSGQQGFQSLMGVQQPPQSQGVMSSQQGTPVQSVMVSYPTMSNYQVPMTQGSQGLPQQSYQQPIMLPNQAGQGSLPATGMPVYCNVTPPTPQNNLRLIGPHCPSSTVPVMSASCRTNCANMSNAGWQVKF", "length": 798, "header": "tr|F1RRD5-1|F1RRD5_PIG Isoform 1 of cAMP regulated phosphoprotein 21 OS=Sus scrofa OX=9823 GN=ARPP21 PE=1 SV=4 CANONICAL=F1RRD5-1" }, "isoforms": [ { "isoform_ac": 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regulated phosphoprotein 21 OS=Sus scrofa OX=9823 GN=ARPP21 PE=1 SV=2 CANONICAL=F1RRD5-1" }, "locus": { "chromosome": "13", "start_pos": 21087900, "end_pos": 20979253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057643.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057643.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038976.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038976.2" } ] } }, { "isoform_ac": "A0A5G2QHG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHG2/entry", "sequence": { "sequence": "MSEPGDLSQAIVEEGGPEQETTTPENGVVKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAVCEESSARPGGESLQDQESVHLQLSSFPSLQEDDKSRKDDSEREKEKDKNKDKTSEKPKIRMLSKDCSQEYTDSTGIDLHEFLINTLKNNSRDRMILLKMEQEIIDFIGDNNNHYKKFPQMSPIRGCLSIVWQLTLGWITTWIRQGNLLSSTRLATQECKPHLHIYLAFSFSLVDSFIRTLYKIQSKWHLKCAVLSISCSYQQ", "length": 273, "header": "tr|A0A5G2QHG2-1|F1RRD5_PIG Computationally mapped isoform of cAMP regulated phosphoprotein 21 OS=Sus scrofa OX=9823 GN=ARPP21 PE=1 SV=1 CANONICAL=F1RRD5-1" }, "locus": { "chromosome": "13", "start_pos": 20988511, "end_pos": 20979253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089092.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089092.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063789.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063789.1" } ] } }, { "isoform_ac": "A0A5G2QIS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIS1/entry", "sequence": { "sequence": "MSEPGDLSQAIVEEGGPEQETTTPENGVVKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAVCEESSARPGGESLQDQTL", "length": 89, "header": "tr|A0A5G2QIS1-1|F1RRD5_PIG Computationally mapped isoform of cAMP regulated phosphoprotein 21 OS=Sus scrofa OX=9823 GN=ARPP21 PE=1 SV=1 CANONICAL=F1RRD5-1" }, "locus": { "chromosome": "13", "start_pos": 20981521, "end_pos": 20979253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096012.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096012.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077287.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077287.1" } ] } }, { "isoform_ac": "F1RRD5-1", "url": "https://www.uniprot.org/uniprotkb/F1RRD5/entry", "sequence": { "sequence": "MSEPGDLSQAIVEEGGPEQETTTPENGVVKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAVCEESSARPGGESLQDQESVHLQLSSFPSLQEDDKSRKDDSEREKEKDKNKDKTSEKPKIRMLSKDCSQEYTDSTGIDLHEFLINTLKNNSRDRMILLKMEQEIIDFIGDNKYRMLVHRVAAYFGLDHNVDQTGKSVIINKTGNTRIPEQRFCDHLKDEKGEESQKRFILKRDNSSIDKEDPQQNRMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENSRLLEDSNICSETYKKRQLFRGNRDSSGRTSGSRQSSSENELKWSDHQRAWSSTDSDSSNRNLKPAMTKTASFGGITVLTRGDSTSSTRSAGKLSKAGSESSSSAGSSGSLSRPHPPLQTTPLVSGVAAGSPGCVSYSENGMGGQVAPSSTSYILLPLEAATGIPPGSILLNPHTGQPFVNPDGSPAIYNPPASQQPLRSTMVGQSQQQPQQQPSPPQQQVQPPQPQMAGPLVTQREDVATQFGQMNLSRQSSGETAEPPAGPVYPPSLLPQPTQQPSYVITSTGQQLPTGGFSGSGPPISQQVLQPPPSPQGFVQQPPAAQMPVYYYPSGQYPTSTAQQFRPVASIQFSAQRGQQMPQTAQQAGYQPVLSGQQGFQSLMGVQQPPQSQGVMSSQQGTPVQSVMVSYPTMSNYQVPMTQGSQGLPQQSYQQPIMLPNQAGQGSLPATGMPVYCNVTPPTPQNNLRLIGPHCPSSTVPVMSASCRTNCANMSNAGWQVKF", "length": 798, "header": "tr|F1RRD5-1|F1RRD5_PIG Isoform 1 of cAMP regulated phosphoprotein 21 OS=Sus scrofa OX=9823 GN=ARPP21 PE=1 SV=4 CANONICAL=F1RRD5-1" }, "locus": { "chromosome": "13", "start_pos": 21087900, "end_pos": 20979253, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012305.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012305.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011986.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011986.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 755, "start_aa": "Thr", "end_pos": 755, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr755", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 758, "start_aa": "Thr", "end_pos": 758, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr758", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1RRD5", "url": "https://www.uniprot.org/uniprotkb/F1RRD5" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1RRD5", "url": "https://www.uniprot.org/uniprotkb/F1RRD5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RRD5", "url": "https://www.uniprot.org/uniprotkb/F1RRD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 546, "end_pos": 548, "annotation": "n_glycosylation_sequon" }, { "start_pos": 753, "end_pos": 755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 788, "end_pos": 790, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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{ "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S3A1-1", "uniprot_ac": "F1S3A1", "uniprot_id": "F1S3A1_PIG", "mass": { "chemical_mass": 142710.0, "monoisotopic_mass": 142710.0 }, "refseq": { "ac": "XP_013850328", "name": "cadherin-related family member 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850328" }, "gene_names": [ { "name": "CDHR2", "type": "recommended", "evidence": [ { "id": "F1S3A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ] }, { "name": "CDHR2", "type": "synonym", "evidence": [ { "id": "XP_013850328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850328" } ] } ], "protein_names": [ { "name": "Cadherin-related family member 2", "type": "recommended", "evidence": [ { "id": "F1S3A1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3A1/entry#names_and_taxonomy" } ] }, { "name": "cadherin-related family member 2", "type": "synonym", "evidence": [ { "id": "XP_013850328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850328" } ] } ], "function": [ { "annotation": "Intermicrovillar adhesion molecule that forms, via its extracellular domain, calcium-dependent heterophilic complexes with CDHR5 on adjacent microvilli. Thereby, controls the packing of microvilli at the apical membrane of epithelial cells. Through its cytoplasmic domain, interacts with microvillus cytoplasmic proteins to form the intermicrovillar adhesion complex/IMAC. This complex plays a central role in microvilli and epithelial brush border differentiation. May also play a role in cell-cell adhesion and contact inhibition in epithelial cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RLG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLG3#function" }, { "database": "UniProtKB", "id": "ARBA00059631", "url": "https://www.uniprot.org/uniprotkb/ARBA00059631#function" }, { "database": "UniProtKB", "id": "A0A5G2R4A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A9#function" }, { "database": "UniProtKB", "id": "A0A5G2QJ94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ94#function" }, { "database": "UniProtKB", "id": "A0A5G2QHQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ3#function" }, { "database": "UniProtKB", "id": "A0A5G2QTS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS0#function" }, { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDHR2", "url": "https://www.uniprot.org/uniprotkb/F1S3A1", "locus": { "chromosome": "2", "start_pos": 81318407, "end_pos": 81361606, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014055", "url": "https://www.ensembl.org/id/ENSSSCG00000014055" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014055", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014055", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525685", "url": "https://www.ncbi.nlm.nih.gov/gene/100525685", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525685", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525685", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S3A1", "url": "https://www.orthodb.org/?gene=F1S3A1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013850328", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013850328", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QHQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4A9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLG3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3A1-1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWPWLSCLLLPALIVSVAANVAPTFLSNMSAVTLPEDLPVGAEAFWLVAQDQDQDALTYGISGLYAYFFNVIRNTGEVKLANLLDYETLYWFSINISVSDNHNNPVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTVSAENPDPQAGEATAQVLVTVEDVNDTPPTLDATSLRGIRVAENGSQHGIVAEVVAQDVDTMSQVEVQLVNVICTKAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFVIIPELVMPNQQVASVRARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAALAQATRTTVYIVNIQDIDSAARARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSDLDHISLNSLDDNSVDLANSKQEIKKEALCSLKEQDPEPLSRVLSARKVGPREQKEGLAFDNKGLNTTDL", "length": 1310, "header": "tr|F1S3A1-1|F1S3A1_PIG Isoform 1 of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=3 CANONICAL=F1S3A1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ3/entry", "sequence": { "sequence": "MAWPWLSCLLLPALIVSVAANVAPTFLSNMSAVTLPEDLPVGAEAFWLVAQDQDQDALTYGISGLYAYFFNVIRNTGEVKLANLLDYETLYWFSINISVSDNHNNPVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTVSAENPDPQAGEATAQVLVTVEDVNDTPPTLDATSLRGIRVAENGSQHGIVAEVVAQDVDTMSQVEVQLVNVICTKAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFGGAPVLAQPPDDVYSHSQARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAGLLGGSRLLTPPLPRSRARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSHLILALALHLPSLFPQKEALCSLKEQDPEPLSRVLSARKVGPREQKEGLAFDNKGLNTTDL", "length": 1296, "header": "tr|A0A5G2QHQ3-1|F1S3A1_PIG Computationally mapped isoform of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=2 CANONICAL=F1S3A1-1" }, "locus": { "chromosome": "2", "start_pos": 81349156, "end_pos": 81319359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066593.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066593.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064314.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064314.2" } ] } }, { "isoform_ac": "A0A5G2QJ94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ94/entry", "sequence": { "sequence": "MVPKSAGRTTASPDSAHLCWRRPSSASGTPSGAQVPPEVMAWPWLSCLLLPALIVSVAANVAPTFLSNMSAVTLPEDLPVGAEAFWLVAQDQDQDALTYGISGLYAYFFNVIRNTGEVKLANLLDYETLYWFSINISVSDNHNNPVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTVSAENPDPQAGEATAQVLVTVEDVNDTPPTLDATSLRGIRVAENGSQHGIVAEVVAQDVDTMSQVEVQLVNVICTKAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFGGAPVLAQPPDDVYSHSQARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAGLLGGSRLLTPPLPRSRARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSHLILALALHLPSLFPQKEALCSLKEQDPEPLSRVLSARKCDRERVGLRAVRGQWGVSAGFVGS", "length": 1337, "header": "tr|A0A5G2QJ94-1|A0A5G2QJ94_PIG Computationally mapped isoform of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=1 CANONICAL=F1S3A1-1" }, "locus": { "chromosome": "2", "start_pos": 81361592, "end_pos": 81318410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081036.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081036.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064532.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064532.1" } ] } }, { "isoform_ac": "A0A5G2QTS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTS0/entry", "sequence": { "sequence": "MAWPWLSCLLLPALIVSVAANVAPTFLSNMSAVTLPEDLPVGAEAFWLVAQDQDQDALTYGISGLYAYFFNVIRNTGEVKLANLLDYETLYWFSINISVSDNHNNPVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFVIIPELVMPNQQVASVRARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAALAQATRTTVYIVNIQDIDSAARARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSDLDHISLNSLDDNSVDLANSKQEIKKEALCSLKEQDPEPLSRVLSARKVGPREQKEGLAFDNKGLNTTDL", "length": 1234, "header": "tr|A0A5G2QTS0-1|F1S3A1_PIG Computationally mapped isoform of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=1 CANONICAL=F1S3A1-1" }, "locus": { "chromosome": "2", "start_pos": 81349156, "end_pos": 81319359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089281.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089281.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065390.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065390.1" } ] } }, { "isoform_ac": "A0A5G2R4A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A9/entry", "sequence": { "sequence": "MVPKSAGRTTASPDSAHLCWRRPSSASGTPSGAQVPPEVMAWPWLSCLLLPALIVSVAANVAPTFLSNMSAVTLPEDLPVGELPSLSPDCAKPLLTRGSQGLLHFLGSPGLSHLQVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTVSAENPDPQAGEATAQVLVTVEDVNDTPPTLDATSLRGIRVAENGSQHGIVAEVVAQDVDTMSQVEVQLVNVICTKAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFGGAPVLAQPPDDVYSHSQARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAGLLGGSRLLTPPLPRSRARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSHLILALALHLPSLFPQKEALCSLKEQDPEPLSRVLSARKCDRERVGLRAVRGQWGVSAGFVGS", "length": 1307, "header": "tr|A0A5G2R4A9-1|F1S3A1_PIG Computationally mapped isoform of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=1 CANONICAL=F1S3A1-1" }, "locus": { "chromosome": "2", "start_pos": 81361592, "end_pos": 81318410, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073824.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073824.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071921.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071921.1" } ] } }, { "isoform_ac": "A0A5G2RLG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLG3/entry", "sequence": { "sequence": "MSAVTLPEDLPVGAEAFWLVAQDQDQDALTYGISGLYAYFFNVIRNTGEVKLANLLDYETLYWFSINISVSDNHNNPVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTVSAENPDPQAGEATAQVLVTVEDVNDTPPTLDATSLRGIRVAENGSQHGIVAEVVAQDVDTMSQVEVQLVNVICTKAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFVIIPELVMPNQQVASVRARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAALAQATRTTVYIVNIQDIDSAARARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSDLDHISLNSLDDNSVDLANSKQEIKKEALCSLKEQDPEPLSRVLSARKVGPREQKEGLAFDNKGLNTTDL", "length": 1281, "header": "tr|A0A5G2RLG3-1|F1S3A1_PIG Computationally mapped isoform of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=2 CANONICAL=F1S3A1-1" }, "locus": { "chromosome": "2", "start_pos": 81348794, "end_pos": 81319359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082845.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082845.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073158.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073158.2" } ] } }, { "isoform_ac": "F1S3A1-1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1/entry", "sequence": { "sequence": "MAWPWLSCLLLPALIVSVAANVAPTFLSNMSAVTLPEDLPVGAEAFWLVAQDQDQDALTYGISGLYAYFFNVIRNTGEVKLANLLDYETLYWFSINISVSDNHNNPVQKEMQVIVEDRNDNAPVFQNTDFSTSINETLPVGSVVFSVLAVDKDTGSAGAVVYSIERVIPSSDGSEYLFSILPNGSIILNGSLSYNNKSAFYQLELKACDSGGLYNNSIIVQCSSPVFVSISVIDQPDLDPQFVREFYSASVAEDAPQGTSVLKVEAMDSDRGINDLVIYSISNSTRPDWFKITSDGVIEVSSTLDREQLLEEDEEVQVQVTATEKNLNIYGQEAKVSIWVTLRVTDVNDHKPEFYNCSLSTCTFTPQEAQVNFTGYVDEHSSTRIPIDDLTMVVYDPDKGSNGTFWLSLEGPDAEAFSVSPERAAGSVEVQVLVKTPSQVDYEQQMVMWVQVVATDSVSKNSSIAMVTIYLRDINDHRPTFPQSLYNLNVSEHSEAGYVVTDSIHAFDPDTGEGGRITYSLLPGNGDDVFAVDPDSGTVTVRNGTLLDREKQAVYYLTLQATDGGNQSSSTTLHIILLDINDNKPVVTGSYNIFVQEEGGNVSVAIQAHDDDQPDTNNSLLHFSLLPSSYSHNFSVDPDKGILTNLGPLDREAIDPTLGGRIVLTVRVSDCGVPALWTDVNVTITVEDINDNLPIFSHPSYSFSVKERDPGVLIGEVEAWDADQTEANNRISFSLSGTGANNFILRGTVLGSGGAKGFLSLPSDTSLDYETQPFFSLTVSAENPDPQAGEATAQVLVTVEDVNDTPPTLDATSLRGIRVAENGSQHGIVAEVVAQDVDTMSQVEVQLVNVICTKAGIDVGSLCHGWFSVLDNGSVLINQSEAIDYETCDLVTLVVRACDITTDPRFQAYSDNGSLPITIEDVNDNAPYFLPEDKTFVIIPELVMPNQQVASVRARDDDSGNNGAILFSIFQVDFVAKDGTVIPFQGFFRISTSVEDSVFTGNIELVTSLDSTLQGTYQVTVKAQDRPSEGPALEAKIMLNLFTVDQSYRVRLQFSISKEDVGANMEEIKAALAQATRTTVYIVNIQDIDSAARARGRSYLDAYFVFSNGSALTLDQLSMMIRNDQDSLTQLLQLGLVVLGSQESQESELPNTLRNVVIGLGVALVLVIVIMTMILVCVQKSYRRKLRAMKAAKEAQKTAVGVMPPVSAIPGTNVYNTERANPMLNLPTKDLGFESQSSSSDLDHISLNSLDDNSVDLANSKQEIKKEALCSLKEQDPEPLSRVLSARKVGPREQKEGLAFDNKGLNTTDL", "length": 1310, "header": "tr|F1S3A1-1|F1S3A1_PIG Isoform 1 of Cadherin-related family member 2 OS=Sus scrofa OX=9823 GN=CDHR2 PE=1 SV=3 CANONICAL=F1S3A1-1" }, "locus": { "chromosome": "2", "start_pos": 81349156, "end_pos": 81319359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015354.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015354.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014946.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014946.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHQ3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHQ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525685", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525685", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "epithelium development", "id": "GO:0060429", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060429", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "axonogenesis", "id": "GO:0007409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007409", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "regulation of microvillus length", "id": "GO:0032532", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032532", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "negative regulation of cell growth involved in contact inhibition", "id": "GO:0060243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060243", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "intermicrovillar adhesion", "id": "GO:0090675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090675", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "microvillus membrane", "id": "GO:0031528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031528", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "anchoring junction", "id": "GO:0070161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070161", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "brush border membrane", "id": "GO:0031526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031526", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" }, { "name": "cell adhesion molecule binding", "id": "GO:0050839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050839", "evidence": [ { "database": "UniProtKB", "id": "F1S3A1", "url": "https://www.uniprot.org/uniprotkb/F1S3A1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1108, "end_pos": 1110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1306, "end_pos": 1308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 566, "end_pos": 568, "annotation": "n_glycosylation_sequon" }, { "start_pos": 601, "end_pos": 603, "annotation": "n_glycosylation_sequon" }, { "start_pos": 617, "end_pos": 619, "annotation": "n_glycosylation_sequon" }, { "start_pos": 633, "end_pos": 635, "annotation": "n_glycosylation_sequon" }, { "start_pos": 681, "end_pos": 683, "annotation": "n_glycosylation_sequon" }, { "start_pos": 803, "end_pos": 805, "annotation": "n_glycosylation_sequon" }, { "start_pos": 822, "end_pos": 824, "annotation": "n_glycosylation_sequon" }, { "start_pos": 872, "end_pos": 874, "annotation": "n_glycosylation_sequon" }, { "start_pos": 878, "end_pos": 880, "annotation": "n_glycosylation_sequon" }, { 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OS=Sus scrofa OX=9823 GN=MRPS2 PE=1 SV=2 CANONICAL=F1S001-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1915180, "end_pos": 1913028, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074714.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074714.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064746.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064746.1" } ] } }, { "isoform_ac": "F1S001-1", "url": "https://www.uniprot.org/uniprotkb/F1S001/entry", "sequence": { "sequence": "MASGPLLPRLLGAGAPRRPLRLHLVPTATPGPAGPTGRTLGSNAAPAAREPELGNDLRDRILSEPLKHADFFNLKELFSVRSLFDARVHLGHKAGCRHRFMEPYLFGSRLGQDIIDLEQTAAHLQLALNFTAHVAYREGIILFVSRHRQFAHLIETTARDCGEYAHTRYFKGGLLTNAPLLLGPGVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPALITYPVPGNDDSPPAVRLFCRLFQVAISRAKEKRRQVEALYRLQGPAGAERGPAAPPPPE", "length": 289, "header": "tr|F1S001-1|F1S001_PIG Isoform 1 of Small ribosomal subunit protein uS2m OS=Sus scrofa OX=9823 GN=MRPS2 PE=1 SV=1 CANONICAL=F1S001-1" }, 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"type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 36, "start_aa": "Thr", "end_pos": 36, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr36", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.", "journal": "Science", "date": "2015", "authors": "Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "reference": [ { "type": "PubMed", "id": "25837512", "url": "https://glygen.org/publication/PubMed/25837512" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "ssc:100518410", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518410", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0L579-1", "protein_name": "Small ribosomal subunit protein uS2m", "gene_name": 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"MTKRYWNIDLEEMMRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRDLRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALRECITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQNS", "length": 236 }, "evidence": [ { "id": "F1S001", "url": "https://omabrowser.org/oma/group/F1S001/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P82923-1", "protein_name": "Small ribosomal subunit protein uS2m", "gene_name": "MRPS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATGAVLPRLLGAGVRAAPRGRAAQRGRTLGSAAAAAAREPERDSDRSARILSEPLKHSDFFNVKELFSVRSLFNARVHLGHKAGCRHRFMEPYIFGSRLGQDIIDLEQTATHLQLALNFTAHVAFRGGIILFVSRARQFSHLIESTARSCGEYAHTRYFKGGLLTNAPLLLGARVRLPDLIIFLHTLNNVFEPHVAVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPAVQLFCQLFQTAVTRAKEKRRQLEALYRLQGAPGPHPANPAAPGAPSPGAQAQLGMGHSP", "length": 293 }, "evidence": [ { "id": "F1S001", "url": "https://omabrowser.org/oma/group/F1S001/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q924T2-1", "protein_name": "Small ribosomal subunit protein uS2m", "gene_name": "Mrps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPAPAVLTRLLCAGVRRWPGFLQKAIPGPAEQNGRKVTGAPVPAVSEPQDGDDFQSRILDTPLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKRRQMEALHRLQSPKGSEGSGTSPVPDKSHSP", "length": 291 }, "evidence": [ { "id": "F1S001", "url": "https://omabrowser.org/oma/group/F1S001/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y399-1", "protein_name": "Small ribosomal subunit protein uS2m", "gene_name": "MRPS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATSSAALPRILGAGARAPSRWLGFLGKATPRPARPSRRTLGSATALMIRESEDSTDFNDKILNEPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATHLQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTRYFRGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPVPGNDDSPLAVHLYCRLFQTAITRAKEKRQQVEALYRLQGQKEPGDQGPAHPPGADMSHSL", "length": 296 }, "evidence": [ { "id": "F1S001", "url": "https://omabrowser.org/oma/group/F1S001/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" }, { "name": "mitochondrial ribosome assembly", "id": "GO:0061668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061668", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "small ribosomal subunit", "id": "GO:0015935", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015935", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" }, { "name": "mitochondrial small ribosomal subunit", "id": "GO:0005763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005763", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1S001", "url": "https://www.uniprot.org/uniprotkb/F1S001" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "F1S001", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S001" }, { "id": "6GAZ", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAZ" }, { "id": "6GAW", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAW" } ], "binding_site_uniprot": 223, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 223, "end_pos": 223, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S001", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S001" }, { "id": "6GAZ", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAZ" }, { "id": "6GAW", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAW" } ], "binding_site_uniprot": 239, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 239, "end_pos": 239, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S001", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S001" }, { "id": "6GAZ", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAZ" }, { "id": "6GAW", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAW" } ], "binding_site_uniprot": 240, "amino_acid": "Asp", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 240, "end_pos": 240, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S001", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S001" }, { "id": "6GAZ", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAZ" }, { "id": "6GAW", "database": "PDB", "url": "https://www.rcsb.org/structure/6GAW" } ], "binding_site_uniprot": 92, "amino_acid": "His", "chebi_lig_id": "CHEBI:18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 92, "end_pos": 92, "start_aa": "His", "end_aa": "His", "glycosite_overlap": [] } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 29, 36 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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{ "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RX64-1", "uniprot_ac": "F1RX64", "uniprot_id": "F1RX64_PIG", "mass": { "chemical_mass": 21829.0, "monoisotopic_mass": 21829.0 }, "refseq": { "ac": "XP_020930531", "name": "RNA-binding protein with multiple splicing isoform X10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930531" }, "gene_names": [ { "name": "RBPMS", "type": "recommended", "evidence": [ { "id": "F1RX64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX64" } ] }, { "name": "RBPMS", "type": "synonym", "evidence": [ { "id": "XP_020930531", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930531" } ] } ], "protein_names": [ { "name": "RNA binding protein, mRNA processing factor", "type": "synonym", "evidence": [ { "id": "F1RX64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX64/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding protein with multiple splicing isoform X10", "type": "synonym", "evidence": [ { "id": "XP_020930531", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930531" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RX64", "url": "https://www.uniprot.org/uniprotkb/F1RX64" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBPMS", "url": "https://www.uniprot.org/uniprotkb/F1RX64", "locus": { "chromosome": "15", "start_pos": 54539238, "end_pos": 54725583, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015846", "url": "https://www.ensembl.org/id/ENSSSCG00000015846" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015846", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015846", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12682", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12682", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514545", "url": "https://www.ncbi.nlm.nih.gov/gene/100514545", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514545", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514545", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AQIRWIP", "url": "https://omabrowser.org/oma/group/AQIRWIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BLU9", "url": "https://www.orthodb.org/?gene=A0A287BLU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10501", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10501", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930531", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930531", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BLU9", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7V7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJ34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ34-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RE42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RE42-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0S6V0", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S6V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0S6V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S6V0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX64", "url": "https://www.uniprot.org/uniprotkb/F1RX64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX64-1", "url": "https://www.uniprot.org/uniprotkb/F1RX64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQGWKSRQFC", "length": 196, "header": "tr|F1RX64-1|F1RX64_PIG Isoform 1 of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=3 CANONICAL=F1RX64-1" }, "isoforms": [ { "isoform_ac": "A0A287BLU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLU9/entry", "sequence": { "sequence": "MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQCFSPEAKPNTPVFCPLLQQIRFVSGNVFVTYQPTADQQRELPC", "length": 219, "header": "tr|A0A287BLU9-1|A0A287BLU9_PIG Computationally mapped isoform of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=1 CANONICAL=F1RX64-1" }, "locus": { "chromosome": "15", "start_pos": 54724873, "end_pos": 54564514, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043573.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043573.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057044.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057044.1" } ] } }, { "isoform_ac": "A0A5G2Q7V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7V7/entry", "sequence": { "sequence": "MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQVIYTPRPRLHSPPHRSFQTWFPRAHRTTNTSPANRATLQRTVPSQSS", "length": 223, "header": "tr|A0A5G2Q7V7-1|A0A5G2Q7V7_PIG Computationally mapped isoform of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=1 CANONICAL=F1RX64-1" }, "locus": { "chromosome": "15", "start_pos": 54724873, "end_pos": 54567819, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081045.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081045.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060214.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060214.1" } ] } }, { "isoform_ac": "A0A5G2QJ34-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ34/entry", "sequence": { "sequence": "MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQGWKSRQFC", "length": 183, "header": "tr|A0A5G2QJ34-1|F1RX64_PIG Computationally mapped isoform of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=1 CANONICAL=F1RX64-1" }, "locus": { "chromosome": "15", "start_pos": 54724873, "end_pos": 54554811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081669.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081669.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063936.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063936.1" } ] } }, { "isoform_ac": "A0A5G2RE42-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE42/entry", "sequence": { "sequence": "MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQLYEGQSVRRNHPFFSLPKGTSLVVPIL", "length": 203, "header": "tr|A0A5G2RE42-1|F1RX64_PIG Computationally mapped isoform of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=1 CANONICAL=F1RX64-1" }, "locus": { "chromosome": "15", "start_pos": 54724873, "end_pos": 54562558, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078026.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078026.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069082.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069082.1" } ] } }, { "isoform_ac": "A0A8D0S6V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0S6V0/entry", "sequence": { "sequence": "MAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQVIYTPRPRLHSPPHRSFQTWFPRAHRTTNTSPANRATLQRTVPSQSS", "length": 119, "header": "tr|A0A8D0S6V0-1|F1RX64_PIG Computationally mapped isoform of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=1 CANONICAL=F1RX64-1" }, "locus": { "chromosome": "15", "start_pos": 54610132, "end_pos": 54567819, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086782.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086782.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072975.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072975.1" } ] } }, { "isoform_ac": "F1RX64-1", "url": "https://www.uniprot.org/uniprotkb/F1RX64/entry", "sequence": { "sequence": "MNNGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQGWKSRQFC", "length": 196, "header": "tr|F1RX64-1|F1RX64_PIG Isoform 1 of RNA binding protein, mRNA processing factor OS=Sus scrofa OX=9823 GN=RBPMS PE=1 SV=3 CANONICAL=F1RX64-1" }, "locus": { "chromosome": "15", "start_pos": 54724873, "end_pos": 54554811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017254.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017254.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016792.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016792.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJ34", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJ34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514545", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514545", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6G705-1", "protein_name": "RNA-binding protein with multiple splicing", "gene_name": "Rbpms", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQMRWLPPSEATSQGWKSRQFC", "length": 197 }, "evidence": [ { "id": "F1RX64", "url": "https://omabrowser.org/oma/group/F1RX64/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Y0P3-1", "protein_name": "RNA binding protein, mRNA processing factor", "gene_name": "RBPMS", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSGAAEREGPAEPGLPEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKSKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPGSPEVWGPYPLYPAELAPALPPPAFTYPASLHAQMRWLPPSEAGSQGWKSRQFC", "length": 194 }, "evidence": [ { "id": "F1RX64", "url": "https://omabrowser.org/oma/group/F1RX64/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q93062-1", "protein_name": "RNA-binding protein with multiple splicing", "gene_name": "RBPMS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNNGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAFTYPASLHAQMRWLPPSEATSQGWKSRQFC", "length": 196 }, "evidence": [ { "id": "F1RX64", "url": "https://omabrowser.org/oma/group/F1RX64/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WVB0-1", "protein_name": "RNA-binding protein with multiple splicing", "gene_name": "Rbpms", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGTPNPSTPLPNTVPQFIAREPYELTVPALYPSSPEVWAPYPLYPAELAPALPPPAAFTYPASLHAQMRWIPPSEATSQGWKSRQFC", "length": 197 }, "evidence": [ { "id": "F1RX64", "url": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "F1RX64", "url": "https://www.uniprot.org/uniprotkb/F1RX64" } ], "pmid": "" }, { "name": "SMAD protein signal transduction", "id": "GO:0060395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060395", "evidence": [ { "database": "UniProtKB", "id": "F1RX64", "url": "https://www.uniprot.org/uniprotkb/F1RX64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RX64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX64" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 101, 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"evidence": [ { "id": "F1RR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RR83" } ] }, { "name": "CERCAM", "type": "synonym", "evidence": [ { "id": "XP_020925296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925296" } ] } ], "protein_names": [ { "name": "Cerebral endothelial cell adhesion molecule", "type": "synonym", "evidence": [ { "id": "F1RR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RR83/entry#names_and_taxonomy" } ] }, { "name": "probable inactive glycosyltransferase 25 family member 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925296" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RR83", "url": "https://www.uniprot.org/uniprotkb/F1RR83" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CERCAM", "url": "https://www.uniprot.org/uniprotkb/F1RR83", "locus": { "chromosome": "1", "start_pos": 268847223, "end_pos": 268834966, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005650", "url": "https://www.ensembl.org/id/ENSSSCG00000005650" } ] } } ], "crossref": [ { "id": "F1RR83", "url": "https://alphafold.ebi.ac.uk/entry/F1RR83", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005650", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005650", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06532", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06532", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157139", "url": "https://www.ncbi.nlm.nih.gov/gene/100157139", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VEVHVCN", "url": "https://omabrowser.org/oma/group/VEVHVCN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RR83", "url": "https://www.orthodb.org/?gene=F1RR83", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10730:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10730:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925296", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QPI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RD67", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RD67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR83", "url": "https://www.uniprot.org/uniprotkb/F1RR83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR83-1", "url": "https://www.uniprot.org/uniprotkb/F1RR83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAAPAAPLLQLLLLLGPRLQAAGIAEPPLPTVVLVILARNAEHSLPHYLGALERLDYPRARLALWCATDHNEDSTTEMLQEWLAAVGEDYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGADYILFADTDNILTNNQTLRLLIEQQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLISLRAEGTGQLSFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLLLEALVDGPPMWASAHVSRPPKRPSKMGFDEVFVISLARRPDRRERMLSSLWEMEIAGRVVDAVDGRMLNSSVMRRLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVAQGLAQVVVFEDDVRFESNFRGRLERLMEEVEAEKLPWDLIYLGRKQVNPEEEAAVEGLPQLVVAGYSYWTLAYVLSLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWLSDTETSSPWDDDSGRLISWSGSYKTLRDPRLDLAGSSGHSLHPRPQDEL", "length": 595, "header": "tr|F1RR83-1|F1RR83_PIG Isoform 1 of Cerebral endothelial cell adhesion molecule OS=Sus scrofa OX=9823 GN=CERCAM PE=3 SV=3 CANONICAL=F1RR83-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI7/entry", "sequence": { "sequence": "MRAAPAAPLLQLLLLLGPRLQAAGIAEPPLPTVVLVILARNAEHSLPHYLGALERLDYPRARLALWSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGADYILFADTDNILTNNQTLRLLIEQQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLISLRAEGTGQLSFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLLLEALVDGPPMWASAHVSRPPKRPSKMGFDEVFVISLARRPDRRERMLSSLWEMEIAGRVVDAVDGRMLNSSVMRRLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVAQGLAQVVVFEDDVRFESNFRGRLERLMEEVEAEKLPWDLIYLGRKQVNPEEEAAVEGLPQLVVAGYSYWTLAYVLSLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWLSDTETSSPWDDDSGRLISWSGSYKTLRDPRLDLAGSSGHSLHPRPQDEL", "length": 558, "header": "tr|A0A5G2QPI7-1|F1RR83_PIG Computationally mapped isoform of Cerebral endothelial cell adhesion molecule OS=Sus scrofa OX=9823 GN=CERCAM PE=3 SV=1 CANONICAL=F1RR83-1" }, "locus": { "chromosome": "1", "start_pos": 268846473, "end_pos": 268838108, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070052.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070052.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066610.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066610.1" } ] } }, { "isoform_ac": "A0A5G2RD67-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD67/entry", "sequence": { "sequence": "MLQEWLAAVGEDYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMEFADTDNILTNNQTLRLLIEQQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLISLRAEGTGQLSFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLLLEALVDGPPMWASAHVSRPPKRPSKMGFDEVFVISLARRPDRRERMLSSLWEMEIAGRVVDAVDGRMLNSSVMRRLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVAQGLAQVVVFEDDVRFESNFRGRLERLMEEVEAEKLPWDLIYLGRKQVNPEEEAAVEGLPQLVVAGYSYWTLAYVLSLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWLSDTETSSPWDDDSGRLISWSGSYKTLRDPRLDLAGSSGHSLHPRPQDEL", "length": 499, "header": "tr|A0A5G2RD67-1|F1RR83_PIG Computationally mapped isoform of Cerebral endothelial cell adhesion molecule OS=Sus scrofa OX=9823 GN=CERCAM PE=3 SV=2 CANONICAL=F1RR83-1" }, "locus": { "chromosome": "1", "start_pos": 268846473, "end_pos": 268839734, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077772.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077772.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072283.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072283.2" } ] } }, { "isoform_ac": "F1RR83-1", "url": "https://www.uniprot.org/uniprotkb/F1RR83/entry", "sequence": { "sequence": "MRAAPAAPLLQLLLLLGPRLQAAGIAEPPLPTVVLVILARNAEHSLPHYLGALERLDYPRARLALWCATDHNEDSTTEMLQEWLAAVGEDYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGADYILFADTDNILTNNQTLRLLIEQQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLISLRAEGTGQLSFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLLLEALVDGPPMWASAHVSRPPKRPSKMGFDEVFVISLARRPDRRERMLSSLWEMEIAGRVVDAVDGRMLNSSVMRRLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVAQGLAQVVVFEDDVRFESNFRGRLERLMEEVEAEKLPWDLIYLGRKQVNPEEEAAVEGLPQLVVAGYSYWTLAYVLSLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLRAFSARPLLAAPTHYAGDAEWLSDTETSSPWDDDSGRLISWSGSYKTLRDPRLDLAGSSGHSLHPRPQDEL", "length": 595, "header": "tr|F1RR83-1|F1RR83_PIG Isoform 1 of Cerebral endothelial cell adhesion molecule OS=Sus scrofa OX=9823 GN=CERCAM PE=3 SV=3 CANONICAL=F1RR83-1" }, "locus": { "chromosome": "1", "start_pos": 268846473, "end_pos": 268838108, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006212.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006212.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006053.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006053.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AHF9-1", "protein_name": "Cerebral endothelial cell adhesion molecule", "gene_name": "CERCAM", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGPLRCAALVLLLLLLLGTGTGTGTGGSPEPPRVVLALLARNAQHSLPHCLGALESLDFPAGNIALWCATDHNSDNTTAMLQEWLQAVGSNYHSVAWKAEEGPSSYPDELSPKHWSDKRYENLMRLKQEALSYARGLRADYILFVDTDSILTNNQTLTFLMAQNKSVVAPMLDSQTFYSNFWCGITPQGFYRRTADYFPTKNRQRRGCFAVPMVYATFLIDLRKEETAQLAFYPPHPNYTWAFDDIIVFAYSCQEAGAEVHVCNQQRFGYINVPVKAHQTLEDERVNFVHLTLEAMVDGPPMQRSRHISVPPKPLTKLGFDEIFLINLVRRPDRRRRMLESLQELEITARVVDAVDGSTLNSSDIKVLGVDLLPGYYDPFSGRTLTKGEVGCFLSHYNIWKEIVSQGLERVLVFEDDVRFEVSFPARLQQLMEELEEARHDWDLIYLGRKQVNAEDEAPVEGVQNLVVAGYSYWTLAYAISLRGAQKLLAAKPLSKMLPVDEFLPIMYDKHPNEDYKRHFAPRDLQVFSAHPLLVYPTHYAGDSNWLSDTETSTIWDDDSKQTGWVGSQKTLRDPRDGGGYLRSASHDEF", "length": 590 }, "evidence": [ { "id": "F1RR83", "url": "https://omabrowser.org/oma/group/F1RR83/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A3KGW5-1", "protein_name": "Inactive glycosyltransferase 25 family member 3", "gene_name": "Cercam", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHVARLLPLLLLLGQQLRAASVTEPTLPTVVLAILARNAEHSLPHYLGALERLDYPRARLALWCATDHNMDNTTGMLREWLAAVGRDYATVVWKPEEEARSYPDEQGPKHWTKERHQFLMELRQEALAFARDWGADYILFADTDNILTNNQTLKLLIDRQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRQGCFRVPMVHSTFLLSLQTEETARLAFYPPHPNYSWPFDDIIVFAYACQAAGVSMHVCNDHRYGYMNVVVKPHQSLEEEKTNFIHLILEALVDGPPMLASAHVSRPPKKLSKMGFDEVFVISLARRPQRRARMLSSLWEMEISAQVVDAVDGRTLNSSILKHLGVDLLPGYQDPYSGHTLTKGEVGCFLSHYSIWEEVVARGLARVVVFEDDVRFKDNFRRRLERLMEDVLIQKLSWDLIYLGRKQVNPEEEVAVEGLPGLVVAGYSYWTLAYTLSLAGARKLLASQPLHRMLPVDEFLPVMFDRHPNDQYKAYFWPRDLQAFSARPLLASPTHYSGDAEWLSDTETSSPWDDDSGRLISQTGSQKALRGPHLHLTGSSGHSLHPHHRDEL", "length": 592 }, "evidence": [ { "id": "F1RR83", "url": "https://omabrowser.org/oma/group/F1RR83/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7MB73-1", "protein_name": "Probable inactive glycosyltransferase 25 family member 3", "gene_name": "CERCAM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRAAPAAPLLQLLLLLGPRPEAAGVAEPPLPTVVLAILARNAEHSLPHYLGALERLDYPRARLALWCATDHNVDNTTAMLREWLAAVGDNYAAVVWRPEGEPRSYPDEEGPKHWTKERHQFLMELKQEALTFARDWGADYILFADTDNILTNNQTLRLLIEPGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTADYFPTKNRQRRGCFRVPMVHSTFLVSLRAEGTGQLAFYPPHPNYTWPFDDIIVFAYACQAAGVAVHVCNEQRYGYLNVPVKSHQGLEDERVNFIHLILEALVDGPPMWASAHVSRPPKRPSKMGFDEVFVISLARRPDRRERMLTSLWEMEISGRVVDAVDGRMLNSSVMRTLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVTRGLAQVVVFEDDVRFESNFKGRLEQLMEEVEAEKLPWDLIYLGRKQVNPEEEAVVEGLPHLVAAGYSYWTLAYVLSLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLQAFSARPLLAAPTHYAGDSEWLSDTETSSPWDDDSGRLISWTGSYKTLRGPRLDLAGGSGHSLRPHPRDEL", "length": 595 }, "evidence": [ { "id": "F1RR83", "url": "https://omabrowser.org/oma/group/F1RR83/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5T4B2-1", "protein_name": "Inactive glycosyltransferase 25 family member 3", "gene_name": "CERCAM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAARAAPLLQLLLLLGPWLEAAGVAESPLPAVVLAILARNAEHSLPHYLGALERLDYPRARMALWCATDHNVDNTTEMLQEWLAAVGDDYAAVVWRPEGEPRFYPDEEGPKHWTKERHQFLMELKQEALTFARNWGADYILFADTDNILTNNQTLRLLMGQGLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRRGCFRVPMVHSTFLASLRAEGADQLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNEHRYGYMNVPVKSHQGLEDERVNFIHLILEALVDGPRMQASAHVTRPSKRPSKIGFDEVFVISLARRPDRRERMLASLWEMEISGRVVDAVDGWMLNSSAIRNLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVARGLARVLVFEDDVRFESNFRGRLERLMEDVEAEKLSWDLIYLGRKQVNPEKETAVEGLPGLVVAGYSYWTLAYALRLAGARKLLASQPLRRMLPVDEFLPIMFDQHPNEQYKAHFWPRDLVAFSAQPLLAAPTHYAGDAEWLSDTETSSPWDDDSGRLISWSGSQKTLRSPRLDLTGSSGHSLQPQPRDEL", "length": 595 }, "evidence": [ { "id": "F1RR83", "url": "https://omabrowser.org/oma/group/F1RR83/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5U309-1", "protein_name": "Probable inactive glycosyltransferase 25 family member 3", "gene_name": "Cercam", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLFIIRARACGGDARSWKQPDQLHPILFTNLRLPLQLIASSAGGATDHNVDNTTGMLQEWLAAVGRDYATVVWKSEDEARSYPDEQGPKHWTRERHQFLMELKQEALAFARDWGADYILFADTDNILTNNQTLRLLIDRQLPVVAPMLDSQTYYSNFWCGITPQGYYRRTAEYFPTKNRQRQGCFRVPMVHSTFLVSLQTEETARLAFYPPHPNYTWPFDDIIVFAYACQAAGVSVHVCNDHRYGYMNVGVKPHQGLEEEKTNFIHLILEALVDGPPMMASAHVSRPPKKPSKMGFDEVFVISLARRPQRRARMLSSLWEMEISARVVDAVDGRTLNSSILKHLGVDLLPGYQDPYSGRTLTKGEVGCFLSHYSIWEEVVAKGLARVVVFEDDVRFEDNFRKRLERLMEDVLTQKLSWDLIYLGRKQVNPEEEVAVEGLPGLVVAGYSYWTLAYTLSLAGARKLLASQPLHRMLPVDEFLPVMFDRHPNDQYKAHFWPRDLQAFSARPLLASPTHYAGDTEWLSDTETSSPWDDDSGRLISWTGSQKTLRGPYLHLAGSSGHSLHPHPRDEL", "length": 572 }, "evidence": [ { "id": "F1RR83", "url": "https://omabrowser.org/oma/group/F1RR83/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RR83", "url": "https://www.uniprot.org/uniprotkb/F1RR83" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RR83-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 595, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RR83-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RR83" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RR83" }, { "id": "PF01755", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01755" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase family 25", "eco_id": "ECO_0000259", "start_pos": 320, "end_pos": 502, "start_aa": "Asp", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 153, "end_pos": 155 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 360, "end_pos": 362 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RYX1-1", "uniprot_ac": "F1RYX1", "uniprot_id": "F1RYX1_PIG", "mass": { "chemical_mass": 44911.0, "monoisotopic_mass": 44911.0 }, "refseq": { "ac": "XP_020938282", "name": "solute carrier family 22 member 18", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938282" }, "gene_names": [ { "name": "SLC22A18", "type": "recommended", "evidence": [ { "id": "F1RYX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ] }, { "name": "SLC22A18", "type": "synonym", "evidence": [ { "id": "XP_020938282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938282" } ] }, { "name": "SLC67A1", "type": "synonym", "evidence": [ { "id": "F1RYX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ] } ], "protein_names": [ { "name": "Organic cation transporter-like protein 2", "type": "recommended", "evidence": [ { "id": "F1RYX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYX1/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 22 member 18", "type": "synonym", "evidence": [ { "id": "XP_020938282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938282" } ] } ], "function": [ { "annotation": "May act as a transporter of organic cations based on a proton efflux antiport mechanism. May play a role in the transport of chloroquine and quinidine-related compounds in kidney. Plays a role in the regulation of lipid metabolism.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R671", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R671#function" }, { "database": "UniProtKB", "id": "ARBA00093348", "url": "https://www.uniprot.org/uniprotkb/ARBA00093348#function" }, { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC22A18", "url": "https://www.uniprot.org/uniprotkb/F1RYX1", "locus": { "chromosome": "2", "start_pos": 2055750, "end_pos": 2028396, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012855", "url": "https://www.ensembl.org/id/ENSSSCG00000012855" } ] } } ], "crossref": [ { "id": "F1RYX1", "url": "https://alphafold.ebi.ac.uk/entry/F1RYX1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012855", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012855", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17331", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17331", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515296", "url": "https://www.ncbi.nlm.nih.gov/gene/100515296", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515296", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515296", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLMKYPR", "url": "https://omabrowser.org/oma/group/RLMKYPR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RYX1", "url": "https://www.orthodb.org/?gene=F1RYX1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24002:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24002:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-549127", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020938282", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938282", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QPZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R671", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R671", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R671-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R671-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYX1-1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MREAGAPRGQGQSPRGTRALSQPQIILLTYVLSALELTCLFMHFSVLPYLSRRLGLDSVAFGYQQTLFGVLQLLGGPVFGRFADQRGARAAFTLSFLASSGLYLLLAAACSPALPGVTLLFASRLPGALMHTLPAAQMVLADLSAPEERPTALSRLGLCFGVGVIFGSLLGGTLSSSCGIQCPVIVALVVSLLGAVLSFTCIPTNTKGASDHAQPVPPGRTKASVFDLKAISRLLLQPGVLPVFLVKVISGFPSGLFTVMFSIISMDFFQLEAAQASYLMSFFGVLQMVIQGLVIGRLSSHFSEGALLRASVLVFSLVGLAMALMTHVFHFCLLMPGLVFSLCTLNVVTDSLLTKAVSASDTGTMLGLCASVQPLMRTLGPTLGGLLYRSFGVPAFGHVQFAVNFLLLLVLWRQPIPRKTDKAP", "length": 424, "header": "tr|F1RYX1-1|F1RYX1_PIG Isoform 1 of Organic cation transporter-like protein 2 OS=Sus scrofa OX=9823 GN=SLC22A18 PE=3 SV=2 CANONICAL=F1RYX1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ1/entry", "sequence": { "sequence": "MREAGAPRGQGQSPRGTRALSQPQIILLTYVLSALELTCLFMHFSVLPYLSRRLGLDSVAFGYQQTLFGVLQLLGGPVFGRIQCPVIVALVVSLLGAVLSFTCIPTNTKGASDHAQPVPPGRTKASVFDLKAISRLLLQPGVLPVFLVKVISGFPSGLFTVMFSIISMDFFQLEAAQASYLMSFFGVLQMVIQGLVIGRLSSHFSEGALLRASVLVFSLVGLAMALMTHVFHFCLLMPGLVFSLCTLNVVTDSLLTKAVSASDTGTMLGLCASVQPLMRTLGPTLGGLLYRSFGVPAFGHVQFAVNFLLLLVLWRQPIPRKTDKAP", "length": 326, "header": "tr|A0A5G2QPZ1-1|F1RYX1_PIG Computationally mapped isoform of Organic cation transporter-like protein 2 OS=Sus scrofa OX=9823 GN=SLC22A18 PE=3 SV=1 CANONICAL=F1RYX1-1" }, "locus": { "chromosome": "2", "start_pos": 2055704, "end_pos": 2034685, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075375.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075375.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064134.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064134.1" } ] } }, { "isoform_ac": "A0A5G2R671-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R671/entry", "sequence": { "sequence": "MREAGAPRGQGQSPRGTRALSQPQIILLTYVLSALELTCLFMHFSVLPYLSRRLGLDSVAFGYQQTLFGVLQLLGGPVFGRFADQRGARAAFTLSFLASSGLYLLLAAACSPALPGVTLLFASRLPGALMHTLPAAQMVLADLSAPEERPTALSRLGLCFGVGVIFGSLLGGTLSSSCGIQCPVIVALVVSLLGAVLSFTCIPTNTKGASDHAQPVPPGRTKASVFDLKAISRLLLQPGVLPVFLVKVISGFPSGLFTVMFSIISMDFFQLEAAQASYLMSFFGVLQMVIQGLVIGRLSSHFSEGALLRASVLVFSLVGLAMALMTHVFHFCLLMPGLVFSLCTLNVVTDSLLTKAVSASDTAALESLPLATCSLRSTSFSSWSSGGSPYPGRQTKPHDRSPQAPTGNKLHQN", "length": 413, "header": "tr|A0A5G2R671-1|F1RYX1_PIG Computationally mapped isoform of Organic cation transporter-like protein 2 OS=Sus scrofa OX=9823 GN=SLC22A18 PE=3 SV=2 CANONICAL=F1RYX1-1" }, "locus": { "chromosome": "2", "start_pos": 2055750, "end_pos": 2034685, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078253.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078253.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072584.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072584.2" } ] } }, { "isoform_ac": "F1RYX1-1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1/entry", "sequence": { "sequence": "MREAGAPRGQGQSPRGTRALSQPQIILLTYVLSALELTCLFMHFSVLPYLSRRLGLDSVAFGYQQTLFGVLQLLGGPVFGRFADQRGARAAFTLSFLASSGLYLLLAAACSPALPGVTLLFASRLPGALMHTLPAAQMVLADLSAPEERPTALSRLGLCFGVGVIFGSLLGGTLSSSCGIQCPVIVALVVSLLGAVLSFTCIPTNTKGASDHAQPVPPGRTKASVFDLKAISRLLLQPGVLPVFLVKVISGFPSGLFTVMFSIISMDFFQLEAAQASYLMSFFGVLQMVIQGLVIGRLSSHFSEGALLRASVLVFSLVGLAMALMTHVFHFCLLMPGLVFSLCTLNVVTDSLLTKAVSASDTGTMLGLCASVQPLMRTLGPTLGGLLYRSFGVPAFGHVQFAVNFLLLLVLWRQPIPRKTDKAP", "length": 424, "header": "tr|F1RYX1-1|F1RYX1_PIG Isoform 1 of Organic cation transporter-like protein 2 OS=Sus scrofa OX=9823 GN=SLC22A18 PE=3 SV=2 CANONICAL=F1RYX1-1" }, "locus": { "chromosome": "2", "start_pos": 2055704, "end_pos": 2034685, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014051.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014051.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013666.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013666.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPZ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515296", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515296", "resource": "KEGG Pathway" }, { "id": "R-SSC-549127", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "resource": "Reactome", "description": "SLC-mediated transport of organic cations" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZQW0-1", "protein_name": "Organic cation transporter-like protein 2", "gene_name": "SLC22A18", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTMSGKNSPEGEEGAGRMKSESWGQSNAAGDVRRGRVILVAYLIVTLELTFLFMQFGVMPYLAKSLGLDSVGFGYLQTTFGVLQLVGGPIFGRFADQFGNRAALTLSCASASAFFLLLSISTSVPILFLSRLPSVFMHGLPGAQKVITDLTAPSERAAALGKLGLCFGVGIIIGSALGGVISTKFGIFVPMYFGLVGSLINTVLSVVWIPSPSKPKSEHRKTEHSSVFNIREILRVLKFPGVMEIFLVKVLSGFPIGLFLIMFSIISIEFFGLEAVESGYLMSYFGVLQMVVQGLVIGKLTSHCTEQTLLRLGVLVFAGVGLGMALMRTVWHYCIIVVPLVFAFNVLGTITDSILTKAVPSTDTGAMLGICASVQPLTRTVGPTLGVILYKQFGVSSFGYLQLIVNAKIKKETLLYVLWHSCAGGTTLR", "length": 430 }, "evidence": [ { "id": "F1RYX1", "url": "https://omabrowser.org/oma/group/F1RYX1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q78KK3-1", "protein_name": "Solute carrier family 22 member 18", "gene_name": "Slc67a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALPRQGIIILTYVLAALELTCLFMQFSILPYLSRTLGLDSVSFGYLQTTFGVLQLLGGPVFGRFADQCGARAALSLSFLAASALYLLLVASCSPALPGVFLLFASRIPSALMHTLPAAQMVITDLTAPTERPAALGRLGLCFGIGIIFGSLLGGTLNTAYGIQCPAILAFVVTLLGAVLSFTCVPATTKEASVQSAPQGGTKASVFDLKAITRLLLLPRVLPVFLVKVISGLPSGLFLVMFSIISMDFFQLEAAQAGYLMSFFGILQMMIQGLVIGRLSTHFPEEALLRSSVLVFAVVGLGMALMSSVLHFCFLMPGLVFSLCTLNVVTDSMLTKAVSASDTGTMLGLSASVQPLTRTLGPTLGGLLYRSYGVPIFGHVQLMVNLLVLLVLWKKPLSQKGEKAR", "length": 406 }, "evidence": [ { "id": "F1RYX1", "url": "https://omabrowser.org/oma/group/F1RYX1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96BI1-1", "protein_name": "Solute carrier family 67 member A1", "gene_name": "SLC67A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGIQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIASLLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIGQLSSHFSEEVLLRASVLVFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLVLWRKPMPQRKDKVR", "length": 424 }, "evidence": [ { "id": "F1RYX1", "url": "https://omabrowser.org/oma/group/F1RYX1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1RYX1", "url": "https://www.uniprot.org/uniprotkb/F1RYX1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": 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"authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXC6-1", "uniprot_ac": "F1RXC6", "uniprot_id": "F1RXC6_PIG", "mass": { "chemical_mass": 73466.0, "monoisotopic_mass": 73466.0 }, "refseq": { "ac": "XP_003131535", "name": "rap guanine nucleotide exchange factor-like 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131535" }, "gene_names": [ { "name": "RAPGEFL1", "type": "recommended", "evidence": [ { "id": "F1RXC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" } ] }, { "name": "RAPGEFL1", "type": "synonym", "evidence": [ { "id": "XP_003131535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131535" } ] } ], "protein_names": [ { "name": "Rap guanine nucleotide exchange factor-like 1", "type": "recommended", "evidence": [ { "id": "F1RXC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXC6/entry#names_and_taxonomy" } ] }, { "name": "rap guanine nucleotide exchange factor-like 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003131535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131535" } ] } ], "function": [ { "annotation": "Probable guanine nucleotide exchange factor (GEF).", "evidence": [ { "database": "UniProtKB", "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6#function" }, { "database": "UniProtKB", "id": "ARBA00059863", "url": "https://www.uniprot.org/uniprotkb/ARBA00059863#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAPGEFL1", "url": "https://www.uniprot.org/uniprotkb/F1RXC6", "locus": { "chromosome": "12", "start_pos": 22181849, "end_pos": 22195840, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017478", "url": "https://www.ensembl.org/id/ENSSSCG00000017478" } ] } } ], "crossref": [ { "id": "F1RXC6", "url": "https://alphafold.ebi.ac.uk/entry/F1RXC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017478", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017478", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525075", "url": "https://www.ncbi.nlm.nih.gov/gene/100525075", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525075", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525075", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LQPNEDC", "url": "https://omabrowser.org/oma/group/LQPNEDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXC6", "url": "https://www.orthodb.org/?gene=F1RXC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113:SF230", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113:SF230", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131535", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXC6-1", "url": "https://www.uniprot.org/uniprotkb/F1RXC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPLEKFLKKQTSQLAGRTVAGGPGGGPGSCGGPGGGGGPGGGGGPTGGPRPLQRRQSVSRLLLPAFLREPPAEPGLEPPPEEDGGELAGVAEELSSRGPCWLQLEEVPGPGPLGGGGALRSPSSYSSDELSPGEPLPSPPWAPLGAPERPEHLLNRVLERLAGGATRDSAASDILLDDIVLTHSLFLPTEKFLQELHQYFVWAGGMEGPEGLGRKQACLAMLLHFLDTYQGLLQEEEGAGRIIKDLYLLIMKDESLYQDLREDTLRLHQLVETVELKIPEESQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVASSGEKVLLQPTEDCVFTTLGINSHLFACTRDSYEALVPLPEEIQVSPGDTEIHRGEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRAQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKSYREVISKMKPPVIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTVRKYRSRPLCLDMEASPHHLQTKAYVRQFQVIDNQNLLFELSYKLEANSQ", "length": 662, "header": "tr|F1RXC6-1|F1RXC6_PIG Isoform 1 of Rap guanine nucleotide exchange factor-like 1 OS=Sus scrofa OX=9823 GN=RAPGEFL1 PE=4 SV=3 CANONICAL=F1RXC6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ02/entry", "sequence": { "sequence": "MEGPEGLGRKQACLAMLLHFLDTYQGLLQEEEGAGRIIKDLYLLIMKDESLYQDLREDTLRLHQLVETVELKIPEESQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVASSGEKVLLQPTEDCVFTTLGINSHLFACTRDSYEALVPLPEEIQVSPGDTEIHRGEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRAQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKSYREVISKMKPPVIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTVRKYRSRPLCLDMEASPHHLQTKAYVRQFQVIDNQNLLFELSYKLEANSQ", "length": 456, "header": "tr|A0A5G2QQ02-1|F1RXC6_PIG Computationally mapped isoform of Rap guanine nucleotide exchange factor-like 1 OS=Sus scrofa OX=9823 GN=RAPGEFL1 PE=4 SV=1 CANONICAL=F1RXC6-1" }, "locus": { "chromosome": "12", "start_pos": 22190947, "end_pos": 22182994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089004.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089004.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060367.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060367.1" } ] } }, { "isoform_ac": "F1RXC6-1", "url": "https://www.uniprot.org/uniprotkb/F1RXC6/entry", "sequence": { "sequence": "MKPLEKFLKKQTSQLAGRTVAGGPGGGPGSCGGPGGGGGPGGGGGPTGGPRPLQRRQSVSRLLLPAFLREPPAEPGLEPPPEEDGGELAGVAEELSSRGPCWLQLEEVPGPGPLGGGGALRSPSSYSSDELSPGEPLPSPPWAPLGAPERPEHLLNRVLERLAGGATRDSAASDILLDDIVLTHSLFLPTEKFLQELHQYFVWAGGMEGPEGLGRKQACLAMLLHFLDTYQGLLQEEEGAGRIIKDLYLLIMKDESLYQDLREDTLRLHQLVETVELKIPEESQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVASSGEKVLLQPTEDCVFTTLGINSHLFACTRDSYEALVPLPEEIQVSPGDTEIHRGEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRAQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKSYREVISKMKPPVIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTVRKYRSRPLCLDMEASPHHLQTKAYVRQFQVIDNQNLLFELSYKLEANSQ", "length": 662, "header": "tr|F1RXC6-1|F1RXC6_PIG Isoform 1 of Rap guanine nucleotide exchange factor-like 1 OS=Sus scrofa OX=9823 GN=RAPGEFL1 PE=4 SV=3 CANONICAL=F1RXC6-1" }, "locus": { "chromosome": "12", "start_pos": 22195446, "end_pos": 22182994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019029.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019029.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018524.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018524.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 47, "start_aa": "Thr", "end_pos": 47, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr47", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ02", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ02" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525075", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525075", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8XFA0-1", "protein_name": "Rap guanine nucleotide exchange factor like 1", "gene_name": "Rapgefl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKPLEKFLKKQTSQLAGRAVAGGPGGGPGCCGGPGGGGGSGGGGGPTGGLRPLQRRQSVSRLLLPAFLREHPTDPGLEPPVEEEGGEPLGVSEEPGSGGPCWLQLEEVPGPGPIGSGVPLRSPSSYSSDELSPGEPLASPPWAPLGAPERPEHLLNRVLERLAGGTTRDSSSASDILLDDIVLTHSLFLPTEKFLQELHQYFVQSKNVEGPEGLGRKQACLALLLHFLDTYQGLLQEEEGAGHIIKELYLLIMKDESLYQDLREDTLRLHQLVETVELKIPEESQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAEREDALILVAVASSGEKVLLQPTEDCVFTTLGINSHLFACTRDSYEALVPLPEEIQASPGDTEIHRVEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRVQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFESLTDPCRNHKSYREVISKMKPPLIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTIRKYRSRPLCLDMEASPHHLQTKAYVRQFQVIDNQNHLFELSYKLEANSQ", "length": 663 }, "evidence": [ { "id": "F1RXC6", "url": "https://omabrowser.org/oma/group/F1RXC6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FGN2-1", "protein_name": "Rap guanine nucleotide exchange factor-like 1", "gene_name": "rapgefl1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPAGMKPLEKFLKKQTNALTRAGGFGEKATGTGASRRRASLSRVVPFFRETSPESGPAREVFSPETEEAPCWPSATADIRSPSLSSDEQSSEASLDTNWTPLPADTPENLALALLDSVAGKRYANCTEILLDDFMLTHPIFLAPDKFQQVLLQQFSSEGKQGEGWPGWDGAERKLAVLTVAFRYLDTYRDLLQEEGDRSNTFPKELYLCAVDELNRFPELVEDVLKLQRWTEILHSPAEEDKESRKKQVRPLFRHFRRIDACLQPREAFRGSDEIFCRVYTPDHSYVTIRSRLSCRVGEILALVKEKLQYSEDQPTQPANLILVAVTSSGEKAVFRPSDEAVFTTLGVNTHLFACEPAELESLIPLPEEIHWTPGDSKLHDMSAEEVANQLVVFDWELFSCVHEVEFVCYVFHGEQARWRPLNLELILQRCSEVQHWVATEILQCQSLPKRIQLLRKFIKIAALCKQQQDLLSFLALVLGLDNPAVSRLRLTWEGLPGKFRKQFQQFESIADPSRNHKSYRDLLASLRAPLIPFTPLLLKDLTFLHESCKTFHGELVNFEKMHKVAEMVRSIRRYRSSQLAMEAEPSPSHLQTKAYVRQLQVIDNQNLLFEMSSKLEPKDM", "length": 621 }, "evidence": [ { "id": "F1RXC6", "url": "https://omabrowser.org/oma/group/F1RXC6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68EF8-1", "protein_name": "Rap guanine nucleotide exchange factor-like 1", "gene_name": "Rapgefl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPLEKFLKKQTSQLAGRAVTGGPGGGPGCCGGPGGGGGPGGGGGPAGGLRPLQRRQSVSRLLLPAFLREPPTEPGLEPPVEEEGGEPLGVSEEPGSGGPCWLQLEEVPGPGPIGSGVPLRSPSSYSSDELSPGEPLASPPWAPLGAPERPEHLLNRVLERLAGGTTRDSSASDILLDDIVLTHSLFLPTEKFLQELHQYFVQSRNVEGPEGLGRKQACLALLLHFLDTYQGLLQEEEGAGHIIKELYLLIMKDESLYQDLREDTLRLHQLVETVELKIPEESQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAEREDALILVAVASSGEKVLLQPTEDCVFTTLGINSHLFACTRDSYEALVPLPEEVQVSPGDTEIHRVEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRVQLLKKFIKIAAICKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFEGLTDPCRNHKSYREVISKMKPPLIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTIRKYRSRPLCLDMEASPHHLQTKAYVRQFQVIDNQNHLFELSYKLEANSQ", "length": 662 }, "evidence": [ { "id": "F1RXC6", "url": "https://omabrowser.org/oma/group/F1RXC6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UHV5-1", "protein_name": "Rap guanine nucleotide exchange factor-like 1", "gene_name": "RAPGEFL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKPLEKFLKKQTSQLAGRTVAGGPGGGLGSCGGPGGGGGPGGGGGPAGGQRSLQRRQSVSRLLLPAFLREPPAEPGLEPPVPEEGGEPAGVAEEPGSGGPCWLQLEEVPGPGPLGGGGPLRSPSSYSSDELSPGEPLTSPPWAPLGAPERPEHLLNRVLERLAGGATRDSAASDILLDDIVLTHSLFLPTEKFLQELHQYFVRAGGMEGPEGLGRKQACLAMLLHFLDTYQGLLQEEEGAGHIIKDLYLLIMKDESLYQGLREDTLRLHQLVETVELKIPEENQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTRDSYEALVPLPEEIQVSPGDTEIHRVEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRAQLLKKFIKIAALCKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKSYREVISKMKPPVIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTIRKYRSRPLCLDMEASPNHLQTKAYVRQFQVIDNQNLLFELSYKLEANSQ", "length": 662 }, "evidence": [ { "id": "F1RXC6", "url": "https://omabrowser.org/oma/group/F1RXC6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" } ], "pmid": "" }, { "name": "Rap protein signal transduction", "id": "GO:0032486", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032486", "evidence": [ { "database": "UniProtKB", "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RXC6", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RXC6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 662, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RXC6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RXC6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXC6" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 424, "end_pos": 660, "start_aa": "Glu", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 47 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 550, "end_pos": 552 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RYI5-1", "uniprot_ac": "F1RYI5", "uniprot_id": "F1RYI5_PIG", "mass": { "chemical_mass": 58638.0, "monoisotopic_mass": 58638.0 }, "refseq": {}, "gene_names": [ { "name": "TBC1D22A", "type": "recommended", "evidence": [ { "id": "F1RYI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 22A", "type": "synonym", "evidence": [ { "id": "F1RYI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYI5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May act as a GTPase-activating protein for Rab family protein(s).", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU2#function" }, { "database": "UniProtKB", "id": "ARBA00043879", "url": "https://www.uniprot.org/uniprotkb/ARBA00043879#function" }, { "database": "UniProtKB", "id": "A0A5G2RI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI37#function" }, { "database": "UniProtKB", "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D22A", "url": "https://www.uniprot.org/uniprotkb/F1RYI5", "locus": { "chromosome": "5", "start_pos": 2528921, "end_pos": 2787304, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000955", "url": "https://www.ensembl.org/id/ENSSSCG00000000955" } ] } } ], "crossref": [ { "id": "F1RYI5", "url": "https://alphafold.ebi.ac.uk/entry/F1RYI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000955", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000955", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22957:SF255", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22957:SF255", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RI37", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RI37-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYI5-1", "url": "https://www.uniprot.org/uniprotkb/F1RYI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASDGTRKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKAAPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSAVVMETAHRVLRNHSQRGPPPAREAAEPEQTPEPSPEPPVVPSGDLRLVKSVSESHASSPPGSASATVPLRRSPSLPSSATVTLGVSDPSALSSSALSERDASRLDKFRQLLGGPNTDLEELRKLSWSGVPKPVRAVTWKLLSGYLPANVDRRPATLQRKQKEYFAFIDHYYDSRNDEVHQDTYRQIHIDIPRMSPEALVLQPKVTEIFERILFIWAIRHPASGYVQGMNDLVIPFFVVFLCEHTDDEDVDTADVSRVPEDVLRNVEADTYWCLSRLLDGIQDNYTFAQPGIQMKVKMLEELVRRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPEGFAHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWGDEDISLLLAEAYRLKFAFADAPNHYKK", "length": 515, "header": "tr|F1RYI5-1|F1RYI5_PIG Isoform 1 of TBC1 domain family member 22A OS=Sus scrofa OX=9823 GN=TBC1D22A PE=4 SV=4 CANONICAL=F1RYI5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU2/entry", "sequence": { "sequence": "MASDGTRKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKAAPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSAVVMETAHRVLRNHSQRGPPPAREAAEPEQTPEPSPEPPVVPSGDLRLVKSVSESHASSPPEELRKLSWSGVPKPVRAVTWKLLSGYLPANVDRRPATLQRKQKEYFAFIDHYYDSRNDEVHQDTYRQIHIDIPRMSPEALVLQPKVTEIFERILFIWAIRHPASGYVQGMNDLVIPFFVVFLCEHTDDEDVDTADVSRVPEDVLRNVEADTYWCLSRLLDGIQDNYTFAQPGIQMKVKMLEELVRRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPEGFAHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWGDEDISLLLAEAYRLKFAFADAPNHYKK", "length": 457, "header": "tr|A0A5G2QQU2-1|F1RYI5_PIG Computationally mapped isoform of TBC1 domain family member 22A OS=Sus scrofa OX=9823 GN=TBC1D22A PE=4 SV=1 CANONICAL=F1RYI5-1" }, "locus": { "chromosome": "5", "start_pos": 2787149, "end_pos": 2530534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083688.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083688.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060649.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060649.1" } ] } }, { "isoform_ac": "A0A5G2RI37-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI37/entry", "sequence": { "sequence": "MASDGTRKQFWKRSNSKVPGSLLKAAPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSAVVMETAHRVLRNHSQRGPPPAREAAEPEQTPEPSPEPPVVPSGDLRLVKSVSESHASSPPEELRKLSWSGVPKPVRAVTWKLLSGYLPANVDRRPATLQRKQKEYFAFIDHYYDSRNDEVHQDTYRQIHIDIPRMSPEALVLQPKVTEIFERILFIWAIRHPASGYVQGMNDLVIPFFVVFLCEHTDDEDVDTADVSRVPEDVLRNVEADTYWCLSRLLDGIQDNYTFAQPGIQMKVKMLEELVRRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPEGFAHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWGDEDISLLLAEAYRLKFAFADAPNHYKK", "length": 438, "header": "tr|A0A5G2RI37-1|F1RYI5_PIG Computationally mapped isoform of TBC1 domain family member 22A OS=Sus scrofa OX=9823 GN=TBC1D22A PE=4 SV=1 CANONICAL=F1RYI5-1" }, "locus": { "chromosome": "5", "start_pos": 2787149, "end_pos": 2530534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079994.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079994.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071147.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071147.1" } ] } }, { "isoform_ac": "F1RYI5-1", "url": "https://www.uniprot.org/uniprotkb/F1RYI5/entry", "sequence": { "sequence": "MASDGTRKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKAAPKVPTTPVKAKRVSTFQEFESNTSDAWDAGEDDDELLAMAAESLNSAVVMETAHRVLRNHSQRGPPPAREAAEPEQTPEPSPEPPVVPSGDLRLVKSVSESHASSPPGSASATVPLRRSPSLPSSATVTLGVSDPSALSSSALSERDASRLDKFRQLLGGPNTDLEELRKLSWSGVPKPVRAVTWKLLSGYLPANVDRRPATLQRKQKEYFAFIDHYYDSRNDEVHQDTYRQIHIDIPRMSPEALVLQPKVTEIFERILFIWAIRHPASGYVQGMNDLVIPFFVVFLCEHTDDEDVDTADVSRVPEDVLRNVEADTYWCLSRLLDGIQDNYTFAQPGIQMKVKMLEELVRRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPEGFAHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWGDEDISLLLAEAYRLKFAFADAPNHYKK", "length": 515, "header": "tr|F1RYI5-1|F1RYI5_PIG Isoform 1 of TBC1 domain family member 22A OS=Sus scrofa OX=9823 GN=TBC1D22A PE=4 SV=4 CANONICAL=F1RYI5-1" }, "locus": { "chromosome": "5", "start_pos": 2787149, "end_pos": 2530534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001044.4", "url": "https://www.ensembl.org/id/ENSSSCT00000001044.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001022.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001022.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" } ], "pmid": "" }, { "name": "14-3-3 protein binding", "id": "GO:0071889", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071889", "evidence": [ { "database": "UniProtKB", "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1RYI5", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RYI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 515, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RYI5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RYI5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RYI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYI5" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 220, "end_pos": 444, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RWK9-1", "uniprot_ac": "F1RWK9", "uniprot_id": "F1RWK9_PIG", "mass": { "chemical_mass": 44130.0, "monoisotopic_mass": 44130.0 }, "refseq": { "ac": "XP_013835317", "name": "SH3 and cysteine-rich domain-containing protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835317" }, "gene_names": [ { "name": "STAC2", "type": "recommended", "evidence": [ { "id": "F1RWK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK9" } ] }, { "name": "STAC2", "type": "synonym", "evidence": [ { "id": "XP_013835317", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835317" } ] } ], "protein_names": [ { "name": "SH3 and cysteine-rich domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "F1RWK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK9/entry#names_and_taxonomy" } ] }, { "name": "24b2/STAC2", "type": "synonym", "evidence": [ { "id": "F1RWK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK9/entry#names_and_taxonomy" } ] }, { "name": "SH3 and cysteine-rich domain-containing protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_013835317", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835317" } ] }, { "name": "Src homology 3 and cysteine-rich domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1RWK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a redundant role in promoting the expression of calcium channel CACNA1S at the cell membrane, and thereby contributes to increased channel activity. Slows down the inactivation rate of the calcium channel CACNA1C.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RAY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAY3#function" }, { "database": "UniProtKB", "id": "ARBA00054848", "url": "https://www.uniprot.org/uniprotkb/ARBA00054848#function" }, { "database": "UniProtKB", "id": "A0A287BFP5", "url": "https://www.uniprot.org/uniprotkb/A0A287BFP5#function" }, { "database": "UniProtKB", "id": "F1RWK9", "url": "https://www.uniprot.org/uniprotkb/F1RWK9#function" }, { "database": "UniProtKB", "id": "A0A5G2QQY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RWK9", "url": "https://www.uniprot.org/uniprotkb/F1RWK9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STAC2", "url": "https://www.uniprot.org/uniprotkb/F1RWK9", "locus": { "chromosome": "12", "start_pos": 23022207, "end_pos": 23004636, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017508", "url": "https://www.ensembl.org/id/ENSSSCG00000017508" } ] } } ], "crossref": [ { "id": "F1RWK9", "url": "https://alphafold.ebi.ac.uk/entry/F1RWK9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017508", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017508", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11985", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11985", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20881", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20881", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514486", "url": "https://www.ncbi.nlm.nih.gov/gene/100514486", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039688", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039688", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RWK9", "url": "https://www.orthodb.org/?gene=F1RWK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15135", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15135", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15135:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15135:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013835317", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013835317", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BFP5", "url": "https://www.uniprot.org/uniprotkb/A0A287BFP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BFP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFP5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQY0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWK9", "url": "https://www.uniprot.org/uniprotkb/F1RWK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWK9-1", "url": "https://www.uniprot.org/uniprotkb/F1RWK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGREEGAVLSLPAPQTSGQDSPLPATLLQRFKRSLSLKTILRSKSMENFFLRSGSELKCPTEVLLTPPTPLPPPSPPPTSTDGGLSTPAPSPCPIPRPLAPVKPVRLHSFQEHVFKRASPCELCHQLIVGNSKQALRCKTCKVSVHLWCSEEISHQQCPGKTSSSFRRNFSSPLLVHEPPPACATSRESPPTGAIGKVDPVYETLRYGTSLALMNRSSFSSTSESPTQSLSERDELTEDGEGSIRSSEDGAGDSVFTAPAESEGSGPEEKSPGQQPPRLPLRKDVGPMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPGENVWRCCQPFSGNKEQGYMSLKENQICVGVGRTKDADGFIRVSSGKKRGLVPADALTEI", "length": 405, "header": "tr|F1RWK9-1|F1RWK9_PIG Isoform 1 of SH3 and cysteine-rich domain-containing protein 2 OS=Sus scrofa OX=9823 GN=STAC2 PE=1 SV=4 CANONICAL=F1RWK9-1" }, "isoforms": [ { "isoform_ac": "A0A287BFP5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BFP5/entry", "sequence": { "sequence": "MTEMSEKENEPDDAATHTHPGTVSALQETKLQRFKRSLSLKTILRSKSMENFFLRSGSELKCPTEVLLTPPTPLPPPSPPPTSTDGGLSTPAPSPCPIPRPLAPVKPVRLHSFQEHVFKRASPCELCHQLIVGNSKQALRCKTCKVSVHLWCSEEISHQQCPGKTVSGHQVEMAGPVLPGLACTGMNALQGAIGKVDPVYETLRYGTSLALMNRSSFSSTSESPTQSLSERDELTEDGEGSIRSSEDGAGDSGEWDWGPGAGMEHQCSALPAASHPGPALASPVFTAPAESEGSGPEEKSPGQQPPRLPLRKDVGPMYSYVALYKFLPQENNDLALQPGDRIMLVDDSNEDWWKGKIGDRVGFFPANFVQRVRPGENVWRCCQPFSGNKEQGYMSLKENQVRARALPGWSGGPGREAAGVRASALEEAACSLAARREGRLEAAGLRAGPSCHPCWEWGAGGQHRWGLNYVRNSWGSPGLGAQRPGFECRLRLWVAVLFLVTSAKWEFGRGVGRAPLKGQLLSVC", "length": 524, "header": "tr|A0A287BFP5-1|A0A287BFP5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 2 OS=Sus scrofa OX=9823 GN=STAC2 PE=1 SV=3 CANONICAL=F1RWK9-1" }, "locus": { "chromosome": "12", "start_pos": 23020450, "end_pos": 23005101, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042738.3", "url": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RRA7-1", "uniprot_ac": "F1RRA7", "uniprot_id": "F1RRA7_PIG", "mass": { "chemical_mass": 94576.0, "monoisotopic_mass": 94576.0 }, "refseq": {}, "gene_names": [ { "name": "HSPA4L", "type": "recommended", "evidence": [ { "id": "F1RRA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ] } ], "protein_names": [ { "name": "Heat shock 70 kDa protein 4L", "type": "recommended", "evidence": [ { "id": "F1RRA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRA7/entry#names_and_taxonomy" } ] }, { "name": "Heat shock 70-related protein APG-1", "type": "synonym", "evidence": [ { "id": "F1RRA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRA7/entry#names_and_taxonomy" } ] }, { "name": "Osmotic stress protein 94", "type": "synonym", "evidence": [ { "id": "F1RRA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRA7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Possesses chaperone activity in vitro where it inhibits aggregation of citrate synthase.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZIK8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIK8#function" }, { "database": "UniProtKB", "id": "ARBA00054497", "url": "https://www.uniprot.org/uniprotkb/ARBA00054497#function" }, { "database": "UniProtKB", "id": "A0A287AGN3", "url": "https://www.uniprot.org/uniprotkb/A0A287AGN3#function" }, { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7#function" }, { "database": "UniProtKB", "id": "A0A5G2QSN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSN4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HSPA4L", "url": "https://www.uniprot.org/uniprotkb/F1RRA7", "locus": { "chromosome": "8", "start_pos": 97032189, "end_pos": 97089949, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009077", "url": "https://www.ensembl.org/id/ENSSSCG00000009077" } ] } } ], "crossref": [ { "id": "F1RRA7", "url": "https://alphafold.ebi.ac.uk/entry/F1RRA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009077", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009077", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11738", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11738", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR013126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45639:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45639:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00012", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00012", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3371453", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZIK8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGN3", "url": "https://www.uniprot.org/uniprotkb/A0A287AGN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRA7-1", "url": "https://www.uniprot.org/uniprotkb/F1RRA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVAVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKSKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLFARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGIGECEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDPRIGIFTIQNVFPQSDGDSSKVKVKVRINIHGIFSVASASVIEKQNVEGDHSDIPMETETSFKNESKDDVDKMQVDQEEGGHQKCHAEHTPEEEIDHTGTKSKSAPSDKPERLNQTIKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDKLGTVYEKFITQEDLNKLSAILEDTENWLYEEGEDQPKQIYVDKLQELKKYGQPIQMRYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPAEVEKVEKFISEAMSWLNSKMNAQNKLSLTQDPVVKVAEIVAKSKELDNFCNIIYKPKPKVEVAEDKAKANSEHNGPMDGQSGSETKPDTTKDSSQHTKSSGEMEVD", "length": 839, "header": "tr|F1RRA7-1|F1RRA7_PIG Isoform 1 of Heat shock 70 kDa protein 4L OS=Sus scrofa OX=9823 GN=HSPA4L PE=1 SV=4 CANONICAL=F1RRA7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIK8/entry", "sequence": { "sequence": "MCSFGFHTKHHSLRREKAWDRRRPLGRGEAATVRTMGATSQSQAWRAGGEVAQTDCQRAGLRHMAPSGRRGRRVGAGAAERPSEGKSEAAAPGQHPPAGASDSGSRNSRSNSPNEDAVPAQRASAPSPRPLGGGMSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVAVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKSKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLFARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGIGECEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDPRIGIFTIQNVFPQSDGDSSKVKVKVRINIHGIFSVASASVIEKQNVEGDHSDIPMETETSFKNESKDDVDKMQVDQEEGGHQKCHAEHTPEEEIDHTGTKSKSAPSDKPERLNQTIKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDKLGTVYEKFITQEDLNKLSAILEDTENWLYEEGEDQPKQIYVDKLQELKKYGQPIQMRYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPAEVEKVEKFISEAMSWLNSKMNAQNKLSLTQDPVVKVAEIVAKSKELDNFCNPSFTSPNRK", "length": 927, "header": "tr|A0A286ZIK8-1|F1RRA7_PIG Computationally mapped isoform of Heat shock 70 kDa protein 4L OS=Sus scrofa OX=9823 GN=HSPA4L PE=1 SV=2 CANONICAL=F1RRA7-1" }, "locus": { "chromosome": "8", "start_pos": 97088971, "end_pos": 97037954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037656.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037656.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031277.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031277.2" } ] } }, { "isoform_ac": "A0A287AGN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGN3/entry", "sequence": { "sequence": "MDFMFLIATAAGAIATLVAAAVAALIVVKSLSSFKKRTNKDNERTKKPRKKVSFMIPTNRKQETHDKLGKKEKKSHKELGEKEQAIQEDLNVKEQKHEELDDKEQETHEELNSKVQKTYEKLNKEHETHREKNESQTSSRNSRSNSPNEDAVPAQRASAPSPRPLGGGMSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVAVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKSKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLFARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGIGECEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDPRIGIFTIQNVFPQSDGDSSKVKVKVRINIHGIFSVASASVIEKQNVEGDHSDIPMETETSFKNESKDDVDKMQVDQEEGGHQKCHAEHTPEEEIDHTGTKSKSAPSDKPERLNQTIKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDKLGTVYEKFITQEDLNKLSAILEDTENWLYEEGEDQPKQIYVDKLQELKKYGQPIQMRYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPAEVEKVEKFISEAMSWLNSKMNAQNKLSLTQDPVVKVAEIVAKSKEFEANPTILKKNLKKDV", "length": 962, "header": "tr|A0A287AGN3-1|A0A287AGN3_PIG Computationally mapped isoform of Heat shock 70 kDa protein 4L OS=Sus scrofa OX=9823 GN=HSPA4L PE=1 SV=2 CANONICAL=F1RRA7-1" }, "locus": { "chromosome": "8", "start_pos": 97089750, "end_pos": 97040889, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050624.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050624.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043066.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043066.2" } ] } }, { "isoform_ac": "A0A5G2QSN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSN4/entry", "sequence": { "sequence": "MDFMFLIATAAGAIATLVAAAVAALIVVKSLSSFKKRTNKDNERTKKPRKKVSFMIPTNRKQETHDKLGKKEKKSHKELGEKEQAIQEDLNVKEQKHEELDDKEQETHEELNSKVQKTYEKLNKEHETHREKNESQTSSRNSRSNSPNEDAVPAQRASAPSPRPLGGGMSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVAVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKSKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLFARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGIGECEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDPRIGIFTIQNVFPQSDGDSSKVKVKVRINIHGIFSVASASVIEKQNVEGDHSDIPMETETSFKNESKDDVDKMQVDQEEGGHQKCHAEHTPEEEIDHTGTKSKSAPSDKPERLNQTIKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDKLGTVYEKFITQEDLNKLSAILEDTENWLYEEGEDQPKQIYVDKLQELKKYGQPIQMRYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPAEVEKVEKFISEAMSWLNSKMNAQNKLSLTQDPVVKVAEIVAKSKELDNFCNPSFTSPNRK", "length": 961, "header": "tr|A0A5G2QSN4-1|F1RRA7_PIG Computationally mapped isoform of Heat shock 70 kDa protein 4L OS=Sus scrofa OX=9823 GN=HSPA4L PE=1 SV=1 CANONICAL=F1RRA7-1" }, "locus": { "chromosome": "8", "start_pos": 97089750, "end_pos": 97037954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087485.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087485.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065012.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065012.1" } ] } }, { "isoform_ac": "F1RRA7-1", "url": "https://www.uniprot.org/uniprotkb/F1RRA7/entry", "sequence": { "sequence": "MSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVAVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKSKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLFARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGIGECEVFCKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDPRIGIFTIQNVFPQSDGDSSKVKVKVRINIHGIFSVASASVIEKQNVEGDHSDIPMETETSFKNESKDDVDKMQVDQEEGGHQKCHAEHTPEEEIDHTGTKSKSAPSDKPERLNQTIKKGKVKSIDLPIQSSLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDKLGTVYEKFITQEDLNKLSAILEDTENWLYEEGEDQPKQIYVDKLQELKKYGQPIQMRYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERYDHLDPAEVEKVEKFISEAMSWLNSKMNAQNKLSLTQDPVVKVAEIVAKSKELDNFCNIIYKPKPKVEVAEDKAKANSEHNGPMDGQSGSETKPDTTKDSSQHTKSSGEMEVD", "length": 839, "header": "tr|F1RRA7-1|F1RRA7_PIG Isoform 1 of Heat shock 70 kDa protein 4L OS=Sus scrofa OX=9823 GN=HSPA4L PE=1 SV=4 CANONICAL=F1RRA7-1" }, "locus": { "chromosome": "8", "start_pos": 97088009, "end_pos": 97037814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009943.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009943.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009687.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009687.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3371453", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "resource": "Reactome", "description": "Regulation of HSF1-mediated heat shock response" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" }, { "name": "adenyl-nucleotide exchange factor activity", "id": "GO:0000774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000774", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1RRA7", "url": "https://www.uniprot.org/uniprotkb/F1RRA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], 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"yes" } }, { "uniprot_canonical_ac": "F1RT22-1", "uniprot_ac": "F1RT22", "uniprot_id": "F1RT22_PIG", "mass": { "chemical_mass": 96114.0, "monoisotopic_mass": 96114.0 }, "refseq": {}, "gene_names": [ { "name": "ARMC2", "type": "recommended", "evidence": [ { "id": "F1RT22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RT22" } ] } ], "protein_names": [ { "name": "Armadillo repeat containing 2", "type": "synonym", "evidence": [ { "id": "F1RT22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RT22/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RT22", "url": "https://www.uniprot.org/uniprotkb/F1RT22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARMC2", "url": "https://www.uniprot.org/uniprotkb/F1RT22", "locus": { "chromosome": "1", "start_pos": 75043060, "end_pos": 74923868, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004388", "url": "https://www.ensembl.org/id/ENSSSCG00000004388" } ] } } ], "crossref": [ { "id": "F1RT22", "url": "https://alphafold.ebi.ac.uk/entry/F1RT22", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004388", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004388", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523341", "url": "https://www.ncbi.nlm.nih.gov/gene/100523341", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523341", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523341", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZL72", "url": "https://www.orthodb.org/?gene=A0A286ZL72", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21356", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21356", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21356:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21356:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZL72", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZL72-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT22", "url": "https://www.uniprot.org/uniprotkb/F1RT22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT22-1", "url": "https://www.uniprot.org/uniprotkb/F1RT22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSPNDRKLEKLDPFYRSPVSKQKTSAEIISEARNALRTVRTQRPFTPREEQRKLFGPASSRTPESRPPSSFSVHASSFESSDSRPISGTRLSPLELKPKAPASPATEEDPCPSFPKPPVDPVKIRRISSARARLFRAASQGALLPDRTLPPAQSKKRVEPKETVMMGDSVMKRNGLYLAESNAIGQLKLPYDADFSEIKEREMFQGATSMPSHLRSGGDQGRRHLRASSCPNSSGWSRLDTRAASQAELQEKDTEVEVDAFWNTRIVPILHALEKEENIETVCAACTQLHLALEEGNMLGNKFKRRSILLKTLYKLVDVGSDLLSLKLAKIILALKVSGKNLLNVCKLIFKISRSEKNDSLIQNDSILESLLEVLRSEDLQANTEAFLYCLGTIKFISGNPGFLHEMISKGAVEILMNLIKQINENTKKSGTCLPNSGHLLVQVTATLRNLVDSPLARSKFLSISALPQLCTVMGQYMGDKDVCTNIARIFSKLTTYHDCCVALANYSRCYALFLNLINKYQKKQDLIVRIIFILGNLTAKNNLAREQFSKVKGSIPTLLSLFHTFHELDLHSRKPLGEGEERSKAPRRPAQAEDVLIKLTRVLANLAIHPGVGPAIATQPRIVGLLLATLEYKSIDECEELVINTMATINNLSYYQVKNSVIQDKKLYIAELLIKLLVSNNMDGILEAVRVFGNLSQDRDICDFIVQKNVHKFMIALLDAKHQDICFSACGVLLNLTVDKDKRAILKEGGGIQKLVDCLRDVGPTDWQLACLVCKTLWNFSENITNASSCFGDEATNTLLALLSSFLDEELALDGSFDQDLKHYHKLHWETEFKPVAQQLLNRIQSHHTFLEPLPIPSF", "length": 861, "header": "tr|F1RT22-1|F1RT22_PIG Isoform 1 of Armadillo repeat containing 2 OS=Sus scrofa OX=9823 GN=ARMC2 PE=4 SV=4 CANONICAL=F1RT22-1" }, "isoforms": [ { "isoform_ac": "A0A286ZL72-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL72/entry", "sequence": { "sequence": "MLSPNDRKLEKLDPFYRSPVSKQKTSAEIISEARNALRTVRTQRPFTPREEQRKLFGPASSRTPESRPPSSFSVHASSFESSDSRPISGTRLSPLELKPKAPASPATEEDPCPSFPKPPVDPVKIRRISSARARLFRAASQGALLPDRTLPPAQSKKRVEPKETVMMGDSVMKRNGLYLAESNAIGQLKLPYDADFSEIKEREMFQGATSMPSHLRSGGDQGRRHLRASSCPNSSGWSRLDTRAGVIQVHERIWKIQEHTREASQAELQEKDTEVEVDAFWNTRIVPILHALEKEENIETVCAACTQLHLALEEGNMLGNKFKRRSILLKTLYKLVDVGSDLLSLKLAKIILALKVSGKNLLNVCKLIFKISRSEKNDSLIQNDSILESLLEVLRSEDLQANTEAFLYCLGTIKFISGNPGFLHEMISKGAVEILMNLIKQINENTKKSGTCLPNSGHLLVQVTATLRNLVDSPLARSKFLSISALPQLCTVMGQYMGDKDVCTNIARIFSKLTTYHDCCVALANYSRCYALFLNLINKYQKKQDLIVRIIFILGNLTAKNNLAREQFSKVKGSIPTLLSLFHTFHELDLHSRKPLGEGEERSKAPRRPAQAEDVLIKLTRVLANLAIHPGVGPAIATQPRIVGLLLATLEYKSIDECEELVINTMATINNLSYYQVKNSVIQDKKLYIAELLIKLLVSNNMDGILEAVRVFGNLSQDRDICDFIVQKNVHKFMIALLDAKHQDICFSACGVLLNLTVDKDKRAILKEGGGIQKLVDCLRDVGPTDWQLACLVCKTLWNFSENITNASSCFGDEATNTLLALLSSFLDEELALDGSFDQDLKHYHKLHWETEFKPVAQQLLNRIQSHHTFLEPLPIPSF", "length": 879, "header": "tr|A0A286ZL72-1|F1RT22_PIG Computationally mapped isoform of Armadillo repeat containing 2 OS=Sus scrofa OX=9823 GN=ARMC2 PE=4 SV=2 CANONICAL=F1RT22-1" }, "locus": { "chromosome": "1", "start_pos": 75041598, "end_pos": 74930343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056166.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056166.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032191.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032191.2" } ] } }, { "isoform_ac": "A0A5G2QSS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS5/entry", "sequence": { "sequence": "MLSPNDRKLEKLDPFYRSPVSKQKTSAEIISEARNALRTVRTQRPFTPREEQRKLFGPASSRTPESRPPSSFSVHASSFESSDSRPISGTRLSPLELKPKAPASPATEEDPCPSFPKPPVDPVKIRRISSARARLFRAASQGALLPDRTLPPAQSKKRVEPKETVMMGDSVMKRNGLYLAESNAIGQLKLPYDADFSEIKEREMFQGATSMPSHLRSGGDQGRRHLRASSCPNSSGWSRLDTRAGVIQVHERIWKIQEHTREASQAELQEKDTEVEVDAFWNTRIVPILHALEKEENIETVCAACTQLHLALEEGNMLGNKFKRRSILLKTLYKLVDVGSDLLSLKLAKIILALKVSGKNLLNVCKLIFKISRSEKNDSLIQNDSILESLLEVLRSEDLQANTEAFLYCLGTIKFISGNPGFLHEMISKGAVEILMNLIKQINENTKKSGTCLPNSGHLLVQVTATLRNLVDSPLARSKFLSISALPQLCTVMGQYMGDKDVCTNIARIFSKLTTYHDCCVALANYSRCYALFLNLINKYQKKQDLIVRIIFILGNLTAKNNLAREQFSKVKGSIPTLLSLFHTFHELDLHSRKPLGEGEERSKAPRRPAQAEDVLIKLTRVLANLAIHPGVGPAIATQPRIVGLLLATLEYKSIDECEELVINTMATINNLSYYQVKNSVIQDKKLYIAELLIKLLVSNNMDGILEAVRVFGNLSQDRDICDFIVQKNVHKFMIALLDAKHQDICFSACGVLLNLTVDKDKRAILKEGGGIQKLVDCLRDVGPTDWQLACLVCKTLWNFSENITNASSCFGDEATNTLLALLSSFLGPHPQHMEVPRLGVKSEL", "length": 845, "header": "tr|A0A5G2QSS5-1|F1RT22_PIG Computationally mapped isoform of Armadillo repeat containing 2 OS=Sus scrofa OX=9823 GN=ARMC2 PE=4 SV=1 CANONICAL=F1RT22-1" }, "locus": { "chromosome": "1", "start_pos": 75033683, "end_pos": 74930343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078940.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078940.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067882.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067882.1" } ] } }, { "isoform_ac": "F1RT22-1", "url": "https://www.uniprot.org/uniprotkb/F1RT22/entry", "sequence": { "sequence": "MLSPNDRKLEKLDPFYRSPVSKQKTSAEIISEARNALRTVRTQRPFTPREEQRKLFGPASSRTPESRPPSSFSVHASSFESSDSRPISGTRLSPLELKPKAPASPATEEDPCPSFPKPPVDPVKIRRISSARARLFRAASQGALLPDRTLPPAQSKKRVEPKETVMMGDSVMKRNGLYLAESNAIGQLKLPYDADFSEIKEREMFQGATSMPSHLRSGGDQGRRHLRASSCPNSSGWSRLDTRAASQAELQEKDTEVEVDAFWNTRIVPILHALEKEENIETVCAACTQLHLALEEGNMLGNKFKRRSILLKTLYKLVDVGSDLLSLKLAKIILALKVSGKNLLNVCKLIFKISRSEKNDSLIQNDSILESLLEVLRSEDLQANTEAFLYCLGTIKFISGNPGFLHEMISKGAVEILMNLIKQINENTKKSGTCLPNSGHLLVQVTATLRNLVDSPLARSKFLSISALPQLCTVMGQYMGDKDVCTNIARIFSKLTTYHDCCVALANYSRCYALFLNLINKYQKKQDLIVRIIFILGNLTAKNNLAREQFSKVKGSIPTLLSLFHTFHELDLHSRKPLGEGEERSKAPRRPAQAEDVLIKLTRVLANLAIHPGVGPAIATQPRIVGLLLATLEYKSIDECEELVINTMATINNLSYYQVKNSVIQDKKLYIAELLIKLLVSNNMDGILEAVRVFGNLSQDRDICDFIVQKNVHKFMIALLDAKHQDICFSACGVLLNLTVDKDKRAILKEGGGIQKLVDCLRDVGPTDWQLACLVCKTLWNFSENITNASSCFGDEATNTLLALLSSFLDEELALDGSFDQDLKHYHKLHWETEFKPVAQQLLNRIQSHHTFLEPLPIPSF", "length": 861, "header": "tr|F1RT22-1|F1RT22_PIG Isoform 1 of Armadillo repeat containing 2 OS=Sus scrofa OX=9823 GN=ARMC2 PE=4 SV=4 CANONICAL=F1RT22-1" }, "locus": { "chromosome": "1", "start_pos": 75041598, "end_pos": 74930343, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004851.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004851.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004737.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004737.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 767, "start_aa": "Thr", "end_pos": 767, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr767", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSS5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523341", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523341", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cilium organization", "id": "GO:0044782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044782", "evidence": [ { "database": "UniProtKB", "id": "F1RT22", "url": "https://www.uniprot.org/uniprotkb/F1RT22" } ], "pmid": "" }, { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "F1RT22", "url": "https://www.uniprot.org/uniprotkb/F1RT22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 359, "end_pos": 361, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" }, { "start_pos": 653, "end_pos": 655, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" }, { "start_pos": 737, "end_pos": 739, "annotation": "n_glycosylation_sequon" }, { "start_pos": 781, "end_pos": 783, "annotation": "n_glycosylation_sequon" }, { "start_pos": 785, "end_pos": 787, "annotation": "n_glycosylation_sequon" }, { "start_pos": 788, "end_pos": 790, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RT22-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 861, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RT22-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RT22" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 767 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 233, "end_pos": 235 }, { "start_pos": 359, "end_pos": 361 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 538, "end_pos": 540 }, { "start_pos": 653, "end_pos": 655 }, { "start_pos": 696, "end_pos": 698 }, { "start_pos": 737, "end_pos": 739 }, { "start_pos": 781, "end_pos": 783 }, { "start_pos": 785, "end_pos": 787 }, { "start_pos": 788, "end_pos": 790 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { 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"evidence": [ { "id": "F1RR60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RR60" } ] }, { "name": "PHYHD1", "type": "synonym", "evidence": [ { "id": "XP_001928876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928876" } ] } ], "protein_names": [ { "name": "Phytanoyl-CoA dioxygenase domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1RR60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RR60/entry#names_and_taxonomy" } ] }, { "name": "phytanoyl-CoA dioxygenase domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928876" } ] } ], "function": [ { "annotation": "2-oxoglutarate(2OG)-dependent dioxygenase that catalyzes the conversion of 2-oxoglutarate to succinate and CO(2) in an iron-dependent manner. However, does not couple 2OG turnover to the hydroxylation of acyl-coenzyme A derivatives, implying that it is not directly involved in phytanoyl coenzyme-A metabolism. Does not show detectable activity towards fatty acid CoA thioesters.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXP1#function" }, { "database": "UniProtKB", "id": "ARBA00045487", "url": "https://www.uniprot.org/uniprotkb/ARBA00045487#function" }, { "database": "UniProtKB", "id": "A0A4X1TJS3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJS3#function" }, { "database": "UniProtKB", "id": "A0A5G2R812", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R812#function" }, { "database": "UniProtKB", "id": "A0A8W4FQQ0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQQ0#function" }, { "database": "UniProtKB", "id": "F1RR60", "url": "https://www.uniprot.org/uniprotkb/F1RR60#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RR60", "url": "https://www.uniprot.org/uniprotkb/F1RR60" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHYHD1", "url": "https://www.uniprot.org/uniprotkb/F1RR60", "locus": { "chromosome": "1", "start_pos": 269254670, "end_pos": 269242734, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005665", "url": "https://www.ensembl.org/id/ENSSSCG00000005665" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005665", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005665", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255203", "url": "https://www.ncbi.nlm.nih.gov/gene/110255203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255203", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYSEDNW", "url": "https://omabrowser.org/oma/group/KYSEDNW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RR60", "url": "https://www.orthodb.org/?gene=F1RR60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20883", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20883", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20883:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20883:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928876", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928876", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TJS3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TJS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R812", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R812", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R812-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R812-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQQ0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FQQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR60", "url": "https://www.uniprot.org/uniprotkb/F1RR60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR60-1", "url": "https://www.uniprot.org/uniprotkb/F1RR60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQPTAELPFPPLYT", "length": 291, "header": "tr|F1RR60-1|F1RR60_PIG Isoform 1 of Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=PHYHD1 PE=1 SV=1 CANONICAL=F1RR60-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TJS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJS3/entry", "sequence": { "sequence": "MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKVQQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQPTAELPFPPLYT", "length": 270, "header": "tr|A0A4X1TJS3-1|A0A4X1TJS3_PIG Computationally mapped isoform of Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=PHYHD1 PE=1 SV=1 CANONICAL=F1RR60-1" }, "locus": { "chromosome": "1", "start_pos": 269254244, "end_pos": 269242793, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045865.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045865.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049498.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049498.2" } ] } }, { "isoform_ac": "A0A5G2QXP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXP1/entry", "sequence": { "sequence": "MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKSPLTRTPPSCTRSPWAGCWACGWHWRMPRWRTAASGSSPAPTQVGCREGWSGPLLARPRAPASLGLSQLGITTSLCPHQCGEGPSSSTEKWCTKASRTSPTALARPTRSTSWTPLTPCGARRTGSSPQPSSPFPRCTPKASRAGPLPPPG", "length": 295, "header": "tr|A0A5G2QXP1-1|F1RR60_PIG Computationally mapped isoform of Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=PHYHD1 PE=1 SV=1 CANONICAL=F1RR60-1" }, "locus": { "chromosome": "1", "start_pos": 269254282, "end_pos": 269242793, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081318.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081318.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062977.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062977.1" } ] } }, { "isoform_ac": "A0A5G2R812-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R812/entry", "sequence": { "sequence": "LQNLQLLKPCEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGLELGPRALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQPTAELPFPPLYT", "length": 279, "header": "tr|A0A5G2R812-1|F1RR60_PIG Computationally mapped isoform of Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=PHYHD1 PE=1 SV=1 CANONICAL=F1RR60-1" }, "locus": { "chromosome": "1", "start_pos": 269254244, "end_pos": 269243996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070288.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070288.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073408.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073408.1" } ] } }, { "isoform_ac": "A0A8W4FQQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FQQ0/entry", "sequence": { "sequence": "LQNLQLLKPCEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGLELGPRALHAHDPVFRCITHSPKVQVSRGLGEVSPHQDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQPTAELPFPPLYT", "length": 258, "header": "tr|A0A8W4FQQ0-1|F1RR60_PIG Computationally mapped isoform of Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=PHYHD1 PE=1 SV=1 CANONICAL=F1RR60-1" }, "locus": { "chromosome": "1", "start_pos": 269254244, "end_pos": 269243996, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104790.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104790.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080745.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080745.1" } ] } }, { "isoform_ac": "F1RR60-1", "url": "https://www.uniprot.org/uniprotkb/F1RR60/entry", "sequence": { "sequence": "MANLSPSQLQKFQEDGFLVLEGFLSAAECVAMQQRIGELVAEMDVPRHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKAINKIGHALHAHDPVFRCITHSPKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGMWMALEDATLENGCLWFIPGSHTGGVSRRMVRAPAGSAPGTSFLGSEPARDNNLFVPTPVRRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLMDAADTVWSPENWLQPTAELPFPPLYT", "length": 291, "header": "tr|F1RR60-1|F1RR60_PIG Isoform 1 of Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=PHYHD1 PE=1 SV=1 CANONICAL=F1RR60-1" }, "locus": { "chromosome": "1", "start_pos": 269254244, "end_pos": 269242793, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006228.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006228.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006069.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006069.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXP1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXP1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255203", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T328-1", "protein_name": "Phytanoyl-CoA dioxygenase domain-containing protein 1", "gene_name": "PHYHD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MACLIPSQLQKFQEDGFLVLEGFLSADECEAMQRRIDEIVAKMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDKQGNFLVPPEKSINKIGHALHALDPIFRCVTHSHKVQALARSLGLQMPVVVQSMYIFKQPHFGGEVAPHQDASFLYTEPLGRVLGLWIALEDAMLENGCLWFIPGSHTGGVSRRMVRTPAGSVPGTSFLGSEPIRDNSLFVPTPVLRGALVLIHGEVVHKSEQNLSDRSRQAYTFHLMEAAGTIWSPDNWPANLPHGAAEYGGHSVTHTNGQDACIGH", "length": 305 }, "evidence": [ { "id": "F1RR60", "url": "https://omabrowser.org/oma/group/F1RR60/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54XH6-1", "protein_name": "Phytanoyl-CoA dioxygenase domain-containing protein 1 homolog", "gene_name": "phyhd1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLTEEQVAQYKKDGFLIIRNFNTTEEIDIVRGEMKKLIDELDTPSTISIFTTSEQERKVDDYFLGSGDKIRYFFEKGSIEDGKLIVPKDMAFNKVGHALHDLNPKFEEFSYSQKIHDLIYSLGIYNKALSGIMYIFKNQKIGGEVDIHQDSTFLHTTPLTTHAIWFAFEDSTIENGCLRGLPGSHTEGITRRFITDPNSESGCSFIKLAEDKQYNKSDFVALECKKGDIILLDGSVVHYSEPNTSPNSRHAYTLHFIEGDNGVIYENDNWLQSAKPFRVL", "length": 281 }, "evidence": [ { "id": "F1RR60", "url": "https://omabrowser.org/oma/group/F1RR60/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5BJP9-1", "protein_name": "Phytanoyl-CoA dioxygenase domain-containing protein 1", "gene_name": "Phyhd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLSPSQLKKFQEDGFLLLEGFFTADECVVMQQRIGEIVAEMDVPLHCRTEFSTQEDEQLQTQGNTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFRSITHSPKVQALVRSLGLQIPVVVQSMYIFKQPHFGGEVSPHQDATFLYTEPLGRVLGLWIATEDAMLENGCLWFIPGSHTSGVSRRMIRAPSDSGPGTSFLGSEPAWDNNLFVPLPVRRGGLVLIHGEVVHKSEQNLSDHSRQAYTFHLMEAAGTVWSPGNWLQPTTELPFPPLYI", "length": 291 }, "evidence": [ { "id": "F1RR60", "url": "https://omabrowser.org/oma/group/F1RR60/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SRE7-1", "protein_name": "Phytanoyl-CoA dioxygenase domain-containing protein 1", "gene_name": "PHYHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT", "length": 291 }, "evidence": [ { "id": "F1RR60", "url": "https://omabrowser.org/oma/group/F1RR60/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5U3U0-1", "protein_name": "Phytanoyl-CoA dioxygenase domain-containing protein 1", "gene_name": "phyhd1", "tax_id": 7955, "organism": "Danio 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"InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13817:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13817:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZK06", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZK06-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A887", "url": "https://www.uniprot.org/uniprotkb/A0A287A887", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A887-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A887-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSB6", "url": "https://www.uniprot.org/uniprotkb/A0A287BSB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVL5", "url": "https://www.uniprot.org/uniprotkb/F1RVL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVL5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLVAVPFYQKRHRHFDQSYRNIQTRYLLDEYAAKKRASTQSSSQKSVTQESSSQRASSQTLLGGTTCRLCAKRVSTALEEEEQERKRRYHSLLAAYGEAKRERYLSELAQLEEDVHLARTHARDKLDRFALQHVVGDRLAWERHSFEDRISRAPEILVRLRSHTVWERMSVKLCFTVQGFPTPVVQWYKDGSLICQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAAVVVRRFHGDEEPFHSVGLPIRLPLSSVIPYTHFDVQFLEKFGVTFRREGETLTLKCTLLVTPDLKRVQPRAEWYRDDVLLKESKWTKMFFGEGQASLSFSHLNKDDEGLYTLRIVSRGGISDHSAFLFVRDADPLVMGAPGAPMDVHCHDANRDYVIVTWKPPNTTKESPVLGYFIDRCEVGTDNWVQCNDAPVKICKYPVSGLVEGRSYTFRVRAVNSAGVSRPSRASEAVAALDPLDLKRLQGIHWEGDKDIVIYQDDLEGEVQIPRPPTNVHASEISRTYVVLSWDPPTPRGKEPLMYFIEKSVVGSGTWQRENAQTAVRSPRYAVFDLAEGKSYVFRVLSANKHGLSDPSEITSPIQAQDTIVVPSAPGRVLASRNTKTSVVVQWDQPKHGEDLLGYYVDCCVAGSNVWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAALTVPSHPYGITLLNCDGHSMTLGWKVPKFSGGSPIIGYYVDKREGHHKNWHEVNSSPLKERILTVEGLTEGSTYEFKIAANLVGIGLPSDPSELFKCEAWTAPEPGPAYDLTFCEVRDTSLVLLWKAPVYSGSSPVSGYFVDFKEEDSGEWNTVNEVATANRYLKVCDLHQGKTYVFRVRAVNANGVGKPSDTSEPVLVEARPGTKEISAGVDEEGNIYLSFDCQEMTDASHFTWCKSYEDIADDERFKVETVGDHSKLYFKHPDKVDLGTYSVSVSDTDGVSSSFVLDEEELERLMALSNEIKNPTIPLKSELAYEIFDKGQVRFWLQAEHLSPDASYRFVINDREVPDSETHRIKCDKSTGIVEMVMDRFTIENEGTYTVQIHDGKAKNQSSLVLIGDAFKAVLEEAEFQRKEFLRKQGPHFSEYLHWDVTEECEVRLVCKVANTKKETVFKWLKDDVLYETEKLPDLEKGVCELLIPKLSKKDHGEYKATLKDERGQDVSILEIAGKVYEDMILAMSRVCGASASPLKILCTPEGIRLQCFMKYFMEEMKVNWYHKDAKIASSEHMRIGGSEEMAWLQICEPTEKDKGKYTFEIFDGKNNHQRSLDLSGQAFDEAFAEFQQLKAAAFAEKNRGKVIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVVWFKNDKDIELSEHFSVKVEQAKYVSMTIKGVTSEDSGKYSIHVKNKYGGEKIDVTVSVYKHGEEIPDVVLPQQAKPKLIPASASE", "length": 1462, "header": "tr|F1RVL5-1|F1RVL5_PIG Isoform 1 of Myomesin 2 OS=Sus scrofa OX=9823 GN=MYOM2 PE=1 SV=4 CANONICAL=F1RVL5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZK06-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZK06/entry", "sequence": { "sequence": "MARPCTGICVCVHMYRRASTQSSSQKSVTQESSSQRESSSERASSQTLLGGTTCRLCAKRVSTALEEEEQERKRRYHSLLAAYGEAKRERYLSELAQLEEDVHLARTHARDKLDRFALQHVDTHALRHAVGDRLAWERHSFEDRISRAPEILVRLRSHTVWERMSVKLCFTVQGFPTPVVQWYKDGSLICQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAAVVVRRFHGDEEPFHSVGLPIRLPLSSVIPYTHFDVQFLEKFGVTFRREGETLTLKCTLLVTPDLKRVQPRAEWYRDDVLLKESKWTKMFFGEGQASLSFSHLNKDDEGLYTLRIVSRGGISDHSAFLFVRDADPLVMGAPGAPMDVHCHDANRDYVIVTWKPPNTTKESPVLGYFIDRCEVGTDNWVQCNDAPVKICKYPVSGLVEGRSYTFRVRAVNSAGVSRPSRASEAVAALDPLDLKRLQGIHWEGDKDIVIYQDDLEGEVQIPRPPTNVHASEISRTYVVLSWDPPTPRGKEPLMYFIEKSVVGSGTWQRENAQTAVRSPRYAVFDLAEGKSYVFRVLSANKHGLSDPSEITSPIQAQDTIVVPSAPGRVLASRNTKTSVVVQWDQPKHGEDLLGYYVDCCVAGSNVWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAALTVPSHPYGITLLNCDGHSMTLGWKVPKFSGGSPIIGYYVDKREGHHKNWHEVNSSPLKERILTVEGLTEGSTYEFKIAAPTWWGSGCRRIPVSSSSVRPGQRLSQVLPTT", "length": 813, "header": "tr|A0A286ZK06-1|F1RVL5_PIG Computationally mapped isoform of Myomesin 2 OS=Sus scrofa OX=9823 GN=MYOM2 PE=1 SV=2 CANONICAL=F1RVL5-1" }, "locus": { "chromosome": "15", "start_pos": 33577699, "end_pos": 33536682, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031896.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031896.3" } ] } }, { "isoform_ac": "A0A287A887-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A887/entry", "sequence": { "sequence": "MSLVAVPFYQKRHRHFDQSYRNIQTRYLLDEYAAKKRASTQSSSQKSVTQESSSQRESSSERASSQTLLGGTTCRLCAKRVSTALEEEEQERKRRYHSLLAAYGEAKRERYLSELAQLEEDVHLARTHARDKLDRFALQHVDTHALRHAVGDRLAWERHSFEDRISRAPEILVRLRSHTVWERMSVKLCFTVQGFPTPVVQWYKDGSLICQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAAVVVRRFHGDEEPFHSVGLPIRLPLSSVIPYTHFDVQFLEKFGVTFRREGETLTLKCTLLVTPDLKRVQPRAEWYRDDVLLKESKWTKMFFGEGQASLSFSHLNKDDEGLYTLRIVSRGGISDHSAFLFVRDADPLVMGAPGAPMDVHCHDANRDYVIVTWKPPNTTKESPVLGYFIDRCEVGTDNWVQCNDAPVKICKYPVSGLVEGRSYTFRVRAVNSAGVSRPSRASEAVAALDPLDLKRLQGIHWEGDKDIVIYQDDLEGEVQIPRPPTNVHASEISRTYVVLSWDPPTPRGKEPLMYFIEKSVVGSGTWQRENAQTAVRSPRYAVFDLAEGKSYVFRVLSANKHGLSDPSEITSPIQAQDTIVVPSAPGRVLASRNTKTSVVVQWDQPKHGEDLLGYYVDCCVAGSNVWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAALTVPSHPYGITLLNCDGHSMTLGWKVPKFSGGSPIIGYYVDKREGHHKNWHEVNSSPLKERILTVEGLTEGSTYEFKIAANLVGIGLPSDPSELFKCEAWTAPEPGPAYDLTFCEVRDTSLVLLWKAPVYSGSSPVSGYFVDFKEEDSGEWNTVNEVATANRYLKVCDLHQGKTYVFRVRAVNANGVGKPSDTSEPVLVEARPGTKEISAGVDEEGNIYLSFDCQEMTDASHFTWCKSYEDIADDERFKVETVGDHSKLYFKHPDKVDLGTYSVSVSDTDGVSSSFVLDEEELERLMALSNEIKNPTIPLKSELAYEIFDKGQVRFWLQAEHLSPDASYRFVINDREVPDSETHRIKCDKSTGIVEMVMDRFTIENEGTYTVQIHDGKAKNQSSLVLIGDAFKAVLEEAEFQRKEFLRKQGPHFSEYLHWDVTEECEVRLVCKVANTKKETVFKWLKDDVLYETEKLPDLEKGVCELLIPKLSKKDHGEYKATLKDERGQDVSILEIAGKVYEDMILAMSRVCGASASPLKILCTPEGIRLQCFMKYFMEEMKVNWYHKDAKIASSEHMRIGGSEEMAWLQICEPTEKDKGKYTFEIFDGKNNHQRSLDLSGQAFDEAFAEFQQLKAAAFAEKNRGKVIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVVWFKNDKDIELSEHFSVKVEQAKYVSMTIKGVTSEDSGKYSIHVKNKYGGEKIDVTVSVYKHGEEIPDVVLPQQAKPKLIPASASE", "length": 1476, "header": "tr|A0A287A887-1|A0A287A887_PIG Computationally mapped isoform of Myomesin 2 OS=Sus scrofa OX=9823 GN=MYOM2 PE=1 SV=3 CANONICAL=F1RVL5-1" }, "locus": { "chromosome": "15", "start_pos": 33606561, "end_pos": 33535661, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055145.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055145.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040201.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040201.3" } ] } }, { "isoform_ac": "A0A287BSB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSB6/entry", "sequence": { "sequence": "TMQHVYTKMSLVAVPFYQKRHRHFDQSYRNIQTRYLLDEYAAKKRASTQSSSQKSVTQESSSQRESSSERASSQTLLGGTTCRLCAKRVSTALEEEEQERKRRYHSLLAAYGEAKRERYLSELAQLEEDVHLARTHARDKLDRFALQHVDTHALRHAVGDRLAWERHSFEDRISRAPEILVRLRSHTVWERMSVKLCFTVQGFPTPVVQWYKDGSLICQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAAVVVRRFHGDEEPFHSVGLPIRLPLSSVIPYTHFDVQFLEKFGVTFRREGETLTLKCTLLVTPDLKRVQPRAEWYRDDVLLKESKWTKMFFGEGQASLSFSHLNKDDEGLYTLRIVSRGGISDHSAFLFVRDADPLVMGAPGAPMDVHCHDANRDYVIVTWKPPNTTKESPVLGYFIDRCEVGTDNWVQCNDAPVKICKYPVSGLVEGRSYTFRVRAVNSAGVSRPSRASEAVAALDPLDLKRLQGIHWEGDKDIVIYQDDLEGEVQIPRPPTNVHASEISRTYVVLSWDPPTPRGKEPLMYFIEKSVVGSGTWQRENAQTAVRSPRYAVFDLAEGKSYVFRVLSANKHGLSDPSEITSPIQAQDTIVVPSAPGRVLASRNTKTSVVVQWDQPKHGEDLLGYYVDCCVAGSNVWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAALTVPSHPYGITLLNCDGHSMTLGWKVPKFSGGSPIIGYYVDKREGHHKNWHEVNSSPLKERILTVEGLTEGSTYEFKIAAPTWWGSGCRRIPVSSSSVRPGQRLSQVPTSGWVGTLGFFLVLLSLYRRYLLGSGEHGDS", "length": 869, "header": "tr|A0A287BSB6-1|A0A287BSB6_PIG Computationally mapped isoform of Myomesin 2 OS=Sus scrofa OX=9823 GN=MYOM2 PE=1 SV=2 CANONICAL=F1RVL5-1" }, "locus": { "chromosome": "15", "start_pos": 33577453, "end_pos": 33535559, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044724.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044724.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059067.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059067.2" } ] } }, { "isoform_ac": "A0A5G2QZI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZI7/entry", "sequence": { "sequence": "MSLVAVPFYQKRHRHFDQSYRNIQTRYLLDEYAAKKRASTQSSSQKSVTQESSSQRESSSERASSQTLLGGTTCRLCAKRVSTALEEEEQERKRRYHSLLAAYGEAKRERYLSELAQLEEDVHLARTHARDKLDRFALQHVDTHALRHAVGDRLAWERHSFEDRISRAPEILVRLRSHTVWERMSVKLCFTVQGFPTPVVQWYKDGSLICQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAAVVVRRFHGDEEPFHSVGLPIRLPLSSVIPYTHFDVQFLEKFGVTFRREGETLTLKCTLLVTPDLKRVQPRAEWYRDDVLLKESKWTKMFFGEGQASLSFSHLNKDDEGLYTLRIVSRGGISDHSAFLFVRDADPLVMGAPGAPMDVHCHDANRDYVIVTWKPPNTTKESPVLGYFIDRCEVGTDNWVQCNDAPVKICKYPVSGLVEGRSYTFRVRAVNSAGVSRPSRASEAVAALDPLDLKRLQGIHWEGDKDIVIYQDDLEGEVQIPRPPTNVHASEISRTYVVLSWDPPTPRGKEPLMYFIEKSVVGSGTWQRENAQTAVRSPRYAVFDLAEGKSYVFRVLSANKHGLSDPSEITSPIQAQDTIVVPSAPGRVLASRNTKTSVVVQWDQPKHGEDLLGYYVDCCVAGSNVWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAALTVPSHPYGITLLNCDGHSMTLGWKVPKFSGGSPIIGYYVDKREGHHKNWHEVNSSPLKERILTVEGLTEGSTYEFKIAAPTWWGSGCRRIPVSSSSVRPGQRLSQVPTSGWVGTLGFFLVLLSLYRRYLLGSGEHGDS", "length": 861, "header": "tr|A0A5G2QZI7-1|F1RVL5_PIG Computationally mapped isoform of Myomesin 2 OS=Sus scrofa OX=9823 GN=MYOM2 PE=1 SV=1 CANONICAL=F1RVL5-1" }, "locus": { "chromosome": "15", "start_pos": 33577453, "end_pos": 33535661, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079781.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079781.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063655.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063655.1" } ] } }, { "isoform_ac": "F1RVL5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVL5/entry", "sequence": { "sequence": "MSLVAVPFYQKRHRHFDQSYRNIQTRYLLDEYAAKKRASTQSSSQKSVTQESSSQRASSQTLLGGTTCRLCAKRVSTALEEEEQERKRRYHSLLAAYGEAKRERYLSELAQLEEDVHLARTHARDKLDRFALQHVVGDRLAWERHSFEDRISRAPEILVRLRSHTVWERMSVKLCFTVQGFPTPVVQWYKDGSLICQAGEPGKYRIESKYGVHTLEINRADFDDTATYSAVATNVHGQVSTNAAVVVRRFHGDEEPFHSVGLPIRLPLSSVIPYTHFDVQFLEKFGVTFRREGETLTLKCTLLVTPDLKRVQPRAEWYRDDVLLKESKWTKMFFGEGQASLSFSHLNKDDEGLYTLRIVSRGGISDHSAFLFVRDADPLVMGAPGAPMDVHCHDANRDYVIVTWKPPNTTKESPVLGYFIDRCEVGTDNWVQCNDAPVKICKYPVSGLVEGRSYTFRVRAVNSAGVSRPSRASEAVAALDPLDLKRLQGIHWEGDKDIVIYQDDLEGEVQIPRPPTNVHASEISRTYVVLSWDPPTPRGKEPLMYFIEKSVVGSGTWQRENAQTAVRSPRYAVFDLAEGKSYVFRVLSANKHGLSDPSEITSPIQAQDTIVVPSAPGRVLASRNTKTSVVVQWDQPKHGEDLLGYYVDCCVAGSNVWEPCNHKPIGYNRFVVHGLTTGEQYIFRVKAVNAVGTSENSQESDVIKVQAALTVPSHPYGITLLNCDGHSMTLGWKVPKFSGGSPIIGYYVDKREGHHKNWHEVNSSPLKERILTVEGLTEGSTYEFKIAANLVGIGLPSDPSELFKCEAWTAPEPGPAYDLTFCEVRDTSLVLLWKAPVYSGSSPVSGYFVDFKEEDSGEWNTVNEVATANRYLKVCDLHQGKTYVFRVRAVNANGVGKPSDTSEPVLVEARPGTKEISAGVDEEGNIYLSFDCQEMTDASHFTWCKSYEDIADDERFKVETVGDHSKLYFKHPDKVDLGTYSVSVSDTDGVSSSFVLDEEELERLMALSNEIKNPTIPLKSELAYEIFDKGQVRFWLQAEHLSPDASYRFVINDREVPDSETHRIKCDKSTGIVEMVMDRFTIENEGTYTVQIHDGKAKNQSSLVLIGDAFKAVLEEAEFQRKEFLRKQGPHFSEYLHWDVTEECEVRLVCKVANTKKETVFKWLKDDVLYETEKLPDLEKGVCELLIPKLSKKDHGEYKATLKDERGQDVSILEIAGKVYEDMILAMSRVCGASASPLKILCTPEGIRLQCFMKYFMEEMKVNWYHKDAKIASSEHMRIGGSEEMAWLQICEPTEKDKGKYTFEIFDGKNNHQRSLDLSGQAFDEAFAEFQQLKAAAFAEKNRGKVIGGLPDVVTIMEGKTLNLTCTVFGNPDPEVVWFKNDKDIELSEHFSVKVEQAKYVSMTIKGVTSEDSGKYSIHVKNKYGGEKIDVTVSVYKHGEEIPDVVLPQQAKPKLIPASASE", "length": 1462, "header": "tr|F1RVL5-1|F1RVL5_PIG Isoform 1 of Myomesin 2 OS=Sus scrofa OX=9823 GN=MYOM2 PE=1 SV=4 CANONICAL=F1RVL5-1" }, "locus": { "chromosome": "15", "start_pos": 33606561, "end_pos": 33535661, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017147.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017147.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016687.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016687.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZI7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "M band", "id": "GO:0031430", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031430", "evidence": [ { "database": "UniProtKB", "id": "F1RVL5", "url": "https://www.uniprot.org/uniprotkb/F1RVL5" } ], "pmid": "" }, { "name": "myosin filament", "id": "GO:0032982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032982", "evidence": [ { "database": "UniProtKB", "id": "F1RVL5", "url": "https://www.uniprot.org/uniprotkb/F1RVL5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "structural constituent of muscle", "id": "GO:0008307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008307", "evidence": [ { "database": "UniProtKB", "id": "F1RVL5", "url": "https://www.uniprot.org/uniprotkb/F1RVL5" } ], "pmid": "" }, { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F1RVL5", "url": "https://www.uniprot.org/uniprotkb/F1RVL5" } ], "pmid": "" }, { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "F1RVL5", "url": "https://www.uniprot.org/uniprotkb/F1RVL5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sarcomere organization", "id": "GO:0045214", "url": 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dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Sus scrofa OX=9823 GN=NDUFAF6 PE=1 SV=2 CANONICAL=F1RY58-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZI8/entry", "sequence": { "sequence": "MAASMLGSAWGPLRLGLPGLCRRRPPGGLWARARRLPGSAGSGRSVAAASGSGASGTDRYCMELLRKRDYEGYLCSLLFPAESRSSAFALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVDDIYCDSPPHQPVAIELWKAVKRHNLTKRWLMKIIDEREKNLDDKAYRNIQELENYAENTQSSLLYLTLEILGVKDLHADHAASHIGKAQGIVTCLRATPYHGSRRRVFLPMDICMLHGVSQEDFLRKSQDKNVRDVVYDIASQAHLHLKHARSFHKSVPAKAFPAFLQTVMELSSVLTAARLQWFESALPLTGYGTLSSLNTLFLSLHVGENTL", "length": 336, "header": "tr|A0A5G2QZI8-1|F1RY58_PIG Computationally mapped isoform of NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Sus scrofa OX=9823 GN=NDUFAF6 PE=1 SV=1 CANONICAL=F1RY58-1" }, "locus": { "chromosome": "4", "start_pos": 41655653, "end_pos": 41627863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082652.2", "url": 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"https://www.uniprot.org/uniprotkb/A0A5G2QZI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152224", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152224", "resource": "KEGG Pathway" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PQC5-1", "protein_name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6", "gene_name": "NDUFAF6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"MAASTLGSAWGPLRLGVPGLCRRRPPRGLWARARRLSEPVASGRSVAAGSGLGASGTDRYCLELLRKRDYEGYLCSLLLPAESRSSAFALRAFNVELAQIKDSVSEKTIGLMRMQFWKKTVDDIYSDNPPHQPVAIELWKAVRRHNLTKRWLMKIIDEREKNLDDKAYRNIQELENYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGSRRRVFLPMDICMLHGVSQEDFLRKSQDRNVRDVVYDVASQAHLHLKHARSFHRSIPVKAFPAFLQTVALEDYLKKIQQVDFDLFHPSLQRKNTLLPLSLYIQSWRKRY", "length": 333 }, "evidence": [ { "id": "F1RY58", "url": "https://omabrowser.org/oma/group/F1RY58/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZN43-1", "protein_name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6", "gene_name": "Ndufaf6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATSMLGSVPGPRPFGLAGLFRRRPPRDPWERVRRLPRLSAVRRSVAAASGPGIPDSHLYCLELLRKRDYESYLCSLLFPAECQRSASALRAFNVELAQVKDSVSEKTIGLMRMQFWRKAVEDMFCDNPPHQPVAMELWKAVKRHNLTKRWLLRIIDEREKNLDDKAYRSIRELETYAENTQSSLLYLTLEVLGVKDVHADHAASHIGKAQGIVTCLRATPYHSSRRQVFLPMDVCVQHGVSQEDFLRRNQDKNVRDVVYDIASQAHLHLKHARSFHSRVPAEAFPAFLQTVSLEDYLKKIQRVDFDIFHPSLQQKNTLLPLSLYIQSWRKRY", "length": 333 }, "evidence": [ { "id": "F1RY58", "url": "https://omabrowser.org/oma/group/F1RY58/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q330K2-1", "protein_name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6", "gene_name": "NDUFAF6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASAHGSVWGPLRLGIPGLCCRRPPLGLYARMRRLPGPEVSGRSVAAASGPGAWGTDHYCLELLRKRDYEGYLCSLLLPAESRSSVFALRAFNVELAQVKDSVSEKTIGLMRMQFWKKTVEDIYCDNPPHQPVAIELWKAVKRHNLTKRWLMKIVDEREKNLDDKAYRNIKELENYAENTQSSLLYLTLEILGIKDLHADHAASHIGKAQGIVTCLRATPYHGSRRKVFLPMDICMLHGVSQEDFLRRNQDKNVRDVIYDIASQAHLHLKHARSFHKTVPVKAFPAFLQTVSLEDFLKKIQRVDFDIFHPSLQQKNTLLPLYLYIQSWRKTY", "length": 333 }, "evidence": [ { "id": "F1RY58", "url": "https://omabrowser.org/oma/group/F1RY58/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54E48-1", "protein_name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIRNSGRILFNSLKNSNVKLINRNVIINSNIRLFSTSTNNTIKESVEKKAETISNKDNIASPSSKSIDVSDLAGNADYNFVFERIKTCDKENYINSLLISDPIARRVAYAIRAFNIETVANDHSPKSEKISRLRLSFWKDAINNIYNGKVYDQPLTRVLAQVIKEKKLTKTWFIKILNRREKDNQQVQIKDMEELEQYADDIHSSLMLLTLEGLGVKGNHDVEHCASHLGKAIGIMVLIRGTVYHLASRKTYIPVSLTTKYGINVESLYRGDPQIEKLQNAIYEMASCAKLHLDKAKQFRGKIPHPATEAFLSVSVVEDFLERLRKADFNIFEFPNTQQHPLLLIKLYKNKFFKQF", "length": 356 }, "evidence": [ { "id": "F1RY58", "url": "https://omabrowser.org/oma/group/F1RY58/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9SI77-1", "protein_name": "Terpenoid synthases superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNGGGSSSLRSALSYCVQQVRNYDYHHYLCLLELPTEMRKAAFALRAFNVETARAMDVASDPKIGLMRLLWWQEAIDKLYTKKPINHPAAQALSWAISEHNISKPWLKRSVDARIRDAQREVDDIPESIAELEKYAEDTVSTLLYNTLQAGGISSTTADHAASHIGKASGLVLLLKSLPYHCTRNRHQSYIPADLAEKHGLLVKQGGRLEILLDNDSREGLSNVVFEIASVANAHLLKARELAGKVPAEAKPVLLHSVPVQVLLDSLNKVQFDVFDPRIQRGVLGVPPLLFQFKLKWYSWRAMF", "length": 304 }, "evidence": [ { "id": "F1RY58", "url": "https://omabrowser.org/oma/group/F1RY58/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VYS5-1", "protein_name": "NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog", "gene_name": "sicily", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRRLVRNWNCRLLFNAKSGQEIVSHAGIHQEAKTNAIPREKKVIEADKNGYGAKHCMSLVEKYDYENYLCTLLLPRELRRAAFALRAFNVEVSRSVSGHQIEPQIAKMRLKFWHDSIDKCFEPDSQRSYVEDQPVLRELKHTVGSRKLNKVYLRRLVTARERPPTHAFESIRELEEYTEQTFSSLLLLLLEVGGVRDLNADHAASHLGKAQGIATLLRSIPLAGRQQAPCIPLEVLVLHGVSQERIIRSKSDDKGVEDCIFDVASAANTHLKLARQLHDKVPPQVRKIFLSAVATDAYLERLRRANFLLTHKSCVGRDTLLPARLFWKSLLNRF", "length": 334 }, "evidence": [ { "id": "F1RY58", "url": "https://omabrowser.org/oma/group/F1RY58/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1RY58", "url": "https://www.uniprot.org/uniprotkb/F1RY58" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RY58", "url": "https://www.uniprot.org/uniprotkb/F1RY58" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial respiratory chain complex I assembly", "id": "GO:0032981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032981", "evidence": [ { "database": "UniProtKB", "id": "F1RY58", "url": "https://www.uniprot.org/uniprotkb/F1RY58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RY58-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 333, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RY58-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RY58" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S2I9-1", "uniprot_ac": "F1S2I9", "uniprot_id": "F1S2I9_PIG", "mass": { "chemical_mass": 84289.0, "monoisotopic_mass": 84289.0 }, "refseq": { "ac": "XP_003126990", "name": "leucine-rich repeat-containing protein 36 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126990" }, "gene_names": [ { "name": "LRRC36", "type": "recommended", "evidence": [ { "id": "F1S2I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2I9" } ] }, { "name": "LRRC36", "type": "synonym", "evidence": [ { "id": "XP_003126990", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126990" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 36", "type": "synonym", "evidence": [ { "id": "F1S2I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2I9/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 36 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003126990", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126990" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S2I9", "url": "https://www.uniprot.org/uniprotkb/F1S2I9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC36", "url": "https://www.uniprot.org/uniprotkb/F1S2I9", "locus": { "chromosome": "6", "start_pos": 28038168, "end_pos": 27966365, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002779", "url": "https://www.ensembl.org/id/ENSSSCG00000002779" } ] } } ], "crossref": [ { "id": "F1S2I9", "url": "https://alphafold.ebi.ac.uk/entry/F1S2I9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002779", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002779", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524316", "url": "https://www.ncbi.nlm.nih.gov/gene/100524316", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524316", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524316", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S2I9", "url": "https://www.orthodb.org/?gene=F1S2I9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23311", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23311", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23311:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23311:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126990", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126990", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QZK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2I9", "url": "https://www.uniprot.org/uniprotkb/F1S2I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2I9-1", "url": "https://www.uniprot.org/uniprotkb/F1S2I9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEQWDLDEEGIRRLGALTLEQPELVESLSLQGSYAGKIHSIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTDYRLFAVYMLQTLEKLDDRVVRESERKAAKLHFSQLGNSENFLLEVKKSSREKTMKNCVTHESSVSKVNIDVDSRIETDSNKGLFIPFPNPEIKDSPTSTSTAQDSGIPDQKLDTFPLGTQVQEVAGREIPSDNHQEDEFRRYSPHQSTVRSPEKMAREGYRISFLDNKSSGSSPEKDLIPKPDTYQLTHDASLGKRLDVGDSNQIHPYQLPSDVGLENCDSRYSQNLSLHGSLGKRPQRTKNYREYGTKPSNNMKATTSHSCGDLLTSLSNPDSSTGRILKLSSDLYATTHFNSDPALLVNVEQQLSTSLGDLTQAHGSFPNNSILGDSLRTLLLPTGTSENRESLTKRPLSPSRRGFKRKENILATLNPKHGFRDATCSEPLSSDLGSLYGLPGNHSPPISTRTSHVATVLRQLLELVDKHWNGSGSLLLNKKFLGPARDLLLTLVVPAPSQQWCRSHPEDTSKAFRRKEMELKEAGQLIPNDMESLKQKLVRVLEENLILSEKIQHLEEGTATSVVSGHQSHSYDDLLRKNQQLSMQVAYLNQELAQLKKLEETVALLHESQRSLVVTNEYLLQQLNKEQKGYSGKALLPPEKSHHLGRSSPFGKSTLSSSSPVAHDTGQYLIQGVLDSAPEPSLWS", "length": 754, "header": "tr|F1S2I9-1|F1S2I9_PIG Isoform 1 of Leucine rich repeat containing 36 OS=Sus scrofa OX=9823 GN=LRRC36 PE=4 SV=5 CANONICAL=F1S2I9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK1/entry", "sequence": { "sequence": "MFRPRFLPPDDRVVRESERKAAKLHFSQLGNSENFLLEVKKSSREKTMKNCVTHESSVSKVNIDVDSRIETDSNKGLFIPFPNPEIKDSPTSTSTAQDSGIPDQKLDTFPLGTQVQEVAGREIPSDNHQEDEFRRYSPHQSTVRSPEKMAREGYRISFLDNKSSGSSPEKDLIPKPDTYQLTHDASLGKRLDVGDSNQIHPYQLPSDVGLENCDSRYSQNLSLHGSLGKRPQRTKNYREYGTKPSNNMKATTSHSCGDLLTSLSNPDSSTGRILKLSSDLYATTHFNSDPALLVNVEQQLSTSLGDLTQAHGSFPNNSILGDSLRTLLLPTGTSENRESLTKRPLSPSRRGFKRKENILATLNPKHGFRDATCSEESLKQKLVRVLEENLILSEKIQHLEEGTATSVVSGHQSHSYDDLLRKNQQLSMQVAYLNQELAQLKKLEETVALLHESQRSLVVTNEYLLQQLNKEQKGYSGKALLPPEKSHHLGRSSPFGKSTLSSSSPVAHDTGQYLIQGVLDSAPEPSLWS", "length": 529, "header": "tr|A0A5G2QZK1-1|F1S2I9_PIG Computationally mapped isoform of Leucine rich repeat containing 36 OS=Sus scrofa OX=9823 GN=LRRC36 PE=4 SV=1 CANONICAL=F1S2I9-1" }, "locus": { "chromosome": "6", "start_pos": 28038052, "end_pos": 27997621, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091249.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091249.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065208.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065208.2" } ] } }, { "isoform_ac": "F1S2I9-1", "url": "https://www.uniprot.org/uniprotkb/F1S2I9/entry", "sequence": { "sequence": "MAEQWDLDEEGIRRLGALTLEQPELVESLSLQGSYAGKIHSIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNPVVRKDTDYRLFAVYMLQTLEKLDDRVVRESERKAAKLHFSQLGNSENFLLEVKKSSREKTMKNCVTHESSVSKVNIDVDSRIETDSNKGLFIPFPNPEIKDSPTSTSTAQDSGIPDQKLDTFPLGTQVQEVAGREIPSDNHQEDEFRRYSPHQSTVRSPEKMAREGYRISFLDNKSSGSSPEKDLIPKPDTYQLTHDASLGKRLDVGDSNQIHPYQLPSDVGLENCDSRYSQNLSLHGSLGKRPQRTKNYREYGTKPSNNMKATTSHSCGDLLTSLSNPDSSTGRILKLSSDLYATTHFNSDPALLVNVEQQLSTSLGDLTQAHGSFPNNSILGDSLRTLLLPTGTSENRESLTKRPLSPSRRGFKRKENILATLNPKHGFRDATCSEPLSSDLGSLYGLPGNHSPPISTRTSHVATVLRQLLELVDKHWNGSGSLLLNKKFLGPARDLLLTLVVPAPSQQWCRSHPEDTSKAFRRKEMELKEAGQLIPNDMESLKQKLVRVLEENLILSEKIQHLEEGTATSVVSGHQSHSYDDLLRKNQQLSMQVAYLNQELAQLKKLEETVALLHESQRSLVVTNEYLLQQLNKEQKGYSGKALLPPEKSHHLGRSSPFGKSTLSSSSPVAHDTGQYLIQGVLDSAPEPSLWS", "length": 754, "header": "tr|F1S2I9-1|F1S2I9_PIG Isoform 1 of Leucine rich repeat containing 36 OS=Sus scrofa OX=9823 GN=LRRC36 PE=4 SV=5 CANONICAL=F1S2I9-1" }, "locus": { "chromosome": "6", "start_pos": 28038052, "end_pos": 27966398, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003077.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003077.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002998.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002998.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZK1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524316", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524316", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RUY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSLDALGPEWDCPLGSKDLEEEEGPGSGGSGLPPPSCFPGSWRHDVGLDCKGSPEGAEARAWTVHYYSLLQSCLQQAGLPETQDRSQVPRTGCPGAEATLCVLGSPSTFLSVLLEGGVQSPGNMLLCLSPAWLTKVPAPGQPGESTLLVSKAVSFHSGGLTFLDDFVPPRRATYFLAGLGLGPGPGREAAELARDLTCPTGASAELARLLEDRLLTRRLLAQQGDVAVPATLAFTYKPPALLRGGDASPGLRLVELNGKEGQEALVKEEVGTFLHSEALGDALQVAVKLSGWRWRGRQALRLYPRAELGPVVDTVLALLEKLEEEESVLVEAVCPPARLPFPGSPSPGPELALRICAVVCRTQGDRPLLSKMVCGVGRVDRPLRHQSSLPQTLEVALAQCGLGEASQVAVVRQRVKAAAEAALAAVQALEAGLSAEQRGGRQARTDFLGVDFALTVAGRALTPVALELNGGLCLEACGALEGLWAAPRPGLAAEEAAAAPLVETMLRRSARYLMEGKQLLLLGAGGFSKKFVWEAARDYGLKVHLVDSDPNHFASQLVQTFIHFNVTEHQRDEENARVLAELVRARGLQLDGCFSYWDDCLVLTALLCQELGLPSNPPAAMHLAKQKSRTQLHLLSRHGPPWPAPSLYAVPCCPLESEADVDRAARQVPLPGVMKLEFGAGAVGVRLVEDASQCHEHFSRISRDLQVEADHPGIGLGWGNAMLLMEFIEGTEHDVDLVLFGGQLLAAFVSDNGPTRLPGFTETAACMPTGLAPEQEAQLVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRDWILELYGVDLLLAAAMVACGLRPALPARPRARGHLVGVMCLVSQHLQALRSTASRETLKALHDQGLLRLNLLEEALVPGEYEEPYCSVACAGPSLAEARLRLLGLCQGLGIDGPHYPVAYFLSHFK", "length": 951, "header": "tr|F1RUY9-1|F1RUY9_PIG Isoform 1 of Carnosine synthase 1 OS=Sus scrofa OX=9823 GN=CARNS1 PE=1 SV=2 CANONICAL=F1RUY9-1" }, "isoforms": [ { "isoform_ac": "A0A287BLD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLD0/entry", "sequence": { "sequence": 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mapped isoform of Carnosine synthase 1 OS=Sus scrofa OX=9823 GN=CARNS1 PE=1 SV=2 CANONICAL=F1RUY9-1" }, "locus": { "chromosome": "2", "start_pos": 5105122, "end_pos": 5098260, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062373.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062373.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056879.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056879.2" } ] } }, { "isoform_ac": "A0A5G2QZP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP0/entry", "sequence": { "sequence": "MLSLDALGPEWDCPLGSKDLEEEEGPGSGGSGLPPPSCFPGSWRHDVGLDCKGSPEGAEARAWTVHYYSLLQSCLQQAGLPETQDRSQVPRTGCPGAEATLCVLGSPSTFLSVLLEGGVQSPGNMLLCLSPAWLTKVPAPGQPGESTLLVSKAVSFHSGGLTFLDDFVPPRRATYFLAGLGLGPGPGREAAELARDLTCPTGASAELARLLEDRLLTRRLLAQQGDVAVPATLAFTYKPPALLRGGDASPGLRLVELNGKEGQEALVKEEVGTFLHSEALGDALQVAVKLSGWRWRGRQALRLYPRAELGPVVDTVLALLEKLEEEESVLVEAVCPPARLPFPGSPSPGPELALRICAVVCRTQGDRPLLSKMVCGVGRVDRPLRHQSSLPQTLEAALAAVQALEAGLSAEQRGGRQARTDFLGVDFALTVAGRALTPVALELNGGLCLEACGALEGLWAAPRPGLAAEEAAAAPLVETMLRRSARYLMEGKQLLLLGAGGFSKKFVWEAARDYGLKVHLVDSDPNHFASQLVQTFIHFNVTEHQRDEENARVLAELVRARGLQLDGCFSYWDDCLVLTALLCQELGLPSNPPAAMHLAKQKSRTQLHLLSRHGPPWPAPSLYAVPCCPLESEADVDRAARQVPLPGVMKLEFGAGAVGVRLVEDASQCHEHFSRISRDLQVEADHPGIGLGWGNAMLLMEFIEGTEHDVDLVLFGGQLLAAFVSDNGPTRLPGFTETAACMPTGLAPEQEAQLVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRDWILELYGVDLLLAAAMVACGLRPALPARPRARGHLVGVMCLVSQHLQALRSTASRETLKALHDQGLLRLNLLEEALVPGEYEEPYCSVACAGPSLAEARLRLLGLCQGLGIDGPHYPVAYFLSHFK", "length": 925, "header": "tr|A0A5G2QZP0-1|F1RUY9_PIG Computationally mapped isoform of Carnosine synthase 1 OS=Sus scrofa OX=9823 GN=CARNS1 PE=1 SV=1 CANONICAL=F1RUY9-1" }, "locus": { "chromosome": "2", "start_pos": 5105122, "end_pos": 5098260, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069325.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069325.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069598.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069598.1" } ] } }, { "isoform_ac": "F1RUY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RUY9/entry", "sequence": { "sequence": "MLSLDALGPEWDCPLGSKDLEEEEGPGSGGSGLPPPSCFPGSWRHDVGLDCKGSPEGAEARAWTVHYYSLLQSCLQQAGLPETQDRSQVPRTGCPGAEATLCVLGSPSTFLSVLLEGGVQSPGNMLLCLSPAWLTKVPAPGQPGESTLLVSKAVSFHSGGLTFLDDFVPPRRATYFLAGLGLGPGPGREAAELARDLTCPTGASAELARLLEDRLLTRRLLAQQGDVAVPATLAFTYKPPALLRGGDASPGLRLVELNGKEGQEALVKEEVGTFLHSEALGDALQVAVKLSGWRWRGRQALRLYPRAELGPVVDTVLALLEKLEEEESVLVEAVCPPARLPFPGSPSPGPELALRICAVVCRTQGDRPLLSKMVCGVGRVDRPLRHQSSLPQTLEVALAQCGLGEASQVAVVRQRVKAAAEAALAAVQALEAGLSAEQRGGRQARTDFLGVDFALTVAGRALTPVALELNGGLCLEACGALEGLWAAPRPGLAAEEAAAAPLVETMLRRSARYLMEGKQLLLLGAGGFSKKFVWEAARDYGLKVHLVDSDPNHFASQLVQTFIHFNVTEHQRDEENARVLAELVRARGLQLDGCFSYWDDCLVLTALLCQELGLPSNPPAAMHLAKQKSRTQLHLLSRHGPPWPAPSLYAVPCCPLESEADVDRAARQVPLPGVMKLEFGAGAVGVRLVEDASQCHEHFSRISRDLQVEADHPGIGLGWGNAMLLMEFIEGTEHDVDLVLFGGQLLAAFVSDNGPTRLPGFTETAACMPTGLAPEQEAQLVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLRDWILELYGVDLLLAAAMVACGLRPALPARPRARGHLVGVMCLVSQHLQALRSTASRETLKALHDQGLLRLNLLEEALVPGEYEEPYCSVACAGPSLAEARLRLLGLCQGLGIDGPHYPVAYFLSHFK", "length": 951, "header": "tr|F1RUY9-1|F1RUY9_PIG Isoform 1 of Carnosine synthase 1 OS=Sus scrofa OX=9823 GN=CARNS1 PE=1 SV=2 CANONICAL=F1RUY9-1" }, "locus": { "chromosome": "2", "start_pos": 5105122, "end_pos": 5098260, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050642.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050642.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053150.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053150.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZP0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512885", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512885", "resource": "KEGG Pathway" }, { "id": "R-SSC-70921", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "resource": "Reactome", "description": "Histidine catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" } ], "pmid": "" }, { "name": "carnosine synthase activity", "id": "GO:0047730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047730", "evidence": [ { "database": "UniProtKB", "id": "F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" } ], "pmid": "" }, { "name": "homocarnosine synthase activity", "id": "GO:0102102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102102", "evidence": [ { "database": "UniProtKB", "id": "F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "carnosine biosynthetic process", "id": "GO:0035499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035499", "evidence": [ { "database": "UniProtKB", "id": "F1RUY9", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 566, "end_pos": 568, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19297", "name": "", "equation": "beta-alanine + L-histidine + ATP = carnosine + ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19297", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19297" } ] }, { "id": "59568", "name": "", "equation": "4-aminobutanoate + L-histidine + ATP = L-homocarnosine + ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59568", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59568" } ] }, { "id": "R-SSC-6786245", "name": "CARNS1 transforms ATP, L-His, b-Ala to CARN", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-73590", "R-ALL-29612" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6786245", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6786245" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-29612", "participant_name": "L-His [cytosol]", "crossref": [ { "id": "57595", "database": "ChEBI", "url": "" }, { "id": "ZINC000006661227", "database": "ZINC", "url": "" }, { "id": "C00135", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-73590", "participant_name": "b-Ala [cytosol]", "crossref": [ { "id": "57966", "database": "ChEBI", "url": "" }, { "id": "ZINC000004658555", "database": "ZINC", "url": "" }, { "id": "C00099", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RUY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUY9" }, { "id": "PS50975", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50975" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ATP-grasp", "eco_id": "ECO_0000259", "start_pos": 633, "end_pos": 844, "start_aa": "Leu", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 566, "end_pos": 568 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RU36-1", "uniprot_ac": "F1RU36", "uniprot_id": "F1RU36_PIG", "mass": { "chemical_mass": 82758.0, "monoisotopic_mass": 82758.0 }, "refseq": {}, "gene_names": [ { "name": "CATSPER1", "type": "recommended", "evidence": [ { "id": "F1RU36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU36" } ] } ], "protein_names": [ { "name": "Cation channel sperm-associated protein 1", "type": "recommended", "evidence": [ { "id": "F1RU36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU36/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU36", "url": "https://www.uniprot.org/uniprotkb/F1RU36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CATSPER1", "url": "https://www.uniprot.org/uniprotkb/F1RU36", "locus": { "chromosome": "2", "start_pos": 6321690, 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"categories": [ "Protein Classification" ] }, { "id": "PTHR47193", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47193", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47193:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47193:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1300642", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300642", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "29671", "url": "https://www.rhea-db.org/rhea/29671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R024", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R024", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R024-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R024-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU36", "url": "https://www.uniprot.org/uniprotkb/F1RU36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU36-1", "url": "https://www.uniprot.org/uniprotkb/F1RU36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAKAQKEADTQDWDAFSRPGTSTPHHRAAQGRVDHHRESHSHHRRESHRVGRSHHPEAFQDFHDNASSHHSPHTPRGGGGEAHRQGGAHPSPSHGTLLSHQNYEQDRFDKEHRHGSRSHPRGPQHPKESHPSGGPHRPRESYHHGEFQHREVPHPSRFHHPGEPDHHKESPQPGAPHHSEASRHGGHHHHKAQHHGRSPIMGSYHQGLPPSHNEHHHGHRGHHGEHHPRERHPKQRHHSVHSDGYLQGDPLYEAFHRGDSHLFDSHMFSSEGSASLGSSYFHSMALRPIEPEKKSSALTLVQSGGRVRAPSSQTSSKVHPQESSSKTSESWPEEDEQIQNRKTGRVPRPHKKVHPVDLCYCLWEKLSHILWGLQRMLRKLTESLVFEAFIVFIICLNTVMLVAQTFAEVEIRGEWYFMALDSIFLCIYVVEAVLKIIALGFKYFCDPWNNLDFFIMAMAVLDFTLLQLYSPSPTRAVYSLSVFRIFKVFKSLRALRAIRVLRRLSFLTSLQKVTGTLARSLPSITAILILMFTCLFLFSVVLRALFRHSDPKRFQSILTTIFTLFTLLTLDDWSLIYLDSRAQGAWYIIPILMIYIIIQYFIFLNLVIAVLVDNFQMALLKGLEKEKQEAAQIHEKLLDDSLTELIEAEPEEVISEHTMQKQLIEKKFGSLTERQQELLFHFLQLVAGVEQYQQKFRSQASVIDEIVDTAFEAGEEDFRK", "length": 721, "header": "tr|F1RU36-1|F1RU36_PIG Isoform 1 of Cation channel sperm-associated protein 1 OS=Sus scrofa OX=9823 GN=CATSPER1 PE=3 SV=3 CANONICAL=F1RU36-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R024-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R024/entry", "sequence": { "sequence": "MAAKAQKEADTQDWDAFSRPGTSTPHHRAAQGRVDHHRESHSHHRRESHRVGRSHHPEAFQDFHDNASSHHSPHTPRGGGGEAHRQGGAHPSPSHGTLLSHQNYEQDRFDKEHRHGSRSHPRGPQHPKESHPSGGPHRPRESYHHGEFQHREVPHPSRFHHPGEPDHHKESPQPGAPHHSEASRHGGHHHHKAQHHGRSPIMGSYHQGLPPSHNEHHHGHRGHHGEHHPRERHPKQRHHSVHSDGYLQGDPLYEAFHRGDSHLFDSHMFSSEGSASLGSSYFHSMALRPIEPEKKSSALTLVQSGGRVRAPSSQTSSKVHPQESSSKTSESWPEEDEQIQNRKSESFSAAPHPPPPAVWPRFQALRRPCTSFPRSRSRLVFEWYFMALDSIFLCIYVVEAVLKIIALGFKYFCDPWNNLDFFIMAMAVLDFTLLQLYSPSPTRAVYSLSVFRIFKVFKSLRALRAIRVLRRLSFLTSLQKVTGTLARSLPSITAILILMFTCLFLFSVVLRALFRHSDPKRFQSILTTIFTLFTLLTLDDWSLIYLDSRAQGAWYIIPILMIYIIIQYFIFLNLVIAVLVDNFQMALLKGLEKEKQEAAQIHEKLLDDSLTELIEAEPEEVISEHTMQKQLIEKKFGSLTERQQELLFHFLQLVAGVEQYQQKFRSQASVIDEIVDTAFEAGEEDFRK", "length": 688, "header": "tr|A0A5G2R024-1|F1RU36_PIG Computationally mapped isoform of Cation channel sperm-associated protein 1 OS=Sus scrofa OX=9823 GN=CATSPER1 PE=3 SV=1 CANONICAL=F1RU36-1" }, "locus": { "chromosome": "2", "start_pos": 6321559, "end_pos": 6313004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078183.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078183.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070499.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070499.1" } ] } }, { "isoform_ac": "F1RU36-1", "url": "https://www.uniprot.org/uniprotkb/F1RU36/entry", "sequence": { "sequence": "MAAKAQKEADTQDWDAFSRPGTSTPHHRAAQGRVDHHRESHSHHRRESHRVGRSHHPEAFQDFHDNASSHHSPHTPRGGGGEAHRQGGAHPSPSHGTLLSHQNYEQDRFDKEHRHGSRSHPRGPQHPKESHPSGGPHRPRESYHHGEFQHREVPHPSRFHHPGEPDHHKESPQPGAPHHSEASRHGGHHHHKAQHHGRSPIMGSYHQGLPPSHNEHHHGHRGHHGEHHPRERHPKQRHHSVHSDGYLQGDPLYEAFHRGDSHLFDSHMFSSEGSASLGSSYFHSMALRPIEPEKKSSALTLVQSGGRVRAPSSQTSSKVHPQESSSKTSESWPEEDEQIQNRKTGRVPRPHKKVHPVDLCYCLWEKLSHILWGLQRMLRKLTESLVFEAFIVFIICLNTVMLVAQTFAEVEIRGEWYFMALDSIFLCIYVVEAVLKIIALGFKYFCDPWNNLDFFIMAMAVLDFTLLQLYSPSPTRAVYSLSVFRIFKVFKSLRALRAIRVLRRLSFLTSLQKVTGTLARSLPSITAILILMFTCLFLFSVVLRALFRHSDPKRFQSILTTIFTLFTLLTLDDWSLIYLDSRAQGAWYIIPILMIYIIIQYFIFLNLVIAVLVDNFQMALLKGLEKEKQEAAQIHEKLLDDSLTELIEAEPEEVISEHTMQKQLIEKKFGSLTERQQELLFHFLQLVAGVEQYQQKFRSQASVIDEIVDTAFEAGEEDFRK", "length": 721, "header": "tr|F1RU36-1|F1RU36_PIG Isoform 1 of Cation channel sperm-associated protein 1 OS=Sus scrofa OX=9823 GN=CATSPER1 PE=3 SV=3 CANONICAL=F1RU36-1" }, "locus": { "chromosome": "2", "start_pos": 6321559, "end_pos": 6313004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014164.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014164.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013778.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013778.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R024", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R024" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1300642", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1300642", "resource": "Reactome", "description": "Sperm Motility And Taxes" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A342-1", "protein_name": "Cation channel sperm-associated protein 1", "gene_name": "Catsper1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF05600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922750", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922750", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R2E2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2E2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2E2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHR0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWH6-1", "url": "https://www.uniprot.org/uniprotkb/F1RWH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQDHQHVPIDIQTSKLLDWLVDRRHCNLKWQSQVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRIVELLKGTEASTKNIFGRYSSQRMKDWQEIVALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAAAQSLGEAIDLYQACVGFVCESPEEQVLPMLRFVQTRGNGTVYEWRTGTEPSVVERPYLEEPPEQVEEDAIDWGDFGVEVASEGPDSGISAQAAEIDWGISLESDSKEAGGDEIDWGDDATALQITVLEAGTQAPEGVARGSDALTLLEYPETRNQFIDELMELESFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKAKTVSMVSALQDLIGRLTNLRMQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKELMVQKQQEALQEQAALEPKLDLLLEKTKELQKLIEADISKRYNGRPVNLMGTSL", "length": 505, "header": "tr|F1RWH6-1|F1RWH6_PIG Isoform 1 of CDK5 regulatory subunit associated protein 3 OS=Sus scrofa OX=9823 GN=CDK5RAP3 PE=1 SV=3 CANONICAL=F1RWH6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R2E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2E2/entry", "sequence": { "sequence": "AYNWLVDRRHCNLKWQSQVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRIVELLKGTEASTKNIFGRYSSQRMKDWQEIVALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAAAQSLGEAIDLYQACVGFVCESPEEQVLPMLRFVQTRGNGTVYEWRTGTEPSVVERPYLEEPPEQVEEDAIDWGDFGVEVASEGPDSGISAQAAEIDWGISLESDSKEAGGDEIDWGDDATALQITVLEAGTQAPEGVARGSDALTLLEYPETRNQFIDELMELESFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKAKTVSMVSALQDLIGRLTNLRMQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKELMVQKQQEALQEQAALEPKLDLLLEKTKELQKLIEADISKRYNGRPVNLMGTSL", "length": 490, "header": "tr|A0A5G2R2E2-1|F1RWH6_PIG Computationally mapped isoform of CDK5 regulatory subunit associated protein 3 OS=Sus scrofa OX=9823 GN=CDK5RAP3 PE=1 SV=2 CANONICAL=F1RWH6-1" }, "locus": { "chromosome": "12", "start_pos": 24234221, "end_pos": 24226361, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090426.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090426.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068367.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068367.2" } ] } }, { "isoform_ac": "A0A5G2RA32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA32/entry", "sequence": { "sequence": "AYWLVDRRHCNLKWQSQVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRIVELLKGTEASTKNIFGRYSSQRMKDWQEIVALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAAAQSLGEAIDLYQACVGFVCESPEEQVLPMLRFVQTRGNGTVYEWRTGTEPSVVERPYLEEPPEQVEEDAIDWGDFGVEVASEGPDSGISAQAAEIDWGISLESDSKEAGGDEIDWGDDATALQITVLEAGTQAPEGVARGSDALTLLEYPETRNQFIDELMELESFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKAKTVSMVSALQDLIGRLTNLRMQHLFMILASPRSAFPLDVGLSEGMLQSAAFLAALTPCFLLSMNPQTSPLPPATAPSQLGRGFSWGTMAAAGGSDVHGQGLLPRGDRDAGVLFLPGKD", "length": 497, "header": "tr|A0A5G2RA32-1|F1RWH6_PIG Computationally mapped isoform of CDK5 regulatory subunit associated protein 3 OS=Sus scrofa OX=9823 GN=CDK5RAP3 PE=1 SV=2 CANONICAL=F1RWH6-1" }, "locus": { "chromosome": "12", "start_pos": 24233766, "end_pos": 24226573, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075347.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075347.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073174.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073174.2" } ] } }, { "isoform_ac": "A0A8W4FHR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHR0/entry", "sequence": { "sequence": "DHQHVPIDIQTSKLLDWLVDRRHCNLKWQSQVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRIVELLKGTEASTKNIFGRYSSQRMKDWQEIVALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAAAQSLGEAIDLYQACVGFVCESPEEQVLPMLRFVQTRGNGTVYEWRTGTEPSVVERPYLEEPPEQVEEDAIDWGDFGVEVASEGPDSGISAQAAEIDWGISLESDSKEAGGDEIDWGDDATALQITVLEAGTQAPEGVARGSDALTLLEYPETRNQFIDELMELESFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKAKTVSMVSALQDLIGRLTNLRMQHLFMILASPRSAFPLDVGLSEGMLQSAAFLAALTPCFLLSMNPQTSPLPPATAPSQLGRGFSWGTMAAAGGSDVHGQGLLPRGDRDAGVLFLPGKD", "length": 511, "header": "tr|A0A8W4FHR0-1|A0A8W4FHR0_PIG Computationally mapped isoform of CDK5 regulatory subunit associated protein 3 OS=Sus scrofa OX=9823 GN=CDK5RAP3 PE=1 SV=1 CANONICAL=F1RWH6-1" }, "locus": { "chromosome": "12", "start_pos": 24233766, "end_pos": 24224611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097084.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097084.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078983.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078983.1" } ] } }, { "isoform_ac": "F1RWH6-1", "url": "https://www.uniprot.org/uniprotkb/F1RWH6/entry", "sequence": { "sequence": "MQDHQHVPIDIQTSKLLDWLVDRRHCNLKWQSQVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRIVELLKGTEASTKNIFGRYSSQRMKDWQEIVALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAAAQSLGEAIDLYQACVGFVCESPEEQVLPMLRFVQTRGNGTVYEWRTGTEPSVVERPYLEEPPEQVEEDAIDWGDFGVEVASEGPDSGISAQAAEIDWGISLESDSKEAGGDEIDWGDDATALQITVLEAGTQAPEGVARGSDALTLLEYPETRNQFIDELMELESFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKAKTVSMVSALQDLIGRLTNLRMQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKELMVQKQQEALQEQAALEPKLDLLLEKTKELQKLIEADISKRYNGRPVNLMGTSL", "length": 505, "header": "tr|F1RWH6-1|F1RWH6_PIG Isoform 1 of CDK5 regulatory subunit associated protein 3 OS=Sus scrofa OX=9823 GN=CDK5RAP3 PE=1 SV=3 CANONICAL=F1RWH6-1" }, "locus": { "chromosome": "12", "start_pos": 24234221, "end_pos": 24224382, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019078.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019078.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018572.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018572.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2E2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2E2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521291", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521291", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LKA0-1", "protein_name": "CDK5 regulatory subunit-associated protein 3 isoform X2", "gene_name": "Cdk5rap3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQDHQHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKDWQEIIGLYEKDNTYLVELSSLLVRNVSYEIPLLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGTQALGEAIDLYQACVEFVCDSPTEQVLPMLRYVQKQGNSTVYEWRTGTEPSVVERPQLEEPPEQVQEDEIDWGDFGAEAISDSAISVETPGIDWGISLESESKDAGSDRIDWGDDIAASEITVLETGTEAPEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKEKMLSLVSTLQDLIGRLTNLRMQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKELMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRYSGRPVNLMGTSL", "length": 502 }, "evidence": [ { "id": "F1RWH6", "url": "https://omabrowser.org/oma/group/F1RWH6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q95SK3-1", "protein_name": "CDK5RAP3 protein homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNESEIPIDIHTLKLQDWLISRRIVPKNVQQELREIHRKISNALQDMPSNEQLIKLLARTNINYYHVKEIIEILKQTEKDTKSVFGTYGSQRMKDWQEISRLYEKNATYLAETAQIFVRNVNYEIPGVRKQMARLEQQADETQKRAHDLNKPESQILADHSALLEQLGVKGDNLHAEFVQVLSGLPELYDKSLVGIANIQPGIDLYAEVSGNKQVLPILNHLVEFGNTTVYQYIHKEAPLAVEEPPIRLNLSEGNASKDDNAVAEIDFGTDDNGGTSSTVSAEIIDYGDFGSGDLPESDGGNIDWGIESAPTDAVEINFDIPVEEYGIVVEGTGMDGGTAKGDQAYTLLDSPNYRDRFLDEIYELESFLRMRIYELKQLESSSDIMFSLMDNIATHDGESIWKILVSVEKIIQQTSDKQTQHLFQLKHSPKYANMLATKLQQMTKAVEKLRATREALKQLTIELREQRQDLNPVLEELIAQTRTLQSHIEKDISKRYKNRVVNLMGGVN", "length": 509 }, "evidence": [ { "id": "F1RWH6", "url": "https://omabrowser.org/oma/group/F1RWH6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q96JB5-1", "protein_name": "CDK5 regulatory subunit-associated protein 3", "gene_name": "CDK5RAP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVEAVSEGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVARGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMGTSL", "length": 506 }, "evidence": [ { "id": "F1RWH6", "url": "https://omabrowser.org/oma/group/F1RWH6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99LM2-1", "protein_name": "CDK5 regulatory subunit-associated protein 3", "gene_name": "Cdk5rap3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQDHQHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKDWQEIVSLYEKDNTYLVELCSLLVRNVSYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPTEQVLPMLRYVQKKGNSTVYEWRTGTEPSVVERPQLEEPPEQVQEDEIDWGDFGVEAVSDSGIVAETPGIDWGISLESEAKDAGADKIDWGDDAAAASEITVLETGTEAPEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKEKMLSLVSTLQQLIGRLTSLRMQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRYSGRPVNLMGTSL", "length": 503 }, "evidence": [ { "id": "F1RWH6", "url": "https://omabrowser.org/oma/group/F1RWH6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FG23-1", "protein_name": "CDK5RAP3 protein homolog", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MPSQDDVQNLPIDITFSRLGEWLVDRKRIPADWRKRVAVIRVKILKEFSSLPKEIDPFFQTLDPEVIGYLEVKKVYEILLKTTPESRNIFGRLSGASGVWEAIVRAFEKDHIYLGEAAQIIIQNVNYEIPYLKKQVQKVQQQMTELDRKEADIKRSVALSATKYEDACRELGLQGNNVRRELLETASSLPSTFSKILEVINSDSVTGAMEYYSAYVQDVHTEKDKPLRIVLQNLKYIRENPPSLSVFGDSEGLDADNIQSSENANGTDAAADSIDWDITVETPEIDWDVSMVEEVDSGNDLGSYEIVNASDIPENSPFKVEESQGLEVDVSEISWDVSVETPQVEEIGDSALLESNQTQLTDSTTQVLGSGGERSQLLETEYRNKILDDLYEVKAFLNQRLIELRNEDTLSLQHHVQAVSPMVLQQYSPETIEPMVVDISMAISLLTNKKSRDLIMILNSKRFLDRLVSELEEKKHREVKLRESLKDVGRRRMELQNSLSAIWPKQEAALSKTRELKELCETSLSSMFDGRPVNIRGEINTLLNAGVSA", "length": 549 }, "evidence": [ { "id": "F1RWH6", "url": "https://omabrowser.org/oma/group/F1RWH6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JLH7-1", "protein_name": "CDK5 regulatory subunit-associated protein 3", "gene_name": "Cdk5rap3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQDHQHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKDWQEIISLYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQDYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGAQSLGEAIDLYQACVEFVCDSPTEQVLPMLRYVQPKGNSTVYEWRTGTEPSVVERPQLEDPPEQVQEDEIDWGDFGLEAVSDSGNIISAETPGIDWGISLESESKDAGADKIDWGDNAVASEITVLETGTEAPEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEADILSVSQFQLAPAILQGQTKEKMLSLVSTLQHLIGQLTSLDLQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKDLMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRYNGRPVNLMGTSV", "length": 504 }, "evidence": [ { "id": "F1RWH6", "url": "https://omabrowser.org/oma/group/F1RWH6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 14, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "definitive erythrocyte differentiation", "id": "GO:0060318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060318", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "liver development", "id": "GO:0001889", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001889", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "cell population proliferation", "id": "GO:0008283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008283", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "regulation of mitotic cell cycle", "id": "GO:0007346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007346", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "positive regulation of protein ubiquitination", "id": "GO:0031398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031398", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "negative regulation of protein catabolic process", "id": "GO:0042177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042177", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "endoplasmic reticulum unfolded protein response", "id": "GO:0030968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030968", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "apoptotic nuclear changes", "id": "GO:0030262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030262", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "positive regulation of protein localization to nucleus", "id": "GO:1900182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900182", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "positive regulation of signal transduction by p53 class mediator", "id": "GO:1901798", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901798", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "mitotic G2 DNA damage checkpoint signaling", "id": "GO:0007095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007095", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "protein ufmylation", "id": "GO:0071569", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071569", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "positive regulation of reticulophagy", "id": "GO:0140501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140501", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RWH6", "url": "https://www.uniprot.org/uniprotkb/F1RWH6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S1P2-1", "uniprot_ac": "F1S1P2", "uniprot_id": "F1S1P2_PIG", "mass": { "chemical_mass": 80230.0, "monoisotopic_mass": 80230.0 }, "refseq": { "ac": "XP_020935620", "name": "kelch-like protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935620" }, "gene_names": [ { "name": "KLHL4", "type": "recommended", "evidence": [ { "id": "F1S1P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1P2" } ] }, { "name": "KLHL4", "type": "synonym", "evidence": [ { "id": "XP_020935620", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935620" } ] } ], "protein_names": [ { "name": "Kelch like family member 4", "type": "synonym", "evidence": [ { "id": "F1S1P2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1P2/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020935620", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935620" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S1P2", "url": "https://www.uniprot.org/uniprotkb/F1S1P2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL4", "url": "https://www.uniprot.org/uniprotkb/F1S1P2", "locus": { "chromosome": "X", "start_pos": 70435109, "end_pos": 70334774, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012467", "url": "https://www.ensembl.org/id/ENSSSCG00000012467" } ] } } ], "crossref": [ { "id": "F1S1P2", "url": "https://alphafold.ebi.ac.uk/entry/F1S1P2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012467", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012467", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18510", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18510", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524840", "url": "https://www.ncbi.nlm.nih.gov/gene/100524840", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524840", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWTVMPP", "url": "https://omabrowser.org/oma/group/AWTVMPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R3W3", "url": "https://www.orthodb.org/?gene=A0A5G2R3W3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020935620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935620", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R3W3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3W3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1P2", "url": "https://www.uniprot.org/uniprotkb/F1S1P2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1P2-1", "url": "https://www.uniprot.org/uniprotkb/F1S1P2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVSGKKEFDVKQILRLRWRWFSHPSQGSPNTGNCLQQEGYEHRGTPVQGRLKSHPRDRNGLKKSNSPVHHSILAPVPGPAPAHQRALQNWHPQNLIEHLQANEDTPKAVPEENLFKKSCEKHSQDLEMMADDNTEDSTARLDTQHPKEMNVSRSEEQFHAVNHAEQTLHKMENYLKDKQLCDVLLIAGHLRIPAHRLVLSAVSDYFAAMFTNDVLEAKQEEVKMEGIDPNALNSLVQYAYTGVLQLKEDTIENLLAAACLLQLTQVVEVCSNFLIKQLHPSNCLGIRSFGDAQGCTELLSVAHKYTMEHFIEVIKNQEFLLLPANEISKLLCSDDINVPDEETIFHALMQWVGHDAQARQQDLAMLLSYIRLPLLPPQLLADLENSSMFTGDLECQKLLMEAMKYHLLPERRPMMQSPRTKPRKSTVGALYAVGGMDAMKGTTTIEKYDLRTNSWLHIGTMSGRRLQFGVAVIDNKLYVVGGRDGLKTLNTVECFNPVGKIWTVMPPMSTHRHGLGVATLEGPMYAVGGHDGWSYLNTVERWDPEGRQWNYVASMSTPRSTVGVVALNNKLYAIGGRDGSSCLRSMEYFDPHTNKWSLCAPMSKRRGGVGVATYNGFLYVVGGHDAPASNHCSRLSDCVERYDPKNDSWSTVAPLSVPRDAVAVCPLGDKLYVVGGYDGHTYLNTVESYDAQKDEWKEEVPVNIGRAGACVVVVKLP", "length": 718, "header": "tr|F1S1P2-1|F1S1P2_PIG Isoform 1 of Kelch like family member 4 OS=Sus scrofa OX=9823 GN=KLHL4 PE=4 SV=3 CANONICAL=F1S1P2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R3W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3W3/entry", "sequence": { "sequence": "MSVSGKKEFDVKQILRLRWRWFSHPSQGSPNTGNCLQQEGYEHRGTPVQGRLKSHPRDRNGLKKSNSPVHHSILAPVPGPAPAHQRALQNWHPQNLIEHLQANEDTPKAVPEENLFKKSCEKHSQDLEMMADDNTEDSTARLDTQHPKEMNVSRSEEQFHAVNHAEQTLHKMENYLKDKQLCDVLLIAGHLRIPAHRLVLSAVSDYFAAMFTNDVLEAKQEEVKMEGIDPNALNSLVQYAYTGVLQLKEDTIENLLAAACLLQLTQVVEVCSNFLIKQLHPSNCLGIRSFGDAQGCTELLSVAHKYTMEHFIEVIKNQEFLLLPANEISKLLCSDDINVPDEETIFHALMQWVGHDAQARQQDLAMLLSYIRLPLLPPQLLADLENSSMFTGDLECQKLLMEAMKYHLLPERRPMMQSPRTKPRKSTVGALYAVGGMDAMKGTTTIEKYDLRTNSWLHIGTMSGRRLQFGVAVIDNKLYVVGGRDGLKTLNTVECFNPVGKIWTVMPPMSTHRHGLGVATLEGPMYAVGGHDGWSYLNTVERWDPEGRQWNYVASMSTPRSTVGVVALNNKLYAIGGRDGSSCLRSMEYFDPHTNKWSLCAPMSKRRGGVGVATYNGFLYVVGGHDAPASNHCSRLSDCVERYDPKNDSWSTVAPLSVPRDAVAVCPLGDKLYVVGGYDGHTYLNTVESYDAQKDEWKEGIQKLLNTFSTAKELKETLGH", "length": 720, "header": "tr|A0A5G2R3W3-1|F1S1P2_PIG Computationally mapped isoform of Kelch like family member 4 OS=Sus scrofa OX=9823 GN=KLHL4 PE=4 SV=1 CANONICAL=F1S1P2-1" }, "locus": { "chromosome": "X", "start_pos": 70435106, "end_pos": 70334973, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088368.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088368.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071898.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071898.1" } ] } }, { "isoform_ac": "F1S1P2-1", "url": "https://www.uniprot.org/uniprotkb/F1S1P2/entry", "sequence": { "sequence": "MSVSGKKEFDVKQILRLRWRWFSHPSQGSPNTGNCLQQEGYEHRGTPVQGRLKSHPRDRNGLKKSNSPVHHSILAPVPGPAPAHQRALQNWHPQNLIEHLQANEDTPKAVPEENLFKKSCEKHSQDLEMMADDNTEDSTARLDTQHPKEMNVSRSEEQFHAVNHAEQTLHKMENYLKDKQLCDVLLIAGHLRIPAHRLVLSAVSDYFAAMFTNDVLEAKQEEVKMEGIDPNALNSLVQYAYTGVLQLKEDTIENLLAAACLLQLTQVVEVCSNFLIKQLHPSNCLGIRSFGDAQGCTELLSVAHKYTMEHFIEVIKNQEFLLLPANEISKLLCSDDINVPDEETIFHALMQWVGHDAQARQQDLAMLLSYIRLPLLPPQLLADLENSSMFTGDLECQKLLMEAMKYHLLPERRPMMQSPRTKPRKSTVGALYAVGGMDAMKGTTTIEKYDLRTNSWLHIGTMSGRRLQFGVAVIDNKLYVVGGRDGLKTLNTVECFNPVGKIWTVMPPMSTHRHGLGVATLEGPMYAVGGHDGWSYLNTVERWDPEGRQWNYVASMSTPRSTVGVVALNNKLYAIGGRDGSSCLRSMEYFDPHTNKWSLCAPMSKRRGGVGVATYNGFLYVVGGHDAPASNHCSRLSDCVERYDPKNDSWSTVAPLSVPRDAVAVCPLGDKLYVVGGYDGHTYLNTVESYDAQKDEWKEEVPVNIGRAGACVVVVKLP", "length": 718, "header": "tr|F1S1P2-1|F1S1P2_PIG Isoform 1 of Kelch like family member 4 OS=Sus scrofa OX=9823 GN=KLHL4 PE=4 SV=3 CANONICAL=F1S1P2-1" }, "locus": { "chromosome": "X", "start_pos": 70431119, "end_pos": 70334973, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013634.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013634.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013266.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013266.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3W3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3W3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524840", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B1AZR0-1", "protein_name": "Kelch-like 4", "gene_name": "Klhl4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVSGKKEFDVKQILRLRWRWFSHPSQGSPNTGSCLQQEGYEHRGTPVQGRLKNHSRDRNGLKKSNSPVHHDILTPVPGPAPTHQRVLQNWHQQNVIVHLQANEDTPKAVPEGNLLKEACEKRSRDLEMMGDDNIEDMRAGPCVEEPEQMTTSSNDHYRSRSHADYTLCKMESYLKERKLCDVLLIAGPLKIPAHRLVLSAVSDYFAAMFTNDVLEARQEEVKIEGVDPNALNSLVQYAYTGVLQLREDTIENLLSAACLLQLTQVIDVCCNFLIKQLHPSNCLGIRSFGDAQGCMELQNVAHKYAMEHFIDVIKNQEFLLLPANEISKLLCSDDINVPDEETIFHALMQWVGHDAQARQRDLAKLLSYIRLPLLSPQLLADLENSSFFSGNLECQKLLMEAMKYHLLPERRSMLQSPRTKPRKSTVGALYAVGGMDAAKGTTTIEKYDLRTNSWIHIGTMSGRRLQFGVAVVDNKLYVVGGRDGLKTLNTVECFNPVTKTWVVMPPMSTHRHGLGVATLEGPMYAVGGHDGWSYLNTVERWDPDGRQWNYVASMSTPRSTVGVVALNNRLYAIGGRDGSSCLKSMEFFDPHTNKWSLCAPMSKRRGGVGVATHNGYLYVVGGHDAPAPNHCSRLSDCVERYDPKGDSWSTVAPLSVPRDAVAVCPLGDKLYVVGGYDGHTYLNTVESYDAQKDEWKEEVPVNIGRAGACVVVVKLQ", "length": 717 }, "evidence": [ { "id": "F1S1P2", "url": "https://omabrowser.org/oma/group/F1S1P2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B8JIG8-1", "protein_name": "Kelch-like protein 5", "gene_name": "klhl5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSNPRKDFDVKQILRIRWRWFGHPTSPPSPGNQPSGDLFSNSGGSGNSSRGNGGASSGGDQPSLGGCSSSNAAAGASSSNGNLSSNINNSRKFGDSGPNSGHSAAAVVISGTACPRSMSQQECRSSPPAPWVFPVHSRSSESLEPLQQQPQQPQQQPQKQQSTRAPDASGPGDEENNNNVESDSSSCRTSNSSVTLSSCASMEPCVSDEHFQAHSHAEHTFRRMEAYLRTRKLCDVVLLAGDRRIPAHRLVLSSVSDYFAAMFTSDVREAKQEEIKMEGVDPDALWVLVQYAYTGRLELREDTIESLLSGSCLLQLSAVVQACCSYLMKQLHPSNCLGIRSFADAQGCLDLHKVAHNYTMEHFMEVMRHQEFLLLPSCEVEKLLASDDMNVPEEETVVTALLSWVRHDVTTRQSQLSALLAHIRLPLLKPQFLADMEANPLLRDSVECQRLVMEAMKYHLLPERRPLLQSPRTRPRKATVGALFAVGGMDATKGATSIEQYCLRRDTWRQVAVMSGRRLQFGVAVLDDRLYVVGGRDGLKTLNTVECYNPRSKSWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLSTVERWDPQARQWSFVASMATPRSTVGVAVLNSKLYAVGGRDGSSCLKSVECFDPHTNKWSSCAPMSKRRGGVGVATWNGFLYAIGGHDAPASSLASRLSDCVERYDPKTDMWTAVAPMSLSRDAVGVCLLGDRLYAVGGYDGQVYLNTVEAYDPQTNEWTQVAPLCLGRAGACVVAVKL", "length": 769 }, "evidence": [ { "id": "F1S1P2", "url": "https://omabrowser.org/oma/group/F1S1P2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZHI3-1", "protein_name": "Kelch-like family member 4", "gene_name": "Klhl4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVSGKKEFDVKQILRLRWRWFSHPSQGSPNTGSCLQQEGYEHRGTPVQGRLKNHSRDRNGLKKSNSPVHHDILTPVPGPAPTHQRVLQNWHQQNVIVHLQANEDTPKAVPEGNLLKEACEKRARDLEMMGDDNIEDSRARQYAEEPEQMNVISEDHYRSRNHADYTLCKMESYLKEKKLCDVLLIAGPLKIPAHRLVLSAVSDYFAAMFTNDVLEARQEEVKMEGVDPNALNSLVQYAYTGVLQLREDTIENLLSAACLLQLTQVIDVCCNFLIKQLHPSNCLGIRSFGDAQGCMELQNVAHKYTMEHFIDVVKNQEFLLLPANEISKLLCSDDINVPDEETIFHALMQWVGHDAQARQQDLAKLLSYIRLPLLSPQLLADLENSSMFSGDLECQKLLMEAMKYHLLPERRSMLQSPRTKPRKSTVGALYAVGGMDAAKGTTTIEKYDLRTNSWIHIGTMSGRRLQFGVAVVDNKLYVVGGRDGLKTLNTVECFNPVTKTWVVMPPMSTHRHGLGVATLEGPMYAVGGHDGWSYLNTVERWDPDGRQWNYVASMSTPRSTVGVVALNNKLYAIGGRDGSSCLKSMEYFDPHTNKWSLCAPMSKRRGGVGVATHNGYLYVVGGHDAPAPNHCSRLSDCVERYDPKSDSWSTVAPLSVPRDAVAVCPLGDKLYVVGGYDGHTYLNTVESYDAQKDEWKEEVPVNIGRAGACVVVVKLH", "length": 717 }, "evidence": [ { "id": "F1S1P2", "url": "https://omabrowser.org/oma/group/F1S1P2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9C0H6-1", "protein_name": "Kelch-like protein 4", "gene_name": "KLHL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVSGKKEFDVKQILRLRWRWFSHPFQGSTNTGSCLQQEGYEHRGTPVQGRLKSHSRDRNGLKKSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHFQANEDTPKSVPEKNLFKEACEKRAQDLEMMADDNIEDSTARLDTQHSEDMNATRSEEQFHVINHAEQTLRKMENYLKEKQLCDVLLIAGHLRIPAHRLVLSAVSDYFAAMFTNDVLEAKQEEVRMEGVDPNALNSLVQYAYTGVLQLKEDTIESLLAAACLLQLTQVIDVCSNFLIKQLHPSNCLGIRSFGDAQGCTELLNVAHKYTMEHFIEVIKNQEFLLLPANEISKLLCSDDINVPDEETIFHALMQWVGHDVQNRQGELGMLLSYIRLPLLPPQLLADLETSSMFTGDLECQKLLMEAMKYHLLPERRSMMQSPRTKPRKSTVGALYAVGGMDAMKGTTTIEKYDLRTNSWLHIGTMNGRRLQFGVAVIDNKLYVVGGRDGLKTLNTVECFNPVGKIWTVMPPMSTHRHGLGVATLEGPMYAVGGHDGWSYLNTVERWDPEGRQWNYVASMSTPRSTVGVVALNNKLYAIGGRDGSSCLKSMEYFDPHTNKWSLCAPMSKRRGGVGVATYNGFLYVVGGHDAPASNHCSRLSDCVERYDPKGDSWSTVAPLSVPRDAVAVCPLGDKLYVVGGYDGHTYLNTVESYDAQRNEWKEEVPVNIGRAGACVVVVKLP", "length": 718 }, "evidence": [ { "id": "F1S1P2", "url": "https://omabrowser.org/oma/group/F1S1P2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": 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"https://www.uniprot.org/uniprotkb/F1S1A5", "locus": { "chromosome": "12", "start_pos": 38855036, "end_pos": 38841849, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017696", "url": "https://www.ensembl.org/id/ENSSSCG00000017696" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017696", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017696", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623319", "url": "https://www.ncbi.nlm.nih.gov/gene/100623319", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031668", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031668", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623319", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623319", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FIIFEVP", "url": "https://omabrowser.org/oma/group/FIIFEVP/", "database": "OMA", "categories": [ "Protein 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1A5-1", "url": "https://www.uniprot.org/uniprotkb/F1S1A5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTILVFSLIITSYDAHKKELRDSSCQVEPLPSLFPKDVRSIRDVLMREAQAEAKRSTFIQNQTVAILQCIGLGSKVKINLAYSEKRGKVKHTLKSLTIVAVPHGNSTASPSCHLTPTSKLQTGSLVIGKAFLPGISQCKAYPVMGASSETFPATTPSITPGNKEREKTTSTDDFSTPLKQDTDEDLKKRQKWSILVKFLIAIILLLGGIAITVFVIFEVPCPTQCLRVREQCRCHRLWRRQKKEGQQPGEAEAQPDSQPKKVGQDVPNSSSPRKAAETTVVHQTYF", "length": 287, "header": "tr|F1S1A5-1|F1S1A5_PIG Isoform 1 of Chromosome 12 C17orf78 homolog OS=Sus scrofa OX=9823 GN=C17orf78 PE=4 SV=2 CANONICAL=F1S1A5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R472-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R472/entry", "sequence": { "sequence": "MDTILVFSLIITSYDAHKKELRDSSCQVEPLPSLFPKDVRSIRDVLMREAQAEAKRSTFIQNQTVAILQCIGLGSKVKINLAYSEKRGKVKHTLKSLTIVAVPHGNSTASPSCHLTPTSKLQTGSLVIGKDSMPKSQRAMQMPSVVEKAKEGRPATWGS", "length": 159, "header": "tr|A0A5G2R472-1|F1S1A5_PIG Computationally mapped isoform of Chromosome 12 C17orf78 homolog OS=Sus scrofa OX=9823 GN=C17orf78 PE=4 SV=1 CANONICAL=F1S1A5-1" }, "locus": { "chromosome": "12", "start_pos": 38850181, "end_pos": 38841933, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080841.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080841.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071133.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071133.1" } ] } }, { "isoform_ac": "F1S1A5-1", "url": "https://www.uniprot.org/uniprotkb/F1S1A5/entry", "sequence": { "sequence": "MDTILVFSLIITSYDAHKKELRDSSCQVEPLPSLFPKDVRSIRDVLMREAQAEAKRSTFIQNQTVAILQCIGLGSKVKINLAYSEKRGKVKHTLKSLTIVAVPHGNSTASPSCHLTPTSKLQTGSLVIGKAFLPGISQCKAYPVMGASSETFPATTPSITPGNKEREKTTSTDDFSTPLKQDTDEDLKKRQKWSILVKFLIAIILLLGGIAITVFVIFEVPCPTQCLRVREQCRCHRLWRRQKKEGQQPGEAEAQPDSQPKKVGQDVPNSSSPRKAAETTVVHQTYF", "length": 287, "header": "tr|F1S1A5-1|F1S1A5_PIG Isoform 1 of Chromosome 12 C17orf78 homolog OS=Sus scrofa OX=9823 GN=C17orf78 PE=4 SV=2 CANONICAL=F1S1A5-1" }, "locus": { "chromosome": "12", "start_pos": 38852684, "end_pos": 38841933, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019261.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019261.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018751.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018751.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R472", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R472" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623319", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623319", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6H7F9-1", "protein_name": "Uncharacterized protein C17orf78 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDTILVFSLIITSYNVTKKELRDSSCQVEPLPDLFPKDVRSIRAELIREAQAEAKRPMFIQNQTVAILQCLGSGSKVKVNLVHSEKRQKVKHILKNLRVMTVPCRNSTAPPSCHLTPASKVQAGFLVTGKAFLPGVSQCKVYPVMGASSETYPSTTTSVTPGKKGEKTTKVDGFSSPLNQDTDENLEKRKKWSIVVKVLIAVTLFVSGIAITVFVIFEVPCPSRCQQVRELCQCQRLRRRPRKEDQQPGTAESQSDTQPKKVGQEAPNSSSPKKAVEITVVHQTYF", "length": 286 }, "evidence": [ { "id": "F1S1A5", "url": "https://omabrowser.org/oma/group/F1S1A5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A521-1", "protein_name": "Similar to human chromosome 17 open reading frame 78", "gene_name": "C10h17orf78", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTILVFSLMIASYDSNKNDLRKSSCQVEQLPSFFPEDVRSNRDLVIRVPPEIHTDIKGAPFIRNQTIATLQCLGSRRRVTVHLVYSERRPKVKYILKNRPVATDLPRNRTASPSCHLRPTSQFQNGFLLTAFLPGISQCTVYPAKDRSALSETVPVTAISTSLRRKGEETPSTGAFPIPLTQDIDLSLKRRQKWSIVVKALIAATLLLSGAAIIVFVIFEVPCPCQCLRARRLCQRQWLWRRERKEEDQQPGTTESKLDSQPEKESILCIVGQDVPNSSASKKTTGTTVIHQTYF", "length": 296 }, 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Computationally mapped isoform of Regulator of microtubule dynamics protein 1 OS=Sus scrofa OX=9823 GN=RMDN1 PE=1 SV=2 CANONICAL=F1RXD4-1" }, "locus": { "chromosome": "4", "start_pos": 50382771, "end_pos": 50344997, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077534.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077534.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065171.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065171.2" } ] } }, { "isoform_ac": "F1RXD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RXD4/entry", "sequence": { "sequence": "MALTLRLWRSLPLGRSSARALRLPTGAAGSRGRCVPWPLRGSEVMGNTGAFKRSLLISALSYLGFETYQVLFQSSVVHATAKVTRVEEILEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDIAQLSGTSEEEKKLLVYEALEYAKRALEKNESSFAAHKKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKMLFAAPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDKQVQTEAAQLLTGFSNKN", "length": 287, "header": "tr|F1RXD4-1|F1RXD4_PIG Isoform 1 of Regulator of microtubule dynamics protein 1 OS=Sus scrofa OX=9823 GN=RMDN1 PE=1 SV=2 CANONICAL=F1RXD4-1" }, "locus": { "chromosome": "4", "start_pos": 50382771, "end_pos": 50344997, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006729.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006729.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006546.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006546.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QK40", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QK40" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RXD4", "url": "https://www.uniprot.org/uniprotkb/F1RXD4" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RXD4", "url": "https://www.uniprot.org/uniprotkb/F1RXD4" } ], "pmid": "" }, { "name": 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S0N9-1", "uniprot_ac": "F1S0N9", "uniprot_id": "F1S0N9_PIG", "mass": { "chemical_mass": 444489.0, "monoisotopic_mass": 444489.0 }, "refseq": { "ac": "XP_020946267", "name": "vacuolar protein sorting-associated protein 13B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946267" }, "gene_names": [ { "name": "VPS13B", "type": "recommended", "evidence": [ { "id": "F1S0N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ] }, { "name": "VPS13B", "type": "synonym", "evidence": [ { "id": "XP_020946267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946267" } ] } ], "protein_names": [ { "name": "Vacuolar protein sorting 13 homolog B", "type": "synonym", "evidence": [ { "id": "F1S0N9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0N9/entry#names_and_taxonomy" } ] }, { "name": "vacuolar protein sorting-associated protein 13B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020946267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946267" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VPS13B", "url": "https://www.uniprot.org/uniprotkb/F1S0N9", "locus": { "chromosome": "4", "start_pos": 37090936, "end_pos": 37820419, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006071", "url": "https://www.ensembl.org/id/ENSSSCG00000006071" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006071", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006071", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152362", "url": "https://www.ncbi.nlm.nih.gov/gene/100152362", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152362", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152362", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFYMPRI", "url": "https://omabrowser.org/oma/group/SFYMPRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZQY2", "url": "https://www.orthodb.org/?gene=A0A286ZQY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12517", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12517", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12517:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12517:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946267", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946267", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZQY2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0N9-1", "url": "https://www.uniprot.org/uniprotkb/F1S0N9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTTENTKSSVKPRRIQQAAPADPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEESACHNKDVLGNVTGAEDETRLDMQYPSQYKGQELYSQQEDEQPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPTSTTHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAMCLKGIMGVKDFEENMNRSETEACFFICGENLSIKGLTYLTNSLFDYRSPENNGTRAEFILDAASHKETYTEIAGMQRFGAFYMDYLYTMENTNGKGSANQQDFSSGRSEDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCSLEHEYEPYSRLKPDTKDESETVLNPEEVASLEEYIPTRHTSVTLLKCTFTIFMAEFNLLDHLLPVIMGEKNSSNFMNTTNFQSLRPLPSIQILVDKINLEHSVPMYAEQLVHVVSGLTQPSDNLLHYCYAHCYLKIFGFQAGLTSLDCKGSYCLPVPIIPSFSTALYGKLLKLPTCWAKRSQIAITEGIFELPNLTIQATRAQTLLLQAIYQSWSHTGNVSSLAVNEALMNEVFQSIGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTMGSIKICAKAPGDNGKEKLIPLLQGPSDTKDLHSSKWLNESRKPESLLAPDLIAFTVQVPQYMDYCHSSGAVLLCSIQGLAVNIDPILYTWLIYQPQRRTSKHMQQQPVIPVPLVVPISRRKEDEVSVGSAPLAKQQSYQASEYASSPIKTKTVTESRPLSVPMKAMLNISEGCRSPEERMKEFIGVVWNAVKSLTLQLEVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSMPGMLVLCLPQIKIVSAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLFGKQVTLCLVEPMGCTSTLAVTSQKLLTAGPDTRHSFVVCLHVDLESLEIKCSNPQVQLLYELTDIMNKVWCKIQRRGNLSPSSAHPESLAGPVPSSPVRSSIGTAPPDTSTCSPSADIGTTTEGDSVQALDDSPFSDSVTLEQTTSNIGGSSGRISLWMQWVLPKITIKLFAPDPENKGTELCMVSELEDLSASIDVQDVYTKVKCKIESFNIDHYRSRPGEGWQSGHFEGVFLQCKEKPVTTAKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFHKLSEGLTDGSPHFLHEILLSAQAFDIVLCFPLLNAIASIFQAKLPKTQKEKRKSPGQPMRTHTLTSRNLPLIYINTSVIRIFVPKTEEVQPSIEVNQAAKEDTMVLKIGSVAMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWDQLKPEKESGTGGVLTENERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENMHTEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLAPSSKATEISKQEQKKMDAYDGSMAETSSRYSGAQDSGIGSDSVKIRIVQIEQHSGTSQHRIARPSRQSSIVKNLNFIPFDIFITASRISLMTYSCTALPKSKSQEQKDNEKTGKSSLNLPEVDSDITKPSQACISMVTADDLLSSNVSFPSGKKIGVISLESLHASTRSSARQALGVTIVRQPGRRGTGDLQLEPFLYFIVSQPSLLLSCHHRKQRVEVSIFDAVLKGVASDYKCTDPGKTLPEALDYCTVWLQTVPGEIDSKSGIPPSLVTLQIKDFLNGPADIHLDISKPLKANVSFTKLDQINNFLKKIQSAHCRETSALSDTMPNKDELPASRCYRGKLSKLKVHGDGTQKIPFTENVWKTVSCFQKISVHTTQLVVSMETVPHPNKPCLLASLSTFSGSLNVKATQKVPGVILGSSFVLSVNDFLLKTSLKERSRVLIGPCCATANLEAKWCKHSGNPGPEQSIPKISIDLRGGLLQVFWGQEHLNCLVLLHELLNGYLNEEGAFDVQASEAVPQMPSPKEKNQMFKGEQSSDDLRTGLFQYIRDAEPLKMPGVYEVLFYNETEDSPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDMLQIPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSACDQLVTPTALAACTRVDSCFTPWFVPSLCISFQFSHLEFHLCHHLDQLGTAPPQYLQPFVSDKNVPTELEYMIISFREPHIYLRQWNNSSVCQEIQFSAHADCKLLECRNVTMQSLVKPFSIFGQVAVSSSAAEKLIDCAIVIDSVFVNFGQHVVHSLNTAVQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVQQLSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENSELTELCVRAKGDEDWSRDVCLESKAPEYSVVIQVPSSNSSIIYVWCTVLTLEPSSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQVIPGKGQEKPLQNIEPDLVHHLTFQAREEDDPSHCAVPISTSLIKQIATKIHPGGTVNQILDEFYGPEKSLQPTWPYNKKDSDRNEQLSQWDSPMRVKLSAWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIILQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNLTSPKWKDGGNGEVVSLDEEGFVDAEITLGAFPGHQKLCQFCISSMVQQGIQVIQIEDKTTIINNTPYQIFYKPQLSVSTPQSGKEYFHIPDGATFSLHPGGEQPAVTFSSLPCWDLRPDISQSALDASLLQKQILLAFAPAAAANSSQYWSLPAVVRQEFPRQSVAVPLGSCGENGFCTRAIALTYQEHFGVTYLTLSEDPSPRIIFHNRCPVTILIKENIKDIPKFEVYCRKIPPECSVHHELYHQMSSYPDCKTRDLLPSLLLRVELLEEMTTEWSDAIDINNQGTQVVFLTGFGCVYVDTVHQGGTIFITVAPEGKAGPILTNTHRTPEKIMALRMVITQLSVAVLDDLTHHRVSSELLRLTLDNVFLRLAPVAGHLPGEEAAAAPVHLYCVEVCCGDLQLDNQLYNKSNFHFAVLVCQGEKTEPSPCAKMQSLLVSSHDLEEYRKKCFIKFCLTLAEGKSCSFDINEFSFELKPARLYVEDTFVYYVKTLFETYLPSGGPATHAPLLAGGTQGLPLQVRQHARALVHPVRLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGIADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAHASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRYQPGDLHADQAPNSHAKYVWKMLQSLGRPEVHMTLDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEIDCAQDSKQSNLLIVQLKQPRVACDVEVDGTRERLSEQQYNRLVDYITKTSCHLAPSCSFVQTPCPVVAVEPLPSTVKTYHYMVDPPFAQVFISKFTMVKNKALRKGFP", "length": 3993, "header": "tr|F1S0N9-1|F1S0N9_PIG Isoform 1 of Vacuolar protein sorting 13 homolog B OS=Sus scrofa OX=9823 GN=VPS13B PE=3 SV=4 CANONICAL=F1S0N9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY2/entry", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTTENTKSSVKPRRIQQAAPADPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEESACHNKDVLGNVTGAEDETRLDMQYPSQYKGQELYSQQEDEQPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPTSTTHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAMCLKGIMGVKDFEENMNRSETEACFFICGENLSIKGLTYLTNSLFDYRSPENNGTRAEFILDAASHKETYTEIAGMQRFGAFYMDYLYTMENTNGKGSANQQDFSSGRSEDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCSLEHEYEPYSRLKPDTKDESETVLNPEEVASLEEYIPTRHTSVTLLKCTFTIFMAEFNLLDHLLPVIMGEKNSSNFMNTTNFQSLRPLPSIQILVDKINLEHSVPMYAEQLVHVVSGLTQPSDNLLHYCYAHCYLKIFGFQAGLTSLDCKGSYCLPVPIIPSFSTALYGKLLKLPTCWAKRSQIAITEGIFELPNLTIQATRAQTLLLQAIYQSWSHTGNVSSLAVNEALMNEVFQSIGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTMGSIKICAKAPGDNGKEKLIPLLQGPSDTKDLHSSKWLNESRKPESLLAPDLIAFTVQVPQYMDYCHSSGAVLLCSIQGLAVNIDPILYTWLIYQPQRRTSKHMQQQPVIPVPLVVPISRRKEDEVSVGSAPLAKQQSYQASEYASSPIKTKTVTESRPLSVPMKAMLNISEGCRSPEERMKEFIGVVWNAVKSLTLQLEVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSMPGMLVLCLPQIKIVSAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLFGKQVTLCLVEPMGCTSTLAVTSQKLLTAGPDTRHSFVVCLHVDLESLEIKCSNPQVQLLYELTDIMNKVWCKIQRRGNLSPSSAHPESLAGPVPSSPVRSSIGTAPPDTSTCSPSADIGTTTEGDSVQALDDSPFSDSVTLEQTTSNIGGSSGRISLWMQWVLPKITIKLFAPDPENKGTELCMVSELEDLSASIDVQDVYTKVKCKIESFNIDHYRSSLGEECWSLGQCGGVFLSCTDKLNRRTLLVRPISKQDPFSNCSGFFPSTTAKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFHKLSEGLTDGSPHFLHEILLSAQAFDIVLCFPLLNAIASIFQAKLPKTQKEKRKSPGQPMRTHTLTSRNLPLIYINTSVIRIFVPKTEEVQPSIEVNQAAKEDTMVLKIGSVAMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWDQLKPEKESGTGGVLTENERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENMHTEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLAPSSKATEISKQEQKKMDAYDGSMAETSSRYSGAQDSGIGSDSVKIRIVQIEQHSGTSQHRIARPSRQSSIVKNLNFIPFDIFITASRISLMTYSCTALPKSKSQEQKDNEKTGKSSLNLPEVDSDITKPSQACISMVTADDLLSSNVSFPSGKKIGVISLESLHASTRSSARQALGVTIVRQPGRRGTGDLQLEPFLYFIVSQPSLLLSCHHRKQRVEVSIFDAVLKGVASDYKCTDPGKTLPEALDYCTVWLQTVPGEIDSKSGIPPSLVTLQIKDFLNGPADIHLDISKPLKANVSFTKLDQINNFLKKIQSAHCRETSALSDTMPNKDELPASRCYRGKLSKLKVHGDGTQKIPFTENVWKTVSCFQKISVHTTQLVVSMETVPHPNKPCLLASLSTFSGSLNVKATQKVPGVILGSSFVLSVNDFLLKTSLKERSRVLIGPCCATANLEAKWCKHSGNPGPEQSIPKISIDLRGGLLQVFWGQEHLNCLVLLHELLNGYLNEEGAFDVQASEAVPQMPSPKEKNQMFKGEQSSDDLRTGLFQYIRDAEPLKMPGVYEVLFYNETEDSPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDMLQIPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSACDQLVTPTALAACTRVDSCFTPWFVPSLCISFQFSHLEFHLCHHLDQLGTAPPQYLQPFVSDKNVPTELEYMIISFREPHIYLRQWNNSSVCQEIQFSAHADCKLLECRNVTMQSLVKPFSIFGQVAVSSSAAEKLIDCAIVIDSVFVNFGQHVVHSLNTAVQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVQQLSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENSELTELCVRAKGDEDWSRDVCLESKAPEYSVVIQVPSSNSSIIYVWCTVLTLEPSSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQVIPGKGQEKPLQNIEPDLVHHLTFQAREEDDPSHCAVPISTSLIKQIATKIHPGGTVNQILDEFYGPEKSLQPTWPYNKKDSDRNEQLSQWDSPMRVKLSAWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIILQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNLTSPKWKDGGNGEVVSLDEEGFVDAEITLGAFPGHQKLCQFCISSMVQQGIQVIQIEDKTTIINNTPYQIFYKPQLSVSTPQSGKEYFHIPDGATFSLHPGGEQPAVTFSSLPCWDLRPDISQSALDASLLQKQILLAFAPAAAANSSQYWSLPAVVRQEFPRQSVAVPLGSCGENGFCTRAIALTYQEHFGVTYLTLSEDPSPRIIFHNRCPVTILIKENIKDIPKFEVYCRKIPPECSVHHELYHQMSSYPDCKTRDLLPSLLLRVELLEEMTTEWSDAIDINNQGTQVVFLTGFGCVYVDTVHQGGTIFITVAPEGKAGPILTNTHRTPEKIMALRMVITQLSVAVLDDLTHHRVSSELLRLTLDNVFLRLAPVAGHLPGEEAAAAPVHLYCVEVCCGDLQLDNQLYNKSNFHFAVLVCQGEKTEPSPCAKMQSLLVSSHDLEEYRKKCFIKFCLTLAEGKSCSFDINEFSFELKPARLYVEDTFVYYVKTLFETYLPSGGPATHAPLLAGGTQGLPLQVRQHARALVHPVRLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGIADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAHASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRYQPGDLHADQAPNSHAKYVWKMLQSLGRPEVHMTLDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEIDCAQDSKQSNLLIVQLKQPRVACDVEVDGTRERLSEQQYNRLVDYITKTSCHLAPSCSFVQTPCPVVAVEPLPSTVKTYHYMVDPPFAQVFISKFTMVKNKALRKGFP", "length": 4018, "header": "tr|A0A286ZQY2-1|F1S0N9_PIG Computationally mapped isoform of Vacuolar protein sorting 13 homolog B OS=Sus scrofa OX=9823 GN=VPS13B PE=3 SV=1 CANONICAL=F1S0N9-1" }, "locus": { "chromosome": "4", "start_pos": 37819685, "end_pos": 37091457, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053310.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053310.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033987.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033987.1" } ] } }, { "isoform_ac": "F1S0N9-1", "url": "https://www.uniprot.org/uniprotkb/F1S0N9/entry", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTTENTKSSVKPRRIQQAAPADPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEESACHNKDVLGNVTGAEDETRLDMQYPSQYKGQELYSQQEDEQPQGWVSWAWSFVPAIVSYDDGEEDYLGNDPTSTTHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAMCLKGIMGVKDFEENMNRSETEACFFICGENLSIKGLTYLTNSLFDYRSPENNGTRAEFILDAASHKETYTEIAGMQRFGAFYMDYLYTMENTNGKGSANQQDFSSGRSEDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCSLEHEYEPYSRLKPDTKDESETVLNPEEVASLEEYIPTRHTSVTLLKCTFTIFMAEFNLLDHLLPVIMGEKNSSNFMNTTNFQSLRPLPSIQILVDKINLEHSVPMYAEQLVHVVSGLTQPSDNLLHYCYAHCYLKIFGFQAGLTSLDCKGSYCLPVPIIPSFSTALYGKLLKLPTCWAKRSQIAITEGIFELPNLTIQATRAQTLLLQAIYQSWSHTGNVSSLAVNEALMNEVFQSIGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTMGSIKICAKAPGDNGKEKLIPLLQGPSDTKDLHSSKWLNESRKPESLLAPDLIAFTVQVPQYMDYCHSSGAVLLCSIQGLAVNIDPILYTWLIYQPQRRTSKHMQQQPVIPVPLVVPISRRKEDEVSVGSAPLAKQQSYQASEYASSPIKTKTVTESRPLSVPMKAMLNISEGCRSPEERMKEFIGVVWNAVKSLTLQLEVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSMPGMLVLCLPQIKIVSAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLFGKQVTLCLVEPMGCTSTLAVTSQKLLTAGPDTRHSFVVCLHVDLESLEIKCSNPQVQLLYELTDIMNKVWCKIQRRGNLSPSSAHPESLAGPVPSSPVRSSIGTAPPDTSTCSPSADIGTTTEGDSVQALDDSPFSDSVTLEQTTSNIGGSSGRISLWMQWVLPKITIKLFAPDPENKGTELCMVSELEDLSASIDVQDVYTKVKCKIESFNIDHYRSRPGEGWQSGHFEGVFLQCKEKPVTTAKLLDGSHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFHKLSEGLTDGSPHFLHEILLSAQAFDIVLCFPLLNAIASIFQAKLPKTQKEKRKSPGQPMRTHTLTSRNLPLIYINTSVIRIFVPKTEEVQPSIEVNQAAKEDTMVLKIGSVAMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWDQLKPEKESGTGGVLTENERNSQNPALEWNMASSIRRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENMHTEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLAPSSKATEISKQEQKKMDAYDGSMAETSSRYSGAQDSGIGSDSVKIRIVQIEQHSGTSQHRIARPSRQSSIVKNLNFIPFDIFITASRISLMTYSCTALPKSKSQEQKDNEKTGKSSLNLPEVDSDITKPSQACISMVTADDLLSSNVSFPSGKKIGVISLESLHASTRSSARQALGVTIVRQPGRRGTGDLQLEPFLYFIVSQPSLLLSCHHRKQRVEVSIFDAVLKGVASDYKCTDPGKTLPEALDYCTVWLQTVPGEIDSKSGIPPSLVTLQIKDFLNGPADIHLDISKPLKANVSFTKLDQINNFLKKIQSAHCRETSALSDTMPNKDELPASRCYRGKLSKLKVHGDGTQKIPFTENVWKTVSCFQKISVHTTQLVVSMETVPHPNKPCLLASLSTFSGSLNVKATQKVPGVILGSSFVLSVNDFLLKTSLKERSRVLIGPCCATANLEAKWCKHSGNPGPEQSIPKISIDLRGGLLQVFWGQEHLNCLVLLHELLNGYLNEEGAFDVQASEAVPQMPSPKEKNQMFKGEQSSDDLRTGLFQYIRDAEPLKMPGVYEVLFYNETEDSPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDMLQIPCSLEYWDELQKVFVAFREFSLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSACDQLVTPTALAACTRVDSCFTPWFVPSLCISFQFSHLEFHLCHHLDQLGTAPPQYLQPFVSDKNVPTELEYMIISFREPHIYLRQWNNSSVCQEIQFSAHADCKLLECRNVTMQSLVKPFSIFGQVAVSSSAAEKLIDCAIVIDSVFVNFGQHVVHSLNTAVQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYKGRTASLIIKVQQLSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENSELTELCVRAKGDEDWSRDVCLESKAPEYSVVIQVPSSNSSIIYVWCTVLTLEPSSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQVIPGKGQEKPLQNIEPDLVHHLTFQAREEDDPSHCAVPISTSLIKQIATKIHPGGTVNQILDEFYGPEKSLQPTWPYNKKDSDRNEQLSQWDSPMRVKLSAWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIILQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNLTSPKWKDGGNGEVVSLDEEGFVDAEITLGAFPGHQKLCQFCISSMVQQGIQVIQIEDKTTIINNTPYQIFYKPQLSVSTPQSGKEYFHIPDGATFSLHPGGEQPAVTFSSLPCWDLRPDISQSALDASLLQKQILLAFAPAAAANSSQYWSLPAVVRQEFPRQSVAVPLGSCGENGFCTRAIALTYQEHFGVTYLTLSEDPSPRIIFHNRCPVTILIKENIKDIPKFEVYCRKIPPECSVHHELYHQMSSYPDCKTRDLLPSLLLRVELLEEMTTEWSDAIDINNQGTQVVFLTGFGCVYVDTVHQGGTIFITVAPEGKAGPILTNTHRTPEKIMALRMVITQLSVAVLDDLTHHRVSSELLRLTLDNVFLRLAPVAGHLPGEEAAAAPVHLYCVEVCCGDLQLDNQLYNKSNFHFAVLVCQGEKTEPSPCAKMQSLLVSSHDLEEYRKKCFIKFCLTLAEGKSCSFDINEFSFELKPARLYVEDTFVYYVKTLFETYLPSGGPATHAPLLAGGTQGLPLQVRQHARALVHPVRLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGIADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAHASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRYQPGDLHADQAPNSHAKYVWKMLQSLGRPEVHMTLDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEIDCAQDSKQSNLLIVQLKQPRVACDVEVDGTRERLSEQQYNRLVDYITKTSCHLAPSCSFVQTPCPVVAVEPLPSTVKTYHYMVDPPFAQVFISKFTMVKNKALRKGFP", "length": 3993, "header": "tr|F1S0N9-1|F1S0N9_PIG Isoform 1 of Vacuolar protein sorting 13 homolog B OS=Sus scrofa OX=9823 GN=VPS13B PE=3 SV=4 CANONICAL=F1S0N9-1" }, "locus": { "chromosome": "4", "start_pos": 37819685, "end_pos": 37091457, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006662.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006662.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006483.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006483.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQY2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152362", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152362", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5Y7Q0-1", "protein_name": "Vacuolar protein sorting 13 homolog B", "gene_name": "Vps13b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAENTKSSTKLRRIQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKAINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEDPACLSKDPLGNLTGTEDETRLDMQYPAPYKGQELYPQDYEEPQGWVSWAWSFVPAIVSYDDGEEDYPGTDPASTMHQQKAHTLKDPIVSVGFYCTKATVTFKLTEMQAENSYYSPQKVKSKEVLCWEQEGTTIEALMMGEAFFDCQIGFVGCRAMCLKGIMGVKDFEEHMDRSETEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFTLDAAHHKEIHTEIAGMQRFGAFYMDYLYTMEHSSGKGPSSQQDFPSGKNEDFGIVQEKSTKSLVIGPLDCRLDSSAVHRVLKMIVCAMEHEYEPYSRLKPESKDEKEVVLNPEEVASLEEYIPTRHTSVTLLKCTCTIFMAEFNLLDRLLPVIMGGKNASHFTNATNFQSLRPLPSIQILVDKINLEHSVPMYAEQLVHVVSSLTQPSDNLLHYCYVHCYLKVFGFQAGLTCLEQSGSHCLPAPIVPSFSTALYGKRLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTLLLQAVYQSWFHSGNASSSTVNEALMNEVFQTTGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTLGSIKICAKAPGDSGKEKLIPLLQGPSDTRDLHSTKWLNESRKPESLLAPDLIAFTIQVPQYMDYCHHSGAVFLCSVQGLAVNLDPILYTWVIYQPHKRTSRHIQQISFPFCFFQQPVVAVPLVTSVNRRREDELSVGSAPLGKQQSYQASEYASSPIKTKTVTESRPLSVPVKAVMHIHEECRSPEDKMKEFIAILWNAVKSLTLQLDVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSIPGTLVLCLPQIKIVSAGHKSMEPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQQLLPVGPEGRHSFVVCLHVDLESLEIKCSNPQVQLIYELADIMSKVWNKIQKRGHLSPSSVYSDTMAGPVPGSPVRSSVGTAPPDTSTCSPSADIGTTTEGDSIQAADDSPFSDSVTLEQTTSHIGGSSGRVSLWMQWVLPKVTVKLFAPDLEKKDTEVCMVSELEDLSASIDVQDVYTKVKCKIESFSIDHYQSRPGEGWQSGQFEGVFLQCKEKPVTTTKLLDGAHQQHGFLSLTYTKAVTKNVRHKLTSRSERRSFHKLSEGLMDGSPHFLHEILLSAQAFDIVLCFPLLNAIASIFYTKLPKTQREKRKSSGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETQSSVTVNQAAKEDTMVLKVGSVSMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSISIGTAQWDQLKPEKGSGTGGVPTESERNSQNPALEWNMASSIQRHQERRAILTPILTDFSVRITGAPAIIFTKIISPENLHMEEVLVCGHSLEVNITTSLDFFLSVAQVQLLHQLVAANMTGSEPSAKATEISKHEQKKADTFDAGTAETSSGCSGAQDSGIGSDSVRIRIVQIEQHSGASQHRIARPSHQSSIVKNLNFIPFDIFITASRISLMTYSSVALPKCKLPEQKEGGKTGKSSLNLPEVDSDAAKPNQAYISMATAEDPLSTSTSFSSGKKIRVLSLESLHASTRPSARQALGVTVVRQPGRRGTGDLELDLFLHLIVSQPSLLLSCHHRKQRMEISIFDATLKGVASDYKCADPGKTLPEASDYNIVWLQTVPGETDSKSGIPPSLITLHIKDFLNGPADISLDVSKPLKANLSFTKLDQINHFLKKIKKAHSSAHSTETSASSDSMLNRDEPPVSKCYHGKLSKPKVYCDEAQKTSFQENMWRVISCFQKVSVHTTQIVVSMETVPHPHKPCVLASLSNLNGSLSVKAAQKVFGASLGSSFLLNISDALLKTSLKERSRILIGPFSAAVNLEAKWCKHSGNPGPQQSIPKISMDLRGGLLQVFWGQEHLNCLALLHELFDGYLKEEGKSEMPVPESAPQTPSPMEKAQAFKTEQSSDDLRTGIFQYIQDAEPLKLPGMNEVLFYNETEESPGMMLWRYPEPRVLTLIRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFQEFSLSESKVCELQLPDINLVHDQKKLVSSDLWRIVLNNNQNTTDDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLCVSFQLAHLEFRLCHHLDQLGTASPQHLQPFVSDKNVPSELEYMIISFREPNLYLQQWNSAPVCREIRFSSQVDCKLLECRNVTMQSVVKPFGICGQMALSSSGGQKLLDCTVILDSVLVNFGQHVVHSLSTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFVVDHTGTFIRTIQYKGRTASLIIKVRPLSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENSELTELCVKAKGDEDWSRDVCLEPKAPEYSTVIQVPTSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIVRSHLPDPIITHLEKRSLGLRETQIIPGRGQENPLHSVEPDLVHHLTFQAREEYDPSDCAVPISTALIKQITTKIQPGSTVNEMLDEFYGSEKSHEPTWPYSQKDSDRNEQLSQWDSPMRVRLSMWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSLAIKLVHNLTSPKWKDGGNGEVVTLDEEAFVDAEIRLGAFPGHQKLCQFCISSMVQHGIQVIQIEDKTTVINNTPYEIFYKPHLSVSNPYSGKEHLHVPDSATFSICPGGEHPDVKSSSLPCWDIMPDVGPSVLDTTILQKQILLGFSPVPGADSSQCWSLPAIIRREFPRQSVAVPFGTLREDGFCTRAIALTYQEHFGVTYLTLSEDPSPRVVFHNRCPVTILVKENIRDSPKFEVYCKKIPPESSIHHELYHQIISYPDCKTKDLLPSLFLRVDTMEEMPAEWSDPVDINSQGTQVVFLTGFGYVYVDIAQQCGTVFIILAPEGKAGPIFTSASRALERMVTFRMFITQLSLAVSDDLTHQAPSELLRLTLDNVFLHVSPCVPGVLPGEEPPSSFFQLYGVEVYCGDLQLDNQLYSKSSFHFAVLVCRGEKTEPAQYSKVHSLLVSSKDLEDYKENCFIKLCLTVSEGKDFLLDVSEFTFELKPARLYVEDTFVYYIKTLFDTYLPHSRLAGHHAQLRTGKQLLPMQVTQHAKALVNPVKLRKLVIQPVSLLVSIHASLKLYIASDHTPLSFSVFERGPLFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVRHISKGTLTSITNLATSLARNMDRLSLDEEHYTRQEEWRRQLPESLSEGLRQGLSRLGISLLGAVAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSISEDTQQQAFPITEIDCAQDTKQKNLLTVQLKQPRVACDVEIDGARERLSEQQFNRLVDYIAKTSCHLAPSCSSMQTCAVVALEPPPATVKTYRYLADPHFAQVFISKLTMVRNKALRKGFL", "length": 4004 }, "evidence": [ { "id": "F1S0N9", "url": "https://omabrowser.org/oma/group/F1S0N9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YH92-1", "protein_name": "Vacuolar protein sorting 13 homolog B", "gene_name": "VPS13B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGAQQEDHESCGSSSTNRSTTESMKSAVKPRRVQQSASPDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVDEFWDRAFMDISATDLVLRKMINFSDCTVCLDKRNASGKIEFYQEPLLYKCSFKTRLHFTYDNLNSKMPSIIKIHTFVESLKLSISDQQLPMFIRIMQLGIALYYGEIGNFKDGESEDSICHTKDMLGNITGAEDETGSVMQYPTQYVTQDPYLHQDDDQQQGWVSWAWSFVPAIVSYDDEENESSGTDDGTTLRQQKSQSLKDPIISIGFYCSKATVTFKLTEMQAESSYYSPQKVKSKEVLCWEQEGTTIEVLMKGELFFDCQVGFVGCQAMCLKGIMGIKDFEENVNRNDEEAYFFSCGENTSAKGKTYLTNSLFDYRSPENNSIRAEFILDAAHHKETYTEIAGMQRFGAFYMDYLYTMESTSGKVSGNQQDPSSVKNEEFGNVQEMSTKSIIVGPLNLRLDSSAVHRIMKMIVCALEHEYEPYCRTKPDLVDGNRTIPSSEEVASLEEYIPTRLTTFTILKCTIIIPVAEFNLLDHLMPVIMGEKNFSGLLNATSFQPLRPLPSVRILVDKINLEHSVPMYAEQLVNTVSSLSQPSDNLLHYSYSHCYLKVFGFQAALTSLDSRGLYSFPVPVIPSFSTALYGKLIKFPKYWTKRAHVPLTECIFELPNLTVQATRAQTLLLQTIYQSWCHPVGNVSSVVVNEALLNEVFQSSGVKSKNPLPTLEGSVQNVELKYCSTSLVKCASGTMGSIKICAKAPGDGGKEKLIPIIQGPSDTRDLHSSKWLNESRKPESLLAPDLVAFTIQIPQYMDYCHNSGAVLLSSIQGLAINVDPVLYTWLIYQPQKRASRHIQQQSVGAVPLGVSVARKKEDEASVGSAPLARQQSNQASEYASSPVKTKTITESRPLSLPVKTMLNSSEGCRSPEERMKEFIGIVWNAVKRLTLQLEVQSCCVFLPNDSLPSPSTIVSGDIPGTVRSWYHGQASMPGTLVVCLPQIKIMSAGHKHMEPLQEIPFVVLRPILEEGDAFPWTISLHHFSMYTLLGQQMTLNLVEPMGCTSTLAVTSQKLLASGPESRHSFVVCLHVDLESLEIKCSNPQVQLLYELAEITSKVWNKIQRRGILYQSSVYTETMTGPAPPSSPVKSSVGTVPPDTSTYSPSADVGTTTEGDSLQGGDDSPFSDSITLEQTTSNIGVSSGRVSLWMQWMLPKITIKLFAPDPRNNGTEVCVVSELEDLSASVDMQDVYTKIKCKIESFNVDHYRNSLGEDSWSLGQYGGVFLSCTDKLNRRTLLVRPISKQDPFSNFSGFFPSATAKLLDGSHQQHGFLSLTYTKAVTKNVRHKLISRNERRTFHKLSEGHTDGSPHFLHEILLSAQAFDVVLCFPLLNAIASIFQARLPRSQKEKRKTPGQPMRTHTLTSRNLPLIYINTGVIRVFFPKNEEDHHNVEANPAIKEDTLVLKIGSVSMAPQADNPLSRAVLRKDIYQRALNLGILRDPGSEVEDRQYQIDLQSINIGTAHWNQLKPEKENGKGGILPESERNSQNPALEWNMASSIRRHQERRAILTPILTDFTVRVTAAPAIIFTKIDAPENLHPEEILVCGHSLEVNVTTNLDFFLNVAQVQLLQQLVEANMIGLEPSSTINEVSKQEQKKMDVSDGGMVETSSRYSGAQDSGIGSDSVKIRIVQIEQHSGTSQHRIAQPSRQSSIVKNLNFIPFDIFVTASRISLMTYSCTALPKLKSPQDQKDGEKISKSSLNLPEAGSGSSHDTKRPSQPSISSVTADDLLNSNVPLSSGRKTGLLSLETLHASTRSSARQALGITIVRQPGRRGTGDIELQPFLYLVVSQPSVLLSCHHRKQKIEVSVFDAGLKGVASDYKCTDPGKTLPEALDYCKIWLQTVAGEVDAKSGIPPSLITVQIKDFLNGPADVNIDVSKPLKANLSFVKLDQLKEFLKKIMTTNDNKPGKETAPSTGTHPDEAVASGAKHSSTKGSPPAVHTSAAQKVSVQENLWQALSCFQKISIHTVQMVVSMETVPHPSKPCLLASLSNLSGSLNIKGGLKTAGIHGSCLVLDIKDFLLKTCLKERTRSLIGPFCCSVTVEAKWCKHSGDPGPEQSIPKMYIDLKGGLLQVFWGQEHLNCLVLLQELVWEYLTKTGSAETFVSERRYRASSSTERNQASKTEHSSDDLRTGLFQYIQDAEAQKLPGAYEVVFYNETEDSPGMMLWRYPEPRVLTLVRINPVPFNTTEDPDISTADLGDVLQIPCSLEYWDELQKSFVAFREFSLSESKVCELQLPNVSLVNDQKELIASDLWRIVLNSNQNVVDDQSSESESGSQSACDQLVTPTALAACTRVDSCFTPWFVPSVSVLVQFSFLEVHLCHHLDQLGTAPPKFLQPFLSDKNMPSELEYMIISFDEPHVYLRQWSDESVFQELQFSTQADCKLLECRNVTMQSVVKPFKIWGQIAISGGTGRRLLDCTIMVDPILILFGQYAIHSLNTAIQAWQQNQCPEAEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDNAGTFIRTIQYKGRTASLIIKVQQLSGVQKQILICGRQTVCSYLSESIELKVVQHYISQDGQAVVKEHINCLAAKQKLPSYVLEDDELTELSVKATGDEDWSQDVCLSSEHTEHSTVIQVPSSKSLITYVWCTILTLEPSSHVQQRIIVFSPLFIVRSHLPDPIIIHLEKRSLGLNETQVVPGKGQEKALQNIEPDLTHHLTFQAREEDDPSECAVPISTTLIKQIATKSHPGGNVSQILSEFYGTANPRQPAWPYNKKDSDSSEQLSQWDSPMRVKLSVWKPCVKTLLIELLPWALLINQSKWDLWLFEGEKIVLQVPTGKVMIPPNFEEAFQVGIYWANTNTVHKSVAIKLVHDVTSPKWKDAENGEVVTLDEEGFVEAEIKLGAFPGHQKLCQFCISSMVRQGIQILQIEDKTTIINDTSYQIYYRPQLCISKPYSGEEDFYSADSTVFSVGPARTKNTETLTSVPCWDLLADSSPITSGTPPTQKRMLLSFSPGGSSEFWSLPAVIKQEFPRQSVAVPIGACTESGFYTRAITLTYQEHLGVTYLTLTEDPSPRIIIHNRCSISLLVKENFKDTPKFEVYCRKIPAECSIHHELYHQISSYPDCKTRDLLPSILLKVMSSDDLVNEWSDIVDINNQGTQVVFLTGFGYVYVDIVHQCGTIIITLAPEGRAGPVEINLNRSQEQSLFLKVFISQLSLAVFDDITNHKVSSELLRLTADNVFLHMAPTTSYLRPLSRELQQDTGEGLPPFYSLQVYCEDLQLDNQLYSKSNFHFAVLLCQGEKNETMQWSRANNLIVSNKDLENYKENCFIKLCIAFSEEENFTFHVNDLSFELKPARLYVEDTFVYYIKTLFDTYLPENKGAWQSVNSSDTTQILPKQVREHARALVKPVKLRKLTIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGIADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPENLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQRVSEGQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRSHPNDQQVEQAPNSHVKYVWKMLQSLGKPEVHMALDVMIVSGSGQQHDGCLLLTSEVLFVVSISEDTQQQAFPVTEIDCLEDDQQKDLLKVQLKQQRVPCDLEADGVRERLSEQQYNRLVEYVTKTSYHLAPSTTTVPAPQAVAAEHLPTVTKTYNYVVDPNFAQVFISKFIMVKNKALRKGFY", "length": 4031 }, "evidence": [ { "id": "F1S0N9", "url": "https://omabrowser.org/oma/group/F1S0N9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q7Z7G8-1", "protein_name": "Intermembrane lipid transfer protein VPS13B", "gene_name": "VPS13B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAESTKSSIKPRRMQQAAPTDPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKVINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYENLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKEGEIEDLTCHNKDMLGNITGSEDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWAWSFVPAIVSYDDGEEDFVGNDPASTMHQQKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFDCQIGFVGCRAMCLKGIMGVKDFEENMNRSETEACFFICGDNLSTKGFTYLTNSLFDYRSPENNGTRAEFILDSTHHKETYTEIAGMQRFGAFYMDYLYTMENTSGKGSTNQQDFSSGKSEDLGTVQEKSTKSLVIGPLDFRLDSSAVHRILKMIVCALEHEYEPYSRLKSDIKDENETILNPEEVALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDHLLPVIMGEKNSSNFMNTTNFQSLRPLPSIRILVDKINLEHSVPMYAEQLVHVVSSLTQPSDNLLHYCYVHCYLKIFGFQAGLTSLDCSGSYCLPVPVIPSFSTALYGKLLKLPTCWTKRSQIAITEGIFELPNLTIQATRAQTLLLQAIYQSWSHLGNVSSSAVIEALINEIFLSIGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTMGSIKICAKAPVDSGKEKLIPLLQGPSDTKDLHSTKWLNESRKPESLLAPDLMAFTIQVPQYIDYCHNSGAVLLCSIQGLAVNIDPILYTWLIYQPQKRTSRHMQQQPVVAVPLVMPVCRRKEDEVSIGSAPLAKQQSYQASEYASSPVKTKTVTESRPLSVPVKAMLNISESCRSPEERMKEFIGIVWNAVKHLTLQLEVQSCCVFIPNDSLPSPSTIVSGDIPGTVRSWYHGQTSMPGTLVLCLPQIKIISAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHNFSIYTLLGKQVTLCLVEPMGCTSTLAVTSQKLLATGPDTRHSFVVCLHVDLESLEIKCSNPQVQLFYELTDIMNKVWNKIQKRGNLNLSPTSPETMAGPVPTSPVRSSIGTAPPDTSTCSPSADIGTTTEGDSIQAGEESPFSDSVTLEQTTSNIGGTSGRVSLWMQWVLPKITIKLFAPDPENKGTEVCMVSELEDLSASIDVQDVYTKVKCKIESFNIDHYRSSLGEECWSLGQCGGVFLSCTDKLNRRTLLVRPISKQDPFSNCSGFFPSTTTKLLDGTHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFHKLSEGLMDGSPHFLHEILLSAQAFDIVLYFPLLNAIASIFQAKLPKTQKEKRKSPGQPMRTHTLTSRNLPLIYVNTSVIRIFIPKTEEMQPTVEANQAAKEDTVVLKIGSVAMAPQADNPLGRSVLRKDIYQRALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWHQLKPEKESVSGGVVTETERNSQNPALEWNMASSIRRHQERRAILTPVLTDFSVRITGAPAVIFTKVVSPENLHTEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLEPSNKAAEISKQEQKKVDIFDGGMAETSSRYSGAQDSGIGSDSVKIRIVQIEQHSGASQHRIARPSRQSSIVKNLNFIPFDIFITASRISLMTYSCMALSKSKSQEQKNNEKTDKSSLNLPEVDSDVAKPNQACISTVTAEDLLRSSISFPSGKKIGVLSLESLHASTRSSARQALGITIVRQPGRRGTGDLQLEPFLYFIVSQPSLLLSCHHRKQRVEVSIFDAVLKGVASDYKCIDPGKTLPEALDYCTVWLQTVPGEIDSKSGIPPSFITLQIKDFLNGPADVNLDISKPLKANLSFTKLDQINLFLKKIKNAHSLAHSEETSAMSNTMVNKDDLPVSKYYRGKLSKPKIHGDGVQKISAQENMWRAVSCFQKISVQTTQIVISMETVPHTSKPCLLASLSNLNGSLSVKATQKVPGIILGSSFLLSINDFLLKTSLKERSRILIGPCCATANLEAKWCKHSGNPGPEQSIPKISIDLRGGLLQVFWGQEHLNCLVLLHELLNGYLNEEGNFEVQVSEPVPQMSSPVEKNQTFKSEQSSDDLRTGLFQYVQDAESLKLPGVYEVLFYNETEDCPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDVLQVPCSLEYWDELQKVFVAFREFNLSESKVCELQLPDINLVNDQKKLVSSDLWRIVLNSSQNGADDQSSASESGSQSTCDPLVTPTALAACTRVDSCFTPWFVPSLCVSFQFAHLEFHLCHHLDQLGTAAPQYLQPFVSDRNMPSELEYMIVSFREPHMYLRQWNNGSVCQEIQFLAQADCKLLECRNVTMQSVVKPFSIFGQMAVSSDVVEKLLDCTVIVDSVFVNLGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFSVDHAGTFIRTIQYRGRTASLIIKVQQLNGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLESKAPEYSIVIQVPSSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGKGQEKPLQNIEPDLVHHLTFQAREEYDPSDCAVPISTSLIKQIATKVHPGGTVNQILDEFYGPEKSLQPIWPYNKKDSDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINESKWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWANTNTVHKSVAIKLVHNLTSPKWKDGGNGEVVTLDEEAFVDTEIRLGAFPGHQKLCQFCISSMVQQGIQIIQIEDKTTIINNTPYQIFYKPQLSVCNPHSGKEYFRVPDSATFSICPGGEQPAMKSSSLPCWDLMPDISQSVLDASLLQKQIMLGFSPAPGADSSQCWSLPAIVRPEFPRQSVAVPLGNFRENGFCTRAIVLTYQEHLGVTYLTLSEDPSPRVIIHNRCPVKMLIKENIKDIPKFEVYCKKIPSECSIHHELYHQISSYPDCKTKDLLPSLLLRVEPLDEVTTEWSDAIDINSQGTQVVFLTGFGYVYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIVTFKMFITQLSLAVFDDLTHHKASAELLRLTLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLYIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLHADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDTQQQAFPVTEIDCAQDSKQNNLLTVQLKQPRVACDVEVDGVRERLSEQQYNRLVDYITKTSCHLAPSCSSMQIPCPVVAAEPPPSTVKTYHYLVDPHFAQVFLSKFTMVKNKALRKGFP", "length": 4022 }, "evidence": [ { "id": "F1S0N9", "url": "https://omabrowser.org/oma/group/F1S0N9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80TY5-1", "protein_name": "Intermembrane lipid transfer protein VPS13B", "gene_name": "Vps13b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLESYVTPILMSYVNRYIKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQDDHESCGSNSTNRSTAENTKSSIKPRRIQQAAPADPDLPPGYVQSLIRRVVNNVNIVINNLILKYVEDDIVLSVNITSAECYTVGELWDRAFMDISATDLVLRKAINFSDCTVCLDKRNASGKIEFYQDPLLYKCSFRTRLHFTYDNLNSKMPSVIKIHTLVESLKLSITDQQLPMFIRIMQLGIALYYGEIGNFKDGETEDPPCLSKDTLANLTGTEEESRIDMQYPAPYKGQELYSQDYEEPQGWVSWAWSFVPAIVSYDDGEEDDLGTDPASIMHQQKAQTLKDPIVSVGFYCTKATVTFKLTEMQAENSYYSPQKVKSKEVLCWEQEGTTIEALMMGEPFFDCQIGFVGCRAMCLKGILGVKDFEEHMNRSETEACFFICGENLSTKGLTYLTNSLFDYRSPENNGTRAEFILDAAHHKETHTDIAGIQRFGAFYMDYLYTVEHSSGKGPTSQQDFPSGKNEDLGIVQEKSTKSLVIGPLDCRLDSSAVHRVLKMIVCALEHEYEPYSRLKPESKDEKETVLDPEEVSSLEEYIPTRHTSVTLLKCTCTVFMAEFNLLDCLLPVIMGGKNSSNVTNATNFQSLRPLPSIQILVDKINLEHSVPMYAEQLVHVVSSLNQPSDNLLHYCYVHCYLKVFGFQAGLTCLDHSGSYCLPAPIIPSFSTALYGKLLKLPALWTKRSQTVVTEGIFELPNLTIQATRAQTLLLQAIYQSWSHIGNVSSSTVNEALMNEVFPMTGVKSKNPLPTLEGSIQNVELKYCSTSLVKCASGTLGSIKICAKAPGDSGKEKLIPLLQGPSDTRDLHSSKWLNESRKPESLLAPDLIAFTIQVPQYMDYCHHSGAVFLCSVQGLAVNIDPILYTWVIYQPQKRANRHAQQQPVVAVPLVTSVNRRKEDELSIGSAPLGKQQSYQASEYASSPIKTKTVTESRPVSVPVKAVLRVHEECRSPEDKMKEFIAILWNAVKSLTLQLDVQSCCVFIPNDNLPSPSTIVSGDIPGTVRSWYHGQTSIPGTLVLCLPQIKIISAGHKYMEPLQEIPFVIPRPILEEGDAFPWTISLHHFSIYTLLGKQVTLSLVEPMGCTSTLAVTSQKLLPVGPDGRHSFVVCLHVDLESLEIKCSNPQVQLIYELADTMSKVWSKIQKRGNLSPSSVYPETVAGPIPGSPVWSSVGTAPPDTSTCSPSADIGTTTEGDSVQAGDDSPFSDSVTLEQTTSNIGGSSGRVSLWMQWVLPKATVKLFAPDLEKKGTEVCMVSELEDLSASIDVQDVYTKVKCKVESFSIDHYQSRPGEGWQSGHFEGVFLQCKEKPVTTTKLLDGAHQQHGFLSLTYTKAVTKNVRHKLTSRNERRSFYKLSEGLMDGSPHFLHEILLSAQAFDIVVCFPLLNAIASVFHTKLPKTQREKRKSSGQPMRTHTLTSRNLPLIYINTSVIRIFVPQTEETQSTVAVNQAAKEDTMVLKVGSIAMAPQADNPLGRSVLRKDIYQKALNLGILRDPGSEIEDRQYQIDLQSINIGTAQWDQLKPEKGSGSGGVPTESERNSQNPALEWNMASSIQRHQERRAILTPILTDFSVRITGAPAIIFTKIISQENLHMEEILVCGHSLEVNITTNLDFFLSVAQVQLLHQLIVANMTGLEPSTKATEISKQEQKKVDTFDGGTAETSSRYSGAQDSGIGSDSVKIRIVQIEQYSGASQHRIARPSHQSSIVKNLNFIPFDIFITASRISLMTYSSVALPKFKLPEQKEDGKTGRTFLNLAEVDSDVAKPNQACVSMVTAEDPLSSSTSFSSGKKVRVLSLESLHASTRSSARQALGVTVVRQPGRRGTGDLELDLFLHLIVSQPSLLLSCHHRKQRVEVSIFDAMLKGVPSDYTCTDPGKTLPEASDYNIVWLQTVPGETDSKSGIPPSLVTLHIKDFLNGPADIYLDVSKPLKANLSFTKLDQINHFLKKIKKAHSSAHSKETSTPSDSILNMDEPPVPKCYRGKLSKTKVHCDEAQKTSFQENIWRAISCFQKVSVHTTQIVVSMETVPHPHKPCVLASLSNLNGSLTVKAAQKVPGASLGSSFLLSIHDVLLKTSLKERSRILIGPFSATVNLEAKWCKHSGNPGPQQSIPKISMDLRGGLLQVFWGQEHLNCLALLHELFNGYLQEGKSEMPVPESAPQMPSPVEKTQAFKTEQSSDDLRTGIFQYVQDAESLKLPGVYEVLFYNETEESPGMMLWRYPEPRVLTLVRITPVPFNTTEDPDISTADLGDVLQVPCGLEYWDELQKVFVAFQEFSLSESKVCELQLPDINLVHDQKKLVSSDLWRIVLNNNQNTTDDQSSASESGSQSTCEPLVTPTALAACTRVDSCFTPWFVPSLCMSFQFAHLEFRLCHHLDQLGTASPQYLQPFISDKNVPSELEYMIISFREPNLHLRQWNSGPVCQEIKFSSQMDCKLLECRNVTMQTVVKPFGICGQMALSSDGVQKLLDSTVIVDSVLVNFGQHVVHSLNTAIQAWQQNKCPEVEELVFSHFVICNDTQETLRFGQVDTDENILLASLHSHQYSWRSHKSPQLLHICIEGWGNWRWSEPFTVDHAGTFIRTIQYKGRTASLIIKVRALSGVQKQIIICGRQIICSYLSQSIELKVVQHYIGQDGQAVVREHFDCLTAKQKLPSYILENNELTELCVKAKGDEDWSRDVCLEPKASEYSTVIQVPTSNSSIIYVWCTVLTLEPNSQVQQRMIVFSPLFIMRSHLPDPIIIHLEKRSLGLSETQIIPGRGQENPLQNVEPDLVHHLTFQAREEYDPSDCAVPISTALIKQIATKIQPGGTVNEMLDEFYGPEKSQEPTWPYSNKDSDRNEQLSQWDSPMRVKLSIWKPYVRTLLIELLPWALLINQSKWDLWLFEGEKIVLQVPAGKIIIPPNFQEAFQIGIYWENTNTVHKTLAIKLVHNLTSPKWKDGGNGEVVTLDEEAFVDAEIRLGAFPGHQKLCQFCISSMVQHGIQVIQIEDKTTVINNTPYQIVYKPHLAISNSYSGKEHCHVPDSATFSICPGGEHPAVRSSSLPCWDVTPAVGSSELDTATLQKQILLGFSPVPGADSAQCWSLPAIIGGEFPRQSVAVPFGTGRENGFCTRAIALTYQEHLGVTYITLSEDPSPRVVFHNRCPVPMLMKENIRDIPKFDVYCKKIPPESSVHHELYHQIISYPDCKTKDLLPSLFLRIDSMEEMTAEWSDPVDINSQGTQVVFLTGFGYVYVDIAQQCGTVFIILAPEGKAGPIFTSTSRALERMVTFRMFITQLSLAVSDDLTHQAPSELLRLTLDNVFLHVSPVPALLPGEEPPSSFFQLYGVEVYCGDLQLDNQLYNKSNFHFAVLVCQGERTDPAQYSRVQSLLVSSKALEEYKENCFIKLCLTVSEGKDILLDVSEFTFELKPARLYVEDTFVYYIKTLFDTYLPPSRMSGHHAQLFTGQQVLPVQVTQHAKALVNAVKLRKLLIQPVNLLISIHASLKLYIASDHTPLSFSVFERGPVFTTARQLVHALAMHYAAGALFRAGWVVGSLEILGSPASLVRSIGNGISDFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGALTSITNLATSLARNMGRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSETQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRCQPTHLYADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSISEDTQQQAFPITEISCAQDTKQNNLLTVQLKQPRVASDVEIDGARERLSEQQFKRLVDYIAKTSCHLAPSCSSMQTCSVVAVEPPPATVKTYHYLVDPHFAQVFISKFTMVKNKALRKGFS", "length": 3993 }, "evidence": [ { "id": "F1S0N9", "url": "https://omabrowser.org/oma/group/F1S0N9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VAD3-1", "protein_name": "Vacuolar protein sorting 13B, isoform A", "gene_name": "Vps13B", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFKLESYITPILLSYVAKYVKNFRDEDAQVSLWEGEVTFQNLDLRLEVLEEELNLPVELVSGHIHELSILVPWTKLMSEPVKIVINTIEFVAKLPDSESKQRRASFQREQRRKSKRESVEQPDQTKSPGPASSSSVVNKIINNINLQCHNIILKYVEDDIVVSMNVQTLNFSSAGEDWKPTMVDIHPVSVVMRKLLQVSDLTICLDKRNTAGRIEVCQEPVLYRCTLECRVLRKYNANTVSTTSTTRIGVFTKSLDINVSSLQFPMVMRLVKMLLELKPAEFEDDPQNPEDQEAVAEGSESQQGTESAGRSVFWWAWSLLPSFDTEAPSSSCDTPTGHAFDLGVYAEELNFQLKNSEYFTDQSMGGIKRIRYTPILRISLGGLYYERTILKECDWANVKAGLSSMCMEPLGAYRSDDLVDRNLVNTQEFQQERSFIDKSLFDENYMFAERSWCSYNYADYVARNTDEYMLFRSPVLAFDVIEHRVPKPSSHPVAESQLRDLGVRIQYRLLSAGITFHFSQSFVQVKKVISDLIRPYDYPGYRSESMKDEDRGVPEPENKNSEMTIPDLEYLMGLVPTCNYKIELRNIVVQLYPRQQQDESSAINQHQLTTTVRQSLLPYLQLKISLVEGTMCGPVNPVRLVQLITHLEEKPRDVVNACYNCFHFNVKNLALMIMNTTPDNGRAKLLNIPRVQVNWNRLLAPHLWRQNEAPLETSEIKSEIITLEFSKRELIIAKRLVPLISSFSGQDLCDLAHIVANVNVNSDVIKLQSVGTKLNLVYHKYHTHLAAVGSLQGVHTDAVHTKMNIRNVVLSTSKNADNKWLEMQCQFPLEEVHSEQEKIPGTVVCLWLEPFRITTDIYLLQFLNFSDNSGRQITKDKEVETDLESVNQSEPPITQSVSNYSTISASAIAFNDFQPRRISRNNSRKISVPEETVHLSSERDERHTQAEPLTIPVANKPQPSNFDTTDFVKRLTKMVVLVEIAQAKIDVCEVMMRKTPGHTDVEYTSIRLPHMKVKSGNCEAIQRGNIRGVIPVASNTELLNWVFDLNEFNVCYRRANVTEMIIAPVRTTITLALSFKTSDKVDGSKGKEDKCANTCSINVHVDMSAINIFAQRVKLLHEHCLIISKMYGSLCPDEPASKWQTGKMKPRLEVYTGSAQNYPVIKEFLELDPNFEAPKVKSAPKSSVILFCQWTIPRISFEMENSNDFKHSKIVMSLEDLLLNIDKHSDFNKITTKIENFGLNYYEEKHEEWEKIDDLHIKMLGDSTNLPLISVVITTVSLEDLYAKIGARNPHNKQHTISEVLIEVQPIEMVLNLDQITEFMVPICEVLEIIGNSASAQSANKPSAPVPSKITTVQDLPMVHLNSKGIYVYLPLSTGKKSCSVLLLRIESIQLTPSLENPLVRQLVRPDIYQKAAELNMLSTPGALVEDRQYELSVRRVSLSTGNWKQTQEYRIEKTLASKHDNPAFEWNNQSQSTELDHMEIFKDFDFIMIYAPAISYDRFLVCGQSVEYNCATDFVASLNTHQISLISCIIVRAQRLGCIIDQVCVKNAELPKARSHKTLGNISKYNSVDNSIYFPADPKVFKKDTWIPKSSKKLVSERLSYTNASTSFTDAKGSSDYFYGSCQSDSGIHLGTRMKGYSRSLAAEEINRSGRQPFVLSYPSSVSFVAGIFVLKIYDVLELEELERPVMKPLFLMTVSQPSFMSTQNFKAAVTQASIFNVNISVAKADVDGKVDSERFNESVFATLPGQLGSSGIPPPLLTIKTQYDRLHQKEVDVELRKPILLRICENTIKQLASDVFRIYTVLHETPCFNVRSPRPVPEGSQLRQLKMNCYNADRFHLSCDRITAKFYDEERSYKCSFVWLDVSTRIKFSSRPQKAVIRSNIGSFYVQSGEKMLLHPLLMRLSVDLVSEPWSEELLVNATLKLNYLHIDAGVFSILQLQKAQQGVNRIREYADREWQQFLRSRPVLGTPKDVSPCNLIKCTPSHESIERIKRPLKSNAEFYQDDLRAGAFQFVYLNSESVLPMPYQVQIIKKNYGIICWRYPQPRQMTSIHIYPVPMPVSRPIHIRCRMEYFSETHETFLHYCDFMLSETSTKQLTPPDRPICATIWRVVILQSLISVDGTCFEGSEDEDLSIEYLQSDFKVDENNDFILHPKVLVGCMRIDTVFRAEKVPKLQLLLCCQDIELNFVNQTDNTGELPKQLNKYRLRQTPNITQTFLTVHVEDLQMHSRIYSRNDFSLQTEMRARVKCLDYGFLNMLDVLEPMKFSSYVRLTDYPRSLVQANFLVDKLRLNCGPHVIHTLLSSKYHWQEVLQQKDVRHVLMPKLVIVNRIQTPISFGQTNTVEKIPVNPGEVQLYHFRSCSHVQELTFFITNPKTLLVDSSDSVHIALKFEDEEKIHNLRVGEYCITLKLAKLSTTQIYILVKGQIELVSMVPFNLVTEFREEEINYDESTPPEHLLLSKERSSYYQNVKRNADINMRLKLTAGLGRGRTGDIPLKTNNNLPWLVKVPTQSAQQFISIWVRILREDIKMDKPAEDFQPQKILICIWPIFEICNMLSCAVKATESTTGESSTIEAMGGRWALNTATTHATEHNIGFTFSGILRGSSKDEYSLMLRTMDWHKFFYYDPTVWTIENALHKLGKSSKRKWPLNDPEELRVSRVLDFENAFDVKYQTKATREFSCCQGLDVTAWGMFINGTGLYVAIFMIQEQARLDLKANSLQMMPKLKSAFTIDVRFDNGWKSSTPICLEDFTQKSSSNAGRSLYLRYNSFVDIVIVERDEVLRLILEYRQEDDGRRLFKLRSKFVFTNFTDVVLNALTLAMDHKENSTREEVEAYSICKKARSLVSSESTKNCSGNAMDVFYDLNAHKAKHNCDTAFVYFVCFSVGGSREISIPIPLAVPFTRRCFSLQAGPESIPLMITLIEKDNVHYLNVFRDTAPAIVISNNTNVKFIVAQTSASENSNVSCTNSEFVGRNFEWNQLVLPHSNCYYTPPQMYANFPDVEFTMCNLSLAVYKDKLCAKNKIAWSKPIRTDKSWQKFLHVPHHGDVKVVVCDKHRAIRLNIYYIAQQLEFSVKDLRSRLTKPENVLMPSQEQAAPRPDESSEQENDTKRVTLPNMVTCAHFNEECESKTQTRIKIFIKSFVFSLQTDNRENDFVKTEVCNIYADDSMLIYDDDDDQRELRLQLPNLQVDNQLYSSGKYDFPVLLCAEKLYRRNCSLPQVYDLDHVYKQQAQRTPVSLFTFIFYQDEMQLQNVRCQIPPFRVYIEDAYLNQLLEALVECEPSNCVYSPPVEQDQILLPAGMTLLPDQVVAQSLYISEPLRLNSFTVEPLNLLLSVHTSSRLYIALDHSPLSFSRYERQQILTVPLRFGQSLGLHYLSGAIFGAGWVVGSLEILGSPSGLARSFSTGLRDFVSMPVQGLFRGPWGFLVGVTQGSASLLRNVTAGTVNSVTKLAGSVARNLDRLTLDAEHIELTEARRRARPQGFADGLTQGLTGLGISLLGAVGGLAHHTLEARSSVGVIAGLTKGIVGALTKPISGAAEMLALTGQGVLHTVGFNAMPQQVEPSFIRNVALHGSSNRIWSYLPEELSRDQMLFFSEIMLQISTQLRPALLFLTSSVLAIMQSDSEDLAFASPISKVDVLADREDPSKLYLSLKSERRDDFEGQLNYTNERIMKFLNASRLQSIANDSLNDLLQLHELDVDDRIQRQSQCIFYIKPNIGEHLIHYLKVISRIQH", "length": 3731 }, "evidence": [ { "id": "F1S0N9", "url": "https://omabrowser.org/oma/group/F1S0N9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "pmid": "" }, { "name": "acrosomal membrane", "id": "GO:0002080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002080", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "pmid": "" }, { "name": "adipose tissue development", "id": "GO:0060612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060612", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "pmid": "" }, { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": "https://www.uniprot.org/uniprotkb/F1S0N9" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F1S0N9", "url": 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"length": 1307, "header": "tr|A0A287A0H6-1|F1RQ49_PIG Computationally mapped isoform of ALF transcription elongation factor 2 OS=Sus scrofa OX=9823 GN=AFF2 PE=3 SV=2 CANONICAL=F1RQ49-1" }, "locus": { "chromosome": "X", "start_pos": 121259225, "end_pos": 120777746, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041296.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041296.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037434.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037434.2" } ] } }, { "isoform_ac": "F1RQ49-1", "url": "https://www.uniprot.org/uniprotkb/F1RQ49/entry", "sequence": { "sequence": "MDLFDFFRDWDLEQQCHYEQDRSALKKREWERRNQEVQQEDDLFSSGFDLFGEPYKTNKGDALANRVQNTLGNYDEMKDLLANHSNQNHLVGIPKNTVPQTPINKNEPSFFPEQKNRMIPPHQDNTHASGPMPPPSVVILNSTLIHSNRKSKPDWPRDGHNPSIVPASQAGGQPSKMAPTTQDQPPARLEDFFVYPAEQPQVGTVEEPNPPVKEDSGGDTFKEIFQSNSPEESEFTVQTPGSPLVASSLLAPSSGLSVQNFPPGLYCKTSMGQQKPTAYVRPMDGQDQAPDISPTLKPSIEFENSFGNLSFGSLLDGKPSAPSSKTKLPKFTILQTSEVSLPSDPSCVEEILRESQHLTPGFALQKWSDPTSRASTKSVPFKSMLEDDLKLSSDEDDLEPVKTLTTQCTATELYQAVEKAKPKNNPVNPLLATPQPPAAAPASGGSGSSSDSESSSESDSDTESSTTDSESNEAPRVATPEPEPPSTNKWQLDKWLNKVTSQNKSFICGQNETPMETISVPPPVIQPMEVQVKVKTNPSQVLAEPKERPLLSLIREKARPRPAPKTPETKALKHKLSTTLETASQRTIGKKQPKRVEKNTSIDEFTWPKPNITSSAPKDKESVELPDPPRGRSKATAHKPVPRKEPRPSIPLAAEKKKYRGPGKIVPKSREFIETDSSTSDSNTDQEETLQIKVLPPCMAPGGNTAKSKEACGASLTLSSFISSANGNNPSVTNEEPTFSPIPVLQTELLSPLRDHENLKNLWVKIDLDLLSRVPGHNSLQAAPAKPDHKETAPKPKRQAAAAAAEKAAPNRKRKHKPTEVAEKIPEKKQRLEEAATICLLPPCISPAPPQKPPNTKENNASRRANRRKEEKLFPPPLSPLPEDPPRRRNVSGNTGPFSQDKSIPPIGQITSTKPKRSEGKFCATFKGISEGDTPKKAASATVTVTNTALATATVTATAIVTATVTATATATATATTTTTTTTISTITSTITTGLMDSSHLEMTSWAALPLLSSSTTNVRRPKLTFDDSVHNADYYMQEAKKLKHKADALFEKFGKAVNYADAALSFTECGNAMERDPLEAKSPYTMYSETVELLRYAMRLKNFASPLASDGDKKLAVLCYRCLSLLYLRMFKLKKDHAMKYSRSLMEYFKQNASKVAQIPSPWVGNGKNTPSPVSLNNVSPINAMGNCNNGPVTIPQRIHHMAASHVNITSNVLRGYEHWDMADKLTRENREFFGDLDTLMGPLTQHSSMTNLVRYVRQGLCWLRIDAHLL", "length": 1272, "header": "tr|F1RQ49-1|F1RQ49_PIG Isoform 1 of ALF transcription elongation factor 2 OS=Sus scrofa OX=9823 GN=AFF2 PE=3 SV=6 CANONICAL=F1RQ49-1" }, "locus": { "chromosome": "X", "start_pos": 121259225, "end_pos": 120777746, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013917.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013917.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013534.6", "url": "https://www.ensembl.org/id/ENSSSCP00000013534.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A0H6", "url": "https://www.uniprot.org/uniprotkb/A0A287A0H6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1RQ49", "url": "https://www.uniprot.org/uniprotkb/F1RQ49" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RQ49", "url": "https://www.uniprot.org/uniprotkb/F1RQ49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1RQ49", "url": "https://www.uniprot.org/uniprotkb/F1RQ49" } ], "pmid": "" }, { "name": "nervous system process", "id": "GO:0050877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050877", "evidence": [ { "database": "UniProtKB", "id": "F1RQ49", "url": "https://www.uniprot.org/uniprotkb/F1RQ49" } ], "pmid": "" }, { "name": "regulation of RNA splicing", "id": "GO:0043484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043484", "evidence": [ { "database": "UniProtKB", "id": "F1RQ49", "url": "https://www.uniprot.org/uniprotkb/F1RQ49" } ], "pmid": "" }, { "name": "DNA-templated transcription elongation", "id": "GO:0006354", "url": 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}, { "id": "F1RWP0", "url": "https://www.orthodb.org/?gene=F1RWP0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10210", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10210", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10210:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10210:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13793", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13793", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131222", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A1P5", "url": "https://www.uniprot.org/uniprotkb/A0A287A1P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1P5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWP0-1", "url": "https://www.uniprot.org/uniprotkb/F1RWP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKKLLLLPPLSVSSAFRAPRACPASRPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSIDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 385, "header": "tr|F1RWP0-1|F1RWP0_PIG Isoform 1 of Phosphoribosyl pyrophosphate synthetase associated protein 1 OS=Sus scrofa OX=9823 GN=PRPSAP1 PE=1 SV=1 CANONICAL=F1RWP0-1" }, "isoforms": [ { "isoform_ac": "A0A287A1P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1P5/entry", "sequence": { "sequence": "MPKKLLLLPPLSVSSAFRAPRACPASRPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKADSFFFLLLVLLFLFYFTGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSIDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 402, "header": "tr|A0A287A1P5-1|F1RWP0_PIG Computationally mapped isoform of Phosphoribosyl pyrophosphate synthetase associated protein 1 OS=Sus scrofa OX=9823 GN=PRPSAP1 PE=1 SV=2 CANONICAL=F1RWP0-1" }, "locus": { "chromosome": "12", "start_pos": 5173791, "end_pos": 5144292, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063667.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063667.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037846.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037846.2" } ] } }, { "isoform_ac": "F1RWP0-1", "url": "https://www.uniprot.org/uniprotkb/F1RWP0/entry", "sequence": { "sequence": "MPKKLLLLPPLSVSSAFRAPRACPASRPAMNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCAELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSIDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 385, "header": "tr|F1RWP0-1|F1RWP0_PIG Isoform 1 of Phosphoribosyl pyrophosphate synthetase associated protein 1 OS=Sus scrofa OX=9823 GN=PRPSAP1 PE=1 SV=1 CANONICAL=F1RWP0-1" }, "locus": { "chromosome": "12", "start_pos": 5173791, "end_pos": 5144292, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018709.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018709.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018208.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018208.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1P5", "url": "https://www.uniprot.org/uniprotkb/A0A287A1P5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517776", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517776", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AKA5-1", "protein_name": "Phosphoribosyl pyrophosphate synthetase associated protein 1", "gene_name": "PRPSAP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNAARSGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTSCARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLIQYIQEEIPDYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTEQDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIFVMATHGLLSADAPRLIEESSIDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 356 }, "evidence": [ { "id": "F1RWP0", "url": "https://omabrowser.org/oma/group/F1RWP0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q08DW2-1", "protein_name": "Phosphoribosyl pyrophosphate synthase-associated protein 1", "gene_name": "PRPSAP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIQESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCAEMDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYRIYVMATHGILSAEAPRLIEESSIDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 356 }, "evidence": [ { "id": "F1RWP0", "url": "https://omabrowser.org/oma/group/F1RWP0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q14558-1", "protein_name": "Phosphoribosyl pyrophosphate synthase-associated protein 1", "gene_name": "PRPSAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESSVDEVVVTNTVPHEVQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 356 }, "evidence": [ { "id": "F1RWP0", "url": "https://omabrowser.org/oma/group/F1RWP0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54QU9-1", "protein_name": "Ribose-phosphate pyrophosphokinase C", "gene_name": "prsC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKTMESVRLISGSAHPQFAELLSKGMNIELSKCESKHFLNGETSVILGESVRSASVYIIQPTCSPNVNDNIMELLVLVDAVRRASSKHITAVIPFFGYGKQNKKEKSREPITGKLIANLIETSGVDRVISMDLEASQIQGFFNIPVDNLYAEPLIVKYIEKHYKHLGEKVVISPAVDGVKRAKLVSDKLNCDLAILDRQTKGDKEDMILVGDVSGKVAIIIGSIADTCETLALSAKILKSKGATNVFALVSHGELSGNAIETLNNSELEELVITNSIPQTEKSKQCPKLKIINVTPMFCEALKRIIHGESITAASSKFVIL", "length": 321 }, "evidence": [ { "id": "F1RWP0", "url": "https://omabrowser.org/oma/group/F1RWP0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q63468-1", "protein_name": "Phosphoribosyl pyrophosphate synthase-associated protein 1", "gene_name": "Prpsap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFCFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAETLKERGAYKIYVMATHGILSAEAPRLIEESPIDEVVVTNTVPHELQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 356 }, "evidence": [ { "id": "F1RWP0", "url": "https://omabrowser.org/oma/group/F1RWP0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D0M1-1", "protein_name": "Phosphoribosyl pyrophosphate synthase-associated protein 1", "gene_name": "Prpsap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNAARTGYRVFSANSTAACTELAKRITERLGAELGKSVVYQETNGETRVEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIPYFPYSKQSKMRKRGSIVCKLLASMLAKAGLTHIITMDLHQKEIQGFFSFPVDNLRASPFLLQYIQEEIPNYRNAVIVAKSPDAAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKPPITVVGDVGGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSAEAPRLIEESPIDEVVVTNTVPHELQKLQCPKIKTVDISLILSEAIRRIHNGESMAYLFRNITVDD", "length": 356 }, "evidence": [ { "id": "F1RWP0", "url": "https://omabrowser.org/oma/group/F1RWP0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" }, { "name": "enzyme regulator activity", "id": "GO:0030234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030234", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "5-phosphoribose 1-diphosphate biosynthetic process", "id": "GO:0006015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006015", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" }, { "name": "purine nucleotide biosynthetic process", "id": "GO:0006164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006164", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" }, { "name": "nucleotide biosynthetic process", "id": "GO:0009165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009165", "evidence": [ { "database": "UniProtKB", "id": "F1RWP0", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RWP0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 385, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RWP0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RWP0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RWP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWP0" }, { "id": "PF13793", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13793" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ribose-phosphate pyrophosphokinase N-terminal", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 155, "start_aa": "Thr", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S3H9-1", "uniprot_ac": "F1S3H9", "uniprot_id": "F1S3H9_PIG", "mass": { "chemical_mass": 186510.0, "monoisotopic_mass": 186510.0 }, "refseq": { "ac": "XP_005654909", "name": "complement C3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654909" }, "gene_names": [ { "name": "LOC100517145", "type": "recommended", "evidence": [ { "id": "F1S3H9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3H9" } ] }, { "name": "LOC100517145", "type": "synonym", "evidence": [ { "id": "XP_005654909", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654909" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1S3H9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3H9/entry#names_and_taxonomy" } ] }, { "name": "complement C3", "type": "synonym", "evidence": [ { "id": "XP_005654909", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654909" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S3H9", "url": "https://www.uniprot.org/uniprotkb/F1S3H9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100517145", "url": "https://www.uniprot.org/uniprotkb/F1S3H9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000013665", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013665", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02896", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02896", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517145", "url": "https://www.ncbi.nlm.nih.gov/gene/100517145", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041425", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517145", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517145", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FGTWTIE", "url": "https://omabrowser.org/oma/group/FGTWTIE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S3H9", "url": "https://www.orthodb.org/?gene=F1S3H9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11412:SF111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11412:SF111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00207", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00207", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01821", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01821", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01835", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01835", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07677", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07677", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07678", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07678", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07703", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07703", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17789", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17789", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17790", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17790", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21308", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21308", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005654909", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654909", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A5Z8", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5U4", "url": "https://www.uniprot.org/uniprotkb/A0A287B5U4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5U4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8S9", "url": "https://www.uniprot.org/uniprotkb/A0A287B8S9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8S9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3H9", "url": "https://www.uniprot.org/uniprotkb/F1S3H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3H9-1", "url": "https://www.uniprot.org/uniprotkb/F1S3H9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVPWPLGLILLLLGAQVVHAEPLYMLVTPRVLRVSSPENIHVQAHSDSGEPLTRPLEVNLTVWDFPMKKTIVARSQLILSPENNFMDQTPVTIPKKLVYPPQPGTQYVIIQARWAPTSVSSSMEKLVLVAPHAGYIFIQTDKTIYTPEHLVQYRVYTVDHKMDPVTRTFTLDIKNPQGVTVISQDFQAKDGVLASSFPLPELISLGTWSIEASYQSAPKQKFKAAFEVKEYVLPSFEVQLKPNKTFFYLNDYALGVNIQAQYIFNKPVNGHALAIFGVKLDSRQISIQKSLRRVEISEGQGHVTLQKDTLMAEFQGPEEDFIGASIFVNVTVFSSGGEMVQAETSGVKIVRSPYNIKFTRTPQYFKPGMPFHFRVFVSNPDGSPASRVLIRFKDHRVHTSSSGVATLTINTNANMQELPIQVETDEPLRPEEQASATMTAWPYSTQDNSGNFLHIEVKTLGTEVGSNIQLSLNTRHQNPATKNQIRYFTIMVLSKGRIVYAKHQVKSQGSVYTSAIIDVTSEMLPSFRIVAFYLLPRGRGQDPELVADSIWIDVNDRCMGTLKVGMKNEGYLQPVQPSSRVEVKVTGDAEATVGLVAVDKAVYVLNSKHKLTQKKVWDTVEEHDIGCTAGSGKDRLAVFKDAGLDMKMSTGMDTLASSDWQCPKTSPPTRQRRSLKRLETKRNAVNKFETELERKCCEAGLRESPAGLSCGERTRHVRYGPDCVAAFLSCCRLSEALTREAREEQLLLGTMDEDEDFDDIFLEDQPVRSLFPESWFWRKITLPQSESGISDLITSVTVPDSITTWQFVAISVKAGQGLCVSDPFELTVTKWFFVDLKLPFSVIRNEQVQIQAVLYNFMTNPVKVRVEFPYKESLCSAAKPGAPSRQVVTVPPTSSKMVPFVLLPLEIGKVDVEVRAGAFGIQDHVRKTLLVQAGGQIKQVSHSIFLNPQGQTQTELVPKQEILDKTPNTEAEVFVSVQGDILAETILGSLTPRETQRLLRVPTGCPEQTLSSLTPAIILTRYLDATGQWNKVGVEHREMVMKNIVSGYSRMLTHRSADGTYHTSKGNPGSTWLTSYVFRVFALAYPIMSFSVLDLPSLCGLAKWIINQRQERDGSFSEEGPVVMASMQGGYQGSEADVSLTALVLIALNEGKELCHQEIPNLEARMKKATGFLEEKLFQIQTTFAIAIVSYALALSRSPRANDRLDRFASLDKTYWPVDDLNKNSLYSIEATAYALMQKLELGRLNETFAIAKWLLEMRELGGGFQSTQTTVVAIEALTRYSEAVPFDGIQNLHVQIKAPKRALNVQWSIDENNAYQLRSAKFSAQDDLEIKASGSGRGTISILTMYYRSPEFWKDTCNLYHLNVTLHTAQEENKKGEETFQLRMKTRFQGYREATMTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLGFRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPSPKKDSNHVRQEELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGTDSVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWPAEGTAGKKELLDQLEGFSEYMRTHGCES", "length": 1660, "header": "tr|F1S3H9-1|F1S3H9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517145 PE=1 SV=3 CANONICAL=F1S3H9-1" }, "isoforms": [ { "isoform_ac": "A0A287A5Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z8/entry", "sequence": { "sequence": "MDVPWPLGLILLLLGAQVVHAEPLYMLVTPRVLRVSSPENIHVQAHSDSGEPLTRPLEVNLTVWDFPMKKTIVARSQLILSPENNFMDQTPVTIPKKLVYPPQPGTQYVIIQARWAPTSVSSSMEKLVLVAPHAGYIFIQTDKTIYTPEHLVQYRVYTVDHKMDPVTRTFTLDIKNPQGVTVISQDFQAKDGVLASSFPLPELISLGTWSIEASYQSAPKQKFKAAFEVKEYVLPSFEVQLKPNKTFFYLNDYALGVNIQAQYIFNKPVNGHALAIFGVKLDSRQISIQKSLRRVEISEGQGHVTLQKDTLMAEFQGPEEDFIGASIFVNVTVFSSGGEMVQAETSGVKIVRSPYNIKFTRTPQYFKPGMPFHFRVFVSNPDGSPASRVLIRFKDHRVHTSSSGVATLTINTNANMQELPIQVETDEPLRPEEQASATMTAWPYSTQDNSGNFLHIEVKTLGTEVGSNIQLSLNTRHQNPATKNQIRYFTIMVLSKGRIVYAKHQVKSQGSVYTSAIIDVTSEMLPSFRIVAFYLLPRGRGQDPELVADSIWIDVNDRCMGTLKVGMKNEGYLQPVQPSSRVEVKVTGDAEATVGLVAVDKAVYVLNSKHKLTQKKVWDTVEEHDIGCTAGSGKDRLAVFKDAGLDMKMSTGMDTLASSDWQCPKTSPPTRQRRSLKRLETKRNAVNKFETELERKCCEAGLRESPAGLSCGERTRHVRYGPDCVAAFLSCCRLSEALTREAREEQLLLGTMDEDEDFDDIFLEDQPVRSLFPESWFWRKITLPQSESGISDLITSVTVPDSITTWQFVAISVKAGQGLCVSDPFELTVTKWFFVDLKLPFSVIRNEQVQIQAVLYNFMTNPVKVRVEFPYKESLCSAAKPGAPSRQVVTVPPTSSKMVPFVLLPLEIGKVDVEVRAGAFGIQDHVRKTLLVQAGGQIKQVSHSIFLNPQGQTQTELVPKQEILDKTPNTEAEVFVSVQGDILAETILGSLTPRETQRLLRVPTGCPEQTLSSLTPAIILTRYLDATGQWNKVGVEHREMVMKNIVSGYSRMLTHRSADGTYHTSKGNPGSTWLTSYVFRVFALAYPIMSFSVLDLPSLCGLAKWIINQRQERDGSFSEEGPVVMASMQGGYQGSEADVSLTALVLIALNEGKELCHQEIPNLEARMKKATGFLEEKLFQIQTTFAIAIVSYALALSRSPRANDRLDRFASLDKTYWPVDDLNKNSLYSIEATAYALMQKLELGRLNETFAIAKWLLEMRELGGGFQSTQTTVVAIEALTRYSEAVPFDGIQNLHVQIKAPKRALNVQWSIDENNAYQLRSAKFSAQDDLEIKASGSGRGTISILTMYYRSPEFWKDTCNLYHLNVTLHTAQEENKKGEETFQLRMKTRFQGYREATMTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLGFRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEVYKARLESVEASTSNPYIYYNMQLQAIIKSGTDSVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWPAEGTAGKKELLDQLEGFSEYMRTHGCES", "length": 1631, "header": "tr|A0A287A5Z8-1|F1S3H9_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517145 PE=1 SV=1 CANONICAL=F1S3H9-1" }, "locus": { "chromosome": "2", "start_pos": 68920657, "end_pos": 68890574, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052304.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052304.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039367.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039367.1" } ] } }, { "isoform_ac": "A0A287B5U4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5U4/entry", "sequence": { "sequence": "MDVPWPLGLILLLLGAQVVHAEPLYMLVTPRVLRVSSPENIHVQAHSDSGEPLTRPLEVNLTVWDFPMKKTIVARSQLILSPENNFMDQTPVTIPKKLVYPPQPGTQYVIIQARWAPTSVSSSMEKLVLVAPHAGYIFIQTDKTIYTPEHLVQYRVYTVDHKMDPVTRTFTLDIKNPQGVTVISQDFQAKDGVLASSFPLPELISLGTWSIEASYQSAPKQKFKAAFEVKEYVLPSFEVQLKPNKTFFYLNDYALGVNIQAQYIFNKPVNGHALAIFGVKLDSRQISIQKSLRRVEISEGQGHVTLQKDTLMAEFQGPEEDFIGASIFVNVTVFSSGGEMVQAETSGVKIVRSPYNIKFTRTPQYFKPGMPFHFRVFVSNPDGSPASRVLIRFKDHRVHTSSSGVATLTINTNANMQELPIQVETDEPLRPEEQASATMTAWPYSTQDNSGNFLHIEVKTLGTEVGSNIQLSLNTRHQNPATKNQIRYFTIMVLSKGRIVYAKHQVKSQGSVYTSAIIDVTSEMLPSFRIVAFYLLPRGRGQDPELVADSIWIDVNDRCMGTLKVGMKNEGYLQPVQPSSRVEVKVTGDAEATVGLVAVDKAVYVLNSKHKLTQKKVWDTVEEHDIGCTAGSGKDRLAVFKDAGLDMKMSTGMDTLASSDWQCPKTSPPTRQRRSLKRLETKRNAVNKFETELERKCCEAGLRESPAGLSCGERTRHVRYGPDCVAAFLSCCRLSEALTREAREEQLLLGTMDEDEDFDDIFLEDQPVRSLFPESWFWRKITLPQSESGISDLITSVTVPDSITTWQFVAISVKAGQGLCVSDPFELTVTKWFFVDLKLPFSVIRNEQVQIQAVLYNFMTNPVKVRVEFPYKESLCSAAKPGAPSRQVVTVPPTSSKMVPFVLLPLEIGKVDVEVRAGAFGIQDHVRKTLLVQAGGQIKQVSHSIFLNPQGQTQTELVPKQEILDKTPNTEAEVFVSVQGDILAETILGSLTPRETQRLLRVPTGCPEQTLSSLTPAIILTRYLDATGQWNKVGVEHREMVMKNIVSGYSRMLTHRSADGTYHTSKGNPGSTWLTSYVFRVFALAYPIMSFSVLDLPSLCGLAKWIINQRQERDGSFSEEGPVVMASMQGGYQGSEADVSLTALVLIALNEGKELCHQEIPNLEARMKKATGFLEEKLFQIQTTFAIAIVSYALALSRSPRANDRLDRFASLDKTYWPVDDLNKNSLYSIEATAYALMQKLELGRLNETFAIAKWLLEMRELGGGFQSTQTTVVAIEALTRYSEAVPFDGIQNLHVQIKAPKRALNVQWSIDENNAYQLRSAKILTMYYRSPEFWKDTCNLYHLNVTLHTAQEENKKGEETFQLRMKTRFQGYREATMTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLGFRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPSPKKDSNHVRQEELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGTDSVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWPAEGTAGKKELLDQLEGFSEYMRTHGCES", "length": 1640, "header": "tr|A0A287B5U4-1|A0A287B5U4_PIG Computationally mapped isoform of Complement C3 OS=Sus scrofa OX=9823 GN=LOC100517145 PE=1 SV=1 CANONICAL=F1S3H9-1" }, "locus": { "chromosome": "2", "start_pos": 68920657, "end_pos": 68890574, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064148.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064148.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051670.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051670.1" } ] } }, { "isoform_ac": "A0A287B8S9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8S9/entry", "sequence": { "sequence": "MDVPWPLGLILLLLGAQVVHAEPLYMLVTPRVLRVSSPENIHVQAHSDSGEPLTRPLEVNLTVWDFPMKKTIVARSQLILSPENNFMDQTPVTIPKKLVYPPQPGTQYVIIQARWAPTSVSSSMEKLVLVAPHAGYIFIQTDKTIYTPEHLVQYRVYTVDHKMDPVTRTFTLDIKNPQGVTVISQDFQAKDGVLASSFPLPELISLGTWSIEASYQSAPKQKFKAAFEVKEYVLPSFEVQLKPNKTFFYLNDYALGVNIQAQYIFNKPVNGHALAIFGVKLDSRQISIQKSLRRVEISEGQGHVTLQKDTLMAEFQGPEEDFIGASIFVNVTVFSSGGEMVQAETSGVKIVRSPYNIKFTRTPQYFKPGMPFHFRVFVSNPDGSPASRVLIRFKDHRVHTSSSGVATLTINTNANMQELPIQVETDEPLRPEEQASATMTAWPYSTQDNSGNFLHIEVKTLGTEVGSNIQLSLNTRHQNPATKNQIRYFTIMVLSKGRIVYAKHQVKSQGSVYTSAIIDVTSEMLPSFRIVAFYLLPRGRGQDPELVADSIWIDVNDRCMGTLKVGMKNEGYLQPVQPSSRVEVKVTGDAEATVGLVAVDKAVYVLNSKHKLTQKKVWDTVEEHDIGCTAGSGKDRLAVFKDAGLDMKMSTGMDTLASSDWQCPKTSPPTRQRRSLKRLETKRNAVNKFETELERKCCEAGLRESPAGLSCGERTRHVRYGPDCVAAFLSCCRLSEALTREAREEQLLLGTMDEDEDFDDIFLEDQPVRSLFPESWFWRKITLPQSESGISDLITSVTVPDSITTWQFVAISVKAGQGLCVSDPFELTVTKWFFVDLKLPFSVIRNEQVQIQAVLYNFMTNPVKVRVEFPYKESLCSAAKPGAPSRQVVTVPPTSSKMVPFVLLPLEIGKVDVEVRAGAFGIQDHVRKTLLVQAGGQIKQVSHSIFLNPQGQTQTELVPKQEILDKTPNTEAEVFVSVQGDILAETILGSLTPRETQRLLRVPTGCPEQTLSSLTPAIILTRYLDATGQWNKVGVEHREMVMKNIVSGYSRMLTHRSADGTYHTSKGNPGSTWLTSYVFRVFALAYPIMSFSVLDLPSLCGLAKWIINQRQERDGSFSEEGPVVMASMQGGYQGSEADVSLTALVLIALNEGKELCHQEIPNLEARMKKATGFLEEKLFQIQTTFAIAIVSYALALSRSPRANDRLDRFASLDKTYWPVDDLNKNSLYSIEATAYALMQKLELGRLNETFAIAKWLLEMRELGGGFQSTQLYPSALSVIKAPKRALNVQWSIDENNAYQLRSAKILTMYYRSPEFWKDTCNLYHLNVTLHTAQEENKKGEETFQLRMKTRFQGYREATMTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLGFRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPSPKKDSNHVRQEELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGTDSVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWPAEGTAGKKELLDQLEGFSEYMRTHGCES", 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"length": 1641, "header": "tr|A0A5G2QAW9-1|A0A5G2QAW9_PIG Computationally mapped isoform of Complement C3 OS=Sus scrofa OX=9823 GN=LOC100517145 PE=1 SV=2 CANONICAL=F1S3H9-1" }, "locus": { "chromosome": "2", "start_pos": 68920657, "end_pos": 68890574, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073176.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073176.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061567.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061567.2" } ] } }, { "isoform_ac": "F1S3H9-1", "url": "https://www.uniprot.org/uniprotkb/F1S3H9/entry", "sequence": { "sequence": "MDVPWPLGLILLLLGAQVVHAEPLYMLVTPRVLRVSSPENIHVQAHSDSGEPLTRPLEVNLTVWDFPMKKTIVARSQLILSPENNFMDQTPVTIPKKLVYPPQPGTQYVIIQARWAPTSVSSSMEKLVLVAPHAGYIFIQTDKTIYTPEHLVQYRVYTVDHKMDPVTRTFTLDIKNPQGVTVISQDFQAKDGVLASSFPLPELISLGTWSIEASYQSAPKQKFKAAFEVKEYVLPSFEVQLKPNKTFFYLNDYALGVNIQAQYIFNKPVNGHALAIFGVKLDSRQISIQKSLRRVEISEGQGHVTLQKDTLMAEFQGPEEDFIGASIFVNVTVFSSGGEMVQAETSGVKIVRSPYNIKFTRTPQYFKPGMPFHFRVFVSNPDGSPASRVLIRFKDHRVHTSSSGVATLTINTNANMQELPIQVETDEPLRPEEQASATMTAWPYSTQDNSGNFLHIEVKTLGTEVGSNIQLSLNTRHQNPATKNQIRYFTIMVLSKGRIVYAKHQVKSQGSVYTSAIIDVTSEMLPSFRIVAFYLLPRGRGQDPELVADSIWIDVNDRCMGTLKVGMKNEGYLQPVQPSSRVEVKVTGDAEATVGLVAVDKAVYVLNSKHKLTQKKVWDTVEEHDIGCTAGSGKDRLAVFKDAGLDMKMSTGMDTLASSDWQCPKTSPPTRQRRSLKRLETKRNAVNKFETELERKCCEAGLRESPAGLSCGERTRHVRYGPDCVAAFLSCCRLSEALTREAREEQLLLGTMDEDEDFDDIFLEDQPVRSLFPESWFWRKITLPQSESGISDLITSVTVPDSITTWQFVAISVKAGQGLCVSDPFELTVTKWFFVDLKLPFSVIRNEQVQIQAVLYNFMTNPVKVRVEFPYKESLCSAAKPGAPSRQVVTVPPTSSKMVPFVLLPLEIGKVDVEVRAGAFGIQDHVRKTLLVQAGGQIKQVSHSIFLNPQGQTQTELVPKQEILDKTPNTEAEVFVSVQGDILAETILGSLTPRETQRLLRVPTGCPEQTLSSLTPAIILTRYLDATGQWNKVGVEHREMVMKNIVSGYSRMLTHRSADGTYHTSKGNPGSTWLTSYVFRVFALAYPIMSFSVLDLPSLCGLAKWIINQRQERDGSFSEEGPVVMASMQGGYQGSEADVSLTALVLIALNEGKELCHQEIPNLEARMKKATGFLEEKLFQIQTTFAIAIVSYALALSRSPRANDRLDRFASLDKTYWPVDDLNKNSLYSIEATAYALMQKLELGRLNETFAIAKWLLEMRELGGGFQSTQTTVVAIEALTRYSEAVPFDGIQNLHVQIKAPKRALNVQWSIDENNAYQLRSAKFSAQDDLEIKASGSGRGTISILTMYYRSPEFWKDTCNLYHLNVTLHTAQEENKKGEETFQLRMKTRFQGYREATMTIMEVSLLTGFYPNQDDLKQLTSEVERYAFQYETKTTTSDSTVVLYLEKLSHKEDTVLGFRIHRMLQAEFLQSAQVTVYDYYEPSRRCSSFYNLPTEDSSLRKICHKDVCRCAEEQCPSPKKDSNHVRQEELQVAACEIGVDFVYKARLESVEASTSNPYIYYNMQLQAIIKSGTDSVKSLTMKKFVSHTTCHDSLGLEENETYLIMGQTSDLWRVKSEYTHVLGKETFLMHWPAEGTAGKKELLDQLEGFSEYMRTHGCES", "length": 1660, "header": "tr|F1S3H9-1|F1S3H9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC100517145 PE=1 SV=3 CANONICAL=F1S3H9-1" }, "locus": { "chromosome": "2", "start_pos": 68920657, "end_pos": 68890574, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014929.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014929.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014528.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014528.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 894, "start_aa": "Thr", "end_pos": 894, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr894", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Z8", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Z8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517145", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517145", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1S3H9", "url": "https://www.uniprot.org/uniprotkb/F1S3H9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S3H9", "url": "https://www.uniprot.org/uniprotkb/F1S3H9" } ], "pmid": "" }, { "name": "cell 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S260-1", "uniprot_ac": "F1S260", "uniprot_id": "F1S260_PIG", "mass": { "chemical_mass": 107920.0, "monoisotopic_mass": 107920.0 }, "refseq": { "ac": "XP_013836570", "name": "E3 ubiquitin-protein ligase TRIM37 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836570" }, "gene_names": [ { "name": "TRIM37", "type": "recommended", "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ] }, { "name": "TRIM37", "type": "synonym", "evidence": [ { "id": "XP_013836570", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836570" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase TRIM37", "type": "recommended", "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260/entry#names_and_taxonomy" } ] }, { "name": "E3 ubiquitin-protein ligase TRIM37 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_013836570", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836570" } ] }, { "name": "RING-type E3 ubiquitin transferase TRIM37", "type": "synonym", "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260/entry#names_and_taxonomy" } ] }, { "name": "Tripartite motif-containing protein 37", "type": "synonym", "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM37", "url": "https://www.uniprot.org/uniprotkb/F1S260", "locus": { "chromosome": "12", "start_pos": 35260154, "end_pos": 35393430, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023727", "url": "https://www.ensembl.org/id/ENSSSCG00000023727" } ] } } ], "crossref": [ { "id": "F1S260", "url": "https://alphafold.ebi.ac.uk/entry/F1S260", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023727", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023727", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03773", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03773", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16619", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16619", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19779", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19779", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106505457", "url": "https://www.ncbi.nlm.nih.gov/gene/106505457", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106505457", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106505457", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XERNVEA", "url": "https://omabrowser.org/oma/group/XERNVEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR36754", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36754", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36754:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36754:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22486", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22486", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013836570", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836570", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZML2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZML2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZML2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZML2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0H3", "url": "https://www.uniprot.org/uniprotkb/A0A287A0H3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0H3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFZ1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9H2", "url": "https://www.uniprot.org/uniprotkb/A0A287B9H2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9H2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN46", "url": "https://www.uniprot.org/uniprotkb/A0A287BN46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN46-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S260-1", "url": "https://www.uniprot.org/uniprotkb/F1S260-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEDTHSSFPDGEQIGPEDLSFNADETSGR", "length": 963, "header": "tr|F1S260-1|F1S260_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=5 CANONICAL=F1S260-1" }, "isoforms": [ { "isoform_ac": "A0A286ZML2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZML2/entry", "sequence": { "sequence": "MNRALRALLRFSDVSFVWRNCGMHACVLIAPSFVVSAVSGAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEDTHSSFPDGEQIGPEDLSFNADETSGR", "length": 948, "header": "tr|A0A286ZML2-1|F1S260_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=1 CANONICAL=F1S260-1" }, "locus": { "chromosome": "12", "start_pos": 35392996, "end_pos": 35275733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039306.1", "url": "https://www.ensembl.org/id/ENSSSCT00000039306.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032699.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032699.1" } ] } }, { "isoform_ac": "A0A287A0H3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0H3/entry", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEGTTHAR", "length": 942, "header": "tr|A0A287A0H3-1|A0A287A0H3_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=2 CANONICAL=F1S260-1" }, "locus": { "chromosome": "12", "start_pos": 35393000, "end_pos": 35276793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042190.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042190.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037413.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037413.2" } ] } }, { "isoform_ac": "A0A287AFZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFZ1/entry", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEDNLI", "length": 940, "header": "tr|A0A287AFZ1-1|A0A287AFZ1_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=1 CANONICAL=F1S260-1" }, "locus": { "chromosome": "12", "start_pos": 35393000, "end_pos": 35260404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037805.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037805.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042889.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042889.1" } ] } }, { "isoform_ac": "A0A287B9H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9H2/entry", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEDTHSSFPDAAEPLPSQSPCLSPAGQLSVSPYVHLGKPPP", "length": 975, "header": "tr|A0A287B9H2-1|A0A287B9H2_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=3 CANONICAL=F1S260-1" }, "locus": { "chromosome": "12", "start_pos": 35393000, "end_pos": 35264191, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054669.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054669.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052733.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052733.3" } ] } }, { "isoform_ac": "A0A287BN46-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN46/entry", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEDTHSSFPDGEQIGPEDLSFNADETSGRHTDYGTSSLFCVTSTNVVLNELS", "length": 986, "header": "tr|A0A287BN46-1|F1S260_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=1 CANONICAL=F1S260-1" }, "locus": { "chromosome": "12", "start_pos": 35393000, "end_pos": 35275047, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044933.1", "url": "https://www.ensembl.org/id/ENSSSCT00000044933.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057931.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057931.1" } ] } }, { "isoform_ac": "F1S260-1", "url": "https://www.uniprot.org/uniprotkb/F1S260/entry", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDETPETRAKKSGSCADMLLQDCSTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGSNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLLQPAASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKSDVKNTLSEIKGNSAASGDMPASLLSADQAALAACGTENSSRLQDLGMELLAKSSVANCYIRNSANKKSNSPKPARSSIAGSLSLRRAVDSGENSRSKGDCQTLSEGSPVSSHSGSRHSPPRALTHGSVNDILPKSEDRQCQALDSDAIVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMTDLENNSETGELQPILPEGASSAPEEGMSSDSDIECDTENEEQEEHTSMGGFSDSFMAQPPDEDTHSSFPDGEQIGPEDLSFNADETSGR", "length": 963, "header": "tr|F1S260-1|F1S260_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM37 OS=Sus scrofa OX=9823 GN=TRIM37 PE=3 SV=5 CANONICAL=F1S260-1" }, "locus": { "chromosome": "12", "start_pos": 35393000, "end_pos": 35275733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019212.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019212.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018704.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018704.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BN46", "url": "https://www.uniprot.org/uniprotkb/A0A287BN46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106505457", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106505457", "resource": "KEGG Pathway" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TJD4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM37", "gene_name": "TRIM37", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHSGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLVQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDTPETRAKKSGSCADVLLQDGPTTASVREVKEDEEDEEKIQNEDYHHELSDGDLDLDLVGEDEANQLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPPGGNHGYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPPASLQPTASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCKADIKNTLSEIKSSSAASGDMAASLLSADQAALAACGTENSSRLQELGMELLAKSSVASCYIRNSTNKKSHSPKPARSSVAGSLSLRRAIDSGENSRSKGDCQTLAEVSPGSSQSGSRHSSPRALTHVSISDILPKSEDRQCQALDSDAVVVAVFNGVPVVEKRRKMVTLGTNATGSRLEGMQMTDSENNSETGELQPVLPEGASAAPEDGMSSDSDIECDTESEEREERAGMGGFGDAFMAQPPDEDTHSSFPDGEQIGPEDLSFSTDENSGR", "length": 961 }, "evidence": [ { "id": "F1S260", "url": "https://omabrowser.org/oma/group/F1S260/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LE63-1", "protein_name": "E3 ubiquitin-protein ligase TRIM37", "gene_name": "Trim37", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSAEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTGYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDTPETRAKKAGSCSDMLLEGGPTSASVRETKEDEDEEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNSMELEEGELMEDAAAAGPPGSSHSYVGASSRMSRRAHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPSASLLQPTASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKTTLADIKGSSVASADLQTNLFCADQAALATCGPENSGRLQDLGMELLAKSSVAGCYIRNPTNKKNSPKSARAIAGSLSLRRAVDSGENSRSKGDCQALSEGSPGSSQSGSRHSSPRALTHGIIGDLLPKSEDRQCKALDSDAVVVAVFNGLPTVEKRRKMVTLGTNVKGGRLEGMQLADLESPSDAGEVQPTLPEGASAAPEEGMSSDSDIECDTENEEQEEHTSMGAFNDPFLAQPPDEDSHSSFPDGEQIDPENLHFNTDEGSGRCPRLQLCSQKPSKWPPFSALVHLPPFSSCSYKCLEDRPGCAYPQLTRLLPARARSRPSQAGRNTAA", "length": 1027 }, "evidence": [ { "id": "F1S260", "url": "https://omabrowser.org/oma/group/F1S260/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O94972-1", "protein_name": "E3 ubiquitin-protein ligase TRIM37", "gene_name": "TRIM37", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYITQLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDMLLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRRTHLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAALAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDPGENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVVAVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDENSGR", "length": 964 }, "evidence": [ { "id": "F1S260", "url": "https://omabrowser.org/oma/group/F1S260/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PCX9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM37", "gene_name": "Trim37", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYITQLEAAQTGYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDSPETRTKKAGSCSDMLLEGGPTCASVRETKEDEDEEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGENDVEYNSMELEEGELMEDAAAAGPPGSSHSYVGASSRMSRRTHLCSAATSSLLDIDPLILIHLLDLKDRSSMENLWGLQPRPSASLLQPTASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKTTLSDIKGSSVASTDMQTNLFCADQAALTTCGPENSGRLQDLGMELLAKSSVAGCYIRNPTNKKNSPKSARAIAGSLSLRRAVDSGENSRSKGDCQVLAEGSSGSSQSGSRHSSPRALTHGIIGDLLPKSEDRQCKALDSDAVVVAVFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMADLESHSEAGEVQPTLPEGASAAPEEGMSSDSDIECDTENEEQEEHTSMGAFNDPFLAQPPDEDSHSSFPDGEQIDPENLHFNPDEGGGR", "length": 961 }, "evidence": [ { "id": "F1S260", "url": "https://omabrowser.org/oma/group/F1S260/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "tumor necrosis factor receptor binding", "id": "GO:0005164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005164", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "histone H2AK119 ubiquitin ligase activity", "id": "GO:0140862", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140862", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "negative regulation of gene expression, epigenetic", "id": "GO:0045814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045814", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "protein autoubiquitination", "id": "GO:0051865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051865", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "negative regulation of centriole replication", "id": "GO:0046600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046600", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "protein monoubiquitination", "id": "GO:0006513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006513", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "aggresome assembly", "id": "GO:0070842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070842", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "ESC/E(Z) complex", "id": "GO:0035098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035098", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" }, { "name": "aggresome", "id": "GO:0016235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016235", "evidence": [ { "database": "UniProtKB", "id": "F1S260", "url": "https://www.uniprot.org/uniprotkb/F1S260" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 729, "end_pos": 731, "annotation": "n_glycosylation_sequon" }, { "start_pos": 878, "end_pos": 880, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. 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"uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 132, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260" }, { "id": "PS50144", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50144" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MATH", "eco_id": "ECO_0000259", "start_pos": 276, "end_pos": 403, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S260", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S260" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 55, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], 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"table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { 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"MIPLREDSREEGLCPICQEGLKEAVSTDCGHLFCRVCLAQHLGKASASGVLSCPLCRKPCSEGVLGAGYTCHSHQKKVCWFCEESRLLLCVECRGSPEHSSHCELAIENAISHYKERLNRRIRKLKKDACELQRLRAQEERLQTAQFQTDCGTHRLEAGLERQLDALARQGPGHLEDVPAESASDLLNRSAPEQLEYLKKRTSETLLLPSSAALTHSSRGPLISDSPQPPGSPSSNLPSLPPGQPGAPAGLSPEHGPLSSSHSCDVTPDPLTPGQL", "length": 276, "header": "tr|A0ABB5URF5-1|A0ABB5URF5_PIG Computationally mapped isoform of E3 ubiquitin ligase TRIM40 OS=Sus scrofa OX=9823 GN=TRIM40 PE=3 SV=1 CANONICAL=F1RZ46-1" }, "locus": { "chromosome": "7", "start_pos": 22714178, "end_pos": 22703937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107556.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107556.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081947.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081947.1" } ] } }, { "isoform_ac": "F1RZ46-1", "url": "https://www.uniprot.org/uniprotkb/F1RZ46/entry", "sequence": { "sequence": "MIPLREDSREEGLCPICQEGLKEAVSTDCGHLFCRVCLAQHLGKASASGVLSCPLCRKPCSEGVLGAGYTCHSHQKKVCWFCEESRLLLCVECRGSPEHSSHCELAIENAISHYKERLNRRIRKLKKDACELQRLRAQEERLQTAQFQTDCGTHRLEAGLERQLDALARQGPGHLEDVPAEVSRLLGISRAITYLSNLVTDLETVAKKLDVNMLKSASDLLNRSAPEQLEYLKKRTSETLLLPSSAALTHSSRGPLISDSPQPPGSPSSNLPSLPPGQPGAPAGLSPEHGPLSSSHSCDVTPDPLTPGQL", "length": 310, "header": "tr|F1RZ46-1|F1RZ46_PIG Isoform 1 of E3 ubiquitin ligase TRIM40 OS=Sus scrofa OX=9823 GN=TRIM40 PE=3 SV=5 CANONICAL=F1RZ46-1" }, "locus": { "chromosome": "7", "start_pos": 22714178, "end_pos": 22703937, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051045.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051045.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049692.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049692.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics 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"protein_names": [ { "name": "Tetratricopeptide repeat and ankyrin repeat containing 1", "type": "synonym", "evidence": [ { "id": "F1RRD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRD4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRD4", "url": "https://www.uniprot.org/uniprotkb/F1RRD4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRANK1", "url": "https://www.uniprot.org/uniprotkb/F1RRD4", "locus": { "chromosome": "13", "start_pos": 22023156, "end_pos": 21938966, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011239", "url": "https://www.ensembl.org/id/ENSSSCG00000011239" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011239", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011239", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21529", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21529", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21529:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21529:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R628", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R628", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R628-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R628-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9F0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9F0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRD4", "url": "https://www.uniprot.org/uniprotkb/F1RRD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPTTYAELLKESGNQDFKHGNFALAIKKYDEAIRILSQLYQWGVPPRDLAVLLCNKSNAYYSLGKWKEAYMAAKECLQWDPTYMKGYYRAGYSLLRLLQPYEAARMFFDGLELVQGSQDQTQVADFLVGVFTTMGSDPIVLQSFLPCFDHIFSIGFSPEVWQSVIEKLAKKGLWHSFLLLSARKDRLPRNLHVPDLSLKSLFEKYVFIGLYEKMEQVPRLVQWLISVGASVETIGPYPLHALIRLCIRARENHLFRWLMDYKPEWKGRINQKDEDGRTVLHIVAAHSPGYLIKRQTEDVQMLLRFGADPTLLDRQSRSAMDVLKRSKNFKAIEKINSHLGKLAACSKDLSGLSNGEGPASEGEVFQKACEQLVTYMNSGNRLLQKNFLKQEVVQRFLRLLSSLQEIPPDLVYDIDRDCANTFFKFLLEKQKWPEVLLLLTRKVSGEPPLGDCLIKDCDLSNLNLCAILPHLSIWDQRKMQLLGCLIDHGGDLTQGPQDSQERPLTVCLKHKDFELAFLLLTKGADPCCISLTEGDTPLHAALHIFLDIKADIGFNFLSHLLDLFLAKPTEFYYLNPNIQDSLLAKFDINLNLKNKEGKDARHRVKKNDPLLLAWNKALNESRRRGRQDAAAHPAKPLRSTTPAHTAQLKVSSKLLPSGGGGGAARTPPRGAMVPDSWETLPDAQATRPEPGAARPSSQRDRLVQDITALIQQVELDPSLPEDCPQNPEPLETGAGTEGEKDQLQGSSGAGASDLSGNKRVVPEAAEGHTQAGAVSAQVVPAGRKGTENSNDQDDWSVPEIEICLLDFENMTWEIECTSEILKKLSSKVMTKVMKKKIILTIQKLGNGEWTRDLRKRLKNLKGSIQLFEAKLDKGARMLWELAIDFSPRCSENPEKIMAAERSAHPTEKAGRVYTEIIRIWDIVLDHDKLKDSIRAICGAYNRGLSCILRKKLKGINKGQVSANMKIQKRIPRCYVEDTEADQSGAYMEPEYFPPASAVETEYNIMKFHSFSTSMASNILNDTTTTVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAQQAGSPLLARQIWLKRRLELEPGGEEEEEEEEGSIEVEIVHSDEEQESEACAEGANGEPEAPSQGAEGPAPEQPHQLEHLHQIFVTKNHVLCQEVQRNFTELSKSTKATSHYKSLEPSVHRLQDLKDENFPLFVTSKQLLLLLDASLPEPFFLRNEDGSLKRTIVGWSTQEELSIPNWQEDEEEAEADGDYGEEEKVVETRPCDSDPRVYVTFEVFTSEIWPKMIKGKTSYNPALIWKEIKSFLKGSFEALSSPQGRLTEEAYKQLGRKRSPNFKEDRSEIYGLFCLYQQIRSQKGYFDEEDVLYNLSRRLSKLKVLPWSIHELYGDEIQDFTQAELALLMKCINDPNAMFLTGDTAQSIMKGVAFRFSDLRSLFHYASKNTGDKQCAVRKPKKIHQLYQNYRSHSGILSLASGVVDLLQYYFPESFDRLPRDSGLFDGPRPIVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANEMAKEKIPEELGLALVLTVYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPSSESREESRPLMEVPLEKCSSSQGRVLTVNPEMYKLLNGELKQLYTAITRARVNLWIFDENPEKRAPAFKYFMKRNFVQVVKTDENKDLDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKCYQKGGAFEKEKLALAHNTALNMKGKKVSPKEKQVEYLELAKTYLECKEPKLSLKCLSYAKEFQLCAQLCERLGKIRDAACFYKRSQRYKDASRCFEQIQEFNLALKMYCQEELFEEAAMAVEKYEEMLRAKTLPISKLSYSASQFYLEAAAKYLSANKMKEMMAVLSKLDTEDQLAFLKSRKRLAEAADLLNREGRREEAALLMKQHGCLLEAARLTADKDFQASCLLAAARLNVARDSDVDHTKTILKEALDLCHQTNQVSGIAEAHFLQGVVLRDFQKLKDAFLKFDTLNHSAGAVEALYEATSRCEAKPEEVLTLAPWGLEVLLNLVRALKRVTNNAEKEMVKSCFEFFGISQVDAKYCQIAQNDPGPILRIIFDLDLNLREKKTKDHFLIMTDQVKLALNKHLLNRLCQITQSLLRKTYPGVCTRFIVGLKCEDGNCEDFHRPLRRHEAKCLVQSKIHLVAINGLLLEAKKVFPKVLAEELEELDYILPSNKYGLCRSFLDVLFPKHFHQRVLSENPMACKEVLKPHYKSFKFYRSALKEYIHFLFQNERARSRRESTDLWLSAMQAFLLSSSYPDELEKLLHQEEDSYNRELKALQAEKEDRGQGRGSRIKGIEGKFGMLAPNKDDESAEKTHLCFIRLLEDSIHQFYVCRNPEDHKRRFFRFMNVLVKRCKEPLIPSIGNTVALLEFQFIHCGAVLARLRRNSILCLPKSYIALLHYWEFLFSKKDREPGDVFAIIQEYRPKDVNRAIQDFRFHLSYLVKVLCGGENENFNVLLDAFSDIDYVVSGEAERTLVLCLVMLVNAGEVLQPSCKPLLSRHFQEIEARLQLMSLECPGQVPDRLLRAMKRVLLAVNVKSVAEALQDLLFERDEEYLMDCHWRWDSGHTKGTVVRGLYHEEVRLNRLLSVDPVGHLADTECEFGEDESEELALEDRDHLLAAILSQKQRKASIQRKLRRACLVVSLCVSWRRRAGAQTEHSREEGREPGAGNFKKADVDRTQCDLCGVKFTRGPENYFGPDQAFEEAASEADALSRAELEDEDGQEKNSESYEQHIRLEDHQRQQRAYQKYSEFFHEKVEPAIGEGKLVVQDIEQSVWVRSHLGSKEHSHVLQRKVQENIKKVLDTVEDLYRRKAWAGAEEVMAQLVDILILSVRNAREWLRKTELRLRDEGVVQEDDYENEVEDFVELRPRRRSRKCAKQRK", "length": 2938, "header": "tr|F1RRD4-1|F1RRD4_PIG Isoform 1 of Tetratricopeptide repeat and ankyrin repeat containing 1 OS=Sus scrofa OX=9823 GN=TRANK1 PE=4 SV=4 CANONICAL=F1RRD4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R628-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R628/entry", "sequence": { "sequence": "MDPTTYAELLKESGNQDFKHGNFALAIKKYDEAIRILSQLYQWGVPPRDLAVLLCNKSNAYYSLGKWKEAYMAAKECLQWDPTYMKGYYRAGYSLLRLLQPYEAARMFFDGLELVQGSQDQTQVADFLVGVFTTMGSDPIVLQSFLPCFDHIFSIGFSPEVWQSVIEKLAKKGLWHSFLLLSARKDRLPRNLHVPDLSLKSLFEKYVFIGLYEKMEQVPRLVQWLISVGASVETIGPYPLHALIRLCIRARENHLFRWLMDYKPEWKGRINQKDEDGRTVLHIVAAHSPGYLIKRQTEDVQMLLRFGADPTLLDRQSRSAMDVLKRSKNFKAIEKINSHLGKLAACSKDLSGLSNGEGPASEGEVFQKACEQLVTYMNSGNRLLQKNFLKQEVVQRFLRLLSSLQEIPPDLVYDIDRDCANTFFKFLLEKQKWPEVLLLLTRKVSGEPPLGDCLIKDCDLSNLNLCAILPHLSIWDQRKMQLLGCLIDHGGDLTQGPQDSQERPLTVCLKHKDFELAFLLLTKGADPCCISLTEGDTPLHAALHIFLDIKADIGFNFLSHLLDLFLAKPTEFYYLNPNIQDSLLAKFDINLNLKNKEGKDARHRVKKNDPLLLAWNKALNESRRRGRQDAAAHPAKPLRSTTPAHTAQLKVSSKLLPSGGGGGAARTPPRGAMVPDSWETLPDAQATRPEPGAARPSSQRDRLVQDITALIQQVELDPSLPEDCPQNPEPLETGAGTEGEKDQLQGSSGAGASDLSGNKRVVPEAAEGHTQAGAVSAQVVPAGRKGTENSNDQDDWSVPEIEICLLDFENMTWEIECTSEILKKLSSKVMTKVMKKKIILTIQKLGNGEWTRDLRKRLKNLKGSIQLFEAKLDKGARMLWELAIDFSPRCSENPEKIMAAERSAHPTEKAGRVYTEIIRIWDIVLDHDKLKDSIRAICGAYNRGLSCILRKKLKGINKGQVSANMKIQKRIPRCYVEDTEADQSGAYMEPEYFPPASAVETEYNIMKFHSFSTSMASNILNDTTTTVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAQQAGSPLLARQIWLKRRLELEPGGEEEEEEEEGSIEVEIVHSDEEQESEACAEGANGEPEAPSQGAEGPAPEQPHQLEHLHQIFVTKNHVLCQEVQRNFTELSKSTKATSHYKSLEPSVHRLQDLKDENFPLFVTSKQLLLLLDASLPEPFFLRNEDGSLKRTIVGWSTQEELSIPNWQEDEEEAEADGDYGEEEKVVETRPCDSDPRVYVTFEVFTSEIWPKMIKGKTSYNPALIWKEIKSFLKGSFEALSSPQGRLTEEAYKQLGRKRSPNFKEDRSEIYGLFCLYQQIRSQKGYFDEEDVLYNLSRRLSKLKVLPWSIHELYGDEIQDFTQAELALLMKCINDPNAMFLTGDTAQSIMKGVAFRFSDLRSLFHYASKNTGDKQCAVRKPKKIHQLYQNYRSHSGILSLASGVVDLLQYYFPESFDRLPRDSGLFDGPRPIVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANEMAKEKIPEELGLALVLTVYEAKGLEFDDVLLYNFFTDSEVCHL", "length": 1603, "header": "tr|A0A5G2R628-1|F1RRD4_PIG Computationally mapped isoform of Tetratricopeptide repeat and ankyrin repeat containing 1 OS=Sus scrofa OX=9823 GN=TRANK1 PE=4 SV=1 CANONICAL=F1RRD4-1" }, "locus": { "chromosome": "13", "start_pos": 21994273, "end_pos": 21939028, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068424.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068424.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071790.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071790.1" } ] } }, { "isoform_ac": "A0A8W4F9F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9F0/entry", "sequence": { "sequence": "ASLRHSNKGSEPCVIGITGTFPAEILSRWQQPAPEQWRSRTVFCICRMIELFTNYQFVLSHRVPPRDLAVLLCNKSNAYYSLGKWKEAYMAAKECLQWDPTYMKGYYRAGYSLLRLLQPYEAARMFFDGLELVQGSQDQTQVADFLVGVFTTMGSDPIVLQSFLPCFDHIFSIGFSPEVWQSVIEKLAKKGLWHSFLLLSARKDRLPRNLHVPDLSLKSLFEKYVFIGLYEKMEQVPRLVQWLISVGASVETIGPYPLHALIRLCIRARENHLFRWLMDYKPEWKGRINQKDEDGRTVLHIVAAHSPGYLIKRQTEDVQMLLRFGADPTLLDRQSRSAMDVLKRSKNFKAIEKINSHLGKLAACSKDLSEIPPDLVYDIDRDCANTFFKFLLEKQKWPEVLLLLTRKVSGEPPLGDCLIKDCDLSNLNLCAILPHLSIWDQRKMQLLGCLIDHGGDLTQGPQDSQERPLTVCLKHKDFELAFLLLTKGADPCCISLTEGDTPLHAALHIFLDIKADIGFNFLSHLLDLFLAKPTEFYYLNPNIQDSLLAKFDINLNLKNKEGKDARHRVKKNDPLLLAWNKALNESRRRGRQDAAAHPAKPLRSTTPAHTAQLKVSSKLLPSGGGGGAARTPPRGAMVPDSWETLPDAQATRPEPGAARPSSQRDRLVQDITALIQQVELDPSLPEDCPQNPEPLETGAGTEGEKDQLQGSSGAGASDLSGNKRVVPEAAEGHTQAGAVSAQVVPAGRKGTENSNDQDDWSVPEIEICLLDFENMTWEIECTSEILKKLSSKVMTKVMKKKIILTIQKLGNGEWTRDLRKRLKNLKGSIQLFEAKLDKGARMLWELAIDFSPRCSENPEKIMAAERSAHPTEKAGRVYTEIIRIWDIVLDHDKLKDSIRAICGAYNRGLSCILRKKLKGINKGQVSANMKIQKRIPRCYVEDTEADQSGAYMEPEYFPPASAVETEYNIMKFHSFSTSMASNILNDTTTTVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAQQAGSPLLARQIWLKRRLELEPGGEEEEEEEEGSIEVEIVHSDEEQESEACAEGANGEPEAPSQGAEGPAPEQPHQLEHLHQIFVTKNHVLCQEVQRNFTELSKSTKATSHYKSLEPSVHRLQDLKDENFPLFVTSKQLLLLLDASLPEPFFLRNEDGSLKRTIVGWSTQEELSIPNWQEDEEEAEADGDYGEEEKVVETRPCDSDPRVYVTFEVFTSEIWPKMIKGKTSYNPALIWKEIKSFLKGSFEALSSPQGRLTEEAYKQLGRKRSPNFKEDRSEIYGLFCLYQQIRSQKGYFDEEDVLYNLSRRLSKLKVLPWSIHELYGDEIQDFTQAELALLMKCINDPNAMFLTGDTAQSIMKGVAFRFSDLRSLFHYASKNTGDKQCAVRKPKKIHQLYQNYRSHSGILSLASGVVDLLQYYFPESFDRLPRDSGLFDGPRPIVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANEMAKEKIPEELGLALVLTVYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPSSESREESRPLMEVPLEKCSSSQGRVLTVNPEMYKLLNGELKQLYTAITRARVNLWIFDENPEKRAPAFKYFMKRNFVQVVKTDENKDLDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKCYQKGGAFEKEKLALAHNTALNMKGKKVSPKEKQVEYLELAKTYLECKEPKLSLKCLSYAKEFQLCAQLCERLGKIRDAACFYKRSQRYKDASRCFEQIQEFNLALKMYCQEELFEEAAMAVEKYEEMLRAKTLPISKLSYSASQFYLEAAAKYLSANKMKEMMAVLSKLDTEDQLAFLKSRKRLAEAADLLNREGRREEAALLMKQHGCLLEAARLTADKDFQASCLLAAARLNVARDSDVDHTKTILKEALDLCHQTNQVSGIAEAHFLQGVVLRDFQKLKDAFLKFDTLNHSAGAVEALYEATSRCEAKPEEVLTLAPWGLEVLLNLVRALKRVTNNAEKEMVKSCFEFFGISQVDAKYCQIAQNDPGPILRIIFDLDLNLREKKTKDHFLIMTDQVKLALNKHLLNRLCQITQSLLRKTYPGVCTRFIVGLKCEDGNCEDFHRPLRRHEAKCLVQSKIHLVAINGLLLEAKKVFPKVLAEELEELDYILPSNKYGLCRSFLDVLFPKHFHQRVLSENPMACKEVLKPHYKSFKFYRSALKEYIHFLFQNERARSRRESTDLWLSAMQAFLLSSSYPDELEKLLHQEEDSYNRELKALQAEKEDRGQGRGSRIKGIEGKFGMLAPNKDDESAEKTHLCFIRLLEDSIHQFYVCRNPEDHKRRFFRFMNVLVKRCKEPLIPSIGNTVALLEFQFIHCGAVLARLRRNSILCLPKSYIALLHYWEFLFSKKDREPGDVFAIIQEYRPKDVNRAIQDFRFHLSYLVKVLCGGENENFNVLLDAFSDIDYVVSGEAERTLVLCLVMLVNAGEVLQPSCKPLLSRHFQEIEARLQLMSLECPGQVPDRLLRAMKRVLLAVNVKSVAEALQDLLFERDEEYLMDCHWRWDSGHTKGTVVRGLYHEEVRLNRLLSVDPVGHLADTECEFGEDESEELALEDRDHLLAAILSQKQRKASIQRKLRRACLVVSLCVSWRRRAGAQTEHSREEGREPGAGNFKKADVDRTQCDLCGVKFTRGPENYFGPDQAFEEAASEADALSRAELEDEDGQEKNSESYEQHIRLEDHQRQQRAYQKYSEFFHEKVEPAIGEGKLVVQDIEQSVWVRSHLGSKEHSHVLQRKVQENIKKVLDTVEDLYRRKAWAGAEEVMAQLVDILILSVRNAREWLRKTELRLRDEGVVQEDDYENEVEDFVELRPRRRSRKCAKQRK", "length": 2902, "header": "tr|A0A8W4F9F0-1|F1RRD4_PIG Computationally mapped isoform of Tetratricopeptide repeat and ankyrin repeat containing 1 OS=Sus scrofa OX=9823 GN=TRANK1 PE=4 SV=1 CANONICAL=F1RRD4-1" }, "locus": { "chromosome": "13", "start_pos": 22021788, "end_pos": 21945397, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100401.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100401.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075904.1" } ] } }, { "isoform_ac": "F1RRD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRD4/entry", "sequence": { "sequence": "MDPTTYAELLKESGNQDFKHGNFALAIKKYDEAIRILSQLYQWGVPPRDLAVLLCNKSNAYYSLGKWKEAYMAAKECLQWDPTYMKGYYRAGYSLLRLLQPYEAARMFFDGLELVQGSQDQTQVADFLVGVFTTMGSDPIVLQSFLPCFDHIFSIGFSPEVWQSVIEKLAKKGLWHSFLLLSARKDRLPRNLHVPDLSLKSLFEKYVFIGLYEKMEQVPRLVQWLISVGASVETIGPYPLHALIRLCIRARENHLFRWLMDYKPEWKGRINQKDEDGRTVLHIVAAHSPGYLIKRQTEDVQMLLRFGADPTLLDRQSRSAMDVLKRSKNFKAIEKINSHLGKLAACSKDLSGLSNGEGPASEGEVFQKACEQLVTYMNSGNRLLQKNFLKQEVVQRFLRLLSSLQEIPPDLVYDIDRDCANTFFKFLLEKQKWPEVLLLLTRKVSGEPPLGDCLIKDCDLSNLNLCAILPHLSIWDQRKMQLLGCLIDHGGDLTQGPQDSQERPLTVCLKHKDFELAFLLLTKGADPCCISLTEGDTPLHAALHIFLDIKADIGFNFLSHLLDLFLAKPTEFYYLNPNIQDSLLAKFDINLNLKNKEGKDARHRVKKNDPLLLAWNKALNESRRRGRQDAAAHPAKPLRSTTPAHTAQLKVSSKLLPSGGGGGAARTPPRGAMVPDSWETLPDAQATRPEPGAARPSSQRDRLVQDITALIQQVELDPSLPEDCPQNPEPLETGAGTEGEKDQLQGSSGAGASDLSGNKRVVPEAAEGHTQAGAVSAQVVPAGRKGTENSNDQDDWSVPEIEICLLDFENMTWEIECTSEILKKLSSKVMTKVMKKKIILTIQKLGNGEWTRDLRKRLKNLKGSIQLFEAKLDKGARMLWELAIDFSPRCSENPEKIMAAERSAHPTEKAGRVYTEIIRIWDIVLDHDKLKDSIRAICGAYNRGLSCILRKKLKGINKGQVSANMKIQKRIPRCYVEDTEADQSGAYMEPEYFPPASAVETEYNIMKFHSFSTSMASNILNDTTTTVEYPFRVGELEYAVIDLNPRPLEPIILIGRSGTGKTTCCLYRLWKKFHVYWEKAQQAGSPLLARQIWLKRRLELEPGGEEEEEEEEGSIEVEIVHSDEEQESEACAEGANGEPEAPSQGAEGPAPEQPHQLEHLHQIFVTKNHVLCQEVQRNFTELSKSTKATSHYKSLEPSVHRLQDLKDENFPLFVTSKQLLLLLDASLPEPFFLRNEDGSLKRTIVGWSTQEELSIPNWQEDEEEAEADGDYGEEEKVVETRPCDSDPRVYVTFEVFTSEIWPKMIKGKTSYNPALIWKEIKSFLKGSFEALSSPQGRLTEEAYKQLGRKRSPNFKEDRSEIYGLFCLYQQIRSQKGYFDEEDVLYNLSRRLSKLKVLPWSIHELYGDEIQDFTQAELALLMKCINDPNAMFLTGDTAQSIMKGVAFRFSDLRSLFHYASKNTGDKQCAVRKPKKIHQLYQNYRSHSGILSLASGVVDLLQYYFPESFDRLPRDSGLFDGPRPIVLESCSVSDLAILLRGNKRKTQPIEFGAHQVILVANEMAKEKIPEELGLALVLTVYEAKGLEFDDVLLYNFFTDSEAYKEWKIISSFTPSSESREESRPLMEVPLEKCSSSQGRVLTVNPEMYKLLNGELKQLYTAITRARVNLWIFDENPEKRAPAFKYFMKRNFVQVVKTDENKDLDDSMFVKTSTPAEWIAQGDYYAKHQCWKVAAKCYQKGGAFEKEKLALAHNTALNMKGKKVSPKEKQVEYLELAKTYLECKEPKLSLKCLSYAKEFQLCAQLCERLGKIRDAACFYKRSQRYKDASRCFEQIQEFNLALKMYCQEELFEEAAMAVEKYEEMLRAKTLPISKLSYSASQFYLEAAAKYLSANKMKEMMAVLSKLDTEDQLAFLKSRKRLAEAADLLNREGRREEAALLMKQHGCLLEAARLTADKDFQASCLLAAARLNVARDSDVDHTKTILKEALDLCHQTNQVSGIAEAHFLQGVVLRDFQKLKDAFLKFDTLNHSAGAVEALYEATSRCEAKPEEVLTLAPWGLEVLLNLVRALKRVTNNAEKEMVKSCFEFFGISQVDAKYCQIAQNDPGPILRIIFDLDLNLREKKTKDHFLIMTDQVKLALNKHLLNRLCQITQSLLRKTYPGVCTRFIVGLKCEDGNCEDFHRPLRRHEAKCLVQSKIHLVAINGLLLEAKKVFPKVLAEELEELDYILPSNKYGLCRSFLDVLFPKHFHQRVLSENPMACKEVLKPHYKSFKFYRSALKEYIHFLFQNERARSRRESTDLWLSAMQAFLLSSSYPDELEKLLHQEEDSYNRELKALQAEKEDRGQGRGSRIKGIEGKFGMLAPNKDDESAEKTHLCFIRLLEDSIHQFYVCRNPEDHKRRFFRFMNVLVKRCKEPLIPSIGNTVALLEFQFIHCGAVLARLRRNSILCLPKSYIALLHYWEFLFSKKDREPGDVFAIIQEYRPKDVNRAIQDFRFHLSYLVKVLCGGENENFNVLLDAFSDIDYVVSGEAERTLVLCLVMLVNAGEVLQPSCKPLLSRHFQEIEARLQLMSLECPGQVPDRLLRAMKRVLLAVNVKSVAEALQDLLFERDEEYLMDCHWRWDSGHTKGTVVRGLYHEEVRLNRLLSVDPVGHLADTECEFGEDESEELALEDRDHLLAAILSQKQRKASIQRKLRRACLVVSLCVSWRRRAGAQTEHSREEGREPGAGNFKKADVDRTQCDLCGVKFTRGPENYFGPDQAFEEAASEADALSRAELEDEDGQEKNSESYEQHIRLEDHQRQQRAYQKYSEFFHEKVEPAIGEGKLVVQDIEQSVWVRSHLGSKEHSHVLQRKVQENIKKVLDTVEDLYRRKAWAGAEEVMAQLVDILILSVRNAREWLRKTELRLRDEGVVQEDDYENEVEDFVELRPRRRSRKCAKQRK", 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microtubule associated protein 1B OS=Sus scrofa OX=9823 GN=CIMAP1B PE=4 SV=1 CANONICAL=F1RXT6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R6K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6K4/entry", "sequence": { "sequence": "MGSDVWVGPWRPHRPRGPIAALYSGPGPKYKLPPNTGRYFPERAGNVAYPSAPRHTIAPRNWGLRAEPQTPGPGTYTVPSLLGPRVVGKVSAPTYSIYGRSAVGSFCEDLSKTPGPCAYHVVNPGIYKPRAPQFSMLARTSLPRGNTLNPGPAAYNVDQPRKPRGWSFGIRHSDYLAPMVFDVDD", "length": 185, "header": "tr|A0A5G2R6K4-1|F1RXT6_PIG Computationally mapped isoform of Ciliary microtubule associated protein 1B OS=Sus scrofa OX=9823 GN=CIMAP1B PE=4 SV=1 CANONICAL=F1RXT6-1" }, "locus": { "chromosome": "5", "start_pos": 217919, "end_pos": 216498, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082459.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082459.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072709.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072709.1" } ] } }, { "isoform_ac": "F1RXT6-1", 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genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6K4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6K4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517096", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517096", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KQA5-1", "protein_name": "Ciliary microtubule associated protein 1B", "gene_name": "cimap1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSPVDVWVGSWRPHKPRGPIAAMYNSPGPTYALPGATGMNNHDPRMQKGPAFSFGIRHHNFHGNYSPGPGYLVPSNITRVGRDGTPAYSVYGRRKDIQPFQTPGPGSYSPENATKATYLSPPAFTLSARTKLFRNDQTPGPAAYMLPPVLGPKVVNKTSAPNVSFSGRSAIGSFHEDLRKTPGPGTYQVVDPCVYKHKGPQYSMTGRNMMPGDMTKKPGPGAHYPEMVCFTRAKAPSFSFGIRHSEYVAPTIVDGED", "length": 257 }, "evidence": [ { "id": "F1RXT6", "url": "https://omabrowser.org/oma/group/F1RXT6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8MYP8-1", "protein_name": "Ciliary microtubule associated protein 1B", "gene_name": "CIMAP1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RXT6", "url": "https://www.uniprot.org/uniprotkb/F1RXT6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": 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"total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S253-1", "uniprot_ac": "F1S253", "uniprot_id": "F1S253_PIG", "mass": { "chemical_mass": 35486.0, "monoisotopic_mass": 35486.0 }, "refseq": { "ac": "XP_005663199", "name": "cell surface A33 antigen", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663199" }, "gene_names": [ { "name": "GPA33", "type": "recommended", "evidence": [ { "id": "F1S253", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S253" } ] }, { "name": "GPA33", "type": "synonym", "evidence": [ { "id": "XP_005663199", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663199" } ] } ], "protein_names": [ { "name": "Cell surface A33 antigen", "type": "recommended", "evidence": [ { "id": "F1S253", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S253/entry#names_and_taxonomy" } ] }, { 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"UniProtKB", "id": "F1S253", "url": "https://www.uniprot.org/uniprotkb/F1S253" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPA33", "url": "https://www.uniprot.org/uniprotkb/F1S253", "locus": { "chromosome": "4", "start_pos": 83941563, "end_pos": 83904915, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006312", "url": "https://www.ensembl.org/id/ENSSSCG00000006312" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006312", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006312", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102163953", "url": "https://www.ncbi.nlm.nih.gov/gene/102163953", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042474", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042474", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102163953", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102163953", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEMSGYY", "url": "https://omabrowser.org/oma/group/TEMSGYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S253", "url": "https://www.orthodb.org/?gene=F1S253", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44969:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44969:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663199", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663199", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R872", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R872", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R872-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R872-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S253", "url": "https://www.uniprot.org/uniprotkb/F1S253", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S253-1", "url": "https://www.uniprot.org/uniprotkb/F1S253-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGKMQPVLWMLCAVWVTVHAISVETPKDVLRAARGESVTLPCTYQTSSLNREGFIQWDKLLRSHTERVITWIFTTKNYIYGDLYLNRVNLSVQVDRSDASVTIDKLTMDDNGTYECSVSLMSDMEGTSKSRVRLLVLVPPSNPDCGIQGETVIGNDIQLTCESKEGSPAPQYSWKSYDVLNQERHQVTPVTGQIFSLKNISTEMSGYYVCTSSNEVGIRSCNITLAVRPPSMNVALYAGIAGGVAAALIIIGVIVYCCCCRETSKAEDAEVARPNRAAYQEPPEQMIELSRERQEEGEDGYRDEDPSDPDQESPDQAGQ", "length": 320, "header": "tr|F1S253-1|F1S253_PIG Isoform 1 of Cell surface A33 antigen OS=Sus scrofa OX=9823 GN=GPA33 PE=1 SV=2 CANONICAL=F1S253-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R872-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R872/entry", "sequence": { "sequence": "KDVLRAARGESVTLPCTYQTSSLNREGFIQWDKLLRSHTERVITWIFTTKNYIYGDLYLNRVNLSVQVDRSDASVTIDKLTMDDNGTYECSVSLMSDMEGTSKSRVRLLVLVPPSNPDCGIQGETVIGNDIQLTCESKEGSPAPQYSWKSYDVLNQERHQVTPVTGQIFSLKNISTEMSGYYVCTSSNEVGIRSCNITLAVRPPSMNVALYAGIAGGVAAALIIIGVIVYCCCCRETSKAEDAEVARPNRAAYQEPPEQMIELSRERQEEGEDGYRDEDPSDPDQESPDQAGQ", "length": 293, "header": "tr|A0A5G2R872-1|F1S253_PIG Computationally mapped isoform of Cell surface A33 antigen OS=Sus scrofa OX=9823 GN=GPA33 PE=1 SV=1 CANONICAL=F1S253-1" }, "locus": { "chromosome": "4", "start_pos": 83940068, "end_pos": 83917125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078008.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078008.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070317.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070317.1" } ] } }, { "isoform_ac": "F1S253-1", "url": "https://www.uniprot.org/uniprotkb/F1S253/entry", "sequence": { "sequence": "MEGKMQPVLWMLCAVWVTVHAISVETPKDVLRAARGESVTLPCTYQTSSLNREGFIQWDKLLRSHTERVITWIFTTKNYIYGDLYLNRVNLSVQVDRSDASVTIDKLTMDDNGTYECSVSLMSDMEGTSKSRVRLLVLVPPSNPDCGIQGETVIGNDIQLTCESKEGSPAPQYSWKSYDVLNQERHQVTPVTGQIFSLKNISTEMSGYYVCTSSNEVGIRSCNITLAVRPPSMNVALYAGIAGGVAAALIIIGVIVYCCCCRETSKAEDAEVARPNRAAYQEPPEQMIELSRERQEEGEDGYRDEDPSDPDQESPDQAGQ", "length": 320, "header": "tr|F1S253-1|F1S253_PIG Isoform 1 of Cell surface A33 antigen OS=Sus scrofa OX=9823 GN=GPA33 PE=1 SV=2 CANONICAL=F1S253-1" }, "locus": { "chromosome": "4", "start_pos": 83940068, "end_pos": 83904975, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006919.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006919.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006731.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006731.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R872", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R872" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102163953", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102163953", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XYU4-1", "protein_name": "Glycoprotein A33", "gene_name": "GPA33", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTHIKLSVKATLWGTSHCSVRLTATASFLLNGRPQIGHFLVTAYALTVETPIKKVEVARGNNATLRCNFNTNTFTNIGDFVVWKKITSADDAVTRYFDGLVQYGKSYENRIQFIGDVNSGDVSITIREVTMEDNGTYVCSVRLRDDPPRQSALTSLFVLIAPSKPECKIVGTAEYGQTINLTCFSHEGSPKPTYTWQSFSVQNEPRVLQTTKGEQITLKNISADTSGFYICTSTNSVGTEFCNMTVSVVPPSMNIALYAGIAGGVLAAVIVIGILAYCCCCRESKDYEETAREDEGEHTQNIPMDTQRAKDAPEDE", "length": 316 }, "evidence": [ { "id": "F1S253", "url": "https://omabrowser.org/oma/group/F1S253/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZRJ6-1", "protein_name": "Cell surface A33 antigen", "gene_name": "Gpa33", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGTVGPVLWMFCAIWVAADAITVETTQDVLRAARGKSVTLPCIYSTPVSDRQGFIQWDKLLRSQTEKVATWTFETKKYTYGSRYENRVRISNDAELSNASITIDQLTMDDNGTYECSVSLMSDQDVTSRSRVRLLVLVPPSKPDCGIEGETVIGNNIQLTCHSAEGSPSPQYSWKSYNAQNQQRPLAQPVSGEPLLLKNISADTAGYYICTSSNDVGTEFCNITVAPRPPSMNIALYAGIAGGVFVALIIIGVIVYCCCCREKDDKAQEMETVRPDRAAYQEPKNQRTEISREWEDEDDRRHEDQRSSGRGSPDQPFQ", "length": 319 }, "evidence": [ { "id": "F1S253", "url": "https://omabrowser.org/oma/group/F1S253/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MHQ1-1", "protein_name": "Cell surface A33 antigen", "gene_name": "GPA33", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGKIQPVLWVLCAVWVTVHGIFVETPKDVLRAARGKNVTLPCSYQTSSPNREGFIQWDKLLRSHTERVLIWAFLTKEYVYGELYQNRARISNNAEQSDASITIDQLTMDDNGTYECSVLLTSDLGGVSKSRAYLLVLVPPSKPDCGIQGETVIGNDIQLTCQSKEGSPAPQYSWKSYDVLHQERQVTPVTGQTFSLKNISTEMSGYYICISRNEVGTESCNITVAVRSPSMNVALYAGVAGGVAAALVIIGIILYCCCCRDTGKAEDAEVARPNRAAYREPPEQLTELSRRQEEEGEDDYRHEDQRHAGRETPDQAGR", "length": 319 }, "evidence": [ { "id": "F1S253", "url": "https://omabrowser.org/oma/group/F1S253/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99795-1", "protein_name": "Cell surface A33 antigen", "gene_name": "GPA33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVGKMWPVLWTLCAVRVTVDAISVETPQDVLRASQGKSVTLPCTYHTSTSSREGLIQWDKLLLTHTERVVIWPFSNKNYIHGELYKNRVSISNNAEQSDASITIDQLTMADNGTYECSVSLMSDLEGNTKSRVRLLVLVPPSKPECGIEGETIIGNNIQLTCQSKEGSPTPQYSWKRYNILNQEQPLAQPASGQPVSLKNISTDTSGYYICTSSNEEGTQFCNITVAVRSPSMNVALYVGIAVGVVAALIIIGIIIYCCCCRGKDDNTEDKEDARPNREAYEEPPEQLRELSREREEEDDYRQEEQRSTGRESPDHLDQ", "length": 319 }, "evidence": [ { "id": "F1S253", "url": "https://omabrowser.org/oma/group/F1S253/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JKA5-1", "protein_name": "Cell surface A33 antigen", "gene_name": "Gpa33", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLGKAGSVVWMLCAIWVAADALTVETTQDILRAARGRSVTLPCTYNTYVSDREGFIQWDKLLRSQTERVVTWNFVTKKYIYGNRYENRVRVSNDAELSNASITIDQLTMDDNGTYECSVSLMSDQDVNAKSRVRLLVLVPPSKPDCSIQGEMVIGNNIQLTCHSAEGSPSPQYSWKSYNAQNQQRPLTQPVSGEPLLLKNISTETAGYYICTSSNDVGIESCNITVAPRPPSMNIALYAGIAGGVFVALIIIGVIVYCCCCREKDDKDQDREDARPNRAAYQVPKKEQKEISRGREDEDDHRHEDRWSSGRSTPDQPFQ", "length": 319 }, "evidence": [ { "id": "F1S253", "url": "https://omabrowser.org/oma/group/F1S253/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S253", "url": "https://www.uniprot.org/uniprotkb/F1S253" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S253", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S253" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 134, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 200, "end_pos": 202 }, { "start_pos": 223, "end_pos": 225 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RS42-1", "uniprot_ac": "F1RS42", "uniprot_id": "F1RS42_PIG", "mass": { "chemical_mass": 126731.0, "monoisotopic_mass": 126731.0 }, "refseq": { "ac": "XP_020927120", "name": "serine/threonine-protein kinase Nek10 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927120" }, "gene_names": [ { "name": "NEK10", "type": "recommended", "evidence": [ { "id": "F1RS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ] }, { "name": "NEK10", "type": "synonym", "evidence": [ { "id": "XP_020927120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927120" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein kinase Nek10", "type": "recommended", "evidence": [ { "id": "F1RS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS42/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1RS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS42/entry#names_and_taxonomy" } ] }, { "name": "Never in mitosis A-related kinase 10", "type": "synonym", "evidence": [ { "id": "F1RS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS42/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein kinase Nek10 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_020927120", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927120" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NEK10", "url": "https://www.uniprot.org/uniprotkb/F1RS42", "locus": { "chromosome": "13", "start_pos": 13752467, "end_pos": 13930483, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011217", "url": "https://www.ensembl.org/id/ENSSSCG00000011217" } ] } } ], "crossref": [ { "id": "F1RS42", "url": "https://alphafold.ebi.ac.uk/entry/F1RS42", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011217", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011217", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08528", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08528", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100622627", "url": "https://www.ncbi.nlm.nih.gov/gene/100622627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VCLQLIP", "url": "https://omabrowser.org/oma/group/VCLQLIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43671:SF92", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43671:SF92", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020927120", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927120", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R8H9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS42-1", "url": "https://www.uniprot.org/uniprotkb/F1RS42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPDQDKKVKTTEKSTEKKQQGTTTRDYSDLKRLRCLLNVQSSKQQLPAIHFDSTQNSMMKSEPTIRGGAHRVRGQWHESTEAVELENFSINYKNERNFSKHPQHKLFEEIFIALVKNRLICREWVDRAPSLHFLRVLICLRLLMRDPCYQEILHSLGGIENLAQYMEIVAHGYLGYGEAQHSVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLSARDTSVLLGALLALASLAESPECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAERQVKEQVKLYEGVPVLLSLLHSDHLKLLWSVVWILVQVCEDPETSVEIRIWGGIKQLLHILRGDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAQQVVQENGVYTIAKLILPNKQKNAANTHLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISAYEELVSKLNVLVEDELKQIAENIESINQNKAPSKYIGNYAILDHLGSGAFGCVYKVRKLSGQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKQHHFAEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDRVTVTDFGLAKQKQESSKLTSVVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLNPPFYSTNMLSLATKIVEAAYDPVPEGIYSEKVTTTISRCLTPDAEARPDIVEVSSMISDVMMKYLDNLSTSQLALERKLDRERRRTQRYFMEANRNAVTCHRELAMLPHETFEKASLSSSSSGAGSLKSELSESVELPPEAFQAPCVKDEDQACDGILSDDNFNLESVEKDIYSELDDELDISDNSSSSSSSPLKESTFSTLKRSFSASGGERQSQIRDFAGGIGSRPRPASAGIAVSQRKVRQISDPIQQILIQLHKVIYITQLPPALHHNLKRRVVERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIEPNFFTADYHLLHRASGDHSLSPSDPTGLPSSFDLEEGITYEQMQTVIEEVLEESGYYNFTSNRYHSYPWGTKNHPTKR", "length": 1116, "header": "tr|F1RS42-1|F1RS42_PIG Isoform 1 of Serine/threonine-protein kinase Nek10 OS=Sus scrofa OX=9823 GN=NEK10 PE=3 SV=3 CANONICAL=F1RS42-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R8H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8H9/entry", "sequence": { "sequence": "MPDQDKKVKTTEKSTEKKQQGTTTRDYSDLKRLRCLLNVQSSKQQLPAIHFDSTQNSMMKSEPTIRGGAHRVRGQWHESTEAVELENFSINYKNERNFSKHPQHKLFEEIFIALVKNRLICREWVDRAPSLHFLRVLICLRLLMRDPCYQYMEIVAHGYLGYGEAQHSVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLSARDTSVLLGALLALASLAESPECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAERQVKEQVKLYEGVPVLLSLLHSDHLKLLWSVVWILVQVCEDPETSVEIRIWGGIKQLLHILRGDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAQQVVQENGVYTIAKLILPNKQKNAANTHLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISAYEELVSKLNVLVEDELKQIAENIESINQNKAPSKYIGNYAILDHLGSGAFGCVYKVRKLSGQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKQHHFAEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDRVTVTDFGLAKQKQESSKLTSVVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLNPPFYSTNMLSLATKIVEAAYDPVPEGIYSEKVTTTISRCLTPDAEARPDIVEVSSMISDVMMKYLDNLSTSQLALERKLDRERRRTQRYFMEANRNAVTCHRELAMLPHETFEKASLSSSSSGAGSLKSELSESVELPPEAFQAPCVKDEDQACDGILSDDNFNLESVEKDIYSELDDELDISDNSSSSSSSPLKESTFSTLKRSFSASGGERQSQIRDFAGGIGSRPRPG", "length": 944, "header": "tr|A0A5G2R8H9-1|F1RS42_PIG Computationally mapped isoform of Serine/threonine-protein kinase Nek10 OS=Sus scrofa OX=9823 GN=NEK10 PE=3 SV=1 CANONICAL=F1RS42-1" }, "locus": { "chromosome": "13", "start_pos": 13911730, "end_pos": 13795469, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069983.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069983.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070427.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070427.1" } ] } }, { "isoform_ac": "F1RS42-1", "url": "https://www.uniprot.org/uniprotkb/F1RS42/entry", "sequence": { "sequence": "MPDQDKKVKTTEKSTEKKQQGTTTRDYSDLKRLRCLLNVQSSKQQLPAIHFDSTQNSMMKSEPTIRGGAHRVRGQWHESTEAVELENFSINYKNERNFSKHPQHKLFEEIFIALVKNRLICREWVDRAPSLHFLRVLICLRLLMRDPCYQEILHSLGGIENLAQYMEIVAHGYLGYGEAQHSVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLSARDTSVLLGALLALASLAESPECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAERQVKEQVKLYEGVPVLLSLLHSDHLKLLWSVVWILVQVCEDPETSVEIRIWGGIKQLLHILRGDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAQQVVQENGVYTIAKLILPNKQKNAANTHLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISAYEELVSKLNVLVEDELKQIAENIESINQNKAPSKYIGNYAILDHLGSGAFGCVYKVRKLSGQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKQHHFAEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDRVTVTDFGLAKQKQESSKLTSVVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLNPPFYSTNMLSLATKIVEAAYDPVPEGIYSEKVTTTISRCLTPDAEARPDIVEVSSMISDVMMKYLDNLSTSQLALERKLDRERRRTQRYFMEANRNAVTCHRELAMLPHETFEKASLSSSSSGAGSLKSELSESVELPPEAFQAPCVKDEDQACDGILSDDNFNLESVEKDIYSELDDELDISDNSSSSSSSPLKESTFSTLKRSFSASGGERQSQIRDFAGGIGSRPRPASAGIAVSQRKVRQISDPIQQILIQLHKVIYITQLPPALHHNLKRRVVERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIEPNFFTADYHLLHRASGDHSLSPSDPTGLPSSFDLEEGITYEQMQTVIEEVLEESGYYNFTSNRYHSYPWGTKNHPTKR", "length": 1116, "header": "tr|F1RS42-1|F1RS42_PIG Isoform 1 of Serine/threonine-protein kinase Nek10 OS=Sus scrofa OX=9823 GN=NEK10 PE=3 SV=3 CANONICAL=F1RS42-1" }, "locus": { "chromosome": "13", "start_pos": 13911730, "end_pos": 13753374, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012283.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012283.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011966.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011966.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8H9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8H9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N210-1", "protein_name": "Serine/threonine-protein kinase Nek10", "gene_name": "Nek10", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPDQDKKVKPTEKSADKKQQGTTSRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNSMIKCETAIKAGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQHQLFQEIFTALVRNRLICREWVNRAPSIHFLRVLICLRLLMRDPCYQEILHKLGGIEDLAQYMETVANEYLGYAEEQHCVDKLVNMTNIFQKLAAVKDQREWVTASGAHKTLVNLLGARDTNVLLGTLLALASLAESPECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAEPQVKEQVKLYEGIPILLSLLHSDHLKLLWSVVWILVQVCEDPETSVEIRIWGGIKQLLHILRGDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPGEIQENTVSLQAACCAALTELALNDANAHQVVQENGVYTIAKLILPTKQKNAAKTNLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISAYEDLVSQLNLLLEDELKQIAENIESINQKKAPLKYIGDYAVLDHLGSGAFGCVYKVRKRSGQNLLAMKEVNLHNPAFGKDKKDRDSSVKNIVSELTIIKEQLYHPNIVRYYRTFLENDRLYIVMELIEGAPLAEHFSSLKEKQQHFSEERLWRIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQKHESSKLTSMVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLSPPFCSTNMLSLATKIVEAVYEPVPEGIYSEKVADTISRCLTPDAEARPDIVEVSSMISDVMMKYLDNLSTSQLALEKKLERERRRTQRYFMEANRNAVTCHHELALLSQETFEKASLSSSSSGAASLKSELSESAELPGEAFHTMQCGKEEDRTCEEVLSEDNFHLESVEKDLYSELDDELDILDNCSSSSSSPLKESTFSILKRSFSASGRERHSQARDFIGGIGSRPRPASAGIAVSQRKVRQISDPIQQILIQLHKVIYITQLPPALHHDLKRRVIERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIEPNFFTSDYHLLHHSLSANNWSQSDPTGPPSSLELEEGLTYEQMQTVIEEVLEESGYYNFATNRCHSYPWGTKNYPTKR", "length": 1117 }, "evidence": [ { "id": "F1RS42", "url": "https://omabrowser.org/oma/group/F1RS42/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0L6W2-1", "protein_name": "Serine/threonine-protein kinase Nek10", "gene_name": "Nek10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPDQDTKVKSIEKATDKKQQGTTTRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQSNMSKSDPTIKTGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQHQLFQEIFTALVRNRLICREWVNRAPSIHFLRVLICLRLLMRDPCYQEILHKLGGIEDLAQYMEIVANEYLGYAEEQHCVDKLVNMTYIFQKLAAVKDQREWVTSSGAHKTLVNLLGARDTNVLLGTLLALASLAESPECREKISELNVVENLLMILHEYDLLSKRLTAELLRLLCAEPPVKEQVKLYEGIPILLSLLHSDHLKLLWSVVWILVQVCEDPETSVEIRIWGGIKQLLHILQGILCGNISEHLKRLQRDEQHASLVISATGKTKEKDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPGEIQENTVSLQAACCAALTELALNDTNAHQVVQENGVYTIAKLILPNKQSNAAKTNLLQCYAFRTLRFLFSMERNRPLFKRLFPTDLFETFIDIGHYVRDIGAYADLVSQLNLLLEDELKQIAENIESINQKKAPLKYIGDYALLDHLGSGAFGCVYKVRKRSGQNLLAMKEVNLHNPAFGKDKKDRDSSVKNIVSELTIIKEQLYHPNVVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKQQHFSEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQKQESSKLTSVVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLNPPFCSTNMLSLATKIVEAVYEPVPEGIYSEKVTETIRRCLTPDAEARPDIVEVSSMISDIMMKYLDSLSTSQLALERKLERERRRTQRYFMEANRNAVMCHHELSLLSQETFEKASLSSSSSGAASLKSELSESAELPGEGCHIPCGKEEDRGCEEELSEDNFQLESVEKDLYSELDEELDVSDNCSSSSSSPLKESTFSILKRSFSASGRERHSQARDFIGGLGSRPRPASAGIAVSQRKVRQICDPIQQILIQLHKVIYITQLPPALHHDLKRRVIERFKKSLFSQQSNPCNLKSEIRKLSQGSPEPIEPNFLTSDYHLLRHSSTAKNWSPSDPTGPSSGLEVEEGITYEQMQTVIEEVLEESGYYNFTTNRSSRCHSYPWGTKSYTAKR", "length": 1152 }, "evidence": [ { "id": "F1RS42", "url": "https://omabrowser.org/oma/group/F1RS42/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UGM2-1", "protein_name": "Serine/threonine-protein kinase Nek10", "gene_name": "Nek10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPDQDTKAKSTEKTADKQQGTTTRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNNMTKSEPTIRTGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQHQLFQEIFTALVRNRLICREWVNRAPSIHFLRVLICLRLLMRDPCYQEILHKLGGIEDLAQYMEIVANEYLGYAEEQHCVDKLVNMTYIFQKLAAVKDQREWVTASGAHKTLVSLLGARDTTVLLGALLALASLAESSECREKISELNVVENLLMILHEYDLLSKRLTAELLRLLCAEPQIKEQVKLYEGIPILLSLLHSDHLKLLWSVIWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSDRSSIGSLSSANAAGRIQQLHLSEDLSPGEIEENTVSLQAACCAALTELALNDTNAHQVVQENGVYTIAKLILPNKQSNAAQTNLLQCYAFRTLRFLFSMERNRPLFKRLFPTDLFETFIDIGHYVRDIGAYKDLVSQLNLLLEDELKQIAENIESINQKKAPLKYIGDYAVLDHLGSGAFGCVYKVRKRSGQNLLAMKEVNLHNPAFGKDKKDRDSSVKNIVSELTIIKEQLYHPNVVRYYKTFLENDRLYIVMELIEGAPLGEHFNSLKEKHHHFSEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQKQESSKLTSMVGTILYSCPEVLKSEPYGEKADVWAAGCILYQMATLSPPFCSTNMLSLATKIVEAVYEPVPEGIYSEKVTDTIRRCLTPDAEARPDIVEVSSMISDVMMKYLDRLSTSQLALERKLERERRRTQRYFMEANRNAVTCHHELALLSQETFEKASLSSSSSGAASLKSELSESAELPGEGCHIPCGKEEDRVCEEVLSEDNFQLESVEKDLYSELDDELDVSDNCSSSSSSPLKESTFSILKRSFSASGRERHSQARDFIAGLGSRPRPGPQMSTFVVESASAGIAVSQRKVRQICDPIQQILIQLHKVIYITQLPPALHHDLKRRVIERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIELNFLTSDYHSLRHSRAANNWSPSDPTGSPSSFEVEEGVTYEQMQTVIEEVLEESGYYNFTTKR", "length": 1111 }, "evidence": [ { "id": "F1RS42", "url": "https://omabrowser.org/oma/group/F1RS42/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWH5-1", "protein_name": "Serine/threonine-protein kinase Nek10", "gene_name": "NEK10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPDQDKKVKTTEKSTDKQQEITIRDYSDLKRLRCLLNVQSSKQQLPAINFDSAQNSMTKSEPAIRAGGHRARGQWHESTEAVELENFSINYKNERNFSKHPQRKLFQEIFTALVKNRLISREWVNRAPSIHFLRVLICLRLLMRDPCYQEILHSLGGIENLAQYMEIVANEYLGYGEEQHTVDKLVNMTYIFQKLAAVKDQREWVTTSGAHKTLVNLLGARDTNVLLGSLLALASLAESQECREKISELNIVENLLMILHEYDLLSKRLTAELLRLLCAEPQVKEQVKLYEGIPVLLSLLHSDHLKLLWSIVWILVQVCEDPETSVEIRIWGGIKQLLHILQGDRNFVSDHSSIGSLSSANAAGRIQQLHLSEDLSPREIQENTFSLQAACCAALTELVLNDTNAHQVVQENGVYTIAKLILPNKQKNAAKSNLLQCYAFRALRFLFSMERNRPLFKRLFPTDLFEIFIDIGHYVRDISAYEELVSKLNLLVEDELKQIAENIESINQNKAPLKYIGNYAILDHLGSGAFGCVYKVRKHSGQNLLAMKEVNLHNPAFGKDKKDRDSSVRNIVSELTIIKEQLYHPNIVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKHHHFTEERLWKIFIQLCLALRYLHKEKRIVHRDLTPNNIMLGDKDKVTVTDFGLAKQKQENSKLTSVVGTILYSCPEVLKSEPYGEKADVWAVGCILYQMATLSPPFYSTNMLSLATKIVEAVYEPVPEGIYSEKVTDTISRCLTPDAEARPDIVEVSSMISDVMMKYLDNLSTSQLSLEKKLERERRRTQRYFMEANRNTVTCHHELAVLSHETFEKASLSSSSSGAASLKSELSESADLPPEGFQASYGKDEDRACDEILSDDNFNLENAEKDTYSEVDDELDISDNSSSSSSSPLKESTFNILKRSFSASGGERQSQTRDFTGGTGSRPRPALLPLDLLLKVPPHMLRAHIKEIEAELVTGWQSHSLPAVILRNLKDHGPQMGTFLWQASAGIAVSQRKVRQISDPIQQILIQLHKIIYITQLPPALHHNLKRRVIERFKKSLFSQQSNPCNLKSEIKKLSQGSPEPIEPNFFTADYHLLHRSSGGNSLSPNDPTGLPTSIELEEGITYEQMQTVIEEVLEESGYYNFTSNRYHSYPWGTKNHPTKR", "length": 1172 }, "evidence": [ { "id": "F1RS42", "url": "https://omabrowser.org/oma/group/F1RS42/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of cell cycle G2/M phase transition", "id": "GO:1902749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902749", "evidence": [ { "database": "UniProtKB", "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "protein kinase complex", "id": "GO:1902911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902911", "evidence": [ { "database": "UniProtKB", "id": "F1RS42", "url": "https://www.uniprot.org/uniprotkb/F1RS42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1096, "end_pos": 1098, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, 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] } ], "sequence": { "sequence": "MSILQRLRQMDIRKGVVSLATGAGAIYLLYKAIRAGIRCKPPLCSASPICIARKCPRPGERALLGVPTPQASGVGGPKGLAIERERHGRDSGELRRLLTSLECKQDEYAKSMILHSITRCVYLLESEASACTNEDIALVGSMLDDKDNSVKIQALNTLKAFSGIRKFRLKIQEHSIKVLELISTIWDSELHISGLRLLNNLPLPDFVHPQLRRVMPALMEILQSDYILAQVQAVRLLSNLAQKNDLLYDILNCQVHSNFLNLFQSTQPGSLLFEVLVFAERLSEGRSSPHYRAVKWHYNQQSVHEALFGDDSRLADRLLALVIHPEEDVQIQACKVIVSLQCPQDVGVRPSCPPSHSCFNPGE", "length": 363, "header": "tr|F1RYX9-1|F1RYX9_PIG Isoform 1 of Armadillo repeat containing 12 OS=Sus scrofa OX=9823 GN=ARMC12 PE=4 SV=3 CANONICAL=F1RYX9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R8W7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8W7/entry", "sequence": { "sequence": 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"MSILQRLRQMDIRKGVVSLATGAGAIYLLYKAIRAGIRCKPPLCSASPICIARLAIERERHGRDSGELRRLLTSLECKQDEYAKSMILHSITRCVYLLDDKDNSVKIQALNTLKAFSGIRKFRLKIQEHSIKVLELISTIWDSELHISGLRLLNNLPLPDFVHPQLRRVMPALMEILQSDYILAQVQAVRLLSNLAQKNDLLYDILNCQVHSNFLNLFQSTQPGSLLFEVLVFAERLSEGRSSPHYRAVKWHYNQQSVHEALFGDDSRLADRLLALVIHPEEDVQIQACKVIVSLQCPQDVGVRPSCPPSHSCFNPGE", "length": 318, "header": "tr|A0A8W4FE17-1|F1RYX9_PIG Computationally mapped isoform of Armadillo repeat containing 12 OS=Sus scrofa OX=9823 GN=ARMC12 PE=4 SV=1 CANONICAL=F1RYX9-1" }, "locus": { "chromosome": "7", "start_pos": 31601770, "end_pos": 31590962, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101742.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101742.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077554.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077554.1" } ] } }, { "isoform_ac": "F1RYX9-1", "url": "https://www.uniprot.org/uniprotkb/F1RYX9/entry", "sequence": { "sequence": 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of compounds" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RWY7", "url": "https://www.uniprot.org/uniprotkb/F1RWY7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "xenobiotic metabolic process", "id": "GO:0006805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006805", "evidence": [ { "database": "UniProtKB", "id": "F1RWY7", "url": "https://www.uniprot.org/uniprotkb/F1RWY7" } ], "pmid": "" }, { "name": "homocysteine metabolic process", "id": "GO:0050667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050667", "evidence": [ { "database": "UniProtKB", "id": "F1RWY7", "url": "https://www.uniprot.org/uniprotkb/F1RWY7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine hydrolase 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Expression" ] }, { "id": "100154780", "url": "https://www.ncbi.nlm.nih.gov/gene/100154780", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154780", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154780", "database": 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"R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927723", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927723", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA45-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZV9", "url": "https://www.uniprot.org/uniprotkb/F1RZV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZV9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZV9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFHCIPLWRCNRHVETIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESISFCKALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLEMLPDGIGKLKKLSILKVDQNRLTQLPEAIGDCESLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQATELHVLDVAGNRLLHLPLSLTTLKLKALWLSDNQSQPLLTFQTDTDHTTGEKILTCVLLPQLPSEPACQENLPRCGALESLVNEVSDEAWNERAVNRVSAIRFLEDEKDEDDNETRTLLRRATPHPGELKHMKKTVENLRNDRNAARGLDSNKNEVNHAMDRVTTSV", "length": 524, "header": "tr|F1RZV9-1|F1RZV9_PIG Isoform 1 of Leucine-rich repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=LRRC1 PE=1 SV=3 CANONICAL=F1RZV9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RA45-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA45/entry", "sequence": { "sequence": "MFHCIPLWRCNRHVETIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESISFCKALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNISAFSLRAPSLCFFFNSSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLEMLPDGIGKLKKLSILKVDQNRLTQLPEAIGDCESLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQATELHVLDVAGNRLLHLPLSLTTLKLKALWLSDNQSQPLLTFQTDTDHTTGEKILTCVLLPQLPSEPACQENLPRCGALESLVNEVSDEAWNERAVNRVSAIRFLEDEKDEDDNETRTLLRRATPHPGELKHMKKTVENLRNDRNAARGLDSNKNEVNHAMDRVTTSV", "length": 522, "header": "tr|A0A5G2RA45-1|F1RZV9_PIG Computationally mapped isoform of Leucine-rich repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=LRRC1 PE=1 SV=1 CANONICAL=F1RZV9-1" }, "locus": { "chromosome": "7", "start_pos": 26989499, "end_pos": 26861532, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089956.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089956.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071005.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071005.1" } ] } }, { "isoform_ac": "F1RZV9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZV9/entry", "sequence": { "sequence": "MFHCIPLWRCNRHVETIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESISFCKALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLEMLPDGIGKLKKLSILKVDQNRLTQLPEAIGDCESLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQATELHVLDVAGNRLLHLPLSLTTLKLKALWLSDNQSQPLLTFQTDTDHTTGEKILTCVLLPQLPSEPACQENLPRCGALESLVNEVSDEAWNERAVNRVSAIRFLEDEKDEDDNETRTLLRRATPHPGELKHMKKTVENLRNDRNAARGLDSNKNEVNHAMDRVTTSV", "length": 524, "header": "tr|F1RZV9-1|F1RZV9_PIG Isoform 1 of Leucine-rich repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=LRRC1 PE=1 SV=3 CANONICAL=F1RZV9-1" }, "locus": { "chromosome": "7", "start_pos": 26989499, "end_pos": 26861532, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001658.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001658.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001616.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001616.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RA45", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA45" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154780", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154780", "resource": "KEGG Pathway" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LTV0-1", "protein_name": "Leucine-rich repeat-containing protein 1", "gene_name": "LRRC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFHCIPLWRCNRHVETIDRRHCSLLYVPDEVYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESISFCKALQIADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLEMLPDGIGKLKKLSILKVDQNRLTQLPEAVGDCESLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSRAAELHVLDVAGNRLSHLPLSLTALNLKALWLSDNQAQPLLTFQTDTDHTTGEKILTCVLLPQLPSEPACQENLPRCGALESLVHDVSEEAWNERAVNRVSAIRFLDDEKDDDDNETRTLLRRATPHPGELKSMKKTVENLRNDRNAAKGLDSNKNEVNHAVDRVTTSV", "length": 524 }, "evidence": [ { "id": "F1RZV9", "url": "https://omabrowser.org/oma/group/F1RZV9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V6R4-1", "protein_name": "Leucine-rich repeat-containing protein 1", "gene_name": "Lrrc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPSARRPRVGSGARRRGRWEGTLRLWRRRGTRRGFPRLPQNVRNRGALARRERAWGQQRVRSGRRAGSSGAAGRSGLRAPGSAARRDTTLVLEAAMFHCIPLWRCNRHVEAIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESISFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYSLPESIGALLHLKDLWLDGNQLSELPQEIGNLRNLLCLDVSENRLERLPEEISGLISLTDLVVSQNLLETVPDGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLTENRLLTLPTSIGKLKKLNNLNADRNKLVSLPKEIGGCCSLTVFCIRDNRLTRIPSEVSQAMELHVLDVAGNRLHHLPLSLTTLKLKALWLSDNQSQPLLTFQTDVDHTTGEKILTCVLLPQMPSEPICQESLPRCGAMESLVNDVSEEAWDDHSVHRVSAIRFLEDEKDEEENQTRTLQRRATPHPGELKNMKKTVENLRNDMNAAKGLDSNKNEVNHATERVTTSV", "length": 619 }, "evidence": [ { "id": "F1RZV9", "url": "https://omabrowser.org/oma/group/F1RZV9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80VQ1-1", "protein_name": "Leucine-rich repeat-containing protein 1", "gene_name": "Lrrc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHCIPLWRCNRHVEAIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESIAFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLLETIPEGIGKLKKLSILKLDQNRLTQLPEAIGDCENLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTMFCIRDNRLTRLPAEVSQAVELHVLDVAGNRLHHLPLSLTTLKLKALWLSDNQSQPLLTFQTDIDRATGEKILTCVLLPQMPSEPICQESLPRCGALESLVTDMSEEAWNDRSVHRVSAIRFLEDEKDEDENETRTLQRRATPHPGELKNMKKTVENLRNDMNAAKGLDSNKNEVNHAAERVTTSV", "length": 524 }, "evidence": [ { "id": "F1RZV9", "url": "https://omabrowser.org/oma/group/F1RZV9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BTT6-1", "protein_name": "Leucine-rich repeat-containing protein 1", "gene_name": "LRRC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNEIPEIPESISFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTENQLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQATELHVLDVAGNRLLHLPLSLTALKLKALWLSDNQSQPLLTFQTDTDYTTGEKILTCVLLPQLPSEPTCQENLPRCGALENLVNDVSDEAWNERAVNRVSAIRFVEDEKDEEDNETRTLLRRATPHPGELKHMKKTVENLRNDMNAAKGLDSNKNEVNHAIDRVTTSV", "length": 524 }, "evidence": [ { "id": "F1RZV9", "url": "https://omabrowser.org/oma/group/F1RZV9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RZV9", "url": "https://www.uniprot.org/uniprotkb/F1RZV9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RZV9", "url": "https://www.uniprot.org/uniprotkb/F1RZV9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RZV9", "url": "https://www.uniprot.org/uniprotkb/F1RZV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RZV9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 524, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RZV9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RZV9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RZV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZV9" }, { "id": "PF23598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disease resistance R13L4/SHOC-2-like LRR", "eco_id": "ECO_0000259", "start_pos": 191, "end_pos": 273, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 470, "end_pos": 472 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVT4-1", "uniprot_ac": "F1RVT4", "uniprot_id": "F1RVT4_PIG", "mass": { "chemical_mass": 48373.0, "monoisotopic_mass": 48373.0 }, "refseq": { "ac": "XP_003358143", "name": "protein FAM117A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358143" }, "gene_names": [ { "name": "FAM117A", "type": "recommended", "evidence": [ { "id": "F1RVT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVT4" } ] }, { "name": "FAM117A", "type": "synonym", "evidence": [ { "id": "XP_003358143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358143" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 117 member A", "type": "synonym", "evidence": [ { "id": "F1RVT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVT4/entry#names_and_taxonomy" } ] }, { "name": "protein FAM117A", "type": "synonym", "evidence": [ { "id": "XP_003358143", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358143" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVT4", "url": "https://www.uniprot.org/uniprotkb/F1RVT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM117A", "url": "https://www.uniprot.org/uniprotkb/F1RVT4", "locus": { "chromosome": "12", "start_pos": 25890775, "end_pos": 25945442, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017551", "url": "https://www.ensembl.org/id/ENSSSCG00000017551" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017551", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017551", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623099", "url": "https://www.ncbi.nlm.nih.gov/gene/100623099", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623099", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623099", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QWPRDTD", "url": "https://omabrowser.org/oma/group/QWPRDTD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVT4", "url": "https://www.orthodb.org/?gene=F1RVT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14972:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14972:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003358143", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358143", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RAG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVT4", "url": "https://www.uniprot.org/uniprotkb/F1RVT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RVT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAAAGGRGGGAWGPGRGGSGGLRRGCSPPAPAGSPRAGLQPLRATVPFQLQQPHQRRDGGGRAASVPCSVAPEKPVCRPQPPQVRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQELEGERSSSCTHKRSASWGSTDHRKEITKLKQQLQRTKLSRSGKEKERGSPLQGDHAVRGALMASPPSFPSGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEIPDGHRAPAPPQSGSCDHPLLLLEPGNLASSPSMPLASPQPSGQTSREEHRGATEELASIPTDKASSPGHPAFLEDGSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLMKPLFPSMGFIFRNCPSSPGSPLPPASPRPPARKDPEASKASSLPFEPWQRSPPSEEPVLFQSSLVV", "length": 453, "header": "tr|F1RVT4-1|F1RVT4_PIG Isoform 1 of Family with sequence similarity 117 member A OS=Sus scrofa OX=9823 GN=FAM117A PE=4 SV=1 CANONICAL=F1RVT4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RAG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAG1/entry", "sequence": { "sequence": "MASPPSFPSGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEIPDGHRAPAPPQSGSCDHPLLLLEPGNLASSPSMPLASPQPSGQTSREEHRGATEELASIPTDKASSPGHPAFLEDGSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLMKPLFPSMGFIFRNCPSSPGSPLPPASPRPPARKDPEASKASSLPFEPWQRSPPSEEPVLFQSSLVV", "length": 263, "header": "tr|A0A5G2RAG1-1|F1RVT4_PIG Computationally mapped isoform of Family with sequence similarity 117 member A OS=Sus scrofa OX=9823 GN=FAM117A PE=4 SV=2 CANONICAL=F1RVT4-1" }, "locus": { "chromosome": "12", "start_pos": 25901945, "end_pos": 25891737, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088902.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088902.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067598.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067598.2" } ] } }, { "isoform_ac": "F1RVT4-1", "url": "https://www.uniprot.org/uniprotkb/F1RVT4/entry", "sequence": { "sequence": "MAGAAAGGRGGGAWGPGRGGSGGLRRGCSPPAPAGSPRAGLQPLRATVPFQLQQPHQRRDGGGRAASVPCSVAPEKPVCRPQPPQVRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQELEGERSSSCTHKRSASWGSTDHRKEITKLKQQLQRTKLSRSGKEKERGSPLQGDHAVRGALMASPPSFPSGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEIPDGHRAPAPPQSGSCDHPLLLLEPGNLASSPSMPLASPQPSGQTSREEHRGATEELASIPTDKASSPGHPAFLEDGSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLMKPLFPSMGFIFRNCPSSPGSPLPPASPRPPARKDPEASKASSLPFEPWQRSPPSEEPVLFQSSLVV", "length": 453, "header": "tr|F1RVT4-1|F1RVT4_PIG Isoform 1 of Family with sequence similarity 117 member A OS=Sus scrofa OX=9823 GN=FAM117A PE=4 SV=1 CANONICAL=F1RVT4-1" }, "locus": { "chromosome": "12", "start_pos": 25945386, "end_pos": 25891737, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019105.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019105.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018599.1", "url": "https://www.ensembl.org/id/ENSSSCP00000018599.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RAG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623099", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623099", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2QC58-1", "protein_name": "Family with sequence similarity 117, member A", "gene_name": "Fam117a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGAAAGGRGGGSWGPGRGGAGCLRRGCSPPAPAGSPRVGLQPLRATVPFQLQQPHQRRDGGGRAASVPCSVAPEKPVCRPQPPQVRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQEPEGERASFCMHKRSASWGSTDHRKEITKLRQQLQRTKLSRSGKEKERSSPVQGDHAVLGAVRVSLPSLPAGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEVPDGHRAPAPPQNSNCDHPLLLEPGNLTSSPSMPLVSPQPPGQASREHHQSATEELASIHGNKASSAGHPAFLEDDSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLIKPLFPSMGFIFRNCPSSPGSPLPPASPRAPPRKDPEASKASSLPFEPWQRTPPSEESVLFQSSLVV", "length": 452 }, "evidence": [ { "id": "F1RVT4", "url": "https://omabrowser.org/oma/group/F1RVT4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TNF9-1", "protein_name": "Protein FAM117A", "gene_name": "Fam117a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGAAAGGRGGGSWGPGRGGAGGLRRGCSPPAPAGSPRVGLQPLRATVPFQLQQPHQRRDGGGRAASVPCSVAPEKSVCRPQPPQVRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQEPEGERASFCMHKRSASWGSTDHRKEITKLKQQLQRTKLSRSGKEKERSCPVQGDHAALGAGRASLPSHPPGPPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEVPDGHRAPAPPQNSSCDHSLLLEPGNLTSSPSVPLASPQPPSQASREEHQGATEELASIHGNKASSPGNPAFLEDGSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLIKPLFPSMGFIFRNCPSSPGSPLPTASPRAPRKGPEASKASSLPSEPWQRSPPSEESVLFQSSLVV", "length": 451 }, "evidence": [ { "id": "F1RVT4", "url": "https://omabrowser.org/oma/group/F1RVT4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C073-1", "protein_name": "Protein FAM117A", "gene_name": "FAM117A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGAAAGGRGGGAWGPGRGGAGGLRRGCSPPAPAGSPRAGLQPLRATIPFQLQQPHQRRDGGGRAASVPCSVAPEKSVCRPQPLQVRRTFSLDTILSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQELEGERASSCAHKRSASWGSTDHRKEISKLKQQLQRTKLSRSGKEKERGSPLLGDHAVRGALRASPPSFPSGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILDIPDGHRAPAPPQSGSCDHPLLLLEPGNLASSPSMSLASPQPCGLASHEEHRGAAEELASTPNDKASSPGHPAFLEDGSPSPVLAFAASPRPNHSYIFKREPPEGCEKVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVNLMKPLFPGMGFIFRNCPSNPGSPLPPASPRPPPRKDPEASKASPLPFEPWQRTPPSEEPVLFQSSLMV", "length": 453 }, "evidence": [ { "id": "F1RVT4", "url": "https://omabrowser.org/oma/group/F1RVT4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 331, "end_pos": 333 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RWK3-1", "uniprot_ac": "F1RWK3", "uniprot_id": "F1RWK3_PIG", "mass": { "chemical_mass": 56854.0, "monoisotopic_mass": 56854.0 }, "refseq": { "ac": "XP_001926638", "name": "cysteine-rich secretory protein LCCL domain-containing 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926638" }, "gene_names": [ { "name": "CRISPLD1", "type": "recommended", "evidence": [ { "id": "F1RWK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK3" } ] }, { "name": "CRISPLD1", "type": "synonym", "evidence": [ { "id": "XP_001926638", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926638" } ] } ], "protein_names": [ { "name": "Cysteine rich secretory protein LCCL domain containing 1", "type": "synonym", "evidence": [ { "id": "F1RWK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK3/entry#names_and_taxonomy" } ] }, { "name": "cysteine-rich secretory protein LCCL domain-containing 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001926638", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926638" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RWK3", "url": "https://www.uniprot.org/uniprotkb/F1RWK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRISPLD1", "url": "https://www.uniprot.org/uniprotkb/F1RWK3", "locus": { "chromosome": "4", "start_pos": 60948335, "end_pos": 60998368, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006171", "url": "https://www.ensembl.org/id/ENSSSCG00000006171" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006171", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006171", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18813", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18813", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152961", "url": "https://www.ncbi.nlm.nih.gov/gene/100152961", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152961", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152961", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MVWDVEL", "url": "https://omabrowser.org/oma/group/MVWDVEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2RCA8", "url": "https://www.orthodb.org/?gene=A0A5G2RCA8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RWK3", "url": "https://www.orthodb.org/?gene=F1RWK3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31331:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31331:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926638", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926638", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RCA8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWK3", "url": "https://www.uniprot.org/uniprotkb/F1RWK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWK3-1", "url": "https://www.uniprot.org/uniprotkb/F1RWK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKCTAREWLRVTTLLFMARAVPAMVVPNATLLEKLLEKYMDEDGEWWMAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAETCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVKDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDSYYPPREEETNEIERQQSQVHATHIRTRADDSDRNEVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNDGGWVDITRQGRKHYFIKSNRNGIQTIGKYQSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKTYTASFQNGIFSESLQNPPGGKAFRVFAVM", "length": 500, "header": "tr|F1RWK3-1|F1RWK3_PIG Isoform 1 of Cysteine rich secretory protein LCCL domain containing 1 OS=Sus scrofa OX=9823 GN=CRISPLD1 PE=4 SV=1 CANONICAL=F1RWK3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RCA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA8/entry", "sequence": { "sequence": "MNMNATHIVHSDVLVLYVLIIHRGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDSYYPPREEETNEIERQQSQVHATHIRTRADDSDRNEVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNDGGWVDITRQGRKHYFIKSNRNGIQTIGKYQSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKTYTASFQNGIFSESLQNPPGGKAFRVFAVM", "length": 314, "header": "tr|A0A5G2RCA8-1|F1RWK3_PIG Computationally mapped isoform of Cysteine rich secretory protein LCCL domain containing 1 OS=Sus scrofa OX=9823 GN=CRISPLD1 PE=4 SV=1 CANONICAL=F1RWK3-1" }, "locus": { "chromosome": "4", "start_pos": 60972027, "end_pos": 60949395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089471.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089471.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074016.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074016.1" } ] } }, { "isoform_ac": "F1RWK3-1", "url": "https://www.uniprot.org/uniprotkb/F1RWK3/entry", "sequence": { "sequence": "MKCTAREWLRVTTLLFMARAVPAMVVPNATLLEKLLEKYMDEDGEWWMAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAETCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVKDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDSYYPPREEETNEIERQQSQVHATHIRTRADDSDRNEVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNDGGWVDITRQGRKHYFIKSNRNGIQTIGKYQSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKTYTASFQNGIFSESLQNPPGGKAFRVFAVM", "length": 500, "header": "tr|F1RWK3-1|F1RWK3_PIG Isoform 1 of Cysteine rich secretory protein LCCL domain containing 1 OS=Sus scrofa OX=9823 GN=CRISPLD1 PE=4 SV=1 CANONICAL=F1RWK3-1" }, "locus": { "chromosome": "4", "start_pos": 60996906, "end_pos": 60949395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006765.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006765.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006582.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006582.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 79, "start_aa": "Thr", "end_pos": 79, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RCA8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152961", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152961", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N6U0-1", "protein_name": "Cysteine-rich secretory protein LCCL domain-containing 1 isoform X1", "gene_name": "Crispld1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MMCTAREWLRVTALLFVARAVPAMVVPNATLLEKLLEKYMDEDGEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAETCLWEHGPANLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSEGYYTPREEETNEIERQQAQVRDTHVRTRSDDSNRNEVVSTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGVQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGSRVYSDLSSICRAAVHAGVVRNNGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "F1RWK3", "url": "https://omabrowser.org/oma/group/F1RWK3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B5DFM5-1", "protein_name": "Cysteine-rich secretory protein LCCL domain containing 1", "gene_name": "Crispld1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMCKAQEWLRMTALLFVARAVPAMVVPNATLLEKLLEKYMDEDDEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPAASNMEYMTWDVELERSAESWAETCLWEHGPTSLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYEHECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGKPCSACPPSFGGGCRENLCYKEGSDQYYTPQEEETNEIERQESQVHDTHVRTRSDDSNRNDVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGIQTIGKYRSANSFIVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGSRIYSDLSSICRAAVHAGVIRNHGGYVDVMPVDKRRMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "F1RWK3", "url": "https://omabrowser.org/oma/group/F1RWK3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CGD2-1", "protein_name": "Cysteine-rich secretory protein LCCL domain-containing 1", "gene_name": "Crispld1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMCKAQEWLRVTALLFVARAVPAMVVPNATLLEKLLEKYMDEDGEWWTAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAEMCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQAWYDEVRDFSYPYENECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAVNLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDRYYTPREEETNEIERQQSQVHDTHVRTRSDDSDRNDVISTQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNEGGWVDVTRQGRKHYFIKSNRNGIQTIGKYHSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQSNPHYARVIGTRIYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKMYTASFQNGIFSESLQNPTGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "F1RWK3", "url": "https://omabrowser.org/oma/group/F1RWK3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H336-1", "protein_name": "Cysteine-rich secretory protein LCCL domain-containing 1", "gene_name": "CRISPLD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKCTAREWLRVTTVLFMARAIPAMVVPNATLLEKLLEKYMDEDGEWWIAKQRGKRAITDNDMQSILDLHNKLRSQVYPTASNMEYMTWDVELERSAESWAESCLWEHGPASLLPSIGQNLGAHWGRYRPPTFHVQSWYDEVKDFSYPYEHECNPYCPFRCSGPVCTHYTQVVWATSNRIGCAINLCHNMNIWGQIWPKAVYLVCNYSPKGNWWGHAPYKHGRPCSACPPSFGGGCRENLCYKEGSDRYYPPREEETNEIERQQSQVHDTHVRTRSDDSSRNEVISAQQMSQIVSCEVRLRDQCKGTTCNRYECPAGCLDSKAKVIGSVHYEMQSSICRAAIHYGIIDNDGGWVDITRQGRKHYFIKSNRNGIQTIGKYQSANSFTVSKVTVQAVTCETTVEQLCPFHKPASHCPRVYCPRNCMQANPHYARVIGTRVYSDLSSICRAAVHAGVVRNHGGYVDVMPVDKRKTYIASFQNGIFSESLQNPPGGKAFRVFAVV", "length": 500 }, "evidence": [ { "id": "F1RWK3", "url": "https://omabrowser.org/oma/group/F1RWK3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1RWK3", "url": "https://www.uniprot.org/uniprotkb/F1RWK3" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1RWK3", "url": "https://www.uniprot.org/uniprotkb/F1RWK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "face morphogenesis", "id": "GO:0060325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060325", "evidence": [ { "database": "UniProtKB", "id": "F1RWK3", "url": "https://www.uniprot.org/uniprotkb/F1RWK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RWK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWK3" }, { "id": "PS50820", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50820" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LCCL", "eco_id": "ECO_0000259", "start_pos": 289, "end_pos": 384, "start_aa": "Met", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 79 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 205, "end_pos": 207 }, { "start_pos": 28, "end_pos": 30 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZU6-1", "uniprot_ac": "F1RZU6", "uniprot_id": "F1RZU6_PIG", "mass": { "chemical_mass": 99125.0, "monoisotopic_mass": 99125.0 }, "refseq": {}, "gene_names": [ { "name": "COL21A1", "type": "recommended", "evidence": [ { "id": "F1RZU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZU6" } ] } ], "protein_names": [ { "name": "Collagen alpha-1(XXI) chain", "type": "recommended", "evidence": [ { "id": "F1RZU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZU6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RZU6", "url": "https://www.uniprot.org/uniprotkb/F1RZU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL21A1", "url": "https://www.uniprot.org/uniprotkb/F1RZU6", "locus": { "chromosome": "7", "start_pos": 29609036, "end_pos": 29415089, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001500", "url": "https://www.ensembl.org/id/ENSSSCG00000001500" } ] } } ], "crossref": [ { "id": "F1RZU6", "url": "https://alphafold.ebi.ac.uk/entry/F1RZU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001500", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001500", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523618", "url": "https://www.ncbi.nlm.nih.gov/gene/100523618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523618", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523618", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WLVNISN", "url": "https://omabrowser.org/oma/group/WLVNISN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2RDN7", "url": "https://www.orthodb.org/?gene=A0A5G2RDN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24020", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24020", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24020:SF90", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24020:SF90", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24637", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24637", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24637:SF396", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24637:SF396", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A0J2", "url": "https://www.uniprot.org/uniprotkb/A0A287A0J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A0J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0J2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDN7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCP8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZU6", "url": "https://www.uniprot.org/uniprotkb/F1RZU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZU6-1", "url": "https://www.uniprot.org/uniprotkb/F1RZU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHQITFLRMVLVLLLQNSVLAEDGEIRSSCRTAPTDLVFILDGSYSVGPENFEIVKKWLVNITKNFDIGPKFIQVGVVQYSDYPVLEIPLGRHESGEKLLAAVGSIHYLGGNTRTGKAIQFALDYLFAKSSRFLTKIAVVLTDGKSQDEVKDAAEAARDSKITLFAIGVGSETEDAELRAIANKPSSTYVFHVEDYIAISKIREVMKQKLCEESVCPTRIPVAARDEKGFDILLGLGVKKKAKKRIQLSPTKIKGYEVTSKVDLSESTSNVFPEGLPPSYVFVSTQRFKVKKMWDLWRILTMDGRPQIAVTLNGVDKTLLFTTTSVINGSQVVTFADPRVKTLYDEGWHQIRLLVTEQDVTLYIDDQQIENKPLHPVLGIFISGQTQIGKYSGKEETVQFDVQKLRIYCDPEQNNRETACEIPGFVKCLNGPSDVGSTEAPCICPPGKPGLQGRKGDPGQPGNPGYPGQPGQDGKPGYQGVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDRGLPGFPGLHGMPGSKGEMGPKGDKGSPGFYGKKGAKGEKGTVGFPGLPGRAGEPGRHGKDGLMGSPGYKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPLGKKGAPGIPGLMGSDGPPGQPGTPGPKGNKGEPGLQGLPGASGLKGEPGAVGPPGEPGYLGLPGIQGKKGDKGNQGEKGIQGQKGENGRPGIPGQQGIQGHPGAKGERGEKGEPGARGATGPKGESGVDGVMGPAGPQGQPGETGPQGPPGLDGKPGREFSEQFIRQVCTDVLRAQLPALLQSGRIQSCDHCQSQHGSPGIPGPPGPMGPEGPRGFPGLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGLGYPGEQGPPGPPGPEGPPGISKEGPPGDPGLPGKDGDHGKPGTQGQPGPPGICDPSLCFSVIVGRDPFRKGPNY", "length": 956, "header": "tr|F1RZU6-1|F1RZU6_PIG Isoform 1 of Collagen alpha-1(XXI) chain OS=Sus scrofa OX=9823 GN=COL21A1 PE=1 SV=4 CANONICAL=F1RZU6-1" }, "isoforms": [ { "isoform_ac": "A0A287A0J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A0J2/entry", "sequence": { "sequence": "MAHQITFLRMVLVLLLQNSVLAEDGEIRSSCRTAPTDLVFILDGSYSVGPENFEIVKKWLVNITKNFDIGPKFIQVGVVQYSDYPVLEIPLGRHESGEKLLAAVGSIHYLGGNTRTGKAIQFALDYLFAKSSRFLTKIAVVLTDGKSQDEVKDAAEAARDSKITLFAIGVGSETEDAELRAIANKPSSTYVFHVEDYIAISKIREVMKQKLCEESVCPTRIPVAARDEKGFDILLGLGVKKKAKKRIQLSPTKIKGYEVTSKVDLSESTSNVFPEGLPPSYVFVSTQRFKVKKMWDLWRILTMDGRPQIAVTLNGVDKTLLFTTTSVINGSQVVTFADPRVKTLYDEGWHQIRLLVTEQDVTLYIDDQQIENKPLHPVLGIFISGQTQIGKYSGKEETVQFDVQKLRIYCDPEQNNRETACEIPGFVSRMDDFFPKWCPSTFKAMSKIHMPTL", "length": 453, "header": "tr|A0A287A0J2-1|A0A287A0J2_PIG Computationally mapped isoform of Collagen alpha-1(XXI) chain OS=Sus scrofa OX=9823 GN=COL21A1 PE=1 SV=2 CANONICAL=F1RZU6-1" }, "locus": { "chromosome": "7", "start_pos": 29494035, "end_pos": 29472502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048738.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048738.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037264.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037264.2" } ] } }, { "isoform_ac": "A0A5G2RDN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDN7/entry", "sequence": { "sequence": "MAHQITFLRMVLVLLLQNSVLAEDGEIRSSCRTAPTDLVFILDGSYSVGPENFEIVKKWLVNITKNFDIGPKFIQVGVVQYSDYPVLEIPLGRHESGEKLLAAVGSIHYLGGNTRTGKAIQFALDYLFAKSSRFLTKIAVVLTDGKSQDEVKDAAEAARDSKITLFAIGVGSETEDAELRAIANKPSSTYVFHVEDYIAISKIREVMKQKLCEESVCPTRIPVAARDEKGFDILLGLGVKKKAKKRIQLSPTKIKGYEVTSKVDLSESTSNVFPEGLPPSYVFVSTQRFKVKKMWDLWRILTMDGRPQIAVTLNGVDKTLLFTTTSVINGSQVVTFADPRVKTLYDEGWHQIRLLVTEQDVTLYIDDQQIENKPLHPVLGIFISGQTQIGKYSGKEETVQFDVQKLRIYCDPEQNNRETACEIPGFNGECLNGPSDVGSTEAPCICPPGKPGLQGRKGDPGQPGNPGYPGQPGQDGKPGYQGVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDRGLPGFPGLHGMPGSKGEMGPKGDKGSPGFYGKKGAKGEKGTVGFPGLPGRAGEPGRHGKDGLMGSPGYKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPLGKKGAPGIPGLMGSDGPPGQPGTPGPKGNKGEPGLQGLPGASGLKGEPGAVGPPGEPGYLGLPGIQGKKGDKGNQGEKGIQGQKGENGRPGIPGQQGIQGHPGAKGERGEKGEPGARGATGPKGESGVDGVMGPAGPQGQPGETGPQGPPGLDGKPGREFSEQFIRQVCTDVLRAQLPALLQSGRIQSCDHCQSQHGSPGIPGPPGPMGPEGPRGFPGLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGLGYPGEQGPPGPPGPEGPPGISKEGPPGDPGLPGKDGDHGKPGTQGQPGPPGICDPSLCFSVIVGRDPFRKGPNY", "length": 957, "header": "tr|A0A5G2RDN7-1|F1RZU6_PIG Computationally mapped isoform of Collagen alpha-1(XXI) chain OS=Sus scrofa OX=9823 GN=COL21A1 PE=1 SV=1 CANONICAL=F1RZU6-1" }, "locus": { "chromosome": "7", "start_pos": 29607949, "end_pos": 29472502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076946.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076946.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072535.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072535.1" } ] } }, { "isoform_ac": "A0A8W4FCP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCP8/entry", "sequence": { "sequence": 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Computationally mapped isoform of Collagen alpha-1(XXI) chain OS=Sus scrofa OX=9823 GN=COL21A1 PE=1 SV=1 CANONICAL=F1RZU6-1" }, "locus": { "chromosome": "7", "start_pos": 29607949, "end_pos": 29472502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096545.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096545.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077091.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077091.1" } ] } }, { "isoform_ac": "F1RZU6-1", "url": "https://www.uniprot.org/uniprotkb/F1RZU6/entry", "sequence": { "sequence": "MAHQITFLRMVLVLLLQNSVLAEDGEIRSSCRTAPTDLVFILDGSYSVGPENFEIVKKWLVNITKNFDIGPKFIQVGVVQYSDYPVLEIPLGRHESGEKLLAAVGSIHYLGGNTRTGKAIQFALDYLFAKSSRFLTKIAVVLTDGKSQDEVKDAAEAARDSKITLFAIGVGSETEDAELRAIANKPSSTYVFHVEDYIAISKIREVMKQKLCEESVCPTRIPVAARDEKGFDILLGLGVKKKAKKRIQLSPTKIKGYEVTSKVDLSESTSNVFPEGLPPSYVFVSTQRFKVKKMWDLWRILTMDGRPQIAVTLNGVDKTLLFTTTSVINGSQVVTFADPRVKTLYDEGWHQIRLLVTEQDVTLYIDDQQIENKPLHPVLGIFISGQTQIGKYSGKEETVQFDVQKLRIYCDPEQNNRETACEIPGFVKCLNGPSDVGSTEAPCICPPGKPGLQGRKGDPGQPGNPGYPGQPGQDGKPGYQGVAGSPGVPGSPGIQGARGLPGYRGEPGRDGEKGDRGLPGFPGLHGMPGSKGEMGPKGDKGSPGFYGKKGAKGEKGTVGFPGLPGRAGEPGRHGKDGLMGSPGYKGEAGPPGAPGQDGLRGEPGIPGFPGNQGLMGQKGEIGPPGPLGKKGAPGIPGLMGSDGPPGQPGTPGPKGNKGEPGLQGLPGASGLKGEPGAVGPPGEPGYLGLPGIQGKKGDKGNQGEKGIQGQKGENGRPGIPGQQGIQGHPGAKGERGEKGEPGARGATGPKGESGVDGVMGPAGPQGQPGETGPQGPPGLDGKPGREFSEQFIRQVCTDVLRAQLPALLQSGRIQSCDHCQSQHGSPGIPGPPGPMGPEGPRGFPGLPGRDGVPGLMGAPGRPGAKGLKGLPGRNGAKGSQGLGYPGEQGPPGPPGPEGPPGISKEGPPGDPGLPGKDGDHGKPGTQGQPGPPGICDPSLCFSVIVGRDPFRKGPNY", "length": 956, "header": "tr|F1RZU6-1|F1RZU6_PIG Isoform 1 of Collagen alpha-1(XXI) chain OS=Sus scrofa OX=9823 GN=COL21A1 PE=1 SV=4 CANONICAL=F1RZU6-1" }, "locus": { "chromosome": "7", "start_pos": 29607949, "end_pos": 29472502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001673.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001673.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001629.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001629.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 650, "start_aa": "Thr", "end_pos": 650, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr650", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RDN7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523618", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523618", "resource": "KEGG Pathway" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RZU6", "url": "https://www.uniprot.org/uniprotkb/F1RZU6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": 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modification: synthesis of GPI-anchored proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y8T8-1", "protein_name": "Neuritin 1", "gene_name": "NRN1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "GSPSPHPQRSPSGALLLLSPCASGVGWARVDGHRAALSAFVLPAWGRGRCHASITSRAGTRGPHRGAVPPSCPPPRLSVRAHALLHGDPASHHPSLRRRLLLPAHLVQAVRAAGRCDAVFRGFSDCLLRLGDNMANYPQDLDDKRNLQTICAYWDDFHACTLTALTDCQEGATDLWEKLRRESKNLDFQGSLFELCGGGSGAAPSLLPPALPVLLGALGAALATWGLPF", "length": 229 }, "evidence": [ { "id": "F1RW81", "url": "https://omabrowser.org/oma/group/F1RW81/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O08957-1", "protein_name": "Neuritin", "gene_name": "Nrn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLNGRYISLILAVQIAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKTNIKTVCTYWEDFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSGNGAAGSLLPALSVLLVSLSAALATWLSF", "length": 142 }, "evidence": [ { "id": 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"database": "UniProtKB", "id": "F1RW81", "url": "https://www.uniprot.org/uniprotkb/F1RW81" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "F1RW81", "url": "https://www.uniprot.org/uniprotkb/F1RW81" } ], "pmid": "" }, { "name": "regulation of synapse maturation", "id": "GO:0090128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090128", "evidence": [ { "database": "UniProtKB", "id": "F1RW81", "url": "https://www.uniprot.org/uniprotkb/F1RW81" } ], "pmid": "" }, { "name": "presynaptic modulation of chemical synaptic transmission", "id": "GO:0099171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099171", "evidence": [ { "database": "UniProtKB", "id": "F1RW81", "url": "https://www.uniprot.org/uniprotkb/F1RW81" } ], "pmid": "" }, { "name": "neuron projection extension", "id": "GO:1990138", 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Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515083", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515083", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNCVAYR", "url": "https://omabrowser.org/oma/group/NNCVAYR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5K1UKL9", "url": "https://www.orthodb.org/?gene=A0A5K1UKL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S3C6", "url": "https://www.orthodb.org/?gene=F1S3C6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF29", "url": 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"https://www.uniprot.org/uniprotkb/F1S3C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3C6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3C6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENAEQPVGGNKVVEHEVTENLNSDPLLGLCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPPAHSEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNNSSLH", "length": 412, "header": "tr|F1S3C6-1|F1S3C6_PIG Isoform 1 of Zinc finger protein 821 OS=Sus scrofa OX=9823 GN=ZNF821 PE=3 SV=2 CANONICAL=F1S3C6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIF7/entry", "sequence": { "sequence": "MSRRKQTNPNKVHCDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENAEQPVGGNKVVEHEVTENLNSDPLLGLCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPPAHSEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNNSSLH", "length": 370, "header": "tr|A0A286ZIF7-1|F1S3C6_PIG Computationally mapped isoform of Zinc finger protein 821 OS=Sus scrofa OX=9823 GN=ZNF821 PE=3 SV=1 CANONICAL=F1S3C6-1" }, "locus": { "chromosome": "6", "start_pos": 14865404, "end_pos": 14850569, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044684.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044684.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031266.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031266.1" } ] } }, { "isoform_ac": "A0A5K1UKL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1UKL9/entry", "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENAEQPVGGNKVVEHEVTENLNSDPLLGLCQCPLCQLDCGSREQLIAHVYQREASRSP", "length": 146, "header": "tr|A0A5K1UKL9-1|F1S3C6_PIG Computationally mapped isoform of Zinc finger protein 821 OS=Sus scrofa OX=9823 GN=ZNF821 PE=3 SV=1 CANONICAL=F1S3C6-1" }, "locus": { "chromosome": "6", "start_pos": 14865404, "end_pos": 14851200, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024430.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024430.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025890.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025890.3" } ] } }, { "isoform_ac": "F1S3C6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3C6/entry", "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENAEQPVGGNKVVEHEVTENLNSDPLLGLCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPPAHSEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNNSSLH", "length": 412, "header": "tr|F1S3C6-1|F1S3C6_PIG Isoform 1 of Zinc finger protein 821 OS=Sus scrofa OX=9823 GN=ZNF821 PE=3 SV=2 CANONICAL=F1S3C6-1" }, "locus": { "chromosome": "6", "start_pos": 14865404, "end_pos": 14850569, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062831.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062831.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058039.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058039.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5K1UKL9", "url": "https://www.uniprot.org/uniprotkb/A0A5K1UKL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515083", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515083", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N0I4-1", "protein_name": "Zinc finger protein 821", "gene_name": "Znf821", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQQQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENPEQPVGSGNEVVEHEVTESLNSDPLLELCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPQVHSEGPSSAEGKDITCSPPVYPAGILLVCNNCAAYRKLLETQTPNVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNNSSLH", "length": 413 }, "evidence": [ { "id": "F1S3C6", "url": "https://omabrowser.org/oma/group/F1S3C6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XY16-1", "protein_name": "Zinc finger protein 821", "gene_name": "ZNF821", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQRQSDFLSLWLPGEQVFAGLEEQARQAMMKNSFPGALGDQRPAIHPLQDRDFSSSGSDDEETTHDEVSSHTSEEDGSMLKVKKELENAEQHAAGTPLMRENEVPASLNADSMLGLSKCPLCQLEYESREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQLSNCAVCGARFTSHATFNSEKLTEVLSADRLPMPQSEGPSSIKGKDITFHSPVYPAGILLVCNNCAAYRKLLEAQTPGMRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRVKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVGNVELENQLLGKMTFEEQSNSMLH", "length": 412 }, "evidence": [ { "id": "F1S3C6", "url": "https://omabrowser.org/oma/group/F1S3C6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O75541-1", "protein_name": "Zinc finger protein 821", "gene_name": "ZNF821", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENTEQPVGGNEVVEHEVTGNLNSDPLLELCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNMESLPTVHNEGPSSAEGKDIAFSPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNSSSLH", "length": 412 }, "evidence": [ { "id": "F1S3C6", "url": "https://omabrowser.org/oma/group/F1S3C6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q32KS7-1", "protein_name": "Zinc finger protein 821", "gene_name": "ZNF821", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELENAEQPVGGKKVVEHEVTENLHSDPLLGLCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPEVLNVESLPPAHSEGPSSAEGKDIAFTPPVYPAGILLVCNNCAAYRKLLEAQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNSSSLH", "length": 412 }, "evidence": [ { "id": "F1S3C6", "url": "https://omabrowser.org/oma/group/F1S3C6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PD05-1", "protein_name": "Zinc finger protein 821", "gene_name": "Znf821", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRRKQTNPNKVHWDQVFAGLEEQARQAMMKTDFPGDLGSQRQAIQQLRDQDSSSSDSEGDEEETTQDEVSSHTSEEDGGVVKVEKELETAEAPVSSGDALAEREVTENLNSDPLLQLCQCPLCQLDCGSREQLIAHVYQHTAAVVSAKSYMCPVCGRALSSPGSLGRHLLIHSEDQRSNCAVCGARFTSHATFNSEKLPQVLNMESVPQVHSEGPSSAEGKDIACSPPVYPAGILLVCNNCAAYRKLLETQTPSVRKWALRRQNEPLEVRLQRLERERTAKKSRRDNETPEEREVRRMRDREAKRLQRMQETDEQRARRLQRDREAMRLKRANETPEKRQARLIREREAKRLKRRLEKMDMMLRAQFGQDPSAMAALAAEMNFFQLPVSGVELDSQLLGKMAFEEQNNSSLH", "length": 413 }, "evidence": [ { "id": "F1S3C6", "url": "https://omabrowser.org/oma/group/F1S3C6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1S3C6", "url": "https://www.uniprot.org/uniprotkb/F1S3C6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": 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"end_pos": 177, "start_aa": "Tyr", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 287, "end_pos": 289 }, { "start_pos": 333, "end_pos": 335 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 408, "end_pos": 410 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"categories": [ "Protein Classification" ] }, { "id": "IPR041898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255204", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255204", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCASEAI", "url": "https://omabrowser.org/oma/group/NCASEAI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RUI9", "url": "https://www.orthodb.org/?gene=F1RUI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11736:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11736:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01454", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01454", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005673681", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673681", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5K1USP4", "url": "https://www.uniprot.org/uniprotkb/A0A5K1USP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1USP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1USP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUI9", "url": "https://www.uniprot.org/uniprotkb/F1RUI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUI9-1", "url": "https://www.uniprot.org/uniprotkb/F1RUI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGSYRMEPEGYSVEDMDEGSDEVEEEEMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPMLARTLMEAFQLDSETLASEAAARAANVARAASSNRASRAAAAAARATYSQVVPNHSGATDQASAGDPQPMTYAAAAEARAATPERGLASPHSSQMLANSERAAPGAPAASSPQPQTSSQAQGAATEGPSTACAFPQAPGARDMDATRPKAAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAAPEGPSGASGGAQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVAAAAAAKAKMATSIPEPEGAAATSQQSAEPWARMGGKRTKKSKHLDDEYESSEEEREPPVVPPTWRASQPPPTMGRAQMAPRPPTAVRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGIIFMNGNRASEAVLWEALRKMGLRPGVKHPFLGDLRKLITEDFVKQKYLEYKKIPNSSPPEYEFLWGLRARHETSKMRVLRFIAQYQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRATWRAGVSSGTNGPASTSMLDGPSTSSTIRTRNAARTSASFFSWIQ", "length": 742, "header": "tr|F1RUI9-1|F1RUI9_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255204 PE=4 SV=2 CANONICAL=F1RUI9-1" }, "isoforms": [ { "isoform_ac": "A0A5K1USP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1USP4/entry", "sequence": { "sequence": "MAEGSYRMEPEGYSVEDMDEGSDEVEEEEMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPMLARTLMEAFQLDSETLASEAAARAANVARAASSNRASRAAAAAARATYSQVVPNHSGATDQASAGDPQPMTYAAAAEARAATPERGLASPHSSQMLANSERAAPGAPAASSPQPQTSSQAQGAATEGPSTACAFPQAPGARDMDATRPKAAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAAPEGPSGASGGAQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVAAAAAAKAKMATSIPEPEGAAATSQQSAEPWARMGGKRTKKSKHLDDEYESSEEEREPPVVPPTWRASQPPPTMGRAQMAPRPPTAVRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGIIFMNGNRASEAVLWEALRKMGLRPGVKHPFLGDLRKLITEDFVKQKSLGLSGSLSTPDSYLEYKKIPNSSPPEYEFLWGLRARHETSKMRVLRFIAQYQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRATWRAGVSSGTNGPASTSMLDGPSTSSTIRTRNAARTSASFFSWIQQR", "length": 757, "header": "tr|A0A5K1USP4-1|F1RUI9_PIG Computationally mapped isoform of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255204 PE=4 SV=1 CANONICAL=F1RUI9-1" }, "locus": { "chromosome": "AEMK02000254.1", "start_pos": 122010, "end_pos": 115750, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034646.3", "url": "https://www.ensembl.org/id/ENSSSCT00000034646.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028513.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028513.3" } ] } }, { "isoform_ac": "F1RUI9-1", "url": "https://www.uniprot.org/uniprotkb/F1RUI9/entry", "sequence": { "sequence": "MAEGSYRMEPEGYSVEDMDEGSDEVEEEEMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPMLARTLMEAFQLDSETLASEAAARAANVARAASSNRASRAAAAAARATYSQVVPNHSGATDQASAGDPQPMTYAAAAEARAATPERGLASPHSSQMLANSERAAPGAPAASSPQPQTSSQAQGAATEGPSTACAFPQAPGARDMDATRPKAAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAAPEGPSGASGGAQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVAAAAAAKAKMATSIPEPEGAAATSQQSAEPWARMGGKRTKKSKHLDDEYESSEEEREPPVVPPTWRASQPPPTMGRAQMAPRPPTAVRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGIIFMNGNRASEAVLWEALRKMGLRPGVKHPFLGDLRKLITEDFVKQKYLEYKKIPNSSPPEYEFLWGLRARHETSKMRVLRFIAQYQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRATWRAGVSSGTNGPASTSMLDGPSTSSTIRTRNAARTSASFFSWIQ", "length": 742, "header": "tr|F1RUI9-1|F1RUI9_PIG Isoform 1 of MAGE domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255204 PE=4 SV=2 CANONICAL=F1RUI9-1" }, "locus": { "chromosome": "AEMK02000254.1", "start_pos": 121798, "end_pos": 115750, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013470.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013470.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013110.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013110.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 382, "start_aa": "Thr", "end_pos": 382, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr382", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5K1USP4", "url": "https://www.uniprot.org/uniprotkb/A0A5K1USP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255204", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255204", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MDL6-1", "protein_name": "MAGE domain-containing protein", "gene_name": "LOC112445144", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEGSYRKESEGYNVEDMDEGSDEVGEEDMVEGNDYEEFGAFGGYGALTSFDIRILRAFGSLGPGFRILANEPWELENPVLARTLLEAFRMDPETLANETAARAANVARAAASNQAARAAATAARATYNQVVTNHHPVATHQASGGDTQPMTSAAQAPAATPETSVASPHSSRMLVNSEMAAPGAPARSPQPQTSSQAQEAAAEGPSTACAFPQASRASEMDATRPKTAFLGQNDAFDFSQPAGVSGMAFPRPKRPAPAQEAATEGPSVASRGTQAASAGEGAATRPKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPESAAATSQQSAEPWARMGGKRTKKSKHLDDEYESGEEEREPPAVPPTWRASQPLLTTARPQVAPRPSMALRSQVPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRSDMLKDVIREYDEHFPEIIERATYTLEKVGVGPGAALWSRSSREPLTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKMGLRPGVRHPFLGDLRKLITEDFVKQKYLEYKKGPQLAAHPEYEFLWGLRACHETSKMRVLRFIAQVGRACVLAASSHTWFVSMPGWDDIQVELLTWDEDGDFGDAWSRIPFAFWARYHQYILNSNRANRRGTWRAGVSSGTNGAASASMLDGPSTSSTIRTQKRSRFAFWPDYHQYILNSNRANRRMLPGGLCQQSHQSAGQRQLMLDGPAPAPTHSGPRGETAARTSASFFSWISVRLEPHYTGPLGGWRWGGAGRISLAGRPGVSWGNE", "length": 790 }, "evidence": [ { "id": "F1RUI9", "url": "https://omabrowser.org/oma/group/F1RUI9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96JG8-1", "protein_name": "Melanoma-associated antigen D4", "gene_name": "MAGED4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEGSFSVQSESYSVEDMDEGSDEVGEEEMVEGNDYEEFGAFGGYGTLTSFDIHILRAFGSLGPGLRILSNEPWELENPVLAQTLVEALQLDPETLANETAARAANVARAAASNRAARAAAAAARTAFSQVVASHRVATPQVSGEDTQPTTYAAEAQGPTPEPPLASPQTSQMLVTSKMAAPEAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPAGVSGMAFPRPKRPAPAQEAATEGPSAASGVPQTGPGREVAATRPKTTKSGKALAKTRWVEPQNVVAAAAAKAKMATSIPEPEGAAAATAQHSAEPWARMGGKRTKKSKHLDDEYESSEEERETPAVPPTWRASQPSLTVRAQLAPRPPMAPRSQIPSRHVLCLPPRNVTLLQERANKLVKYLMIKDYKKIPIKRADMLKDVIREYDEHFPEIIERATYTLEKKFGIHLKEIDKEEHLYILVCTRDSSARLLGKTKDTPRLSLLLVILGVIFMNGNRASEAVLWEALRKMGLRPGVRHPFLGDLRKLITDDFVKQKYLEYKKIPNSNPPEYEFLWGLRARHETSKMRVLRFIAQNQNRDPREWKAHFLEAVDDAFKTMDVDMAEEHARAQMRAQMNIGDEALIGRWSWDDIQVELLTWDEDGDFGDAWARIPFAFWARYHQYILNSNRANRRATWRAGVSSGTNGGASTSVLDGPSTSSTIRTRNAARAGASFFSWIQHR", "length": 741 }, "evidence": [ { "id": "F1RUI9", "url": "https://omabrowser.org/oma/group/F1RUI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1RUI9", "url": "https://www.uniprot.org/uniprotkb/F1RUI9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RUI9", "url": "https://www.uniprot.org/uniprotkb/F1RUI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RUI9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 742, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RUI9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RUI9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RUI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUI9" }, { "id": "PS50838", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50838" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAGE", "eco_id": "ECO_0000259", "start_pos": 416, "end_pos": 614, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 382 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 569, "end_pos": 571 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RU80-1", "uniprot_ac": "F1RU80", "uniprot_id": "F1RU80_PIG", "mass": { "chemical_mass": 88847.0, "monoisotopic_mass": 88847.0 }, "refseq": { "ac": "XP_013841836", "name": "LON peptidase N-terminal domain and RING finger protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841836" }, "gene_names": [ { "name": "LONRF3", "type": "recommended", "evidence": [ { "id": "F1RU80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU80" } ] }, { "name": "LONRF3", "type": "synonym", "evidence": [ { "id": "XP_013841836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841836" } ] } ], "protein_names": [ { "name": "LON peptidase N-terminal domain and RING finger protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013841836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841836" } ] }, { "name": "LON peptidase N-terminal domain and ring finger 3", "type": "synonym", "evidence": [ { "id": "F1RU80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU80/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU80", "url": "https://www.uniprot.org/uniprotkb/F1RU80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LONRF3", "url": "https://www.uniprot.org/uniprotkb/F1RU80", "locus": { "chromosome": "X", "start_pos": 97534185, "end_pos": 97494328, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012631", "url": "https://www.ensembl.org/id/ENSSSCG00000012631" } ] } } ], "crossref": [ { "id": "F1RU80", "url": "https://alphafold.ebi.ac.uk/entry/F1RU80", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012631", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012631", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16513", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16513", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16514", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16514", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517799", "url": "https://www.ncbi.nlm.nih.gov/gene/100517799", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517799", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517799", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLMPHWS", "url": "https://omabrowser.org/oma/group/RLMPHWS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RU80", "url": "https://www.orthodb.org/?gene=F1RU80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "K7GLC4", "url": "https://www.orthodb.org/?gene=K7GLC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23327", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23327", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23327:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23327:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013841836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841836", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5K1VF64", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VF64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1VF64-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VF64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU80", "url": "https://www.uniprot.org/uniprotkb/F1RU80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU80-1", "url": "https://www.uniprot.org/uniprotkb/F1RU80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLC4", "url": "https://www.uniprot.org/uniprotkb/K7GLC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GLC4-1", "url": "https://www.uniprot.org/uniprotkb/K7GLC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSFQTGQMLSLPAELGSNNLELAEPAASAARGDTGPHPEAAREGPAPLPTRPPGQEQPPRASTPECKVLLKQADALASGGRLREALEVYRQLSERQQLVAEQLEQLVRCLAENVPRGEAPEPPDGSLAVSCAVAAEDAGVATAAEATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQAPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARAEAQRLLLSFFSPSFPGDSQKHSPDILKLLAPHPRLKEQVESMATEGTSHNLPKSSQETPELPHCSSQEAAAARGDLAKVQGHGQQSDMEDQDGVEEEEKADAACPQAASSKTGKCQEKKRKHCQVEPQDPEVPNKAAKPDPPADPGATPALSVPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYEQASSWFHSLKSSLKNRILNHFGPMPEKDADPQINPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN", "length": 804, "header": "tr|F1RU80-1|F1RU80_PIG Isoform 1 of LON peptidase N-terminal domain and ring finger 3 OS=Sus scrofa OX=9823 GN=LONRF3 PE=4 SV=4 CANONICAL=F1RU80-1" }, "isoforms": [ { "isoform_ac": "A0A5K1VF64-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VF64/entry", "sequence": { "sequence": "MDSFQTGQMLSLPAELGSNNLELAEPAASAARGDTGPHPEAAREGPAPLPTRPPGQEQPPRASTPECKVLLKQADALASGGRLREALEVYRQLSERQQLVAEQLEQLVRCLAENVPRGEAPEPPDGSLAVSCAVAAEDAGVATAAEATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQAPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKETPELPHCSSQEAAAARGDLAKVQGHGQQSDMEDQDGVEEEEKADAACPQAASSKTGKCQEKKRKHCQVEPQDPEVPNKAAKPDPPADPGATPALSVPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYEQASSWFHSLKSSLKNRILNHFGPMPEKDADPQINPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN", "length": 711, "header": "tr|A0A5K1VF64-1|F1RU80_PIG Computationally mapped isoform of LON peptidase N-terminal domain and ring finger 3 OS=Sus scrofa OX=9823 GN=LONRF3 PE=4 SV=1 CANONICAL=F1RU80-1" }, "locus": { "chromosome": "X", "start_pos": 97529254, "end_pos": 97494463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035094.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035094.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028500.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028500.3" } ] } }, { "isoform_ac": "F1RU80-1", "url": "https://www.uniprot.org/uniprotkb/F1RU80/entry", "sequence": { "sequence": "MDSFQTGQMLSLPAELGSNNLELAEPAASAARGDTGPHPEAAREGPAPLPTRPPGQEQPPRASTPECKVLLKQADALASGGRLREALEVYRQLSERQQLVAEQLEQLVRCLAENVPRGEAPEPPDGSLAVSCAVAAEDAGVATAAEATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQAPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARAEAQRLLLSFFSPSFPGDSQKHSPDILKLLAPHPRLKEQVESMATEGTSHNLPKSSQETPELPHCSSQEAAAARGDLAKVQGHGQQSDMEDQDGVEEEEKADAACPQAASSKTGKCQEKKRKHCQVEPQDPEVPNKAAKPDPPADPGATPALSVPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYEQASSWFHSLKSSLKNRILNHFGPMPEKDADPQINPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN", "length": 804, "header": "tr|F1RU80-1|F1RU80_PIG Isoform 1 of LON peptidase N-terminal domain and ring finger 3 OS=Sus scrofa OX=9823 GN=LONRF3 PE=4 SV=4 CANONICAL=F1RU80-1" }, "locus": { "chromosome": "X", "start_pos": 97529254, "end_pos": 97494463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013812.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013812.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013431.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013431.4" } ] } }, { "isoform_ac": "K7GLC4-1", "url": "https://www.uniprot.org/uniprotkb/K7GLC4/entry", "sequence": { "sequence": "MDSFQTGQMLSLPAELGSNNLELAEPAASAARGDTGPHPEAAREGPAPLPTRPPGQEQPPRASTPECKVLLKQADALASGGRLREALEVYRQLSERQQLVAEQLEQLVRCLAENVPRGEAPEPPDGSLAVSCAVAAEDAGVATAAEATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQAPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARAEAQRETPELPHCSSQEAAAARGDLAKVQGHGQQSDMEDQDGVEEEEKADAACPQAASSKTGKCQEKKRKHCQVEPQDPEVPNKAAKPDPPADPGATPALSVPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYEQASSWFHSLKSSLKNRILNHFGPMPEKDADPQINPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN", "length": 752, "header": "tr|K7GLC4-1|F1RU80_PIG Computationally mapped isoform of LON peptidase N-terminal domain and ring finger 3 OS=Sus scrofa OX=9823 GN=LONRF3 PE=4 SV=1 CANONICAL=F1RU80-1" }, "locus": { "chromosome": "X", "start_pos": 97529254, "end_pos": 97494463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033278.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033278.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028653.1", "url": "https://www.ensembl.org/id/ENSSSCP00000028653.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 495, "start_aa": "Thr", "end_pos": 495, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr495", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GLC4", "url": "https://www.uniprot.org/uniprotkb/K7GLC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517799", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517799", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K884-1", "protein_name": "LON peptidase N-terminal domain and ring finger 3", "gene_name": "Lonrf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSLQTAQMVSLSAELGSNNLELAEPEEPAASMAVGESAAHSEKVTPEGSQPPGAQEPEQSQPLAASTPPECKVLLTQADALASRGHLREALEVYRQLSERQQLVAEQLEQLVRCLADSIPQDELMAPAPADPSATSSCCAAALKKAGEAAAVAPEVWDGFKCRKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLSALMVASGRARGPRRSGPQAPLQLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVKEALREFLYCVSLDGKNKRARSEAQRLLFSFFSPSVPGESQEHSPDILKLLAPHPRLKEHVESMATEGTSHNLPKLSQENSELPHCSNQEGAAAREESSSLVNMAQGKVSRKEDRAKSQEEEEQDAASVRTGKCLEKKRNRCQIETQEDTELPNKVSKQDLPAEQGAKPDLSIPLGSFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNVIMEELIAKFLPEELKERRRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTKQFGMCLGDPVKGFAEYGCILEIRNVQFFSDGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGDDCAELVGLHNCVYEQASSWFHSLKTSLKNRILNHFGPMPEKDEDPQVNPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRILAFISRNQN", "length": 809 }, "evidence": [ { "id": "F1RU80", "url": "https://omabrowser.org/oma/group/F1RU80/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A3Q1MB86-1", "protein_name": "LON peptidase N-terminal domain and ring finger 3", "gene_name": "LONRF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSFQAGQMLSLPAELGSNNLELEEPAASAARGDTGPHPEAAAEGPAPLPTRPPEQEQPPRASTPECKVLLTQADALASGGRLREALEVYRQLSERQQLVAEQLEQLVRCLAENVPQAEEPAPEPPDGSRAGSCALAAEEAGAVTAAEATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVTTGRARGTRRAGQQAPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGRNKRARAEAQRETPERPHCSSQEGAAARGQGGSLMNPVTVTGDGPQDHTEDSVGAEEEKGVAASSQAASIKTGKCQEKKRKHCQIEPQDPERPNKASKPDPSTDPRARPALSVPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHSCVYEQASSWFHSLKSSLKNRILSHFGPMPEKDADPQINPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN", "length": 759 }, "evidence": [ { "id": "F1RU80", "url": "https://omabrowser.org/oma/group/F1RU80/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q496Y0-1", "protein_name": "LON peptidase N-terminal domain and RING finger protein 3", "gene_name": "LONRF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESVRIEQMLSLPAEVSSDNLESAERGASAAQVDMGPHPKVAAEGPAPLPTREPEQEQSPGTSTPESKVLLTQADALASRGRIREALEVYRQLSERQQLVAEQLEQLVRCLAEKVPQGEALAPAPPDEGSTASGTVAAEETGAAAAAAATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRARGARRAGQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARCEAQRDNLELPHCSSQEEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEEEKWDATSPKAASSKTGKCQEKKRKHCQIESQEETGMPNKASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYQQASLWFHSLKLSLKNRILNHFGPMPEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN", "length": 759 }, "evidence": [ { "id": "F1RU80", "url": "https://omabrowser.org/oma/group/F1RU80/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D4H7-1", "protein_name": "LON peptidase N-terminal domain and RING finger protein 3", "gene_name": "Lonrf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSLQTAQMVSLSAELGSNNLELAEPEEPGTSAAAGQSAAHPEEVTPEGSQALGAQEPEQSLPLAVPTPLECKVLLTQADALASEGHLREALEVYRQLSERQQLVAEQLEQLVRCLADSVPQEELASDSSGTSSCCAAALKEAGEAAAVAPEVWDGFKCKKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLSALMAASGRARGPRRAGQPAPLQLRVNVVLSGLLGKLFPGPARASQLRHEGNRLFREHQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVKEALKEFLYCVSLDGKNKSARSEAQRENLELPHCSNQEGAAAAEESSSLANSAQGKVSSKEDRKKDQEGEDRDAASVRTGKCQEKKRNRCQIETQEDTELPNKVSKQDFPAEQGAKPDLSNPLGSFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNVILEELIATFLPEEFKERKRLYEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFVEYGCILEIRNVQFFSDGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGDDCAELMGLHNCVYEQASSWFHSLKASLKNRILNHFGPMPEKDEDPQVNPNGPAWCWWTLAVLPLESRAQLPFLAMRSLKDRLNGIRRILAFISRNQN", "length": 753 }, "evidence": [ { "id": "F1RU80", "url": "https://omabrowser.org/oma/group/F1RU80/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RU80", "url": "https://www.uniprot.org/uniprotkb/F1RU80" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RU80", "url": "https://www.uniprot.org/uniprotkb/F1RU80" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1RU80", "url": "https://www.uniprot.org/uniprotkb/F1RU80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RU80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 804, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RU80-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RU80" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RU80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU80" }, { "id": "PS51787", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51787" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lon N-terminal", "eco_id": "ECO_0000259", "start_pos": 591, "end_pos": 800, "start_aa": "Met", "end_aa": "Ser", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXK8-1", "uniprot_ac": "F1RXK8", "uniprot_id": "F1RXK8_PIG", "mass": { "chemical_mass": 47107.0, "monoisotopic_mass": 47107.0 }, "refseq": { "ac": "XP_003135343", "name": "RNA-binding protein 41 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135343" }, "gene_names": [ { "name": "RBM41", "type": "recommended", "evidence": [ { "id": "F1RXK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXK8" } ] }, { "name": "RBM41", "type": "synonym", "evidence": [ { "id": "XP_003135343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135343" } ] } ], "protein_names": [ { "name": "RNA-binding protein 41", "type": "recommended", "evidence": [ { "id": "F1RXK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXK8/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 41", "type": "synonym", "evidence": [ { "id": "F1RXK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXK8/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding protein 41 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003135343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135343" } ] } ], "function": [ { "annotation": "May bind RNA.", "evidence": [ { "database": "UniProtKB", "id": "F1RXK8", "url": "https://www.uniprot.org/uniprotkb/F1RXK8#function" }, { "database": "UniProtKB", "id": "ARBA00056959", "url": "https://www.uniprot.org/uniprotkb/ARBA00056959#function" }, { "database": "UniProtKB", "id": "A0A287A5S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5S5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXK8", "url": 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"https://www.orthodb.org/?gene=F1RXK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16105:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16105:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003135343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A5S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5S5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NBK2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NBK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0NBK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NBK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXK8", "url": "https://www.uniprot.org/uniprotkb/F1RXK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RXK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKESFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQNRLQDIEERISERQRILCLPQRFAKSKQLTRREMEIENSLFQGADRHSFLKALYYQDEPQKKNKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSAPSVGDSGTAENPSLLQDKGKQAAQGKGPSLHVAKVIDNSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTEKDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILVIEFGKNKKQRSDLQAVSLISTTDNTTEISGS", "length": 412, "header": "tr|F1RXK8-1|F1RXK8_PIG Isoform 1 of RNA-binding protein 41 OS=Sus scrofa OX=9823 GN=RBM41 PE=4 SV=3 CANONICAL=F1RXK8-1" }, "isoforms": [ { "isoform_ac": "A0A287A5S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5S5/entry", "sequence": { "sequence": "MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKESFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQNRLQDIEERISERQRILCLPQRFAKSKQLTRREMEIENSLFQGADRHSFLKALYYQAYHKKTSADKYMTSMKRKIKLGTKDEPQKKNKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSAPSVGDSGTAENPSLLQDKGKQAAQGKGPSLHVAKVIDNSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTEKDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILVIEFGKNKKQRSDLQAVSLISTTDNTTEISGS", "length": 436, "header": "tr|A0A287A5S5-1|A0A287A5S5_PIG Computationally mapped isoform of RNA-binding protein 41 OS=Sus scrofa OX=9823 GN=RBM41 PE=4 SV=1 CANONICAL=F1RXK8-1" }, "locus": { "chromosome": "X", "start_pos": 87575038, "end_pos": 87517856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036760.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036760.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039216.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039216.1" } ] } }, { "isoform_ac": "A0A8D0NBK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NBK2/entry", "sequence": { "sequence": "MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKESFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQNRLQDIEERISERQRILCLPQRFAKSKQLTRREMEIENSLFQGADRHSFLKALYYQAYHKKTSADKYMTSMKRKIKLGTKETAKPFSRVAEPFCILTSNV", "length": 218, "header": "tr|A0A8D0NBK2-1|F1RXK8_PIG Computationally mapped isoform of RNA-binding protein 41 OS=Sus scrofa OX=9823 GN=RBM41 PE=4 SV=1 CANONICAL=F1RXK8-1" }, "locus": { "chromosome": "X", "start_pos": 87575038, "end_pos": 87567032, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076737.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076737.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063456.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063456.1" } ] } }, { "isoform_ac": "F1RXK8-1", "url": "https://www.uniprot.org/uniprotkb/F1RXK8/entry", "sequence": { "sequence": "MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKESFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQNRLQDIEERISERQRILCLPQRFAKSKQLTRREMEIENSLFQGADRHSFLKALYYQDEPQKKNKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSAPSVGDSGTAENPSLLQDKGKQAAQGKGPSLHVAKVIDNSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTEKDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALRLVNGYKLRGKILVIEFGKNKKQRSDLQAVSLISTTDNTTEISGS", "length": 412, "header": "tr|F1RXK8-1|F1RXK8_PIG Isoform 1 of RNA-binding protein 41 OS=Sus scrofa OX=9823 GN=RBM41 PE=4 SV=3 CANONICAL=F1RXK8-1" }, "locus": { "chromosome": "X", "start_pos": 87575038, "end_pos": 87517856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013728.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013728.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013350.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013350.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0NBK2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0NBK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516772", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516772", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9U058-1", "protein_name": "RNA-binding protein 41", "gene_name": "RBM41", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKESFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRARLRATPEAIQNRLQDIEERISERQRILCLPQRFAKSKQLTRREMEIENSLFQGADRHSFLKALYYQDEPQKKNKGDPMNKLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSATSVGDSGTAENPSLLQDKGKQAAQGKGPSLHVAKVIDNSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNTEIAWQALRLVNGYKLRGKILVIEFGKNKKQRPDLQAASLISSTTDNTTEISGS", "length": 413 }, "evidence": [ { "id": "F1RXK8", "url": "https://omabrowser.org/oma/group/F1RXK8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZTA4-1", "protein_name": "RNA-binding protein 41", "gene_name": "Rbm41", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKRVNSCVKDEEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKKSFAPGTMYKPFGKEVAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQKRLEDIKERISERQRILCLPQRFSKSKQLTRREMEIEKSLFQGTDRHSFLKALYYQDEPPKKNKGDPMNNLESFYHETIMKKRLEEFQLLRGEPFPSHSLASAASVSDSGTAESPSLLQDKGKQAAQGKGPSLHVAKVIDFPPEQCWTGPKKLKQPIEFIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLISLFARFQEKKGPLIQFQMMTGRMRGQAFITFPNKDIAWQALHQINGYKLYGKILVIEFAKSRKQQSAAQCAPLIASATDGRAEINGS", "length": 413 }, "evidence": [ { "id": "F1RXK8", "url": "https://omabrowser.org/oma/group/F1RXK8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8JZV4-1", "protein_name": "RNA-binding protein 41", "gene_name": "Rbm41", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRVNSCVKDEEHVLEELETEGERQLKSLLQHQLDTSVSIEECVSKKKSFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKRTKLRATPEAIQKRLEDIKERISERQRILCLPQRFSKSKQLTRREMEIEKSLFQGTDRHSFLKALYYQDEPPKKNKGDPMNNLEHFYRETIMKKRLEEFQLLRGESFACHSLVSAASVSGSGTAEKPSLLQDKGKQAAQGKGPRLHVAKLIDFPTEQYWTGPKTLKQPIEFIPEDEIQRNRLSEEEIRNIPMFSSYNPGEPNKVLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQALHQINGYKLYGKILVIEFAKSKKQQSAVQRSSLITSAPDGRTEINGS", "length": 413 }, "evidence": [ { "id": "F1RXK8", "url": "https://omabrowser.org/oma/group/F1RXK8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96IZ5-1", "protein_name": "RNA-binding protein 41", "gene_name": "RBM41", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECMSKKESFAPGTMYKPFGKEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKKTKLRATPEAIQNRLQDIEERISERQRILCLPQRFAKSKQLTRREMEIEKSLFQGADRHSFLKALYYQDEPQKKNKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSATSVGDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLHGKILVIEFGKNKKQRSNLQATSLISCATGSTTEISGS", "length": 413 }, "evidence": [ { "id": "F1RXK8", "url": "https://omabrowser.org/oma/group/F1RXK8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RXK8", "url": "https://www.uniprot.org/uniprotkb/F1RXK8" } ], "pmid": "" }, { "name": "pre-mRNA intronic binding", "id": "GO:0097157", "url": 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"https://www.uniprot.org/uniprotkb/F1RXK8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXK8" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 309, "end_pos": 387, "start_aa": "Lys", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZG7-1", "uniprot_ac": "F1RZG7", "uniprot_id": "F1RZG7_PIG", "mass": { "chemical_mass": 45131.0, "monoisotopic_mass": 45131.0 }, "refseq": {}, "gene_names": [ { "name": "TEX9", "type": "recommended", "evidence": [ { "id": "F1RZG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZG7" } ] } ], "protein_names": [ { "name": "Testis expressed 9", "type": "synonym", "evidence": [ { "id": "F1RZG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZG7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RZG7", "url": "https://www.uniprot.org/uniprotkb/F1RZG7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEX9", "url": "https://www.uniprot.org/uniprotkb/F1RZG7", "locus": { "chromosome": "1", "start_pos": 115526740, "end_pos": 115607894, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004602", "url": "https://www.ensembl.org/id/ENSSSCG00000004602" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004602", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004602", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "QISCEYY", "url": "https://omabrowser.org/oma/group/QISCEYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23313", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23313", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23313:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23313:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "A0A8D0YIR7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0YIR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0YIR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0YIR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZG7", "url": "https://www.uniprot.org/uniprotkb/F1RZG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZG7-1", "url": "https://www.uniprot.org/uniprotkb/F1RZG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPSLSLRRRGVSGTPLPPRVQHSATPRRDFLAKEEEYKRLNAELEAKTADLVRQAEEVIRDQQEVRSRSFPTQIKSYEEEDDNSLRGPLSSEGTVHLHLETKPNNKNVDPLNKVQNKLHSASKGRKTNLSVKLKYSDVRTANDVAIPEDFSDFSLAKTISKIEGQLEEEGLPDYIDDDIFCGVSKDIGSEAQIRFLKAKLRVMQEELDNVVCECNKKEDEIQDLKSQLKNFEEDCVKQQRTINLQQSQIEKYKTLFEEANQKCDGLQQQLSSVERELENKRRLQKQAATSQSAMEVRLNRALEEAEKYKLELSKLKQNNKDIANEEHKKIEVLKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAARMLSFTEEEFMKALEWGNG", "length": 392, "header": "tr|F1RZG7-1|F1RZG7_PIG Isoform 1 of Testis expressed 9 OS=Sus scrofa OX=9823 GN=TEX9 PE=4 SV=1 CANONICAL=F1RZG7-1" }, "isoforms": [ { "isoform_ac": "A0A8D0YIR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0YIR7/entry", "sequence": { "sequence": "MQEELDNVVCECNKKEDEIQDLKSQLKNFEEDCVKQQRTINLQQSQIEKYKTLFEEANQKCDGLQQQLSSVERELENKRRLQKQAATSQSAMEVRLNRALEEAEKYKLELSKLKQNNKMHIEAARMLSFTEEEFMKALEWGNG", "length": 143, "header": "tr|A0A8D0YIR7-1|F1RZG7_PIG Computationally mapped isoform of Testis expressed 9 OS=Sus scrofa OX=9823 GN=TEX9 PE=4 SV=1 CANONICAL=F1RZG7-1" }, "locus": { "chromosome": "1", "start_pos": 115576291, "end_pos": 115526964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094004.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094004.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080272.1" } ] } }, { "isoform_ac": "F1RZG7-1", "url": "https://www.uniprot.org/uniprotkb/F1RZG7/entry", "sequence": { "sequence": "MAGPSLSLRRRGVSGTPLPPRVQHSATPRRDFLAKEEEYKRLNAELEAKTADLVRQAEEVIRDQQEVRSRSFPTQIKSYEEEDDNSLRGPLSSEGTVHLHLETKPNNKNVDPLNKVQNKLHSASKGRKTNLSVKLKYSDVRTANDVAIPEDFSDFSLAKTISKIEGQLEEEGLPDYIDDDIFCGVSKDIGSEAQIRFLKAKLRVMQEELDNVVCECNKKEDEIQDLKSQLKNFEEDCVKQQRTINLQQSQIEKYKTLFEEANQKCDGLQQQLSSVERELENKRRLQKQAATSQSAMEVRLNRALEEAEKYKLELSKLKQNNKDIANEEHKKIEVLKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAARMLSFTEEEFMKALEWGNG", "length": 392, "header": "tr|F1RZG7-1|F1RZG7_PIG Isoform 1 of Testis expressed 9 OS=Sus scrofa OX=9823 GN=TEX9 PE=4 SV=1 CANONICAL=F1RZG7-1" }, "locus": { "chromosome": "1", "start_pos": 115607874, "end_pos": 115526964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005083.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005083.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004959.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004959.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0YIR7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0YIR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K5Y3-1", "protein_name": "Testis expressed 9", "gene_name": "Tex9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQKAGLGGDRKVCPLARGCPRPENSRGKMCCYHGNRIAPGQVKMAGRSVGVPRRGAAGPQSRGQLAAGRDLLAREQEYKRLNAELEAKTANLVRQAEEVIREQQEERARPFSALTTSCKEEDGYGPRDLLSSEGMAHPWSETKPKTKNTGPVNKIQNRLHSADKERKINSSVKLKYPDVQTANDVAIPDDFSDFSLAKTISRIEGQLEEDVLPECADDDSFCGVSKDIGTEAQIRFLKAKLHVMQEELDSVVCECNKKEDEIQDLKSKVKNLEEDCVRQQRTVTSQQTQIEKYRNLFEEANKRCDELQQQLSSVDRELENKRRLQKQAATSQSATEVRLNRALEEAEKYKAELSKLRQTNKDITNEDHQKIEVLKSENKKLERQKGELMIGFKKQLKLIDILKRQKMHIEAAKMLSFSEEEFMKALEWGSS", "length": 431 }, "evidence": [ { "id": "F1RZG7", "url": "https://omabrowser.org/oma/group/F1RZG7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZV69-1", "protein_name": "Testis expressed 9", "gene_name": "TEX9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPQTASLLSRPNGRQPSDTLGPQARGPSPRPRAAGFAGGLPHGAREGTRDQSLHFLHLAATSETWPPLETQRRQEMLAKAYGPRRGEKKAVPRPTAAEGTGDERGRPVAGEKATPRGSPRANKMATGGSGGGLSRVCKAPGGPSVPAGSGAVSGELLAREERYKRLNAELEAKREKLMRQTEEVMKSQQETLSRPISVQTKYCEDDKQRDPLCFKVSSLTHSHTKPSNKKKCASASMAQNRTYSGNKGKIITSSSEINLETQNADGVAVLEDCTGFSLAKTVSEIEGKLEKGGLPDCLDDDIIPNTASEIGAEAQMRFLKAKLRVMQEELDSIMCECRKKDDENQNLKSQLKDSEEESTRLQRKISVQQSQTEKYKMLSQAASKKCEGLQQEVVALKKELENLKRAQKQAASSQSATEVRLNRALEEAERYKAELNKLKQSNKDVANQELKIIEELKAENKKLQKQKGELIAGFKKQLKLIDILKRQKMHIEAARMLSFTEEEFMKALEWGND", "length": 514 }, "evidence": [ { "id": "F1RZG7", "url": "https://omabrowser.org/oma/group/F1RZG7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TJ31-1", "protein_name": "Testis expressed 9", "gene_name": "TEX9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQPHPVTRGKESLPCGGPKPVTDCFGDTKPLLKRPGVSGTLLPPRIQQPATPRRDLLAKEEEYKRLNAELEAKTADLVRQAEEVIRDQQEVRSKSVSAQIKSYEDKDDYSFRRPLSEGTVHLHSETKPKTKNVDPINKVQNKLYSASKGRKSSVKLKYSHVQTASDVAIPEDFSDFSLAKTISKIEGQLEEEGLPDFINDDIFSGVSEDIGTEAQIRFLKAKLRVMQEELDNVVCERNKTEDEVQDLKSQLKNFEEDCVRQQRTINLQQSQTEKFKTLFEEANKKCDGLQQQLSSVERELENKRRLQKQAVASQSAMEVRLNRALEEAEKYKLELSKLRQNNKDIANEEHQKIEALKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAAKMLSFTEEEFMKALEWGN", "length": 412 }, "evidence": [ { "id": "F1RZG7", "url": "https://omabrowser.org/oma/group/F1RZG7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1QU49-1", "protein_name": "Testis-expressed protein 9", "gene_name": "tex9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADSTPRPALRPFKKPQTSYSERPSSTNLQSRTSSAPLKKPPQMDLLAKEEEYKRLNAKLEAKTAEIVRDAEKIMRDQNEVLSKPIFTCISIDSDSDLEVPGKPDVKKEPTSKQPTMMIMKNKSISAKSSKPSKPSSGNRKIQQKAPQTAVDDVAIPEDFGDFSLAKTISKIEDRVGDDLTEEHLQDDIMPSAGDEMGAEAQIRFLKAKLRVMQEELNRLSYACNKKDDENSTLTSKLKDLEEERARLQRTTNIQQTQVEKQKALAEESSRKSEGLQQQMAALQKELESMKRTFKQAASTHSATEVRLNRALEEAEKTKTQLNKLKQSTKDLSSQEHQKIEALQAENRKLERQKAELIVGFKKQLKLIDILKRQKMHYEAAKLLSFTEEEFMKALDWGKEVL", "length": 402 }, "evidence": [ { "id": "F1RZG7", "url": "https://omabrowser.org/oma/group/F1RZG7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N6V9-1", "protein_name": "Testis-expressed protein 9", "gene_name": "TEX9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGRSLCLTRSSVPGTPFPPPVQQPSTPGPDLLALEEEYKRLNAELQAKTADVVQQAKEIIRDRQEVRSRPVSTQMKSCDDEDDYSLRGLLPSEGIVHLHSETKPKTKNIDPVNKVQNKLHSANKGRKTNSSVKLKYSDVQTADDVAIPEDFSDFSLAKTISKIEGQLEEEGLPEYIDDIFSGVSNDIGTEAQIRFLKAKLHVMQEELDNVVCECNKKEDEIQNLKSQVKNFEEDFMRQQRTINMQQSQVEKYKTLFEEANKKYDGLQQQLSSVERELENKRRLQKQAASSQSATEVRLNRALEEAEKYKLELSKLRQNNKDIANEEHKKIEVLKSENKKLEKQKGELMIGFKKQLKLIDVLKRQKMHIEAAKMLSFTEEEFMKALEWGNS", "length": 391 }, "evidence": [ { "id": "F1RZG7", "url": "https://omabrowser.org/oma/group/F1RZG7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D845-1", "protein_name": "Testis-expressed protein 9", "gene_name": "Tex9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGRSVRVPRRGSAGTQSRGQLAAGRDLLAREQEYKRLNEELEAKTADLVRQAEEVIREQQEVRARPFSALTTSCKEEGGSSSRDLLSSEGTHPWTETKPKTKNTGPVNKIQNRLHSADKERKTNSSAKLKYPDAQTANDVAIPDDFSDFSLAKTISRIEGQLDEDGLPECAEDDSFCGVSKDIGTEAQIRFLKAKLHVMQEELDSVVCECSKKEDKIQDLKSKVKNLEEDCVRQQRTVTSQQSQIEKYKNLFEEANKKCDELQQQLSSVERELESKRRLQKQAASSQSATEVRLNRALEEAEKYKVELSKLRQTNKDITNEDHQKIEVLKSENKKLERQKGELMIGFKKQLKLIDILKRQKMHIEAAKMLSFSEEEFMKALEWGSS", "length": 387 }, "evidence": [ { "id": "F1RZG7", "url": "https://omabrowser.org/oma/group/F1RZG7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "F1RZG7", "url": "https://www.uniprot.org/uniprotkb/F1RZG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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polarity protein 4 OS=Sus scrofa OX=9823 GN=PRICKLE4 PE=4 SV=4 CANONICAL=F1RUW4-1" }, "isoforms": [ { "isoform_ac": "A0A8D1KIL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1KIL3/entry", "sequence": { "sequence": "RHYDFEHEKGKWSSCYGSVDPEILHLGHPDLDTSQTPSWPGLRTLLQQLPPQDSDERYCLTLEEEELAELRLFCAWRRREALGQGVARLVPPKLEECTCEKCREPLRPGEYGVFAARAGEQCCWHPACFACQACGQALINLIYFYHDGHLYCGRHHAELLRPRCPACDQLIFSRRCTEAEGRRWHENHFCCQDCAGPLGGGLYALPGGDPCCPSCFESRYSDAGSRPAGTQEGRASLGEAELGRGEDPDSYLRKSASISRAALLATGDNSSVETQTEMLGSSPEQECQAGNKAEAPKGQEQSLLETPLDPKEDAPCPTCSSSSESEPEGFFLGQRLPRPWETPRSLQAGDSDTSRKHCTIC", "length": 361, "header": "tr|A0A8D1KIL3-1|F1RUW4_PIG Computationally mapped isoform of Prickle planar cell polarity protein 4 OS=Sus scrofa OX=9823 GN=PRICKLE4 PE=4 SV=1 CANONICAL=F1RUW4-1" }, "locus": { "chromosome": "7", "start_pos": 36976179, "end_pos": 36972717, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062108.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062108.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054807.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054807.3" } ] } }, { "isoform_ac": "F1RUW4-1", "url": "https://www.uniprot.org/uniprotkb/F1RUW4/entry", "sequence": { "sequence": "MSLLNSGWPHPGERPTPLEPNPPVNPDSNPGQRPEEDPEEASAQDPEILHLGHPDLDTSQTPSWPGLRTLLQQLPPQDSDERYCLTLEEEELAELRLFCAWRRREALGQGVARLVPPKLEECTCEKCREPLRPGEYGVFAARAGEQCCWHPACFACQACGQALINLIYFYHDGHLYCGRHHAELLRPRCPACDQLIFSRRCTEAEGRRWHENHFCCQDCAGPLGGGLYALPGGDPCCPSCFESRYSDAGSRPAGTQEGRASLGEAELGRGEDPDSYLRKSASISRAALLATGDNSSVETQTEMLGSSPEQECQAGNKAEAPKGQEQSLLETPLDPKEDAPCPTCSSSSESEPEGFFLGQRLPRPWETPRSLQAGDSDTSRKHCTIC", "length": 386, "header": "tr|F1RUW4-1|F1RUW4_PIG Isoform 1 of Prickle planar cell polarity protein 4 OS=Sus scrofa OX=9823 GN=PRICKLE4 PE=4 SV=4 CANONICAL=F1RUW4-1" }, "locus": { "chromosome": "7", "start_pos": 36976179, "end_pos": 36972348, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001810.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001810.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001764.5", "url": "https://www.ensembl.org/id/ENSSSCP00000001764.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 343, "start_aa": "Thr", "end_pos": 343, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr343", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to 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{ "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RUW4", "url": "https://www.uniprot.org/uniprotkb/F1RUW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RUW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 386, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RUW4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RUW4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RUW4", "database": "UniProtKB", "url": 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"database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020944653", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944653", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4F907", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F907", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F907-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F907-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJY6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK47", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK47-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK47-1", "database": "UniProtKB", 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"MPYEVNAGYDFTNMVRKKNPPLRNIASEGEGQTLEPIGTESKVSGKNKEFSADQMSENTDQSDAAELNNKEEQSLHVQDPSSSSKKDLKSSVLSEKAGFNYESPGKGGSLPSYPHDEVTDRNMLAFLSPAAGGVCEPLKSPQRAEADDPQDMACTPAGDSLETKEDPKMSPKATEETGQAQSGQANCQGSSPVSVASKNPQVPSDGGVRLNKSKTDLLVNDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHSKDFQKVNRSVLSGVLQDINSSRPVLLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTELEQHFLQTHPNKIKTSLPSSEGAKPSEKNSNKSIPALRSSDSGDLGKWQDKITVKAGDDTPVGYSVPIKPLDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYSKQHGGTQSGSLNPELNDKLSRGSVINQNDLAKSAEGEPMAKAEKGSSGAKKKDFASKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGAAGSSRVKHQCHQCSFSTPDVDVLLFHYESAHDAQASDVKQEGNHLQGSDGQQAVKESKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAAETQSLLEHFNTVHCQEQDITTANGEEDSHAVSTIKEEPKMDLKVYSLLNPDSKMGEPVSESVVKREKLEDKDGLKEKAWAESSSDDLRSVTWRGADILRGSPSYTQASLGLLTPVSGPQEPTKTLRDSPSVEAAHLARPLYSLAVETKGFLQGVPAGGEKAGAVSQQYPASGESKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGGSEEQVNGSPLERRSEDHLTEGHQREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLDIHKRMQPLHIQIKSPQESTGDPGNSSSVSEGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGLPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTANGASKEKTKAPSNVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMSCHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQAEKNGKPKE", "length": 1294, "header": "tr|F1S1J7-1|F1S1J7_PIG Isoform 1 of Zinc finger transcription factor Trps1 OS=Sus scrofa OX=9823 GN=TRPS1 PE=4 SV=5 CANONICAL=F1S1J7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F907-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F907/entry", "sequence": { "sequence": "MGMGIPKWEYRIPYIELQMPVHYNANFWVLRILYFILPVTLQEIKFKRAHSCYKCRQCSFTAAETQSLLEHFNTVHCQEQDITTANGEEDSHAVSTIKEEPKMDLKVYSLLNPDSKMGEPVSESVVKREKLEDKDGLKEKAWAESSSDDLRSVTWRGADILRGSPSYTQASLGLLTPVSGPQEPTKTLRDSPSVEAAHLARPLYSLAVETKGFLQGVPAGGEKAGAVSQQYPASGESKSKDESQSLLRVGRFHFFSNSSLLKGKWGWGTHTHSLELVSYLTKCN", "length": 284, "header": "tr|A0A8W4F907-1|F1S1J7_PIG Computationally mapped isoform of Zinc finger transcription factor Trps1 OS=Sus scrofa OX=9823 GN=TRPS1 PE=4 SV=1 CANONICAL=F1S1J7-1" }, "locus": { "chromosome": "4", "start_pos": 22990395, "end_pos": 22989474, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096001.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096001.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074780.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074780.1" } ] } }, { "isoform_ac": "A0A8W4FJY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY6/entry", "sequence": { "sequence": "MKDMVRKKNPPLRNIASEGEGQTLEPIGTESKVSGKNKEFSADQMSENTDQSDAAELNNKEEQSLHVQDPSSSSKKDLKSSVLSEKAGFNYESPGKGGSLPSYPHDEVTDRNMLAFLSPAAGGVCEPLKSPQRAEADDPQDMACTPAGDSLETKEDPKMSPKATEETGQAQSGQANCQGSSPVSVASKNPQVPSDGGVRLNKSKTDLLVNDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHSKDFQKVNRSVLSGVLQDINSSRPVLLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTELEQHFLQTHPNKIKTSLPSSEGAKPSEKNSNKSIPALRSSDSGDLGKWQDKITVKAGDDTPVGYSVPIKPLDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYSKQHGGTQSGSLNPELNDKLSRGSVINQNDLAKSAEGEPMAKAEKGSSGAKKKDFASKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGAAGSSRVKHQCHQCSFSTPDVDVLLFHYESAHDAQASDVKQEGNHLQGSDGQQAVKESKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAAETQSLLEHFNTVHCQEQDITTANGEEDSHAVSTIKEEPKMDLKVYSLLNPDSKMGEPVSESVVKREKLEDKDGLKEKAWAESSSDDLRSVTWRGADILRGSPSYTQASLGLLTPVSGPQEPTKTLRDSPSVEAAHLARPLYSLAVETKGFLQGVPAGGEKAGAVSQQYPASGESKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGGSEEQVNGSPLERRSEDHLTEGHQREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLDIHKRMQPLHIQIKSPQESTGDPGNSSSVSEGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGLPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTANGASKEKTKAPSNVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMSCHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQAEKNGKPKE", "length": 1284, "header": "tr|A0A8W4FJY6-1|F1S1J7_PIG Computationally mapped isoform of Zinc finger transcription factor Trps1 OS=Sus scrofa OX=9823 GN=TRPS1 PE=4 SV=1 CANONICAL=F1S1J7-1" }, "locus": { "chromosome": "4", "start_pos": 23157287, "end_pos": 22905741, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104576.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104576.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079536.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079536.1" } ] } }, { "isoform_ac": "A0A8W4FK47-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK47/entry", "sequence": { "sequence": "MQSNMVRKKNPPLRNIASEGEGQTLEPIGTESKVSGKNKEFSADQMSENTDQSDAAELNNKEEQSLHVQDPSSSSKKDLKSSVLSEKAGFNYESPGKGGSLPSYPHDEVTDRNMLAFLSPAAGGVCEPLKSPQRAEADDPQDMACTPAGDSLETKEDPKMSPKATEETGQAQSGQANCQGSSPVSVASKNPQVPSDGGVRLNKSKTDLLVNDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHSKDFQKVNRSVLSGVLQDINSSRPVLLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTELEQHFLQTHPNKIKTSLPSSEGAKPSEKNSNKSIPALRSSDSGDLGKWQDKITVKAGDDTPVGYSVPIKPLDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYSKQHGGTQSGSLNPELNDKLSRGSVINQNDLAKSAEGEPMAKAEKGSSGAKKKDFASKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGAAGSSRVKHQCHQCSFSTPDVDVLLFHYESAHDAQASDVKQEGNHLQGSDGQQAVKESKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAAETQSLLEHFNTVHCQEQDITTANGEEDSHAVSTIKEEPKMDLKVYSLLNPDSKMGEPVSESVVKREKLEDKDGLKEKAWAESSSDDLRSVTWRGADILRGSPSYTQASLGLLTPVSGPQEPTKTLRDSPSVEAAHLARPLYSLAVETKGFLQGVPAGGEKAGAVSQQYPASGESKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGGSEEQVNGSPLERRSEDHLTEGHQREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLDIHKRMQPLHIQIKSPQESTGDPGNSSSVSEGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGLPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTANGASKEKTKAPSNVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMSCHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQAEKNGKPKE", "length": 1285, "header": "tr|A0A8W4FK47-1|F1S1J7_PIG Computationally mapped isoform of Zinc finger transcription factor Trps1 OS=Sus scrofa OX=9823 GN=TRPS1 PE=4 SV=1 CANONICAL=F1S1J7-1" }, "locus": { "chromosome": "4", "start_pos": 23157287, "end_pos": 22912133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105188.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105188.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079836.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079836.1" } ] } }, { "isoform_ac": "F1S1J7-1", "url": "https://www.uniprot.org/uniprotkb/F1S1J7/entry", "sequence": { "sequence": "MPYEVNAGYDFTNMVRKKNPPLRNIASEGEGQTLEPIGTESKVSGKNKEFSADQMSENTDQSDAAELNNKEEQSLHVQDPSSSSKKDLKSSVLSEKAGFNYESPGKGGSLPSYPHDEVTDRNMLAFLSPAAGGVCEPLKSPQRAEADDPQDMACTPAGDSLETKEDPKMSPKATEETGQAQSGQANCQGSSPVSVASKNPQVPSDGGVRLNKSKTDLLVNDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHSKDFQKVNRSVLSGVLQDINSSRPVLLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTELEQHFLQTHPNKIKTSLPSSEGAKPSEKNSNKSIPALRSSDSGDLGKWQDKITVKAGDDTPVGYSVPIKPLDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYSKQHGGTQSGSLNPELNDKLSRGSVINQNDLAKSAEGEPMAKAEKGSSGAKKKDFASKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGAAGSSRVKHQCHQCSFSTPDVDVLLFHYESAHDAQASDVKQEGNHLQGSDGQQAVKESKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAAETQSLLEHFNTVHCQEQDITTANGEEDSHAVSTIKEEPKMDLKVYSLLNPDSKMGEPVSESVVKREKLEDKDGLKEKAWAESSSDDLRSVTWRGADILRGSPSYTQASLGLLTPVSGPQEPTKTLRDSPSVEAAHLARPLYSLAVETKGFLQGVPAGGEKAGAVSQQYPASGESKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGGSEEQVNGSPLERRSEDHLTEGHQREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLDIHKRMQPLHIQIKSPQESTGDPGNSSSVSEGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGLPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTANGASKEKTKAPSNVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMSCHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQAEKNGKPKE", "length": 1294, "header": "tr|F1S1J7-1|F1S1J7_PIG Isoform 1 of Zinc finger transcription factor Trps1 OS=Sus scrofa OX=9823 GN=TRPS1 PE=4 SV=5 CANONICAL=F1S1J7-1" }, "locus": { "chromosome": "4", "start_pos": 23157287, "end_pos": 22955096, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006604.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006604.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006428.5", "url": "https://www.ensembl.org/id/ENSSSCP00000006428.5" } ] } }, { "isoform_ac": "I3L800-1", "url": "https://www.uniprot.org/uniprotkb/I3L800/entry", "sequence": { "sequence": "MPYEVNAGYDFTTDMVRKKNPPLRNIASEGEGQTLEPIGTESKVSGKNKEFSADQMSENTDQSDAAELNNKEEQSLHVQDPSSSSKKDLKSSVLSEKAGFNYESPGKGGSLPSYPHDEVTDRNMLAFLSPAAGGVCEPLKSPQRAEADDPQDMACTPAGDSLETKEDPKMSPKATEETGQAQSGQANCQGSSPVSVASKNPQVPSDGGVRLNKSKTDLLVNDNPDPAPLSPELQDFKCNICGYGYYGNDPTDLIKHFRKYHLGLHNRTRQDAELDSKILALHNMVQFSHSKDFQKVNRSVLSGVLQDINSSRPVLLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGNSSTELEQHFLQTHPNKIKTSLPSSEGAKPSEKNSNKSIPALRSSDSGDLGKWQDKITVKAGDDTPVGYSVPIKPLDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYSKQHGGTQSGSLNPELNDKLSRGSVINQNDLAKSAEGEPMAKAEKGSSGAKKKDFASKGAEDNMVTSYNCQFCDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCSHCALLLLHLSPGAAGSSRVKHQCHQCSFSTPDVDVLLFHYESAHDAQASDVKQEGNHLQGSDGQQAVKESKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAAETQSLLEHFNTVHCQEQDITTANGEEDSHAVSTIKEEPKMDLKVYSLLNPDSKMGEPVSESVVKREKLEDKDGLKEKAWAESSSDDLRSVTWRGADILRGSPSYTQASLGLLTPVSGPQEPTKTLRDSPSVEAAHLARPLYSLAVETKGFLQGVPAGGEKAGAVSQQYPASGESKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRGGSEEQVNGSPLERRSEDHLTEGHQREIPLPSLSKYEAQGSLTKSHSAQQPVLVSQTLDIHKRMQPLHIQIKSPQESTGDPGNSSSVSEGKGSSERGSPIEKYMRPAKHPNYSPPGSPIEKYQYPLFGLPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPGLPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTANGASKEKTKAPSNVKNEGPLNVVKTEKVDRSTQDELSTKCVHCGIVFLDEVMYALHMSCHGDSGPFQCSICQHLCTDKYDFTTHIQRGLHRNNAQAEKNGKPKE", "length": 1295, "header": "tr|I3L800-1|I3L800_PIG Computationally mapped isoform of Zinc finger transcription factor Trps1 OS=Sus scrofa OX=9823 GN=TRPS1 PE=4 SV=3 CANONICAL=F1S1J7-1" }, "locus": { "chromosome": "4", "start_pos": 23157287, "end_pos": 22955096, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055503.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055503.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034460.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034460.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F907", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F907" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1S1J7", "url": "https://www.uniprot.org/uniprotkb/F1S1J7" } ], "pmid": "" }, { "name": 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"length": 1006, "header": "tr|A0A8W4FE45-1|F1RXB7_PIG Computationally mapped isoform of Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Sus scrofa OX=9823 GN=LRRCC1 PE=3 SV=1 CANONICAL=F1RXB7-1" }, "locus": { "chromosome": "4", "start_pos": 51570345, "end_pos": 51527039, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100677.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100677.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077691.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077691.1" } ] } }, { "isoform_ac": "F1RXB7-1", "url": "https://www.uniprot.org/uniprotkb/F1RXB7/entry", "sequence": { "sequence": "MEAPVEAEVENEDGDSSCGDLCFMDKGLRSISELSLDSALHAINLHCNNISKIKAIDHVWNLRHLDLSSNQINQIEGLNTLTKLSTLNLSCNLITRIEGLEALTNLTRLNLSYNHINDLSGLMPLHGIKHKLRYIDLHSNCIDSIHHLLQCTVGLHFLTNLILEKNGEDNPVCHLPGYRAIMLQTLPQLRILDCKNIFGEPVNTAEINSSHLQCFEGLLDNLVSSDSPLNISEDEIIDSMPVVTPPIDEIAPLDQFANTPTDTGLASLMSVCPSSEQEKVNNENDFQNEMKLQKLDDQILQLLNETSNSLIDNVPEKDLRPKRDTDVTSESDCGNRKECNRKIPRRSKIPYYSKTIQTIKHHSKNNSSFISYNRKMKQPFFKELYVRSSLVNNNILEEAEEQKTEIIKVNSGNSEDATYRALVDQLDQEREKRWKAEQAEKKLMDYIDELHKHANEKKDIHSLALLTTDRLKEIIFKERNSKLQLEIMVHRLQNEIKKLTIELIKTRDQQEDHIRHLRTLEKALEKMERQKGQQQAAQMRLIQEVELKAAAADREINLLRTSLHQEKEQVQQLHELLALKEQEYRKDLETREFLSEAEFQEALSKEIAKEDRKHEQAIKEYQDKIDALNQQYLDLENEFRIALTVEARRFKDVKDGFENIATELAKSKHALVWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKMKQETATNLQNQINTLEILIEDDKQKSIQIELLKHEKMQLISELAAKESLIYGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLCRENESLRKASERDNDTLRIKCKIIDDQTETIGKLKECLQEREEQIKTLHEKITEIQKCTQEQLDEKSSQLDNVIEKLERHNERKEKLKQQLKVKELELEEIRKAYSTLNQKWHDKGELLCHLEMQVKEVKENFENKERKLKAERDKSIELQKDAMEKLHSMDDAFKKQVDAIVEAHQAEIIQLASEKQKYIDSANLKVHQVEEEMRGLLEETCKNKKAMETKIKQLAFALDQIQQDM", "length": 1028, "header": "tr|F1RXB7-1|F1RXB7_PIG Isoform 1 of Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Sus scrofa OX=9823 GN=LRRCC1 PE=3 SV=4 CANONICAL=F1RXB7-1" }, "locus": { "chromosome": "4", "start_pos": 51570345, "end_pos": 51527039, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006739.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006739.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006556.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006556.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FE45", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE45" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1RXB7", "url": "https://www.uniprot.org/uniprotkb/F1RXB7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centriole", "id": "GO:0005814", "url": 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T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FE62", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512511", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512511", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZT52-1", "protein_name": "Proteolipid protein 2", "gene_name": "Plp2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSERLSAPGCWLACTSFSRSKKGILLFAEIILCLVILICFSASTSAYSSLLAIEMIFVAVLFVFYVCHLHSKISFISWPWTDFFRSLIAILYLITSIVVLVEGRGSSIFVAGVLGLLATLLFGYDAYITFPLKQQRHTASPTDPTNGP", "length": 150 }, "evidence": [ { "id": 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} ], "sequence": { "sequence": "MAALAAQVGPLLSLNPQEDAKFQKKVALARRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHIIPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKGIDYNFPSLVLHKDEEKPSFTGPRNSRKHQALRKKKKKEALAALNTPEKTVDSQGPTPVCTPTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSSRKKRRKNNQ", "length": 294, "header": "tr|F1RXX7-1|F1RXX7_PIG Isoform 1 of Nucleolar protein interacting with the FHA domain of MKI67 OS=Sus scrofa OX=9823 GN=NIFK PE=4 SV=2 CANONICAL=F1RXX7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FF29-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF29/entry", "sequence": { "sequence": "MAALAAQVGPLLSLNPQEDAKFQKKVALARRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHIIPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKGIDYNFPSLVLHKDEEKPSFTGPRNSRKHQALRKKKKKEALAALNTPEKTVDSQGPTPVCTPTFLEKRKSEWLCPQLRLQQPLKHVFHPHSQSRQRWGSPPERHQEDQEVTEVYAGQLDHFQLTRLPEKPISPECSCGEKCSFTGRTESGALAETTFPSTATF", "length": 342, "header": "tr|A0A8W4FF29-1|F1RXX7_PIG Computationally mapped isoform of Nucleolar protein interacting with the FHA domain of MKI67 OS=Sus scrofa OX=9823 GN=NIFK PE=4 SV=1 CANONICAL=F1RXX7-1" }, "locus": { "chromosome": "15", "start_pos": 29752754, "end_pos": 29721004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104226.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104226.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077850.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077850.1" } ] } }, { "isoform_ac": "F1RXX7-1", "url": "https://www.uniprot.org/uniprotkb/F1RXX7/entry", "sequence": { "sequence": "MAALAAQVGPLLSLNPQEDAKFQKKVALARRRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESEDVARIAAETMNNYLFGERLLKCHIIPPEKVHEELFREWHMPFKRPSFPAVKRYNQKRTLRQKLRMEERFKKKEKSLRKRLAKKGIDYNFPSLVLHKDEEKPSFTGPRNSRKHQALRKKKKKEALAALNTPEKTVDSQGPTPVCTPTFLEKRKSEVAKMNDDDKDHEIVFKQPVSGAKEETQETQIPTSSRKKRRKNNQ", "length": 294, "header": "tr|F1RXX7-1|F1RXX7_PIG Isoform 1 of Nucleolar protein interacting with the FHA domain of MKI67 OS=Sus scrofa OX=9823 GN=NIFK PE=4 SV=2 CANONICAL=F1RXX7-1" }, "locus": { "chromosome": "15", "start_pos": 29734183, "end_pos": 29721004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017130.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017130.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016670.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016670.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 236, "start_aa": "Thr", "end_pos": 236, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr236", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FF29", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q3SZM1-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "NIFK", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAFGGPAKPLLSLNPQEDAKFKKEVAQVRRRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKRYNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYNFPSLVKVLHKNEENASNTGPQNSRKHQALRKKKKAASVTPETPEKAVDSQGPTPVCTPAFLEKRKSEVAKMNDDDKDNEIVFKQPVSGVKEETQETQSPASSKKKRRRKHNQ", "length": 296 }, "evidence": [ { "id": "F1RXX7", "url": "https://omabrowser.org/oma/group/F1RXX7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RJM0-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "Nifk", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEYSGPAKPTLALNPREDSQFEKDLTQIQRRAKKKKEEKLNSGVVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAVKRYNQKRGHLQMLKMEYRFKKKEKLLRKKLAKKGIDYSFPSLVLPKPKKEISSIANTHGDSEANQDPTPVCTPTFLERRKSQLMEINDDDEIILKLPVSPVKEDTQKTPAPESSGKKRLRKRKSKQ", "length": 271 }, "evidence": [ { "id": "F1RXX7", "url": "https://omabrowser.org/oma/group/F1RXX7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8JIY8-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "nifk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTEGKSSDKPAKRLLALNPKEDAEFQKKVQQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTRYNKTHTEDDVKKVGTKLLSKESKLRKRLAAKGIDYDFPGFAAQIPAKKAPSEANVSVCSEDVTPVCTPSLLERRKSLRVEDDDVDDEIVIKVKPLPENSDDVEESEEESAEEDEGEEEEAA", "length": 269 }, "evidence": [ { "id": "F1RXX7", "url": "https://omabrowser.org/oma/group/F1RXX7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91VE6-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "Nifk", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGLAGPAKPSLALNPQEDSQFEKALTQIQGRTKKPQQKKKEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPAVKRYNRKRGHLQMLKMEYRFKKKEKLLRKKLAAKGIDYSFPSLVLPKPKNIAVAHRDSEGNQVLPDQKEGLSGEPRRKEKMMKEDISNNIPKKRKRSRRKKSSVDSQGPTPVCTPTFLERRKSQVMEVGGDKDDEIILKLPVPPVKEDTQKTPTSASPGGKRPRKRKSKQ", "length": 317 }, "evidence": [ { "id": "F1RXX7", "url": "https://omabrowser.org/oma/group/F1RXX7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYG3-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "NIFK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATFSGPAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLRMEERFKKKERLLRKKLAKKGIDYDFPSLILQKTESISKTNRQTSTKGQVLRKKKKKVSGTLDTPEKTVDSQGPTPVCTPTFLERRKSQVAELNDDDKDDEIVFKQPISCVKEEIQETQTPTHSRKKRRRSSNQ", "length": 293 }, "evidence": [ { "id": "F1RXX7", "url": "https://omabrowser.org/oma/group/F1RXX7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "condensed nuclear chromosome", "id": "GO:0000794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000794", "evidence": [ { "database": "UniProtKB", "id": "F1RXX7", "url": "https://www.uniprot.org/uniprotkb/F1RXX7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RXX7", "url": "https://www.uniprot.org/uniprotkb/F1RXX7" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1RXX7", "url": "https://www.uniprot.org/uniprotkb/F1RXX7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RXX7", "url": "https://www.uniprot.org/uniprotkb/F1RXX7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RXX7", "url": "https://www.uniprot.org/uniprotkb/F1RXX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RXX7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 294, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RXX7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RXX7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXX7" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 123, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 236 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": 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"table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S2I5-1", "uniprot_ac": "F1S2I5", "uniprot_id": "F1S2I5_PIG", "mass": { "chemical_mass": 215133.0, "monoisotopic_mass": 215133.0 }, "refseq": {}, "gene_names": [ { "name": "ANKRD31", "type": "recommended", "evidence": [ { "id": "F1S2I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2I5" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain 31", "type": "synonym", "evidence": [ { "id": "F1S2I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2I5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S2I5", "url": "https://www.uniprot.org/uniprotkb/F1S2I5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD31", "url": "https://www.uniprot.org/uniprotkb/F1S2I5", "locus": { "chromosome": "2", "start_pos": 84149358, "end_pos": 84366190, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014079", "url": "https://www.ensembl.org/id/ENSSSCG00000014079" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014079", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014079", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24176:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24176:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S2I5", "url": "https://www.uniprot.org/uniprotkb/F1S2I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2I5-1", "url": "https://www.uniprot.org/uniprotkb/F1S2I5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1923, "header": "tr|F1S2I5-1|F1S2I5_PIG Isoform 1 of Ankyrin repeat domain 31 OS=Sus scrofa OX=9823 GN=ANKRD31 PE=4 SV=6 CANONICAL=F1S2I5-1" }, "isoforms": [ { "isoform_ac": "F1S2I5-1", "url": "https://www.uniprot.org/uniprotkb/F1S2I5/entry", "sequence": { "sequence": "MAEGAQAPDWDSDETVIDGSVTESDQEEEELPWRRLLFGQDASLGSEFSLHPGLNGIHKGIPSPEIQLGFKLREDPQEQINKNKMMPVLCEDAVLQQPQDEMEQNEALLHCPVFTVSFPAELSLNHQSIGGLEPENPEVLPHTKKETSTDGDSCEISLLSSITIKEYDTFAVEEKSLIEPEKVLAVPNTFSELGKEVTLTMTSEETKDEESSLETFVSALEGLLTSPETTQEERLFGIMSDFEPRELMNPLNCSPNSISIPLTCHRDLLENKKEDALPAELLASLNALSEAKEAVYHRKEGGISLSAENECLGVEPRLSQIDEDCTQIGEVNFETLCSTPPFEQDSKLAELQKHLSAQQTLEDPNLFGLETLVHQNVNSCDPLNNKGNSNPAKNSSDQDTPLVLRRSSRLKVGRDAKPTTDDMFKMPEKISPKILGCENQTSNNSSTENFRTRSPALRIEGKGKTMRSSRLKSGEQIRKNRKLSGKNEKKKMNELSLSKINRRNIFGENLLYKAALNNDTDLVHHCIKKGADVNQPSHAGWTALHEASIGGFYPIVNALLKGGADVNVRGMYQITPLHDAVMNGHYKVVKLLLLNGADPLFRNASGECALDEAKDSCMKRLLERYVPKHQKHLISALKNDTDPSDIEDAHQHKKPKFSSKNHSGFVCDENSNRQKPEYVKVNKGSKEGLFITKEDVYEHHQKDSPYTQLGKSKRKRSTLKQIYSTGRRKDNFHNAENLRTKVSKDKERRGTQCKRTQVDDAVHESSPRKTKTTAVSSSRGVNQVVTCQQHILQTFDDLPEESCKSFSPVLAGLKNGLGNNVETWSVSEETCTRSLNLSDSQEIKFVALESIDQAEAVYFSGLSLHKNTKFTDQEPHTHQEEQHISPYKSHANSQSGQKDESLSKWEKISPSFTKENFNNDDGDSCATEETVTSKKVIISSGCKNHENYKENTTISKKMDFQQFLYSEDRFSQENELKAGSLAILPQQEAVNFSNSDNVIVSEHVSDYEPCTCGTSFDHSQGSAECTSLACTRTLSTKDVSELTSHMELFESPQDCSPSTPTHLRNQTDPHTVEKEEKEVNTKRNYTDREQKTSSSHSPLSTVVHSQVLETTKVEKRREESKTIPDTDFYSTDSINKELTSISQLSQREEKEISHKPGEELTNNINGDESTIRNCEDKKEKTDLEIHMSTSIQEHKKVQNIRKRQNFLKATCSQEMKTAGINKRHARGESRLHLAARRGNLSLVKALIESGADVNLKDNAGWTPLHEAASEGCNDVIVELLKASANVNCENVDGILPLHDAVANSHLKAAEILLQHGANPNQKDQKQKTALDKADDENMKDLLKSYGAIETHNRDETDAVVTVPAIRLKKQKQCFCEDCKTFDTHSLSHQKKTEENLPVHQTISSILQDIEEKQENLLQFEIRTPEDAEQYIDKMLKIKEVMDDVLAKQKAERDDLAKKYRVSIESFKHGVLREQLANLATRQKSLLLVAKKQKEISQKIHNYKNVTSSSDHSFRKLPCSSEICNEKDSREFAGLENSVQPQSGSLSPVRPVCGSMQKTQLCLEIWHDRQNNNTSPKSKTVRREEFCGNEMNSKRNVNDCTSNGLSKCRHSDGTKKIKLSSHPVNFIAQAEHSQKESDLTDTTAQGHASFGPSALIGTLNVSETTSLLDHSDAHPSAVIYDQALCSCDLKKGSRKTASQQPSRGTSESLAHQESDVFFGSNTGHQVKPYPKKSLLAVPHADGSQSSSSSGSGRQNTIKKPLNSSTSPKKKRMQIKDLILLGRINPGNNILEFKTQDTTHKASVLLSGKIKVENGQIYQNPVTWLKDLLGGESYVTWNYAWSKITYQGKELIKYVSEELPMPPDPDVLPQQHQPCLSGTSGGSMQSIPQYLHINEILLISDQEFLPCHIMDKHWKFYVECEELTF", "length": 1923, "header": "tr|F1S2I5-1|F1S2I5_PIG Isoform 1 of Ankyrin repeat domain 31 OS=Sus scrofa OX=9823 GN=ANKRD31 PE=4 SV=6 CANONICAL=F1S2I5-1" }, "locus": { "chromosome": "2", "start_pos": 84320564, "end_pos": 84149577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015380.6", "url": "https://www.ensembl.org/id/ENSSSCT00000015380.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014972.6", "url": "https://www.ensembl.org/id/ENSSSCP00000014972.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S2I5", "url": "https://www.uniprot.org/uniprotkb/F1S2I5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1084, "end_pos": 1086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1239, "end_pos": 1241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1504, "end_pos": 1506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1571, "end_pos": 1573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1572, 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"start_pos": 951, "end_pos": 953, "annotation": "n_glycosylation_sequon" }, { "start_pos": 991, "end_pos": 993, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S2I5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2I5" }, { "id": "PF18755", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18755" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RAMA", "eco_id": "ECO_0000259", "start_pos": 1754, "end_pos": 1854, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 1084, "end_pos": 1086 }, { "start_pos": 1239, "end_pos": 1241 }, { "start_pos": 1504, "end_pos": 1506 }, { "start_pos": 1571, "end_pos": 1573 }, { "start_pos": 1572, "end_pos": 1574 }, { "start_pos": 1659, "end_pos": 1661 }, { "start_pos": 1761, "end_pos": 1763 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 439, "end_pos": 441 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 603, "end_pos": 605 }, { "start_pos": 639, "end_pos": 641 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 836, "end_pos": 838 }, { "start_pos": 951, "end_pos": 953 }, { "start_pos": 991, "end_pos": 993 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"NP_001230291", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230291" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LACTB", "url": "https://www.uniprot.org/uniprotkb/F1S089", "locus": { "chromosome": "1", "start_pos": 108909693, "end_pos": 108924511, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004569", "url": "https://www.ensembl.org/id/ENSSSCG00000004569" } ] } } ], "crossref": [ { "id": "F1S089", "url": "https://alphafold.ebi.ac.uk/entry/F1S089", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004569", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004569", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152773", "url": "https://www.ncbi.nlm.nih.gov/gene/100152773", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052794", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052794", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152773", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152773", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CCRQQRH", "url": "https://omabrowser.org/oma/group/CCRQQRH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZIM8", "url": "https://www.orthodb.org/?gene=A0A286ZIM8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1S089", "url": "https://www.orthodb.org/?gene=F1S089", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46520", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46520", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46520:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46520:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230291", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230291", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZIM8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S089-1", "url": "https://www.uniprot.org/uniprotkb/F1S089-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRLLSAVPARAATPRGCAWGCGRRAAHQRAGLPKLGPGWVGGLGLGLGLALGMKLAGGLRGASPAPPPAAPDPESPILSEPLPPQEQPLAPWSPHTPVPPHARRFARAIDSSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDIPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDMKKVKEEKAYKALKMMKETESDQEKDLKEKGGKSNEKNDFAAKTKIEQDNEAKSRNSKPCKKKNDFEQGELYLKEKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGYKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMLMIWTPVPNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVLLVLPEELDAEALNNKVPPRGIVVSIICNMQSVGLNSTALKIALEFDKDRSDIP", "length": 556, "header": "tr|F1S089-1|F1S089_PIG Isoform 1 of Serine beta-lactamase-like protein LACTB, mitochondrial OS=Sus scrofa OX=9823 GN=LACTB PE=1 SV=1 CANONICAL=F1S089-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIM8/entry", "sequence": { "sequence": "MYRLLSAVPARAATPRGCAWGCGRRAAHQRAGLPKLGPGWVGGLGLGLGLALGMKLAGGLRGASPAPPPAAPDPESPILSEPLPPQEQPLAPWSPHTPVPPHARRFARAIDSSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEDLNSMYFLDFHTFILQRVKLDLNRFLEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDIPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDMKKVKEEKAYKALKMMKETESDQEKDLKEKGGKSNEKNDFAAKTKIEQDNEAKSRNSKPCKKKNDFEQGELYLKEKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGYKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMLMIWTPVPNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVLLVLPEELDAEALNNKVPPRGIVVSIICNMQSVGLNSTALKIALEFDKDRSDIP", "length": 583, "header": "tr|A0A286ZIM8-1|F1S089_PIG Computationally mapped isoform of Serine beta-lactamase-like protein LACTB, mitochondrial OS=Sus scrofa OX=9823 GN=LACTB PE=1 SV=1 CANONICAL=F1S089-1" }, "locus": { "chromosome": "1", "start_pos": 108924458, "end_pos": 108909960, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041703.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041703.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031429.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031429.1" } ] } }, { "isoform_ac": "F1S089-1", "url": "https://www.uniprot.org/uniprotkb/F1S089/entry", "sequence": { "sequence": "MYRLLSAVPARAATPRGCAWGCGRRAAHQRAGLPKLGPGWVGGLGLGLGLALGMKLAGGLRGASPAPPPAAPDPESPILSEPLPPQEQPLAPWSPHTPVPPHARRFARAIDSSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDIPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDMKKVKEEKAYKALKMMKETESDQEKDLKEKGGKSNEKNDFAAKTKIEQDNEAKSRNSKPCKKKNDFEQGELYLKEKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGYKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMLMIWTPVPNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVLLVLPEELDAEALNNKVPPRGIVVSIICNMQSVGLNSTALKIALEFDKDRSDIP", "length": 556, "header": "tr|F1S089-1|F1S089_PIG Isoform 1 of Serine beta-lactamase-like protein LACTB, mitochondrial OS=Sus scrofa OX=9823 GN=LACTB PE=1 SV=1 CANONICAL=F1S089-1" }, "locus": { "chromosome": "1", "start_pos": 108924458, "end_pos": 108909960, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005048.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005048.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004928.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004928.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZIM8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIM8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152773", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152773", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZSV0-1", "protein_name": "Lactamase beta", "gene_name": "LACTB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSGLARAVRRVAPVGLAAARHGESGGGRRWGWGLALGLALGVKAAADGGPEEVPQEVPRRGFGAAIERSRDLLRRIKDEAGIPGILVGVSVDGREVWSEGLGYADVENRVMCKPETIMRIASISKCLTMMAVAKLWEEGKLDLDAPVQKYVPEFPEKVYEGEKVTITTRLLVSHLSGIRHYEKDIAKVKEEKEKANRAVKLTKSGQDKEQKEKGGEGIEKTDSVKSKKEHEGEVRSRNSKPGRRDKEFEHEEYYLKEKFESVIESLKIFKNDPLFFKPGSQFLYSTYGFTLLSAVVERVSGQKFTDYMLKMFRDLDMLSTVLDDNEAMIYNRARCYVYNKKGRLVNAPYVDNSYKWAGGGFLSSVGDLLKFGNALLYSYQAGQFRNTDGKLLPGYLKPDTVAMMWTPVPKTEVSWDRDGKYAMAWAVVEKKQQCGFCRRQRHYASHTGGAVGASSVLLILPEELDSGAEDAAVVAPPRGVIVSIICNMQSVSLNSTALKIAREFDKEKRAQYIDSKKRDE", "length": 520 }, "evidence": [ { "id": "F1S089", "url": "https://omabrowser.org/oma/group/F1S089/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B0G0Z7-1", "protein_name": "Beta-lactamase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSLIKGTSLLFVGISGFSTILNCEDKPTTTTKTTTLTNNSVCCKSPTQCIVNSSTLSPIIIKNKKNMNRELKKEILSWKEGNCVPGISVCIQSNGETIYKEAFGFADVENVIPMETSSKLRVASISKALTSIGLGVLFEQGKIKFSDSIQKHVPEWKNSPNFPDDVLTINHVASHLGGIRHYGLNRKAEFYSVEKFKTDKEYNPWGHRNPLEMFKENPWVKDLEKTKPGHYFNYSTFGYTLLGLVIESASGKSFTTFMRDSVFRPCGMFDTQPDEHDSLIPGRSKQYALKFTPRTQQEISANGYDEARVSLCNAEFTNSSYKWPGGGFISTAEDLCKLGSTVLGGRLLKQSTIDHLFKPNPPLTGKNTMNYCTGWFKQPSSKNNTDIIYHTGNAVGGSTVLVMIPQENIVVSVLANQEKTNLINEFGFNLARIASKYNN", "length": 440 }, "evidence": [ { "id": "F1S089", "url": "https://omabrowser.org/oma/group/F1S089/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "D3ZFJ6-1", "protein_name": "Serine beta-lactamase-like protein LACTB, mitochondrial", "gene_name": "Lactb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYRFLSSVTSRATATAGPALGGGRRGAHGRPGLPMLSLGWAGGLGLGLGLALGAKLAIGLRGAVPIQSPADPEASGATELPHEQAPGPGSPHTPASPAARGFSRAIESSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDLPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDMKKVKEEKAYKALKMMKGTPPPDQEKELKEKGGKDNDKSDSPKAKAEQDSEAKCRSAKPGKKKNDFEQGELYLKEKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERTSGYKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMVMMWTPVPNTEMSWDKEGKYAMAWGVVEKKQTHGACRKQRHYASHTGGAVGASSVLLVLPEELDPEAVNNKVPPRGIIVSIICNMQSVGLNSTALKIALEFDKDRAD", "length": 550 }, "evidence": [ { "id": "F1S089", "url": "https://omabrowser.org/oma/group/F1S089/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83111-1", "protein_name": "Serine beta-lactamase-like protein LACTB, mitochondrial", "gene_name": "LACTB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYRLMSAVTARAAAPGGLASSCGRRGVHQRAGLPPLGHGWVGGLGLGLGLALGVKLAGGLRGAAPAQSPAAPDPEASPLAEPPQEQSLAPWSPQTPAPPCSRCFARAIESSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDIPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDIKKVKEEKAYKALKMMKENVAFEQEKEGKSNEKNDFTKFKTEQENEAKCRNSKPGKKKNDFEQGELYLREKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGCKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMVMMWTPVPNTEMSWDKEGKYAMAWGVVERKQTYGSCRKQRHYASHTGGAVGASSVLLVLPEELDTETINNKVPPRGIIVSIICNMQSVGLNSTALKIALEFDKDRSD", "length": 547 }, "evidence": [ { "id": "F1S089", "url": "https://omabrowser.org/oma/group/F1S089/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9EP89-1", "protein_name": "Serine beta-lactamase-like protein LACTB, mitochondrial", "gene_name": "Lactb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYRLLSSVTARAAATAGPAWDGGRRGAHRRPGLPVLGLGWAGGLGLGLGLALGAKLVVGLRGAVPIQSPADPEASGTTELSHEQALSPGSPHTPAPPAARGFSRAIESSRDLLHRIKDEVGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAGKLDLDLPVQHYVPEFPEKEYEGEKVSVTTRLLISHLSGIRHYEKDIKKVKEEKAYKALKMVKGTPPPSDQEKELKEKGGKNNEKSDAPKAKVEQDSEARCRSAKPGKKKNDFEQGELYLKEKFENSIESLRLFKNDPLFFKPGSQFLYSTFGYTLLAAIVERASGYKYLDYMQKIFHDLDMLTTVQEENEPVIYNRARFYVYNKKKRLVNTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGQFKNSNENLLPGYLKPETMVMMWTPVPNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVLLVLPEELDSEAVNNKVPPRGIIVSIICNMQSVGLNSTALKIALEFDKDRAD", "length": 551 }, "evidence": [ { "id": "F1S089", "url": "https://omabrowser.org/oma/group/F1S089/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089" } ], "pmid": "" }, { "name": "regulation of lipid metabolic process", "id": "GO:0019216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019216", "evidence": [ { "database": "UniProtKB", "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089" } ], "pmid": "" }, { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "F1S089", "url": "https://www.uniprot.org/uniprotkb/F1S089" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S089-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 556, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S089-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S089" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S089", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S089" }, { "id": "PF00144", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00144" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-lactamase-related", "eco_id": "ECO_0000259", "start_pos": 119, "end_pos": 238, "start_aa": "Arg", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 538, "end_pos": 540 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RRD7-1", "uniprot_ac": "F1RRD7", "uniprot_id": "F1RRD7_PIG", "mass": { "chemical_mass": 165704.0, "monoisotopic_mass": 165704.0 }, "refseq": {}, "gene_names": [ { "name": "CLASP2", "type": "recommended", "evidence": [ { "id": "F1RRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRD7" } ] } ], "protein_names": [ { "name": "CLIP-associating protein 1", "type": "recommended", "evidence": [ { "id": "F1RRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRD7/entry#names_and_taxonomy" } ] }, { "name": "Cytoplasmic linker-associated protein 1", "type": "synonym", "evidence": [ { "id": "F1RRD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRD7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2. This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AA01", "url": "https://www.uniprot.org/uniprotkb/A0A287AA01#function" }, { "database": "UniProtKB", "id": "ARBA00055763", "url": "https://www.uniprot.org/uniprotkb/ARBA00055763#function" }, { "database": "UniProtKB", "id": "A0A287BBG3", "url": "https://www.uniprot.org/uniprotkb/A0A287BBG3#function" }, { "database": "UniProtKB", "id": "A0A287AEM4", "url": "https://www.uniprot.org/uniprotkb/A0A287AEM4#function" }, { "database": "UniProtKB", "id": "F1RRD7", "url": "https://www.uniprot.org/uniprotkb/F1RRD7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRD7", "url": "https://www.uniprot.org/uniprotkb/F1RRD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLASP2", "url": "https://www.uniprot.org/uniprotkb/F1RRD7", "locus": { "chromosome": "13", "start_pos": 19305181, "end_pos": 19510585, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011236", "url": "https://www.ensembl.org/id/ENSSSCG00000011236" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011236", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011236", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057546", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057546", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21567", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21567", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21567:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21567:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12348", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12348", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-141430", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-141444", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2500257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68877", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9648025", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZIY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZIY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA01", "url": "https://www.uniprot.org/uniprotkb/A0A287AA01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AA01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC13", "url": "https://www.uniprot.org/uniprotkb/A0A287AC13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEM4", "url": "https://www.uniprot.org/uniprotkb/A0A287AEM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJG9", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3E4", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBG3", "url": "https://www.uniprot.org/uniprotkb/A0A287BBG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS64", "url": "https://www.uniprot.org/uniprotkb/A0A287BS64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRD7", "url": "https://www.uniprot.org/uniprotkb/F1RRD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RRD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQF9", "url": "https://www.uniprot.org/uniprotkb/I3LQF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQF9-1", "url": "https://www.uniprot.org/uniprotkb/I3LQF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPRSMEYFSAQVQQKDVGGRLQVGQELLLYLGVPGAIPDLEENLGCLGKTVDALTGWVGSSNYRVSLMGLEILSAFVDRLSTRFKSYVAMVIVALIDRLGDAKDKVRDKTQALILKLMDQVAPPMYIWEQLASGFKHKNSQSREGVCLCLIETLNVFGAQPLVLSKLVPHLCILFGDYNSQVRDAATLAIVEIYRHVGDKVRMDLYKKGIPPARLETILAKFDEVQNSGGMILSVCKDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGAGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEDTSDKMDGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKGVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1515, "header": "tr|F1RRD7-1|F1RRD7_PIG Isoform 1 of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=4 CANONICAL=F1RRD7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZIY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZIY7/entry", "sequence": { "sequence": "MRRLICKRICDYKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEVKTFWGSEKTAKLN", "length": 429, "header": "tr|A0A286ZIY7-1|F1RRD7_PIG Computationally mapped isoform of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=3 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19445801, "end_pos": 19395522, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058953.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058953.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031517.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031517.3" } ] } }, { "isoform_ac": "A0A287AA01-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AA01/entry", "sequence": { "sequence": "MEPRSMEYFSAQVQQKDVGGRLQVGQELLLYLGVPGAIPDLEENLGCLGKTVDALTGWVGSSNYRVSLMGLEILSAFVDRLSTRFKSYVAMVIVALIDRLGDAKDKVRDKTQALILKLMDQVAPPMYIWEQLASGFKHKNSQSREGVCLCLIETLNVFGAQPLVLSKLVPHLCILFGDYNSQVRDAATLAIVEIYRHVGDKVRMDLYKKGIPPARLETILAKFDEVQNSGGMILSVCKDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGAGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLASRHHSRSTGALYAPDVYGASGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKTVKPALRDQLHCFWSSKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1530, "header": "tr|A0A287AA01-1|A0A287AA01_PIG Computationally mapped isoform of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=2 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19510345, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051993.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051993.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040711.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040711.2" } ] } }, { "isoform_ac": "A0A287AC13-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC13/entry", "sequence": { "sequence": "MAMGDDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEDTSDKMDGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLASRHHSRSTGALYAPDVYGASGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKRVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1294, "header": "tr|A0A287AC13-1|A0A287AC13_PIG Computationally mapped isoform of Cytoplasmic linker associated protein 2 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=2 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19463347, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048328.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048328.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041346.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041346.2" } ] } }, { "isoform_ac": "A0A287AEM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEM4/entry", "sequence": { "sequence": "MEPRSMEYFSAQVQQKDVGGRLQVGQELLLYLGVPGAIPDLEENLGCLGKTVDALTGWVGSSNYRVSLMGLEILSAFVDRLSTRFKSYVAMVIVALIDRLGDAKDKVRDKTQALILKLMDQVAPPMYIWEQLASGFKHKNSQSREGVCLCLIETLNVFGAQPLVLSKLVPHLCILFGDYNSQVRDAATLAIVEIYRHVGDKVRMDLYKKGIPPARLETILAKFDEVQNSGGMILSVCKDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGAGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1506, "header": "tr|A0A287AEM4-1|A0A287AEM4_PIG Computationally mapped isoform of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=3 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19510345, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050795.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050795.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042331.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042331.3" } ] } }, { "isoform_ac": "A0A287AJG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJG9/entry", "sequence": { "sequence": "MRRLICKRICDYKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEDTSDKMDGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQRSSSPDKNEGSQSANTIGAGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1304, "header": "tr|A0A287AJG9-1|A0A287AJG9_PIG Computationally mapped isoform of Cytoplasmic linker associated protein 2 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=2 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19445801, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036852.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036852.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044161.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044161.2" } ] } }, { "isoform_ac": "A0A287B3E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E4/entry", "sequence": { "sequence": "MRRLICKRICDYKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQRSSSPDKNEAGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1287, "header": "tr|A0A287B3E4-1|A0A287B3E4_PIG Computationally mapped isoform of Cytoplasmic linker associated protein 2 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=3 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19445801, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051840.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051840.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050619.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050619.3" } ] } }, { "isoform_ac": "A0A287BBG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBG3/entry", "sequence": { "sequence": "MEPRSMEYFSAQVQQKDVGGRLQVGQELLLYLGVPGAIPDLEENLGCLGKTVDALTGWVGSSNYRVSLMGLEILSAFVDRLSTRFKSYVAMVIVALIDRLGDAKDKVRDKTQALILKLMDQVAPPMYIWEQLASGFKHKNSQSREGVCLCLIETLNVFGAQPLVLSKLVPHLCILFGDYNSQVRDAATLAIVEIYRHVGDKVRMDLYKKGIPPARLETILAKFDEVQNSGGMILSVCKDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEDTSDKMDGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKRVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1506, "header": "tr|A0A287BBG3-1|A0A287BBG3_PIG Computationally mapped isoform of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=3 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19510345, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057422.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057422.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053863.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053863.3" } ] } }, { "isoform_ac": "A0A287BS64-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS64/entry", "sequence": { "sequence": "MAMGDDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEDTSDKMDGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKRVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1273, "header": "tr|A0A287BS64-1|A0A287BS64_PIG Computationally mapped isoform of Cytoplasmic linker associated protein 2 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=3 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19463347, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045239.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045239.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059016.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059016.3" } ] } }, { "isoform_ac": "F1RRD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RRD7/entry", "sequence": { "sequence": "MEPRSMEYFSAQVQQKDVGGRLQVGQELLLYLGVPGAIPDLEENLGCLGKTVDALTGWVGSSNYRVSLMGLEILSAFVDRLSTRFKSYVAMVIVALIDRLGDAKDKVRDKTQALILKLMDQVAPPMYIWEQLASGFKHKNSQSREGVCLCLIETLNVFGAQPLVLSKLVPHLCILFGDYNSQVRDAATLAIVEIYRHVGDKVRMDLYKKGIPPARLETILAKFDEVQNSGGMILSVCKDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGAGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLEDTSDKMDGTASDDGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALLLGDIRTKKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKGVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1515, "header": "tr|F1RRD7-1|F1RRD7_PIG Isoform 1 of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=4 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19510345, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012303.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012303.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011984.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011984.4" } ] } }, { "isoform_ac": "I3LQF9-1", "url": "https://www.uniprot.org/uniprotkb/I3LQF9/entry", "sequence": { "sequence": "MEPRSMEYFSAQVQQKDVGGRLQVGQELLLYLGVPGAIPDLEENLGCLGKTVDALTGWVGSSNYRVSLMGLEILSAFVDRLSTRFKSYVAMVIVALIDRLGDAKDKVRDKTQALILKLMDQVAPPMVRDAATLAIVEIYRHVGDKVRMDLYKKGIPPARLETILAKFDEVQNSGGMILSVCKDKSFDDEESVDGNRPSSAASAFKVPAPKTSGNPVNSARKPGSAGGPKVGAGASKEGGAGAVDEDDFIKAFTDVPSIQIYSSRELEETLNKIREILSDDKHDWDQRANALKKIRSLLVAGAAQYDCFFQHLRLLDGALKLSAKDLRSQVVREACITVAHLSTVLGNKFDHGAEAIVPTLFNLVPNSAKVMATSGCAAIRFIIRHTHVPRLIPLITSNCTSKSVPVRRRSFEFLDLLLQEWQTHSLERHAAVLVETIKKGIHDADAEARVEARKTYMGLRNHFPGEAETLYNSLEPSYQKSLQTYLKSSGSVASLPQSDRSSSSSQESLNRPFSSKWSTANPSTVAGRVSTGSSKANSLPGSLQRSRSDIDVNAAAGAKAHHAAGQSVRSGRLGAGALNPGSYASLGRVRAKLSAPLAGMGSAKTDTRGRSRTKMVSQSQPGSRSGSPGRVLTTTALSTVSSGVQRVLVNSASAQKRSKIPRSQGCSREASPSRLSVARSSRIPRPSVSQGCSREASRESSRDTSPVRSFQPLGPGYGISQSSRLSSSVSAMRVLNTGSDVEEAVADALKKPARRRYESYGMHSDDDANSDASSACSERSYSSRNGSIPTYMRQTEDVAEVLNRCASSNWSERKEGLLGLQNLLKNQRTLSRVELKRLCEIFTRMFADPHGKVFSMFLETLVDFIQVHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRESFPNDLQFNILMRFTVDQTQTPSLKVKVAILKYIETLAKQMDPGDFINSSETRLAVSRVITWTTEPKSSDVRKAAQSVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLRNTGNGTQGSMGSPLTRPTPRSPANWSSPLTSPTNTSQNTLSPSAFDYDTENMNSEDIYSSLRGVTEAIQNFSFRSQEDMNEPLKRESKKDDVDSMCGGPGMSDPRAGGDATDSSQTALDNKASLLHSMPAHSSPRSRDYNPYNYSDSISLFNKSALKEAMFDDDADQFPDDLSLDHSDLVAELLKELSNHNERVEERKIALYELMKLTQEESFSVWDEHFKTILLLLLETLGDKEPTIRALALKVLREILRHQPARFKNYAELTVMKTLEAHKDPHKEVVRSAEEAASVLATSISPEQCIKVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKACVFCLVAVHAVIGDELKPHLSQLTGSKMKLLNLYIKRAQTGSGGGDPTTDVSGQS", "length": 1436, "header": "tr|I3LQF9-1|F1RRD7_PIG Computationally mapped isoform of CLIP-associating protein 1 OS=Sus scrofa OX=9823 GN=CLASP2 PE=1 SV=2 CANONICAL=F1RRD7-1" }, "locus": { "chromosome": "13", "start_pos": 19510345, "end_pos": 19307080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025077.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025077.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026339.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026339.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LQF9", "url": "https://www.uniprot.org/uniprotkb/I3LQF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-141430", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "resource": "Reactome", "description": "Inactivation of APC/C via direct inhibition of the APC/C complex" }, { "id": "R-SSC-141444", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "resource": "Reactome", "description": "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" }, { "id": "R-SSC-2467813", "name": "", "url": 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"MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPTAEISQENQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPGTAFSQSSHGAPVVYPTVSTHSSLSFDGGLNGQVASPSTSFFLLPLEAAGIPPGSILINPQTGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 1050, "header": "tr|A0A286ZJS7-1|F1S0D6_PIG Computationally mapped isoform of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=3 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041615.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041615.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031715.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031715.3" } ] } }, { "isoform_ac": "A0A286ZRE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRE8/entry", "sequence": { "sequence": "MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPAQSPAPAQLSSLKTVRPSGPPLSIIPQFSRPFVPGQGDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 993, "header": "tr|A0A286ZRE8-1|F1S0D6_PIG Computationally mapped isoform of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=3 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066422.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066422.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034041.3", "url": "https://www.ensembl.org/id/ENSSSCP00000034041.3" } ] } }, { "isoform_ac": "A0A287B9J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9J5/entry", "sequence": { "sequence": "MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPTAEISQENQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQPIRPLQSSSQPVQYSTAPYPSPLLPVSPTQQYSVQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPAQSPAPAQLSSLKTVRPSGPPLSIIPQFSRPFVPGQGDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 1072, "header": "tr|A0A287B9J5-1|A0A287B9J5_PIG Computationally mapped isoform of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=3 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050228.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050228.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052758.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052758.3" } ] } }, { "isoform_ac": "A0A287BR57-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR57/entry", "sequence": { "sequence": "MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPTAEISQENQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPGTAFSQSSHGAPVVYPTVSTHSSLSFDGGLNGQVASPSTSFFLLPLEAAGIPPGSILINPQTGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 1051, "header": "tr|A0A287BR57-1|A0A287BR57_PIG Computationally mapped isoform of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=3 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058927.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058927.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059115.3", "url": "https://www.ensembl.org/id/ENSSSCP00000059115.3" } ] } }, { "isoform_ac": "A0A8W4FJX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJX3/entry", "sequence": { "sequence": "MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPAAGIPPGSILINPQTGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPAQSPAPAQLSSLKTVRPSGPPLSIIPQFSRPFVPGQGDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 1009, "header": "tr|A0A8W4FJX3-1|F1S0D6_PIG Computationally mapped isoform of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=1 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092146.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092146.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079629.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079629.1" } ] } }, { "isoform_ac": "A0A8W4FKC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKC6/entry", "sequence": { "sequence": "MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPTAEISQENQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPAQSPAPAQLSSLKTVRPSGPPLSIIPQFSRPFVPGQGDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 1021, "header": "tr|A0A8W4FKC6-1|F1S0D6_PIG Computationally mapped isoform of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=1 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104463.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104463.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079677.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079677.1" } ] } }, { "isoform_ac": "F1S0D6-1", "url": "https://www.uniprot.org/uniprotkb/F1S0D6/entry", "sequence": { "sequence": "MRMSDTVTVKNETETMKDLEAEVKDTTRVENLIKSENYGKILAEKNERCIDNNTDLQRPLQSFGQTGKRSKSSSKLKLVRSLAVCEESPPPPTAEISQENQEKIQIQLTQSFEKEEKPTKDEAEKEKASDKLPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYFGLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRIQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTENDLKYSEPRPWSSTDSDSSLRNFKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGSLSHIQQPLPGTAFSQSSHGAPVVYPTVSTHSSLSFDGGLNGQVASPSTSFFLLPLEAAGIPPGSILINPQTGQPFINPDGSPVVYNPPMTQQPVRTQVPGPPQPPLPPPPPQQQAANHIFSQPIRPLQSSSQPVQYSTAPYPSPLLPVSPTQQYSVQDTLGSQFSHMSLARQPSADGSDPHATMFQSTVVLQSPQQSGYIMTAAPPPPPPPPPPPPPPPLPPGQPVPTAGYSASGHPVSQPVLQQQGFIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVMPNQQQNYQGLVGVQQPQSQSLVGGQPSSIGNQIQGVVIPYPSVPSYQVSLPQVSQGIAHQTYQQPVMFPNQPNQGSMPTAGMPVYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCNSQQLQGHQCAAMPPPPTGGMVMMQLSLPNNPQSRAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQDARYPLLGQPLQYNPPAVLHGHIPAQQGQSGNRHGNRGRKQAKKAASTDLGAGEAVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPQLRRHPLCCGSGDNTVNPERSKPSDLASTYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ", "length": 1085, "header": "tr|F1S0D6-1|F1S0D6_PIG Isoform 1 of R3H domain containing 1 OS=Sus scrofa OX=9823 GN=R3HDM1 PE=4 SV=4 CANONICAL=F1S0D6-1" }, "locus": { "chromosome": "15", "start_pos": 16340311, "end_pos": 16231961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065524.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065524.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041129.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041129.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 446, "start_aa": "Thr", "end_pos": 446, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr446", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 571, "start_aa": "Thr", "end_pos": 571, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr571", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": 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"length": 1075, "header": "tr|A0A286ZPS3-1|F1S0P1_PIG Computationally mapped isoform of Regulator of G-protein signaling 22 OS=Sus scrofa OX=9823 GN=RGS22 PE=4 SV=2 CANONICAL=F1S0P1-1" }, "locus": { "chromosome": "4", "start_pos": 37041499, "end_pos": 36919632, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053379.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053379.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033609.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033609.2" } ] } }, { "isoform_ac": "F1S0P1-1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1/entry", "sequence": { "sequence": "MPEKRLTAEPPAITEEEFEDSLATDDFLVDYFNEFLSLPTFSEAIRFNVDYGVFEVVNNAPQLLEKQLKKILLNQQPRNPIYDVVRKAKSDVKPFGVNAPSEDETIDVNYRVMCLNREQGIQWIKKERLPTFLESDCYFEYRLAKLVSQVRWSESGMNIILGTDFSPWVLRKPPSPPPPPVEEDDVLIKKKFYISLGEASYTQTKDWFALAKQSQQTVSTFSLPSYILHHKTESPVISSVSESCIFDDGVHPRTKRGSSKSTGLISAFEEDGSVSLQDTPSQALLRIYLEKQQDVDKSLTLHFSTCEEFLRSYVNFILRAAIHQILGVPLKESPDYINFNNVTEVVFEECLRLTSGRNVLPSEMIQTIKSEESLKEAVSKPESVGIESRADWCISHKTYDIGNRKEFERFKKFVKGTLGERYWWLWMDIERLKVLKDPGRHQRHLEKMKKRYLVSSGDCYLSTEILSKFKLLDGSQWKEEHLKNIQTEVVKPLLLYWAPRFCVTHSSSTKHASAELKFWHLRQEKPRKDVDPFPQMATLLPLRPKSCIPQISEMQKEESSLLQLSKSPKKPPRVKTANQKPSKNESLYPVSSKDDVIGKGSRHMSESSKVIHLTSFTDISECLKPQLDRRYTYTEEPLIKTMADGALGGFDMENLLQSLYVENRAGFFFTKFCENSGNKLWKNSVYFWFDLQAYHQLFYQETLHPFKVCKQAQYLFATYIAPSATLDIGLQQEKKREIYMKIQPPFEDLFDTAEEYILLLLLEPWTKMVKSDQAAYGKVELVEEIRQLDSTYFRKLQALHKETFSKKVEDTTCDTGTGISPLPRVSKQTEYWNNVPAEFRHFTFNDLVNNTLEFEHFRQFLEAHSSSMDLMCWTDIEQFRRITYKDRKQREAKSIYIKNKYLNKKYFFGPNSPASLYQQDQIMNLSGGWGKILHEQLDAAVLIEIQKHVLNRLENVWLPLFLASEHFAARQKIKVQMRDIAEELLLQRHERKIGVWKPVESKWISSSCEIVAFRKALLNPVTARQFQRFVALKGDLLENGVLFWQEVQKYKDLCHSHCDESIIHKKIMTIINCFINSSIPPALQIDIPVEQAQKIIEHRKELGPYIFREAQMTIFGVLFKFWPQFCEFRRNLTDEKIMSVLERRQEYSKQKKKLAATEDEKFAKDGIKQYPSISGSTNKTATLASDPSLGLQAYGRQPTWCYSKYIEALEQERILLKIQEELERKLFAATPSFTNFKPTASTVSLKKTLSSHNIQK", "length": 1256, "header": "tr|F1S0P1-1|F1S0P1_PIG Isoform 1 of Regulator of G-protein signaling 22 OS=Sus scrofa OX=9823 GN=RGS22 PE=4 SV=4 CANONICAL=F1S0P1-1" }, "locus": { "chromosome": "4", "start_pos": 37041499, "end_pos": 36886787, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006660.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006660.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006481.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006481.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZPS3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPS3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S0P1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S0P1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S0P1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "F1S0P1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G-protein alpha-subunit binding", "id": "GO:0001965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001965", "evidence": [ { "database": "UniProtKB", "id": "F1S0P1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of signal transduction", "id": "GO:0009968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009968", "evidence": [ { "database": "UniProtKB", "id": "F1S0P1", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1076, "end_pos": 1078, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1131, "end_pos": 1133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1178, "end_pos": 1180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 849, "end_pos": 851, "annotation": "n_glycosylation_sequon" }, { "start_pos": 924, "end_pos": 926, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S0P1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1256, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S0P1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S0P1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S0P1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0P1" }, { "id": "PS50132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RGS", "eco_id": "ECO_0000259", "start_pos": 655, "end_pos": 761, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { 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"https://www.uniprot.org/uniprotkb/A0A286ZQL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZV7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SRB7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SRB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SRB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SRB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE03", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FE03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2J5", "url": "https://www.uniprot.org/uniprotkb/F1S2J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2J5-1", "url": "https://www.uniprot.org/uniprotkb/F1S2J5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFPVDMLDNCSQEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFSPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKMTAVSQNEAKRPVPGEYALASVPEYEVGTEDNQPSEMQLTIDSLKDAFASTSEGHGKTPVSTRTRSSHLKRPKIGKRFQDSEFSGSQGEDEKTPQTSPTASVNKLESTAHTSESSEEFLEEPEQSVIDFEDESSDKDVRPAPEAQPQLEKQDGEKESELEPMNGEIMDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSTNLVPLVVESSKPPEAVAQDKTSHITDSEMLLDEGPSDDKGHSEEKLPLVSRKKAHFGSSDNVTTIPNEERSDSGFPNSVIAEFSEESISENVSPNTTSSLEDQGEEGVAESQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT", "length": 669, "header": "tr|F1S2J5-1|F1S2J5_PIG Isoform 1 of Family with sequence similarity 169 member A OS=Sus scrofa OX=9823 GN=FAM169A PE=1 SV=2 CANONICAL=F1S2J5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQL4/entry", "sequence": { "sequence": "MAFPVDMLDNCSQEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFSPEDSLTGSICASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKMTAVSQNEAKRPVPGEYALASVPEYEVGTEDNQPSEMQLTIDSLKDAFASTSEGHGKTPVSTRTRSSHLKRPKIGKRFQDSEFSGSQGEDEKTPQTSPTASVNKLESTAHTSESSEEFLEEPEQSVIDFEDESSDKDVRPAPEAQPQLEKQDGEKESELEPMNGEIMDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSTNLVPLVVESSKPPEAVAQDKTSHITDSEMLLDEGPSDDKGHSEEKLPLVSRKKAHFGSSDNVTTIPNEERSDSGFPNSVIAEFSEESISENVSPNTTSSLEDQGEEGVAESQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT", "length": 583, "header": "tr|A0A286ZQL4-1|F1S2J5_PIG Computationally mapped isoform of Family with sequence similarity 169 member A OS=Sus scrofa OX=9823 GN=FAM169A PE=1 SV=2 CANONICAL=F1S2J5-1" }, "locus": { "chromosome": "2", "start_pos": 83904380, "end_pos": 83855890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042199.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042199.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033908.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033908.2" } ] } }, { "isoform_ac": "A0A286ZZV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZV7/entry", "sequence": { "sequence": "MAFPVDMLDNCSQEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFSPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKMTAVSQNEAKRPVPGEYALASVPEYEVGTEDNQPSEMQLTHGKTPVSTRTRSSHLKRPKIGKRFQDSEFSGSQGEDEKTPQTSPTASVNKLESTAHTSESSEEFLEEPEQSVIDFEDESSDKDVRPAPEAQPQLEKQDGEKESELEPMNGEIMDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSTNLVPLVVESSKPPEAVAQDKTSHITDSEMLLDEGPSDDKGHSEEKLPLVSRKKAHFGSSDNVTTIPNEERSDSGFPNSVIAEFSEESISENVSPNTTSSLEDQGEEGVAESQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT", "length": 655, "header": "tr|A0A286ZZV7-1|A0A286ZZV7_PIG Computationally mapped isoform of Family with sequence similarity 169 member A OS=Sus scrofa OX=9823 GN=FAM169A PE=1 SV=2 CANONICAL=F1S2J5-1" }, "locus": { "chromosome": "2", "start_pos": 83904380, "end_pos": 83855890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066324.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066324.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037048.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037048.3" } ] } }, { "isoform_ac": "A0A4X1SRB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SRB7/entry", "sequence": { "sequence": "MPPSSSAGLGPLPSRCRRAHSPPSSPTWSPSAQRMAFPVDMLDNCSQEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFSPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKMTVSQNEAKRPVPGEYALASVPEYEVGTEDNQPSEMQLTIDSLKDAFASTSEGHGKTPVSTRTRSSHLKRPKIGKRFQDSEFSGSQGEDEKTPQTSPTASVNKLESTAHTSESSEEFLEEPEQSVIDFEDESSDKDVRPAPEAQPQLEKQDGEKESELEPMNGEIMDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSTNLVPLVVESSKPPEAVAQDKTSHITDSEMLLDEGPSDDKGHSEEKLPLVSRKKAHFGSSDNVTTIPNEERSDSGFPNSVIAEFSEESISENVSPNTTSSLEDQGEEGVAESQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT", "length": 702, "header": "tr|A0A4X1SRB7-1|A0A4X1SRB7_PIG Computationally mapped isoform of Family with sequence similarity 169 member A OS=Sus scrofa OX=9823 GN=FAM169A PE=1 SV=1 CANONICAL=F1S2J5-1" }, "locus": { "chromosome": "2", "start_pos": 83926244, "end_pos": 83855890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102743.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102743.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078001.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078001.1" } ] } }, { "isoform_ac": "A0A8W4FE03-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE03/entry", "sequence": { "sequence": "MAFPVDMLDNCSQEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFSPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGLHMLEDFVDSFTEDALGLRYPLTSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKMTAVSQNEAKRPVPGEYALASVPEYEVGTEDNQPSEMQLTIDSLKDAFASTSEGHGKTPVSTRTRSSHLKRPKIGKRFQDSEFSGSQGEDEKTPQTSPTASVNKLESTAHTSESSEEFLEEPEQSVIDFEDESSDKDVRPAPEAQPQLEKQDGEKESELEPMNGEIMDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSTNLVPLVVESSKPPEAVAQDKTSHITDSEMLLDEGPSDDKGHSEEKLPLVSRKKAHFGSSDNVTTIPNEERSDSGFPNSVIAEFSEESISENVSPNTTSSLEDQGEEGVAESQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT", "length": 630, "header": "tr|A0A8W4FE03-1|F1S2J5_PIG Computationally mapped isoform of Family with sequence similarity 169 member A OS=Sus scrofa OX=9823 GN=FAM169A PE=1 SV=1 CANONICAL=F1S2J5-1" }, "locus": { "chromosome": "2", "start_pos": 83904380, "end_pos": 83855890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091998.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091998.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077491.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077491.1" } ] } }, { "isoform_ac": "F1S2J5-1", "url": "https://www.uniprot.org/uniprotkb/F1S2J5/entry", "sequence": { "sequence": "MAFPVDMLDNCSQEELENSAEDYMSDLRCGDPENPECFSLLNITIPISLSNVGFVPLYGGDQTQKILALFSPEDSLTAVALYLADQWWAIDDIVKTSVPSREGLKQVRTLGERVVLYVLNRIIYRKQEMERNEIPFLCHSSTDYAKILWKKGEAIGFYSVKPTGSICASFLTQSYQLPVLDTMFVRKKYRGKDFGLHMLEDFVDSFTEDALGLRYPLTSLMYTACKQYFEKYPGDHELLWEVEGVGHWYQRIPVTRALQREALKMTAVSQNEAKRPVPGEYALASVPEYEVGTEDNQPSEMQLTIDSLKDAFASTSEGHGKTPVSTRTRSSHLKRPKIGKRFQDSEFSGSQGEDEKTPQTSPTASVNKLESTAHTSESSEEFLEEPEQSVIDFEDESSDKDVRPAPEAQPQLEKQDGEKESELEPMNGEIMDDTLKTSLITEEEDSTSEVLDEELKLQSFNSSEDSTNLVPLVVESSKPPEAVAQDKTSHITDSEMLLDEGPSDDKGHSEEKLPLVSRKKAHFGSSDNVTTIPNEERSDSGFPNSVIAEFSEESISENVSPNTTSSLEDQGEEGVAESQETSTALPQSSLIEVELEDVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKTVDSSSEEIEVEVPVVDRRNLRRKAKGHKGPAKKKAKLT", "length": 669, "header": "tr|F1S2J5-1|F1S2J5_PIG Isoform 1 of Family with sequence similarity 169 member A OS=Sus scrofa OX=9823 GN=FAM169A PE=1 SV=2 CANONICAL=F1S2J5-1" }, "locus": { "chromosome": "2", "start_pos": 83904380, "end_pos": 83855890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028610.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028610.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025621.4", "url": "https://www.ensembl.org/id/ENSSSCP00000025621.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FE03", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FE03" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518001", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518001", "resource": "KEGG Pathway" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear membrane", "id": "GO:0031965", "url": 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[], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 461, "end_pos": 463 }, { "start_pos": 528, "end_pos": 530 }, { "start_pos": 558, "end_pos": 560 }, { "start_pos": 562, "end_pos": 564 }, { "start_pos": 608, "end_pos": 610 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RSP8-1", "uniprot_ac": "F1RSP8", "uniprot_id": "F1RSP8_PIG", "mass": { "chemical_mass": 49262.0, "monoisotopic_mass": 49262.0 }, "refseq": {}, "gene_names": [ { "name": "LRRC14", "type": "recommended", "evidence": [ { "id": "F1RSP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSP8" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat-containing protein 14", "type": "recommended", "evidence": [ { "id": "F1RSP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSP8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Negatively regulates Toll-like receptor-mediated NF-kappa-B signaling by disrupting IKK core complex formation through interaction with IKBKB.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY7#function" }, { "database": "UniProtKB", "id": "ARBA00056349", "url": "https://www.uniprot.org/uniprotkb/ARBA00056349#function" }, { "database": "UniProtKB", "id": "F1RSP8", "url": "https://www.uniprot.org/uniprotkb/F1RSP8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RSP8", "url": "https://www.uniprot.org/uniprotkb/F1RSP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC14", "url": "https://www.uniprot.org/uniprotkb/F1RSP8", "locus": { "chromosome": "4", "start_pos": 279764, "end_pos": 287062, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030451", "url": "https://www.ensembl.org/id/ENSSSCG00000030451" } ] } } ], "crossref": [ { "id": "F1RSP8", "url": "https://alphafold.ebi.ac.uk/entry/F1RSP8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030451", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030451", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524251", "url": "https://www.ncbi.nlm.nih.gov/gene/100524251", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524251", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524251", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VTECELM", "url": "https://omabrowser.org/oma/group/VTECELM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZQY7", "url": "https://www.orthodb.org/?gene=A0A286ZQY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9758274", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9758274", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZQY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSP8", "url": "https://www.uniprot.org/uniprotkb/F1RSP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSP8-1", "url": "https://www.uniprot.org/uniprotkb/F1RSP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHTLVFLSTRQVLQCQSAACQALPLLPRELFPLLFKVAFMDKKTIVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERPSTESMQAVILGLTARLHTPETEAGTQPLCRKHALRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIAQQQGRTAEPGLAPVPVELLDAGCLRRVDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFTCLRELSMGSSLLSGRLDQLLSTLQSPLESLELAFCALLPEDLRFLARSPHAVHLKKLDLSGNDLSGSQLEPFQGLLQAAAATLLHLELTECQLADTQLLATLPVLTRCTNLRYLGLYGNPLSMAGLKELLRDSVAQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 444, "header": "tr|F1RSP8-1|F1RSP8_PIG Isoform 1 of Leucine-rich repeat-containing protein 14 OS=Sus scrofa OX=9823 GN=LRRC14 PE=3 SV=2 CANONICAL=F1RSP8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY7/entry", "sequence": { "sequence": "MHTLVFLSTRQVLQCQSAACQALPLLPRELFPLLFKVAFMDKKTIVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERPSTESMQAVILGLTARLHTPETEAGTQPLCRKHALRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIAQQQGRTAEPGLAPVPVEVRVDLRVNRASYAFLREALRSSVGSPLRLCCRDLRAEDLPMRNTVALLQLLDAGCLRRVDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFTCLRELSMGSSLLSGRLDQLLSTLQSPLESLELAFCALLPEDLRFLARSPHAVHLKKLDLSGNDLSGSQLEPFQGLLQAAAATLLHLELTECQLADTQLLATLPVLTRCTNLRYLGLYGNPLSMAGLKELLRDSVAQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 493, "header": "tr|A0A286ZQY7-1|F1RSP8_PIG Computationally mapped isoform of Leucine-rich repeat-containing protein 14 OS=Sus scrofa OX=9823 GN=LRRC14 PE=3 SV=1 CANONICAL=F1RSP8-1" }, "locus": { "chromosome": "4", "start_pos": 285269, "end_pos": 283539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051105.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051105.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033992.1" } ] } }, { "isoform_ac": "F1RSP8-1", "url": "https://www.uniprot.org/uniprotkb/F1RSP8/entry", "sequence": { "sequence": "MHTLVFLSTRQVLQCQSAACQALPLLPRELFPLLFKVAFMDKKTIVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERPSTESMQAVILGLTARLHTPETEAGTQPLCRKHALRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIAQQQGRTAEPGLAPVPVELLDAGCLRRVDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFTCLRELSMGSSLLSGRLDQLLSTLQSPLESLELAFCALLPEDLRFLARSPHAVHLKKLDLSGNDLSGSQLEPFQGLLQAAAATLLHLELTECQLADTQLLATLPVLTRCTNLRYLGLYGNPLSMAGLKELLRDSVAQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 444, "header": "tr|F1RSP8-1|F1RSP8_PIG Isoform 1 of Leucine-rich repeat-containing protein 14 OS=Sus scrofa OX=9823 GN=LRRC14 PE=3 SV=2 CANONICAL=F1RSP8-1" }, "locus": { "chromosome": "4", "start_pos": 285269, "end_pos": 283539, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024606.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024606.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024801.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024801.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQY7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524251", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524251", "resource": "KEGG Pathway" }, { "id": "R-SSC-9758274", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9758274", "resource": "Reactome", "description": "Regulation of NF-kappa B signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PJJ5-1", "protein_name": "Leucine-rich repeat-containing protein 14", "gene_name": "LRRC14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHTLVFLSTRQVLQCQSAACQALPLLPRELFPLLFKVAFMDKKTVVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERPSTESMQAVILGLTARLHTPETEPGTQPLCRKHTLRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIEQQQGRTAEPGQAPVPVEVRVDLRVNRASYAFLREALRSSVGSPLRLCCRDLRAEDLPMRNTVALLQLLDAGCLRRVDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFTCLRELSMGSSLLSGRLDQLLSTLQSPLESLELAFCALLPEDLRFLARSSHAVHLKKLDLSGNDLSGSQLEPFQGLLQAAAATLLHLELTECQLADTQLLATLPVLTRCASLRYLGLYGNPLSVAGLRELLRDSVVQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 493 }, "evidence": [ { "id": "F1RSP8", "url": "https://omabrowser.org/oma/group/F1RSP8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HWK5-1", "protein_name": "Leucine-rich repeat-containing protein 14", "gene_name": "Lrrc14", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHTLVFLSTRQVLQCQPAACQALPLLPRELFPLLFKVAFMDKKTAVLQELVHTWPFPLLSFQQLLQECAHCSRALLQERLSTESMQAVILGLTARLHTPEREAGIQPFCRKHALRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIAQQQGGTAEPELSLPVPVEVRVDLRVNRASYTFLHEALQSSVDSPLRLCCRDLRAEDLPMRNTVALLQLLDAGCLRRIDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFVCLRELSMGSSLLSGRLDQLLGTLQSPLESLELAFCALLPEDLRFLAQSSHAAHLKKLDLSGNDLSGNQLIPFQGLLQAVAATLLHLELTECQLADAQLLATLPTLTQCVSLRYLGLYGNPLSMAGLKELLRDSVVQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 494 }, "evidence": [ { "id": "F1RSP8", "url": "https://omabrowser.org/oma/group/F1RSP8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q15048-1", "protein_name": "Leucine-rich repeat-containing protein 14", "gene_name": "LRRC14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHTLVFLSTRQVLQCQPAACQALPLLPRELFPLLFKVAFMDKKTVVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERPSTESMQAVILGLTARLHTSEPGASTQPLCRKHALRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIAQQQGGAAEPGPAPIPVEVRVDLRVNRASYAFLREALRSSVGSPLRLCCRDLRAEDLPMRNTVALLQLLDAGCLRRVDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFTCLRELSMGSSLLSGRLDQLLSTLQSPLESLELAFCALLPEDLRFLARSPHAAHLKKLDLSGNDLSGSQLAPFQGLLQASAATLLHLELTECQLADTQLLATLPILTQCASLRYLGLYGNPLSMAGLKELLRDSVAQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 493 }, "evidence": [ { "id": "F1RSP8", "url": "https://omabrowser.org/oma/group/F1RSP8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q569B5-1", "protein_name": "Leucine-rich repeat-containing protein 14", "gene_name": "Lrrc14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHTLVFLSTRQVLQCQPAACQALPLLPRELFPLLFKVAFMDKKTAVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERLSTESMQAVILGLTARIHAREAEAGTQPVCRKHTLRVLDMTGLLDDGVEQDPGTMSMWDCTAAVARTCIAQQQVGTAKPGLSPVPVEIRVDLRVNRASYTFLREALQSSVDSLLRLCCRDLRAEDLPMRNTVALLQLLDAGCLRRIDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFICLRELSIGSSLLSGRLDQLLSTLQRPLESLELAFCALLPEDLRFLAQSSHAAHLKKLDLSGNDLSGNQLTPFQGLLQAVAATLLHLELTECQIADAQLLATLPTLTRCASLRYLGLYGNPLSMAGLKELLRDSVIQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFNL", "length": 493 }, "evidence": [ { "id": "F1RSP8", "url": "https://omabrowser.org/oma/group/F1RSP8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VC16-1", "protein_name": "Leucine-rich repeat-containing protein 14", "gene_name": "Lrrc14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHTLVFLSTRQVLQCQPAACQALPLLPRELFPLLFKVAFMDKKTLVLRELVHTWPFPLLSFQQLLQECAHCSRALLQERLSTESMQAVILGLTARIHTQETEAGTQPLCRKHALRVLDMTGLLDDGVEQDPETMSMWDCTAAVARTCIAQQQGGTAEPGLSPVPVEIRVDLRVNRASYTFLREALQSSVASPLRLCCRDLRAEDLPMRNTVALLQLLDAGCLRRIDLRFNNLGLRGLSVIIPHVARFQHLASLRLHYVHGDSRQPSVDGEDNFRYFLAQMGRFMCLRELSMGSSLLSGRLDQLLSTLQRPLESLELAFCALLPEDLRFLAQSSHAAHLKKLDLSGNDLSGNQLTPFQGLLQAVATTLLHLELTECQLADAQLLATLPTLTRCASLRYLGLYGNPLSMAGLKELLRDSVVQAELRTVVHPFPVDCYEGLPWPPPASVLLEASINEEKFARVEAELHQLLLASGRAHVLWTTDIYGRLAADYFSL", "length": 493 }, "evidence": [ { "id": "F1RSP8", "url": "https://omabrowser.org/oma/group/F1RSP8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RSP8", "url": "https://www.uniprot.org/uniprotkb/F1RSP8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "F1RSP8", "url": "https://www.uniprot.org/uniprotkb/F1RSP8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of toll-like receptor signaling pathway", "id": "GO:0034122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034122", "evidence": [ { "database": "UniProtKB", "id": "F1RSP8", "url": "https://www.uniprot.org/uniprotkb/F1RSP8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RSP8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 444, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RSP8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RSP8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RX08-1", "uniprot_ac": "F1RX08", "uniprot_id": "F1RX08_PIG", "mass": { "chemical_mass": 34256.0, "monoisotopic_mass": 34256.0 }, "refseq": { "ac": "XP_005653505", "name": "ribonuclease P protein subunit p40 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653505" }, "gene_names": [ { "name": "RPP40", "type": "recommended", "evidence": [ { "id": "F1RX08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ] }, { "name": "RPP40", "type": "synonym", "evidence": [ { "id": "XP_005653505", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653505" } ] } ], "protein_names": [ { "name": "Ribonuclease P/MRP subunit p40", "type": "synonym", "evidence": [ { "id": "F1RX08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX08/entry#names_and_taxonomy" } ] }, { "name": "ribonuclease P protein subunit p40 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005653505", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653505" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPP40", "url": "https://www.uniprot.org/uniprotkb/F1RX08", "locus": { "chromosome": "7", "start_pos": 2987271, "end_pos": 3005271, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000998", "url": "https://www.ensembl.org/id/ENSSSCG00000000998" } ] } } ], "crossref": [ { "id": "F1RX08", "url": "https://alphafold.ebi.ac.uk/entry/F1RX08", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000998", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000998", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110255215", "url": "https://www.ncbi.nlm.nih.gov/gene/110255215", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255215", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255215", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HAYNCRV", "url": "https://omabrowser.org/oma/group/HAYNCRV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZR31", "url": "https://www.orthodb.org/?gene=A0A286ZR31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RX08", "url": "https://www.orthodb.org/?gene=F1RX08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15396", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15396", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15396:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15396:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653505", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653505", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZR31", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZR31-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANU7", "url": "https://www.uniprot.org/uniprotkb/A0A287ANU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QID7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QID7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QID7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QID7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX08-1", "url": "https://www.uniprot.org/uniprotkb/F1RX08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFGPYYSVKDLPLHELITHEFINTFVKKGSCSALTYNANIDEDNAAALLPNGKLILSLDKDTYEETGLQGRPSRYSGRKIMKFIVSIDLMDLSFHPASKKYERVSWAFKEKKPLRFDFLLAWHQTGAEESTLMSYFSSYRIQEHRPKIAVSSVADLQCPVLRSSELGGQPDTACSALELFDWLGAVFSHAELNNEPDSFLSSYCCPQPSTVVARASLCTVTGFILPEKICLLLEQLCRYFDEPKLAPWVTLAVQGFADSPVSWRENEHGFRRGGEHLYNFVIFNNRDYWLHMAVGADDDCPP", "length": 303, "header": "tr|F1RX08-1|F1RX08_PIG Isoform 1 of Ribonuclease P/MRP subunit p40 OS=Sus scrofa OX=9823 GN=RPP40 PE=4 SV=2 CANONICAL=F1RX08-1" }, "isoforms": [ { "isoform_ac": "A0A286ZR31-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR31/entry", "sequence": { "sequence": "MATLCRLREVPRHLLVCEKSNFGHDKSRHRHIVETHYYNYRVSFLIPECGILSKELKDLVMAFGPYYSVKDLPLHELITHEFINTFVKKGSCSALTYNANIDEDNAAALLPNGKLILSLDKDTYEETGLQGRPSRYSGRKIMKFIVSIDLMDLSFHPASKKYERVSWAFKEKKPLRFDFLLAWHQTGAEESTLMSYFSSYRIQEHRPKIAVSSVADLQCPVLRSSELGGQPDTACSALELFDWLGAVFSHAELNNEPDSFLSSYCCPQPSTVVARASLCTVTGFILPEKICLLLEQLCRYFDEPKLAPWVTLAVQGFADSPVSWRENEHGFRRGGEHLYNFVIFNNRDYWLHMAVGADDDCPP", "length": 363, "header": "tr|A0A286ZR31-1|F1RX08_PIG Computationally mapped isoform of Ribonuclease P/MRP subunit p40 OS=Sus scrofa OX=9823 GN=RPP40 PE=4 SV=1 CANONICAL=F1RX08-1" }, "locus": { "chromosome": "7", "start_pos": 3005242, "end_pos": 2993123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045450.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045450.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034038.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034038.1" } ] } }, { "isoform_ac": "A0A287ANU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANU7/entry", "sequence": { "sequence": "MATLCRLREVPRHLLVCEKSNFGHDKSRHRHIVETHYYNYRVSFLIPECGILSKELKDLVMAFGPYYSVKDLPLHELITHEFINTFVKKGSCSALTYNANIDEDNAAALLPNGKLILSLDKDTYEETGLQGRPSRYSGRKIMKFSAEESTLMSYFSSYRIQEHRPKIAVSSVADLQCPVLRSSELGGQPDTACSALELFDWLGAVFSHAELNNEPDSFLSSYCCPQPSTVVARASLCTVTGFILPEKICLLLEQLCRYFDEPKLAPWVTLAVQGFADSPVSWRENEHGFRRGGEHLYNFVIFNNRDYWLHMAVGADDDCPP", "length": 321, "header": "tr|A0A287ANU7-1|A0A287ANU7_PIG Computationally mapped isoform of Ribonuclease P/MRP subunit p40 OS=Sus scrofa OX=9823 GN=RPP40 PE=4 SV=1 CANONICAL=F1RX08-1" }, "locus": { "chromosome": "7", "start_pos": 3005242, "end_pos": 2993123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062482.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062482.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045572.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045572.1" } ] } }, { "isoform_ac": "A0A5G2QID7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QID7/entry", "sequence": { "sequence": "MATLCRLREVPRHLLVCEKSNFGHDKSRHRHIVETHYYNYRVSFLIPECGILSKELKDLVMAFGPYYSVKDLPLHELITHEFINTFVKKGKLILSLDKDTYEETGLQGRPSRYSGRKIMKFIVSIDLMDLSFHPASKKYERVSWAFKEKKPLRFDFLLAWHQTGAEESTLMSYFSSYRIQEHRPKIAVSSVADLQCPVLRSSELGGQPDTACSALELFDWLGAVFSHAELNNEPDSFLSSYCCPQPSTVVARASLCTVTGFILPEKICLLLEQLCRYFDEPKLAPWVTLAVQGFADSPVSWRENEHGFRRGGEHLYNFVIFNNRDYWLHMAVGADDDCPP", "length": 340, "header": "tr|A0A5G2QID7-1|F1RX08_PIG Computationally mapped isoform of Ribonuclease P/MRP subunit p40 OS=Sus scrofa OX=9823 GN=RPP40 PE=4 SV=1 CANONICAL=F1RX08-1" }, "locus": { "chromosome": "7", "start_pos": 3005242, "end_pos": 2993123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072211.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072211.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061784.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061784.1" } ] } }, { "isoform_ac": "F1RX08-1", "url": "https://www.uniprot.org/uniprotkb/F1RX08/entry", "sequence": { "sequence": "MAFGPYYSVKDLPLHELITHEFINTFVKKGSCSALTYNANIDEDNAAALLPNGKLILSLDKDTYEETGLQGRPSRYSGRKIMKFIVSIDLMDLSFHPASKKYERVSWAFKEKKPLRFDFLLAWHQTGAEESTLMSYFSSYRIQEHRPKIAVSSVADLQCPVLRSSELGGQPDTACSALELFDWLGAVFSHAELNNEPDSFLSSYCCPQPSTVVARASLCTVTGFILPEKICLLLEQLCRYFDEPKLAPWVTLAVQGFADSPVSWRENEHGFRRGGEHLYNFVIFNNRDYWLHMAVGADDDCPP", "length": 303, "header": "tr|F1RX08-1|F1RX08_PIG Isoform 1 of Ribonuclease P/MRP subunit p40 OS=Sus scrofa OX=9823 GN=RPP40 PE=4 SV=2 CANONICAL=F1RX08-1" }, "locus": { "chromosome": "7", "start_pos": 3003514, "end_pos": 2993123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001088.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001088.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001066.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001066.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QID7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QID7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255215", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255215", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3GZ25-1", "protein_name": "Ribonuclease P protein subunit p40", "gene_name": "Rpp40", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATLRRLFAAPRHLMVCEKSNFGHEKSRHKQHVETHYHNYRVSFLIPECGLLPKELKSLAMEFGPYYSVKNLPLHELVTHEFIHTFVKKGSFSALTYNTNIDEDNTAALLPNGKLILSLNKDTYEETGLQGHPSRYSGRKPMKFIISIDLMDVNLDSKKYERITWSFKEKKPLKFDFLLAWYQTGTEESTIMSYFSKYQIEEHQPDVELSTVRELQCPVLQNDSLEGEPEEACTALEHFDWLGAVFCHTGLDNQPYNFISTYRCPQPSIVAAQASLCTIKGFILPEKIHVLLEQLCHYFDEPKLAPWLTLSVQGFADSPVSWRENEHGFQKGGEHLYNFVIFNNQDYWLQMAVGANDDCPP", "length": 361 }, "evidence": [ { "id": "F1RX08", "url": "https://omabrowser.org/oma/group/F1RX08/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O75818-1", "protein_name": "Ribonuclease P protein subunit p40", "gene_name": "RPP40", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATLRRLREAPRHLLVCEKSNFGNHKSRHRHLVQTHYYNYRVSFLIPECGILSEELKNLVMNTGPYYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALLPNGKLILSLDKDTYEETGLQGHPSQFSGRKIMKFIVSIDLMELSLNLDSKKYERISWSFKEKKPLKFDFLLAWHKTGSEESTMMSYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRALELFDWLGAVFSNVDLNNEPNNFISTYCCPEPSTVVAKAYLCTITGFILPEKICLLLEHLCHYFDEPKLAPWVTLSVQGFADSPVSWEKNEHGFRKGGEHLYNFVIFNNQDYWLQMAVGANDHCPP", "length": 363 }, "evidence": [ { "id": "F1RX08", "url": "https://omabrowser.org/oma/group/F1RX08/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54W23-1", "protein_name": "RNase P protein subunit", "gene_name": "drpp40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSIINNEVPNNKILLKRITVDPNDKEQIENFNKNFITNHVFNQKVEIILPIKKGANEEVEEDNNNESDKKSQQKPKAKGSLLSQASSSYLLVEGEFTSLFQEQSITPLPSSSNNKSLDGINTKQLYYQIETTLDLLLSHEFIDKYIKNGGFYAISQLNFIDSGNVVAFLPNSKIILNVDKETYQELGLLGKSSVFKNLQRYIITLDMTSKEYQRGSKSYTRLIWSLKDRLSSINLICFYQKLNSTQLQSIDFPQGVKVLPSYNQPTQEILNLRLPTLNIINENLNINNSNNDIKMIYNDFINEWVEVLGFASLGINLNQVKDFEIGNSLLSQCPIATKCLKATQKGLVSNSFILELIEKIKLMLSKGLIEYGVLNIYGFADTPISWNSIEHNFLYGGENDQSLLILPNNKFISSNLIGTYDYYC", "length": 424 }, "evidence": [ { "id": "F1RX08", "url": "https://omabrowser.org/oma/group/F1RX08/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5BK64-1", "protein_name": "Ribonuclease P protein subunit p40", "gene_name": "Rpp40", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATLRRLQEAPRHLLVCEKSNFGHDKSRHKHLVETHYHNYRVSFLIPECGLLSKKLKDLVMEMGPYYSVKKLPLHELITHEFINTFVKKGSLSALTYNTSIDEDNTVALLPNGKLILSLDKDTYEETGLQGHPSRYSGRKSMRFIISIDLMDLSLNLDSKKYRRISWSFKEKKPLKFDFLLAWHHTGTEESTMMSYFSKYQIREHQPKVALSTVRDLQCPVLQSSSLAGEPEEACNALEFFDWLGAVFCNADLNNEPHNFISTYCCPQPNTVAAQACLCTITGFVLPEKILVLLEQLCHYFDEPKLAPWVTLTVQGFADSPVAWREKEHGFHKGGEHLYNFVVFNNQDYWLQMAVGANDDCPP", "length": 363 }, "evidence": [ { "id": "F1RX08", "url": "https://omabrowser.org/oma/group/F1RX08/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R1F9-1", "protein_name": "Ribonuclease P protein subunit p40", "gene_name": "Rpp40", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATLRRLQEAPRHLLVCEKSNFGHDKSRHKHLVETHYHNYRVSFLIPECGLLSKELKSLVMDIGPYYSVKNLPLHELITHEFINTFVKKGSFSALTYNTSIDEDNTVALLPNGKLILSLDKDTYEETGLQGRPSRYSGRKSMKFVISIDLMDLSLNLDSKKYRRISWSFKEKKPLKFDFLLAWHPTGTEESTMMSYFSKYQIQEHQPKVALSTVRELQCPVLRSSGLAGEPEEACSALEFFDWLGAVFCSADLNNEPYNFISTYCCPQPSAVVAQAFLCTITGFILPEKIHVLLEQLCHYFDEPKLAPWVTLTVQGFADSPVAWREKEHGFHKGGEHLYNFVVFNNQDYWLQMAVGANDDCPP", "length": 363 }, "evidence": [ { "id": "F1RX08", "url": "https://omabrowser.org/oma/group/F1RX08/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "multimeric ribonuclease P complex", "id": "GO:0030681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030681", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" }, { "name": "ribonuclease MRP complex", "id": "GO:0000172", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000172", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" }, { "name": "ribonuclease P complex", "id": "GO:0030677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030677", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000447", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000447", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" }, { "name": "tRNA 5'-leader removal", "id": "GO:0001682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001682", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ribonuclease P activity", "id": "GO:0004526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004526", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" }, { "name": "ribonuclease P RNA binding", "id": "GO:0033204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033204", "evidence": [ { "database": "UniProtKB", "id": "F1RX08", "url": "https://www.uniprot.org/uniprotkb/F1RX08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RX08-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 303, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RX08-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RX08" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RY61-1", "uniprot_ac": "F1RY61", "uniprot_id": "F1RY61_PIG", "mass": { "chemical_mass": 47580.0, "monoisotopic_mass": 47580.0 }, "refseq": { "ac": "XP_001929306", "name": "transcription termination factor 3, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929306" }, "gene_names": [ { "name": "MTERF3", "type": "recommended", "evidence": [ { "id": "F1RY61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ] }, { "name": "MTERF3", "type": "synonym", "evidence": [ { "id": "XP_001929306", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929306" } ] } ], "protein_names": [ { "name": "Transcription termination factor 3, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1RY61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RY61/entry#names_and_taxonomy" } ] }, { "name": "Mitochondrial transcription termination factor 3", "type": "synonym", "evidence": [ { "id": "F1RY61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RY61/entry#names_and_taxonomy" } ] }, { "name": "mTERF domain-containing protein 1, mitochondrial", "type": "synonym", "evidence": [ { "id": "F1RY61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RY61/entry#names_and_taxonomy" } ] }, { "name": "transcription termination factor 3, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001929306", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929306" } ] } ], "function": [ { "annotation": "Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription and translation, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function. Maintains 16S rRNA levels and functions in mitochondrial ribosome assembly by regulating the biogenesis of the 39S ribosomal subunit.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BLV9", "url": "https://www.uniprot.org/uniprotkb/A0A287BLV9#function" }, { "database": "UniProtKB", "id": "ARBA00059336", "url": "https://www.uniprot.org/uniprotkb/ARBA00059336#function" }, { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTERF3", "url": "https://www.uniprot.org/uniprotkb/F1RY61", "locus": { "chromosome": "4", "start_pos": 40399609, "end_pos": 40376187, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006090", "url": "https://www.ensembl.org/id/ENSSSCG00000006090" } ] } } ], "crossref": [ { "id": "F1RY61", "url": "https://alphafold.ebi.ac.uk/entry/F1RY61", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006090", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006090", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152384", "url": "https://www.ncbi.nlm.nih.gov/gene/100152384", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152384", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152384", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFNTRVF", "url": "https://omabrowser.org/oma/group/VFNTRVF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BLV9", "url": "https://www.orthodb.org/?gene=A0A287BLV9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RY61", "url": "https://www.orthodb.org/?gene=F1RY61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13068:SF194", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13068:SF194", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5205685", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5205685", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929306", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929306", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZS26", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZS26-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLV9", "url": "https://www.uniprot.org/uniprotkb/A0A287BLV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RY61-1", "url": "https://www.uniprot.org/uniprotkb/F1RY61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSAQQIPRWLKLSGFITAAQLRARFQRPGRTLLHGCVAQPQLSSDNCFLQWGFKTYRTSSLWNSSQSTNSSRQEINSAQSTLLPSVNEESPKTQKTPNIDSELSLEGLDDLPALSPLQPVSEEEAIRIIADPPLPPSSFTLRDYVDHSETLQKLVLLGVDLSKIEKHPDAANLLLRLDFEKDIKQILLFLKDLGMEDNQLGTFLTKNYAIFSEDLENLKTRVAYLQSKNFSKADIAQMVRNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLIIRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVHNVMRIPHHVIVRFPQVFNTRLFKIKERHLFLAYLGRAQYDPAKPNYISLDKLVSMPDEIFCEEMAKASVQDFEKFLKTL", "length": 414, "header": "tr|F1RY61-1|F1RY61_PIG Isoform 1 of Transcription termination factor 3, mitochondrial OS=Sus scrofa OX=9823 GN=MTERF3 PE=3 SV=3 CANONICAL=F1RY61-1" }, "isoforms": [ { "isoform_ac": "A0A286ZS26-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS26/entry", "sequence": { "sequence": "MALSAQQIPRWLKLSGFITAAQLRARFQRPGRTLLHGCVAQPQLSSDNCFLQWGFKTYRTSSLWNSSQSTNSSRQEINSAQSTLLPSVNEESPKTQKTPNIDSELSLEGLDDLPALSPLQPVSEEEAIRIIADPPLPPSSFTLRDYVDHSETLQKLVLLGVDLSKIEKHPDAANLLLRLDFEKDIKQILLFLKDLGMEDNQLGTFLTKNYAIFSEDLENLKTRVAYLQSKNFSKADIAQMVRNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLIIRLPRLLTGSLEPVKENMKVFNTRLFKIKERHLFLAYLGRAQYDPAKPNYISLDKLVSMPDEIFCEEMAKASVQDFEKFLKTL", "length": 360, "header": "tr|A0A286ZS26-1|F1RY61_PIG Computationally mapped isoform of Transcription termination factor 3, mitochondrial OS=Sus scrofa OX=9823 GN=MTERF3 PE=3 SV=1 CANONICAL=F1RY61-1" }, "locus": { "chromosome": "4", "start_pos": 40399541, "end_pos": 40379798, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041831.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041831.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034377.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034377.2" } ] } }, { "isoform_ac": "A0A287BLV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLV9/entry", "sequence": { "sequence": "MALSAQQIPRWLKLSGFITAAQLRARFQRPGRTLLHGCVAQPQLSSDNCFLQWGFKTYRTSSLWNSSQSTNSSRQEINSAQSTLLPSVNEESPKTQKTPNIDSELSLEGLDDLPALSPLQPVSEEEAIRIIADPPLPPSSFTLRDYVDHSETLQKLVLLGVDLSKIEKHPDAANLLLRLDFEKDIKQILLFLKDLGMEDNQLGTFLTKNYAIFSEDLENLKTSTSVNLFGLHSAFKECIDSVRTDRVREHRCVRVAYLQSKNFSKADIAQMVRNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLIIRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVHNVMRIPHHVIVRFPQVFNTRLFKIKERHLFLAYLGRAQYDPAKPNYISLDKLVSMPDEIFCEEMAKASVQDFEKFLKTL", "length": 445, "header": "tr|A0A287BLV9-1|A0A287BLV9_PIG Computationally mapped isoform of Transcription termination factor 3, mitochondrial OS=Sus scrofa OX=9823 GN=MTERF3 PE=3 SV=2 CANONICAL=F1RY61-1" }, "locus": { "chromosome": "4", "start_pos": 40399541, "end_pos": 40379798, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048089.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048089.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057605.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057605.2" } ] } }, { "isoform_ac": "F1RY61-1", "url": "https://www.uniprot.org/uniprotkb/F1RY61/entry", "sequence": { "sequence": "MALSAQQIPRWLKLSGFITAAQLRARFQRPGRTLLHGCVAQPQLSSDNCFLQWGFKTYRTSSLWNSSQSTNSSRQEINSAQSTLLPSVNEESPKTQKTPNIDSELSLEGLDDLPALSPLQPVSEEEAIRIIADPPLPPSSFTLRDYVDHSETLQKLVLLGVDLSKIEKHPDAANLLLRLDFEKDIKQILLFLKDLGMEDNQLGTFLTKNYAIFSEDLENLKTRVAYLQSKNFSKADIAQMVRNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLIIRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVHNVMRIPHHVIVRFPQVFNTRLFKIKERHLFLAYLGRAQYDPAKPNYISLDKLVSMPDEIFCEEMAKASVQDFEKFLKTL", "length": 414, "header": "tr|F1RY61-1|F1RY61_PIG Isoform 1 of Transcription termination factor 3, mitochondrial OS=Sus scrofa OX=9823 GN=MTERF3 PE=3 SV=3 CANONICAL=F1RY61-1" }, "locus": { "chromosome": "4", "start_pos": 40399541, "end_pos": 40379798, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006681.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006681.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006501.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006501.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZS26", "url": "https://www.uniprot.org/uniprotkb/A0A286ZS26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152384", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152384", "resource": "KEGG Pathway" }, { "id": "R-SSC-5205685", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5205685", "resource": "Reactome", "description": "PINK1-PRKN Mediated Mitophagy" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7GJ46-1", "protein_name": "Transcription termination factor 3, mitochondrial", "gene_name": "Mterf3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALLLGQIPRWFNSIKLSSFIKASQITKQSARPGKTLSNGFSPQALLLSSDNCFLQWEIKTYRTSSLWNSFQSANSNRQENSSLQSTLLPSVSEKPEIIPSLESELPLEELDDLPPLSPMQPISEEEAIQIVAHPLLPLSSFTLGDYIDHSETLQRLVQLGGQSCAQGILCQPASRQLLPEQRKGQKGERGVDLSKIERHVDAANLLLRLDFEKDIKQILLFLKDLGLEDNQLGPFLTKNYSIFSEDLENLKTRVAYLQSKNFTKADIARMVRNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKQNEIQHMVTRIPKMLTANKRKLTETFDYIHNVMNIPHHIIVKFPQVFNTRVFKIKERHSFLAYLGKAQYDPAKTNYVSLDKFVSIPDEVFCKEIAKTSVDDFEKFLKTL", "length": 445 }, "evidence": [ { "id": "F1RY61", "url": "https://omabrowser.org/oma/group/F1RY61/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6P6Q6-1", "protein_name": "Transcription termination factor 3, mitochondrial", "gene_name": "Mterf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLAQQLSRWFNSVKLSSFIKATQVTKHSAGLGKNASAQALLSSDTCFLQWGIKTDRALFSWSSFQSANTTRRKSSTNSTLLPSVSEQPEKIPRLESELPLEELDDLPPLSPLQPVSEEEAIQIAAYSPLPLSSSTLADYVDHSETLQKLVQLGVDLSKIEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKIKERHLFLAYLGKAQYDPAKPNYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL", "length": 409 }, "evidence": [ { "id": "F1RY61", "url": "https://omabrowser.org/oma/group/F1RY61/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R3J4-1", "protein_name": "Transcription termination factor 3, mitochondrial", "gene_name": "Mterf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALLAQQLPRRFNSVKLTSFIKAKQVTKRSARAGKAVLPGFSAQPLLSSDTSFLRRGIKTYRTLFWNRFHSASTNRTKSSAESTLLPSVAEQQERILSLESELPLEEVDDLPPLSPLQSVSEEEAIQIAAYSPLPISSFTLADYVDHSKTLQKLVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVFKIKERHLFLAYLGRAQYDPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL", "length": 412 }, "evidence": [ { "id": "F1RY61", "url": "https://omabrowser.org/oma/group/F1RY61/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96E29-1", "protein_name": "Transcription termination factor 3, mitochondrial", "gene_name": "MTERF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALSAQQIPRWFNSVKLRSLINAAQLTKRFTRPARTLLHGFSAQPQISSDNCFLQWGFKTYRTSSLWNSSQSTSSSSQENNSAQSSLLPSMNEQSQKTQNISSFDSELFLEELDELPPLSPMQPISEEEAIQIIADPPLPPASFTLRDYVDHSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFEKFLKTL", "length": 417 }, "evidence": [ { "id": "F1RY61", "url": "https://omabrowser.org/oma/group/F1RY61/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" }, { "name": "mitochondrial ribosome assembly", "id": "GO:0061668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061668", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" }, { "name": "regulation of mitochondrial transcription", "id": "GO:1903108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903108", "evidence": [ { "database": "UniProtKB", "id": "F1RY61", "url": "https://www.uniprot.org/uniprotkb/F1RY61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RY61-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 414, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RY61-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RY61" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 231, "end_pos": 233 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S3C8-1", "uniprot_ac": "F1S3C8", "uniprot_id": "F1S3C8_PIG", "mass": { "chemical_mass": 138870.0, "monoisotopic_mass": 138870.0 }, "refseq": {}, "gene_names": [ { "name": "PHLPP2", "type": "recommended", "evidence": [ { "id": "F1S3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ] } ], "protein_names": [ { "name": "PH domain leucine-rich repeat-containing protein phosphatase 2", "type": "recommended", "evidence": [ { "id": "F1S3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3C8/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.16", "type": "synonym", "evidence": [ { "id": "F1S3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3C8/entry#names_and_taxonomy" } ] }, { "name": "PH domain leucine-rich repeat-containing protein phosphatase-like", "type": "synonym", "evidence": [ { "id": "F1S3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3C8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Protein phosphatase involved in regulation of Akt and PKC signaling. Mediates dephosphorylation in the C-terminal domain hydrophobic motif of members of the AGC Ser/Thr protein kinase family; specifically acts on 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. Akt regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of Akt triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylates STK4 on 'Thr-387' leading to STK4 activation and apoptosis. Dephosphorylates RPS6KB1 and is involved in regulation of cap-dependent translation. Inhibits cancer cell proliferation and may act as a tumor suppressor. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Dephosphorylates RAF1 inhibiting its kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "I3LHG3", "url": "https://www.uniprot.org/uniprotkb/I3LHG3#function" }, { "database": "UniProtKB", "id": "ARBA00058248", "url": "https://www.uniprot.org/uniprotkb/ARBA00058248#function" }, { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHLPP2", "url": "https://www.uniprot.org/uniprotkb/F1S3C8", "locus": { "chromosome": "6", "start_pos": 14633751, "end_pos": 14715965, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002739", "url": "https://www.ensembl.org/id/ENSSSCG00000002739" } ] } } ], "crossref": [ { "id": "F1S3C8", "url": "https://alphafold.ebi.ac.uk/entry/F1S3C8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002739", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002739", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00143", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00143", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13322", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13322", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17241", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17241", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100628113", "url": "https://www.ncbi.nlm.nih.gov/gene/100628113", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100628113", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628113", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3LHG3", "url": "https://www.orthodb.org/?gene=I3LHG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "20629", "url": "https://www.rhea-db.org/rhea/20629", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47004", "url": "https://www.rhea-db.org/rhea/47004", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3C8-1", "url": "https://www.uniprot.org/uniprotkb/F1S3C8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHG3", "url": "https://www.uniprot.org/uniprotkb/I3LHG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHG3-1", "url": "https://www.uniprot.org/uniprotkb/I3LHG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRNGSRNCLNRRSRFGSRERDWLREDVKRGCVYLYGADTTTATPTSTSASASSSDLHLVLCTVETPASEICAGEGKESLYLQLHGDLVRRLEPTERPLQIVYDYLSRLGFDDPLRIQEEAANPDLGCMLRFYGEKPCQMDHLDRILLSGIYNVRKGKTQLHKWAERLVVLCGTCLIVSSVKDCQTGKMHILPLVGGKVEEVKRRQFSLAFSSAGAQAQTYHVSFETLAEYQRWQRQASKVVSQRISTVDLSCHSLEEVPEHLFYSQDITYLNLRHNFMQLERPGGLDTFYKFSQLKGLNLSHNKLGLFPVLLCEISTLTELNLSCNGFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPEVYEKLTMLDKVVMAGNRLEVLDLGLLNRMSHIKHVDFRMNHLKTMVIENLEGNKYITHMDLRDNQLTDLDLSSLCNLEQLHCERNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSLLTSLELSRNLLECVPDWACEAKKLEILDVSHNLLTEVPMRILSSLSLRKLMLGHNHVQNLPALVEHIPLEVLDIQHNLFTRLPETLFSKALNKLNKLEQLEELNLSGNKLKTIPTTIANCRRLHTLVAHSNNISIFPEILQLPQIQFVDLSCNDLTEILIPEALPATLQDLDLTGNTNLVLEHKTLDTFSHITTLKIDQKPLPTTDSTVTSTFWSHGLAEMAGQRNKLCVSALAVDTFAEGVGAVYGMFDGDRNEELPRLLQCTMADVLLEEVQQSTNDTVFMAHTFLVSHRKLGMAGQKLGSSALLCYIRPDTADPTSSFSLTVANVGTCQAVLCRSGKPVPLSKVFSLEQDPEEAQRVKDQKAIITEDNKVNGVTCCTRMLGCTYLYPWILPKPHIASTPLTIQDELLILGNRALWEHLSYAEAVNAVRHVQDPLAAAKKLCTLAQSYGCQDNVGAMVVYLNIAEEGCTCEMNGLTLPGPVGFPSTALIKDPPKPTTPSSSSGIASEFSSEMSTSEVSSEVGSTASDEHNTAGLEAGLLPRPERRCSLHPAPATGVFQRQPSCATFSSNQSDNGLDSDDDQPVEGVISNGSRVEVEVDVHCCRGRDLESSPTLPQRAPTPCHEERARGLVLGIRRQNSVNSGILLPGSKDKAELQKSPSTSCLYGKKLSNGSVVPLEDSLNLIEVATEAPKKKTGYFAAPTQLEPEDQFVVPRDLEEEVKEQMKHHQESRPKPEPSDEDRTELPEEFDTAL", "length": 1251, "header": "tr|F1S3C8-1|F1S3C8_PIG Isoform 1 of PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Sus scrofa OX=9823 GN=PHLPP2 PE=4 SV=4 CANONICAL=F1S3C8-1" }, "isoforms": [ { "isoform_ac": "F1S3C8-1", "url": "https://www.uniprot.org/uniprotkb/F1S3C8/entry", "sequence": { "sequence": "MKRNGSRNCLNRRSRFGSRERDWLREDVKRGCVYLYGADTTTATPTSTSASASSSDLHLVLCTVETPASEICAGEGKESLYLQLHGDLVRRLEPTERPLQIVYDYLSRLGFDDPLRIQEEAANPDLGCMLRFYGEKPCQMDHLDRILLSGIYNVRKGKTQLHKWAERLVVLCGTCLIVSSVKDCQTGKMHILPLVGGKVEEVKRRQFSLAFSSAGAQAQTYHVSFETLAEYQRWQRQASKVVSQRISTVDLSCHSLEEVPEHLFYSQDITYLNLRHNFMQLERPGGLDTFYKFSQLKGLNLSHNKLGLFPVLLCEISTLTELNLSCNGFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPEVYEKLTMLDKVVMAGNRLEVLDLGLLNRMSHIKHVDFRMNHLKTMVIENLEGNKYITHMDLRDNQLTDLDLSSLCNLEQLHCERNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSLLTSLELSRNLLECVPDWACEAKKLEILDVSHNLLTEVPMRILSSLSLRKLMLGHNHVQNLPALVEHIPLEVLDIQHNLFTRLPETLFSKALNKLNKLEQLEELNLSGNKLKTIPTTIANCRRLHTLVAHSNNISIFPEILQLPQIQFVDLSCNDLTEILIPEALPATLQDLDLTGNTNLVLEHKTLDTFSHITTLKIDQKPLPTTDSTVTSTFWSHGLAEMAGQRNKLCVSALAVDTFAEGVGAVYGMFDGDRNEELPRLLQCTMADVLLEEVQQSTNDTVFMAHTFLVSHRKLGMAGQKLGSSALLCYIRPDTADPTSSFSLTVANVGTCQAVLCRSGKPVPLSKVFSLEQDPEEAQRVKDQKAIITEDNKVNGVTCCTRMLGCTYLYPWILPKPHIASTPLTIQDELLILGNRALWEHLSYAEAVNAVRHVQDPLAAAKKLCTLAQSYGCQDNVGAMVVYLNIAEEGCTCEMNGLTLPGPVGFPSTALIKDPPKPTTPSSSSGIASEFSSEMSTSEVSSEVGSTASDEHNTAGLEAGLLPRPERRCSLHPAPATGVFQRQPSCATFSSNQSDNGLDSDDDQPVEGVISNGSRVEVEVDVHCCRGRDLESSPTLPQRAPTPCHEERARGLVLGIRRQNSVNSGILLPGSKDKAELQKSPSTSCLYGKKLSNGSVVPLEDSLNLIEVATEAPKKKTGYFAAPTQLEPEDQFVVPRDLEEEVKEQMKHHQESRPKPEPSDEDRTELPEEFDTAL", "length": 1251, "header": "tr|F1S3C8-1|F1S3C8_PIG Isoform 1 of PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Sus scrofa OX=9823 GN=PHLPP2 PE=4 SV=4 CANONICAL=F1S3C8-1" }, "locus": { "chromosome": "6", "start_pos": 14708327, "end_pos": 14637941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003035.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003035.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002956.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002956.4" } ] } }, { "isoform_ac": "I3LHG3-1", "url": "https://www.uniprot.org/uniprotkb/I3LHG3/entry", "sequence": { "sequence": "MGEVEPGPAGPLEPPEPPEAPASRRLGGIRVLKRNMKRNGSRNCLNRRSRFGSRERDWLREDVKRGCVYLYGADTTTATPTSTSASASSSDLHLVLCTVETPASEICAGEGKESLYLQLHGDLVRRLEPTERPLQIVYDYLSRLGFDDPLRIQEEAANPDLGCMLRFYGEKPCQMDHLDRILLSGIYNVRKGKTQLHKWAERLVVLCGTCLIVSSVKDCQTGKMHILPLVGGKVEEVKRRQFSLAFSSAGAQAQTYHVSFETLAEYQRWQRQASKVVSQRISTVDLSCHSLEEVPEHLFYSQDITYLNLRHNFMQLERPGGLDTFYKFSQLKGLNLSHNKLGLFPVLLCEISTLTELNLSCNGFHDLPSQIGNLLNLQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPEVYEKLTMLDKVVMAGNRLEVLDLGLLNRMSHIKHVDFRMNHLKTMVIENLEGNKYITHMDLRDNQLTDLDLSSLCNLEQLHCERNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSLLTSLELSRNLLECVPDWACEAKKLEILDVSHNLLTEVPMRILSSLSLRKLMLGHNHVQNLPALVEHIPLEVLDIQHNLFTRLPETLFSKALNLRYLNASANSLESLPPACAGEESLSALQLLYLTNNLLTDQCVPVLVGHPHLRILHLANNQLQTFPASKLNKLEQLEELNLSGNKLKTIPTTIANCRRLHTLVAHSNNISIFPEILQLPQIQFVDLSCNDLTEILIPEALPATLQDLDLTGNTNLVLEHKTLDTFSHITTLKIDQKPLPTTDSTVTSTFWSHGLAEMAGQRNKLCVSALAVDTFAEGVGAVYGMFDGDRNEELPRLLQCTMADVLLEEVQQSTNDTVFMAHTFLVSHRKLGMAGQKLGSSALLCYIRPDTADPTSSFSLTVANVGTCQAVLCRSGKPVPLSKVFSLEQDPEEAQRVKDQKAIITEDNKVNGVTCCTRMLGCTYLYPWILPKPHIASTPLTIQDELLILGNRALWEHLSYAEAVNAVRHVQDPLAAAKKLCTLAQSYGCQDNVGAMVVYLNIAEEGCTCEMNGLTLPGPVGFPSTALIKDPPKPTTPSSSSGIASEFSSEMSTSEVSSEVGSTASDEHNTAGLEAGLLPRPERRCSLHPAPATGVFQRQPSCATFSSNQSDNGLDSDDDQPVEGVISNGSRVEVEVDVHCCRGRDLESSPTLPQRAPTPCHEERARGLVLGIRRQNSVNSGILLPGSKDKAELQKSPSTSCLYGKKLSNGSVVPLEDSLNLIEVATEAPKKKTGYFAAPTQLEPEDQFVVPRDLEEEVKEQMKHHQESRPKPEPSDEDRTELPEEFDTAL", "length": 1353, "header": "tr|I3LHG3-1|F1S3C8_PIG Computationally mapped isoform of PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Sus scrofa OX=9823 GN=PHLPP2 PE=4 SV=2 CANONICAL=F1S3C8-1" }, "locus": { "chromosome": "6", "start_pos": 14715870, "end_pos": 14637941, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024128.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024128.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023509.2", "url": "https://www.ensembl.org/id/ENSSSCP00000023509.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LHG3", "url": "https://www.uniprot.org/uniprotkb/I3LHG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100628113", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100628113", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" }, { "name": "intercellular bridge", "id": "GO:0045171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045171", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1S3C8", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1069, "end_pos": 1071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1089, "end_pos": 1091, "annotation": "n_glycosylation_sequon" }, { 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"https://www.rhea-db.org/rhea/20629" } ] }, { "id": "47004", "name": "", "equation": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47004", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47004" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S3C8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1251, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S3C8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S3C8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3C8" }, { "id": "PS50003", "database": "PROSITE", "url": 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{ "id": "IPR039283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34441", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34441", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34441:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34441:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00635", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00635", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480WV56", "url": "https://www.uniprot.org/uniprotkb/A0A480WV56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480WV56-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WV56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RTD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMR4", "url": "https://www.uniprot.org/uniprotkb/K7GMR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GMR4-1", "url": "https://www.uniprot.org/uniprotkb/K7GMR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHQQKRQPELVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPNKYVVVDAAGAVKPQCCVDIVIRHRDVRSCHYGVIDKFRLQVSEQSQRKALGRKEVVATLLPSAKEQQKEEEEKRIKEHLTESLFFEQSFQPGKNRTVSSGPSLLTVFLGVVCIAALMLPTLGDVESLVPLYLHLSVNQKLVAAYILGLITMAILRT", "length": 214, "header": "tr|F1RTD4-1|F1RTD4_PIG Isoform 1 of Motile sperm domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MOSPD1 PE=1 SV=3 CANONICAL=F1RTD4-1" }, "isoforms": [ { "isoform_ac": "A0A480WV56-1", "url": "https://www.uniprot.org/uniprotkb/A0A480WV56/entry", "sequence": { "sequence": "MHQQKRQPELVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPNKYVVVDAAGAVKPQCCVDIVIRHRDVRSCHYGVIDKFRLQVSEQSQRKALGRKEVVATLLPSAKEQQKEEEEKRIKEHLTESLFFEQSFQPGSLGCFSSPFEVFL", "length": 163, "header": "tr|A0A480WV56-1|A0A480WV56_PIG Computationally mapped isoform of Motile sperm domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MOSPD1 PE=1 SV=1 CANONICAL=F1RTD4-1" }, "locus": { "chromosome": "X", "start_pos": 110704550, "end_pos": 110702538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046080.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046080.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038634.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038634.2" } ] } }, { "isoform_ac": "F1RTD4-1", "url": "https://www.uniprot.org/uniprotkb/F1RTD4/entry", "sequence": { "sequence": "MHQQKRQPELVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPNKYVVVDAAGAVKPQCCVDIVIRHRDVRSCHYGVIDKFRLQVSEQSQRKALGRKEVVATLLPSAKEQQKEEEEKRIKEHLTESLFFEQSFQPGKNRTVSSGPSLLTVFLGVVCIAALMLPTLGDVESLVPLYLHLSVNQKLVAAYILGLITMAILRT", "length": 214, "header": "tr|F1RTD4-1|F1RTD4_PIG Isoform 1 of Motile sperm domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MOSPD1 PE=1 SV=3 CANONICAL=F1RTD4-1" }, "locus": { "chromosome": "X", "start_pos": 110704550, "end_pos": 110694973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013868.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013868.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013485.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013485.3" } ] } }, { "isoform_ac": "K7GMR4-1", "url": "https://www.uniprot.org/uniprotkb/K7GMR4/entry", "sequence": { "sequence": "MHQQKRQPELVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPNKYVVVDAAGAVKPQCCVDIVIRHRDVRSCHYGVIDKFRLQVSEQSQRKALGRKEVVATLLPSAKEQQKEEEEKRIKEHLTESLFFEQSFQPGKNRTVSSGPSLLTVFLGVVCIAALMLPTLGDVESLVPLYLHLSVNQKLVAAYILGDLLITMNFLKN", "length": 216, "header": "tr|K7GMR4-1|F1RTD4_PIG Computationally mapped isoform of Motile sperm domain-containing protein 1 OS=Sus scrofa OX=9823 GN=MOSPD1 PE=1 SV=2 CANONICAL=F1RTD4-1" }, "locus": { "chromosome": "X", "start_pos": 110704550, "end_pos": 110696975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033726.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033726.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029160.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029160.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GMR4", "url": "https://www.uniprot.org/uniprotkb/K7GMR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1RTD4", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RTD4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 214, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RTD4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RTD4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RTD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTD4" }, { "id": "PS50202", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50202" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MSP", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 143, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"uniprot_canonical_ac": "F1RQT0-1", "uniprot_ac": "F1RQT0", "uniprot_id": "F1RQT0_PIG", "mass": { "chemical_mass": 38702.0, "monoisotopic_mass": 38702.0 }, "refseq": { "ac": "XP_003122615", "name": "SAC3 domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122615" }, "gene_names": [ { "name": "SAC3D1", "type": "recommended", "evidence": [ { "id": "F1RQT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ] }, { "name": "SAC3D1", "type": "synonym", "evidence": [ { "id": "XP_003122615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122615" } ] } ], "protein_names": [ { "name": "SAC3 domain containing 1", "type": "synonym", "evidence": [ { "id": "F1RQT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQT0/entry#names_and_taxonomy" } ] }, { "name": "SAC3 domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_003122615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122615" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SAC3D1", "url": "https://www.uniprot.org/uniprotkb/F1RQT0", "locus": { "chromosome": "2", "start_pos": 7138413, "end_pos": 7141898, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013011", "url": "https://www.ensembl.org/id/ENSSSCG00000013011" } ] } } ], "crossref": [ { "id": "F1RQT0", "url": "https://alphafold.ebi.ac.uk/entry/F1RQT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013011", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013011", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519293", "url": "https://www.ncbi.nlm.nih.gov/gene/100519293", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519293", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519293", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFTHAYN", "url": "https://omabrowser.org/oma/group/IFTHAYN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RQT0", "url": "https://www.orthodb.org/?gene=F1RQT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12436", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12436", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12436:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12436:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03399", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03399", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122615", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122615", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FG62", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG62-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQT0-1", "url": "https://www.uniprot.org/uniprotkb/F1RQT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGSPGDRPRADPQRAVKEYSRPAAGKARPPPSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFVADRLRAVRLDLALQGAGDAEAALVLEAALAVLLAVVARLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQATFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQSCAVQCHVGRARRGALARLARALSTPKGQTVPLGFMVHLLALDGPEEARDLCQAHGLPLDGQERVVFLRGRYREEGPPPAGTCQMLVESKLGGRTLEEVVMAEEEDEAVNRPESPA", "length": 358, "header": "tr|F1RQT0-1|F1RQT0_PIG Isoform 1 of SAC3 domain containing 1 OS=Sus scrofa OX=9823 GN=SAC3D1 PE=4 SV=3 CANONICAL=F1RQT0-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FG62-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG62/entry", "sequence": { "sequence": "MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGSPGDRPRADPQRAVKEYSRPAAGKARPPPSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFVADRLRAVRLDLALQGAGDAEAALVLEAALAVLLAVVARLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQATFQGLFLLYNLGELGLSRAQGQASLGTVKAPWRPFTRFCSCRPPCVPARRCAPPWQW", "length": 237, "header": "tr|A0A8W4FG62-1|F1RQT0_PIG Computationally mapped isoform of SAC3 domain containing 1 OS=Sus scrofa OX=9823 GN=SAC3D1 PE=4 SV=1 CANONICAL=F1RQT0-1" }, "locus": { "chromosome": "2", "start_pos": 7141595, "end_pos": 7138932, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104388.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104388.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078419.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078419.1" } ] } }, { "isoform_ac": "F1RQT0-1", "url": "https://www.uniprot.org/uniprotkb/F1RQT0/entry", "sequence": { "sequence": "MPGYELPLGTCLDMCPANERTRREKECRLHRFEVAPGSPGDRPRADPQRAVKEYSRPAAGKARPPPSQLRPPSVLLATVRYLAGEVAERTDASRAEVASFVADRLRAVRLDLALQGAGDAEAALVLEAALAVLLAVVARLEPNASHGLADPMLLQAQVQESFGSLRRCYALGAGPHPRQATFQGLFLLYNLGSVEALHEVLQLPAALRSCPALRTALAVDSAFREGNAARLFRLLRSLPYLQSCAVQCHVGRARRGALARLARALSTPKGQTVPLGFMVHLLALDGPEEARDLCQAHGLPLDGQERVVFLRGRYREEGPPPAGTCQMLVESKLGGRTLEEVVMAEEEDEAVNRPESPA", "length": 358, "header": "tr|F1RQT0-1|F1RQT0_PIG Isoform 1 of SAC3 domain containing 1 OS=Sus scrofa OX=9823 GN=SAC3D1 PE=4 SV=3 CANONICAL=F1RQT0-1" }, "locus": { "chromosome": "2", "start_pos": 7141595, "end_pos": 7138516, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014222.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014222.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013836.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013836.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FG62", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519293", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519293", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6H687-1", "protein_name": "SAC3 domain-containing protein 1", "gene_name": "Sac3d1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRFKGENRSQARWIMGGVSKGRGSGKSRKPRQAAFGQTGARVCPSSPQQDAVPRFRWPGDAECASSTHTPTMSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPGGRGNAPRADPKRTVKEYSRPAAGKPRPPPSLLRPPPVLLATVRYLAGEVAGRGDVSCAEVASFVADRLRAVRLDLSLQGVDDADAATVLEAALATLLAVVARVRPEETRGAADPVLLQTQVQEGFGSLRRCYARGKGPYPRQAAFQGLFLLYNLGSVEALQEVLQLPAALRACPPLQAALAVDAAFREDNHARLFRLLRTLPYLQSCAVQEHIGYARRKALARLSRALSTPKGQTLPLDFIEHFLALDGLQEARDLCQAHGLTLDKDRVVFLRGQYSEEGLPPPGAYHILVGNKLQGHTLEDVVMAEEGDIHRPGSAA", "length": 427 }, "evidence": [ { "id": "F1RQT0", "url": "https://omabrowser.org/oma/group/F1RQT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A6NKF1-1", "protein_name": "SAC3 domain-containing protein 1", "gene_name": "SAC3D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGRRAQTGSAPPRPAAPHPRPASRAFPQHCRPRDAERPPSPRSPLMPGCELPVGTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPPRADPQRAVKEYSRPAAGKPRPPPSQLRPPSVLLATVRYLAGEVAESADIARAEVASFVADRLRAVLLDLALQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQVQEGFGSLRRCYARGAGPHPRQPAFQGLFLLYNLGSVEALHEVLQLPAALRACPPLRKALAVDAAFREGNAARLFRLLQTLPYLPSCAVQCHVGHARREALARFARAFSTPKGQTLPLGFMVNLLALDGLREARDLCQAHGLPLDGEERVVFLRGRYVEEGLPPASTCKVLVESKLRGRTLEEVVMAEEEDEGTDRPGSPA", "length": 404 }, "evidence": [ { "id": "F1RQT0", "url": "https://omabrowser.org/oma/group/F1RQT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZT97-1", "protein_name": "SAC3 domain containing 1", "gene_name": "Sac3d1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRFKGENRSQARWIMGGVSKGRRSRKSRKPGEEGWASQTGSQACSPSPRQDAVPRFRWPSDAECASSTHSPAMSDYKLPMGLCPDMCPAAERARRERERRLHRLEVEPGGCGNAPRADPRRTVKEYSRPAAGKPRPPPSLLRPPPVLLATVRYLAGEVADRTDVSCAEVASFVADRLRAVRLDLSLQGVDDAEAAAVLEPALATLLVVVARMRPEETRGVADPVLLQTQVQEGFGSLRRCYARGKAPHPRQAAFQGLFLLYNLGSVEALQEVLQLPAALRACPPLQTALAVDSAFREDNYARLFRLLRTLPYLQSCAVQEHIGYARRKALSRLSRALSTPRGQTLPLDFIVHLLALDGLQEAQDLCQAHGLTLDKDRVIFLRGQYSEEGLPSPGTCHLLVGSKLQGHTLEEVVMAEEEKDIHRPGSPT", "length": 429 }, "evidence": [ { "id": "F1RQT0", "url": "https://omabrowser.org/oma/group/F1RQT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N4T6-1", "protein_name": "SAC3 domain containing 1", "gene_name": "SAC3D1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPGYELPVGTCLDMCPAAERAQREKERRLHRFEVVPGCRRDRPRADPQRAVKEYSRPAAGKNRPPPSQLRPPSVLLATVRYLASEVAERTDASCAEVASFVADRLRAVRLDLALQTASDVETALVLESALAVLLAVVARLGPNATHGPVDPMLLQAQVQESFGSLRRCYALGAGPHPRQATFQGLFLLYNLGSVEALHEILRLPAALRSCPALRTALAVDSAFREGNAARLFRLLRTLPYLQSCAVQCHVGRARRGALARLARALSTPKGQTLPLGFMVHLLALDGPNEARDLCQAHGLPLDGQERVVFLRGRYTEEGLPPAGTCQILVGNKLGGRTLEDVAMAEEEDEAVDRPTTEV", "length": 358 }, "evidence": [ { "id": "F1RQT0", "url": "https://omabrowser.org/oma/group/F1RQT0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q67XV2-1", "protein_name": "SAC3 family protein C", "gene_name": "SAC3C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSGGGVNESFQRRSDAPHKRNNEKDESKHKDEDPADVSLIVGTCSSMCPERERVTRERLRDLAVFERLYGNPSKSSTEIAVKKFCRTLSAADVQASDVRPLPVLEETLRYLLSLLDSKEHPFEVVHDFIFDRTRSIRQDLSIQNLANERVIYLYEEMVKFHVISHERLQSCSGTSISSMHHLNMEQLAKTLTSLYNIYDANRKPDYIYENEAEFRSLYVLLHLNPSSGVMGEPLSLWFRKLTFALVKSKEICFVRNLLRLYRMGNYKNFLSRTASEATYLQYCISEHHIREMRLVAVQYINNVCYKLQPYPLLRLSQNLKMKELDVESLCHECGLETCTDPDGFTVLPVKQSTFRSPEDKFKVYDLIGIERIKMSI", "length": 406 }, "evidence": [ { "id": "F1RQT0", "url": "https://omabrowser.org/oma/group/F1RQT0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VSZ4-1", "protein_name": "SAC3/GANP/THP3 conserved domain-containing protein", "gene_name": "Dmel\\CG3437", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAQVRGSCESFCPDGEAKMRIREKLLHYFELKNGQKNKPGVLVKEFTRSAADVKMPMPKEMRTEAALTKTVEYLLKDIILDTRKPYNVAYDFIFDRLRAVRREIVIQMYDASQKICLLEPIVMFLAYSRYRLCEEPIEKFDLKICNQHLQECLTGVLCCYEELEDLESSREPTVRELERRCFIESLYQLFNLGSPESFTRALTLPDYVRRDATFKLCFGICLAFQQGNLYRVLMGVPQLPHILCAVAAAKLQVIRRSLLQIFTHAYNNKQLTVPVPYLLRLLLFDGPTGLQDQCRHYNISLTADRKAVQFNKTDFNHNAEVFTPQHERFVESKLKRIYIPEVLLLKKFN", "length": 349 }, "evidence": [ { "id": "F1RQT0", "url": "https://omabrowser.org/oma/group/F1RQT0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "centrosome duplication", "id": "GO:0051298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051298", "evidence": [ { "database": "UniProtKB", "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ], "pmid": "" }, { "name": "spindle assembly", "id": "GO:0051225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051225", "evidence": [ { "database": "UniProtKB", "id": "F1RQT0", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RQT0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 358, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RQT0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RQT0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RQT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQT0" }, { "id": "PS50250", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50250" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PCI", "eco_id": "ECO_0000259", "start_pos": 157, "end_pos": 322, "start_aa": "Gln", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S214-1", "uniprot_ac": "F1S214", "uniprot_id": "F1S214_PIG", "mass": { "chemical_mass": 32678.0, "monoisotopic_mass": 32678.0 }, "refseq": { "ac": "XP_013843535", "name": "coiled-coil domain-containing protein 190 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843535" }, "gene_names": [ { "name": "CCDC190", "type": "recommended", "evidence": [ { "id": "F1S214", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S214" } ] }, { "name": "CCDC190", "type": "synonym", "evidence": [ { "id": "XP_013843535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843535" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 190", "type": "synonym", "evidence": [ { "id": "F1S214", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S214/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 190 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013843535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843535" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S214", "url": "https://www.uniprot.org/uniprotkb/F1S214" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC190", "url": "https://www.uniprot.org/uniprotkb/F1S214", "locus": { "chromosome": "4", "start_pos": 87568370, "end_pos": 87559992, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006336", "url": "https://www.ensembl.org/id/ENSSSCG00000006336" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006336", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006336", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156626", "url": "https://www.ncbi.nlm.nih.gov/gene/100156626", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KVRNAHY", "url": "https://omabrowser.org/oma/group/KVRNAHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S214", "url": "https://www.orthodb.org/?gene=F1S214", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36871:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36871:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013843535", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843535", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FHP3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S214", "url": "https://www.uniprot.org/uniprotkb/F1S214", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S214-1", "url": "https://www.uniprot.org/uniprotkb/F1S214-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKMERHMVRGPLHKHFDLERKNAKQAEARLSQRLQRLDDICLYYVKSLTREQRQLQKELQRLQQEIIKKKFSSYFGNGSQKRPEDVRMFSSQGGQKNRVPQANKVRALTTNPTQEIYKTKPRMPPFHHAGPMGSMKRKRQPLSQNNRMSHFLEDKPQAQVKDSVNPLQGKDSNNSISLLCRDQSVSTHTLDQGPSSSPAGDSGKAHGDETTSNDANIQPDHNTEKQIPPNPMECAENFKGQPTTSTYSELFAKARNAHYLRHRVPPESERLLSIGEIFGHKESSL", "length": 286, "header": "tr|F1S214-1|F1S214_PIG Isoform 1 of Coiled-coil domain containing 190 OS=Sus scrofa OX=9823 GN=CCDC190 PE=4 SV=2 CANONICAL=F1S214-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FHP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHP3/entry", "sequence": { "sequence": "MKKMERHMVRGPLHKHFDLERKNAKQAEARLSQRLQRLDDICLYYVKSLTREQRQLQKELQRLQQAEIIKKKFSSYFGNGSQKRPEDVRMFSSQGGQKNRVPQANKVRALTTNPTQEIYKTKPRMPPFHHAGPMGSMKRKRQPLSQNNRMSHFLEDKPQAQVKDSVNPLQGKDSNNSISLLCRDQSVSTHTLDQGPSSSPAGDSGKAHGDETTSNDANIQPDHNTEKQIPPNPMECAENFKGQPTTSTYSELFAKARNAHYLRHRVPPESERLLSIGEIFGHKESSRAENGCENRVPSRLLPL", "length": 303, "header": "tr|A0A8W4FHP3-1|F1S214_PIG Computationally mapped isoform of Coiled-coil domain containing 190 OS=Sus scrofa OX=9823 GN=CCDC190 PE=4 SV=1 CANONICAL=F1S214-1" }, "locus": { "chromosome": "4", "start_pos": 87567650, "end_pos": 87561356, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095153.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095153.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078752.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078752.1" } ] } }, { "isoform_ac": "F1S214-1", "url": "https://www.uniprot.org/uniprotkb/F1S214/entry", "sequence": { "sequence": "MKKMERHMVRGPLHKHFDLERKNAKQAEARLSQRLQRLDDICLYYVKSLTREQRQLQKELQRLQQEIIKKKFSSYFGNGSQKRPEDVRMFSSQGGQKNRVPQANKVRALTTNPTQEIYKTKPRMPPFHHAGPMGSMKRKRQPLSQNNRMSHFLEDKPQAQVKDSVNPLQGKDSNNSISLLCRDQSVSTHTLDQGPSSSPAGDSGKAHGDETTSNDANIQPDHNTEKQIPPNPMECAENFKGQPTTSTYSELFAKARNAHYLRHRVPPESERLLSIGEIFGHKESSL", "length": 286, "header": "tr|F1S214-1|F1S214_PIG Isoform 1 of Coiled-coil domain containing 190 OS=Sus scrofa OX=9823 GN=CCDC190 PE=4 SV=2 CANONICAL=F1S214-1" }, "locus": { "chromosome": "4", "start_pos": 87567597, "end_pos": 87561356, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006944.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006944.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006755.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006755.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHP3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZPM4-1", "protein_name": "Coiled-coil domain containing 190", "gene_name": "Ccdc190", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERNMVRGPLYKQFDLERKGARQAEARLSLRLQRLEVICLYHVKSLAREQRQLQRELQRLQQADIVKKSFSSYVGREIQKRSEEVTTFSPQTGRRHTVLEPKIRVLKTNITQEVKNKIRVPSLHDPALKDAPRSQERLPSQNERTRRCKEGNSQARKGEAANPLKDTELSKDVSVPCHDQEVSTDKAEDSCMSSSDGERGSALADEIRSENANRKPQGDAGVQNPPSSVDYAGSVKEERTKPTFLELFEKAKKAHYLRHRVPPESERLLSIGEIFGHRDYSLPRAGGKL", "length": 289 }, "evidence": [ { "id": "F1S214", "url": "https://omabrowser.org/oma/group/F1S214/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HQK0-1", "protein_name": "Coiled-coil domain-containing protein 190 isoform X1", "gene_name": "Ccdc190", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDRRVVRGPLCKQFDLERKNARQAEARLSLRLQRLEVICLYHVKSLAREQRQLQKELQRLQQADIIKKKFSSRVESGIQKRSRDGVTFKAQTGQRHIVPEPEIRVLAANMTQEVKTKVQGPSLHDTALKDALKSPEHLQCQRDRTSCCKKENSQAREGESAKSLKGMDPNKDVSALCHGQEVSTNSTEDSPVSSPDDDSGSASADETISKNAGRKPHGDAEDQNAPSSVHCAESSKGKCTEPTFLELFAKAKNAHYLRHRVPPESERLLSVGEIFGHGGSSLPREGKKL", "length": 289 }, "evidence": [ { "id": "F1S214", "url": "https://omabrowser.org/oma/group/F1S214/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3URK1-1", "protein_name": "Coiled-coil domain-containing protein 190", "gene_name": "Ccdc190", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDRSMVKGPLYKQFDLERKSARQAEARLSLRLQRLEIICLYHVKSLAREQRQLQKELQRLQQDIIKKRFSSYVGHEIQKRSKDVVTFLPPTGQRHAVPEPKIRTLKNSVTQEVKTKIPVPSLHDPVLKDTLRSQEHLLSHGERTSCFKEGSPQGQEGEPTNPLKGVDPSKDVSVPCHDQELSTNKTEDSGVSSQDGERGSAPANETRSENASQKPRGDADVQNSPSSVDYAGSFKDERTKPSFLELFEKAKNAHYVRHRVPPESERLLSIGEIFGHKHYSLPRTGETL", "length": 288 }, "evidence": [ { "id": "F1S214", "url": "https://omabrowser.org/oma/group/F1S214/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UF4-1", "protein_name": "Coiled-coil domain-containing protein 190", "gene_name": "CCDC190", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERHMVRGQLYKHFDLERKNAKQAEARLDQRLQRLKVICLYHVKLLTWEQRQLQKELQRLQQAETMKKKFSSYLGNGFQKRPEDVLVFSPQGRQKHRAPQAKKMRALATRMAQDTCKSKSQVPPSHDAGLKDPMKSKKQPLSQNNRTACFIKEQPQAQEKDSVNPSKDVDPSKGISVPCQNQEVSTNTIEQGPSSSPASDSGMACADETRSKDVALKPDGNTGKQIPPKHMECAGSFEGEFTKPTFLELLSKARNAHYLRHRVPPESERLLSIGEIFGHGESSSSRAGKECENRVPSKFLPL", "length": 302 }, "evidence": [ { "id": "F1S214", "url": "https://omabrowser.org/oma/group/F1S214/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 174, "end_pos": 176 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RSZ9-1", "uniprot_ac": "F1RSZ9", "uniprot_id": "F1RSZ9_PIG", "mass": { "chemical_mass": 102697.0, "monoisotopic_mass": 102697.0 }, "refseq": { "ac": "XP_001925454", "name": "storkhead-box protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925454" }, "gene_names": [ { "name": "STOX2", "type": "recommended", "evidence": [ { "id": "F1RSZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ] }, { "name": "STOX2", "type": "synonym", "evidence": [ { "id": "XP_001925454", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925454" } ] } ], "protein_names": [ { "name": "Storkhead box 2", "type": "synonym", "evidence": [ { "id": "F1RSZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9/entry#names_and_taxonomy" } ] }, { "name": "storkhead-box protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001925454", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925454" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STOX2", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9", "locus": { "chromosome": "15", "start_pos": 45298762, "end_pos": 45084139, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015780", "url": "https://www.ensembl.org/id/ENSSSCG00000015780" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015780", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015780", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156897", "url": "https://www.ncbi.nlm.nih.gov/gene/100156897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019391", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019391", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156897", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156897", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KECKDSY", "url": "https://omabrowser.org/oma/group/KECKDSY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287ADK2", "url": "https://www.orthodb.org/?gene=A0A287ADK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RSZ9", "url": "https://www.orthodb.org/?gene=F1RSZ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22437", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22437", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22437:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22437:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10264", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10264", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925454", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925454", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ADK2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADK2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3E1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481AAR4", "url": "https://www.uniprot.org/uniprotkb/A0A481AAR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A481AAR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481AAR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIE9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAFAPQASRGYMTSGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGGHAATLQRKPAKDCKDPYCPPSLCQVPPTEKSKSTVNFSYKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFIMHSSANVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPEIVSGCKEPSSACSLLEPGKPPETLPSYGELNSCPAKTAADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLAEGVKKLPLSDRQAPHSSREPVGHKEESPKGPGGGPATSGTGAEGIANGRLVQHHSTEPSSLDKRKELFSKDTLFKPLHSTLSVNSYHKSSLSLLKSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESGGNQEASFDYYNVSDDDESEEGANKNTEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTWSPAHGGAGPAFSFRASTDPPTNEAEKLQKPSNCLQASVTSV", "length": 926, "header": "tr|F1RSZ9-1|F1RSZ9_PIG Isoform 1 of Storkhead box 2 OS=Sus scrofa OX=9823 GN=STOX2 PE=4 SV=3 CANONICAL=F1RSZ9-1" }, "isoforms": [ { "isoform_ac": "A0A287ADK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADK2/entry", "sequence": { "sequence": "MEPVQKGSGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGGHAATLQRKPAKDCKDPYCPPSLCQVPPTEKSKSTVNFSYKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFIMHSSANVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPEIVSGCKEPSSACSLLEPGKPPETLPSYGELNSCPAKTAADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLAEGVKKLPLSDRQAPHSSREPVGHKEESPKGPGGGPATSGTGAEGIANGRLVQHHSTEPSSLDKRKELFSKDTLFKPLHSTLSVNSYHKSSLSLLKSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESGGNQEASFDYYNVSDDDESEEGANKNTEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTWSPAHGGAGPAFSFRASTDPPTNEAEKLQKPSNCLQASVTSV", "length": 879, "header": "tr|A0A287ADK2-1|A0A287ADK2_PIG Computationally mapped isoform of Storkhead box 2 OS=Sus scrofa OX=9823 GN=STOX2 PE=4 SV=1 CANONICAL=F1RSZ9-1" }, "locus": { "chromosome": "15", "start_pos": 45294812, "end_pos": 45268011, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063747.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063747.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041912.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041912.1" } ] } }, { "isoform_ac": "A0A287B3E1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E1/entry", "sequence": { "sequence": "MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAFAPQASRGYMTSDSRTSVSVTGSFFQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGGHAATLQRKPAKDCKDPYCPPSLCQVPPTEKSKSTVNFSYKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFIMHSSANVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPEIVSGCKEPSSACSLLEPGKPPETLPSYGELNSCPAKTAADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLAEGVKKLPLSDRQAPHSSREPVGHKEESPKGPGGGPATSGTGAEGIANGRLVQHHSTEPSSLDKRKELFSKDTLFKPLHSTLSVNSYHKSSLSLLKSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESGGNQEASFDYYNVSDDDESEEGANKNTEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTWSPAHGGAGPAFSFRASTDPPTNEAEKLQKPSNCLQASVTSV", "length": 927, "header": "tr|A0A287B3E1-1|A0A287B3E1_PIG Computationally mapped isoform of Storkhead box 2 OS=Sus scrofa OX=9823 GN=STOX2 PE=4 SV=2 CANONICAL=F1RSZ9-1" }, "locus": { "chromosome": "15", "start_pos": 45294812, "end_pos": 45191101, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060553.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060553.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050983.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050983.2" } ] } }, { "isoform_ac": "A0A481AAR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A481AAR4/entry", "sequence": { "sequence": "MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAFAPQASRGYMTSGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGGHAATLQRKPAKDCKDPYCPPSLCQVPPTEKSKSTVNFSYKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFIMHSSANVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPEIVSGCKEPSSACSLLEPGKPPETLPSYGELNSCPAKTAADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLAEGVKKLPLSDRQAPHSSREPVGHKEESPKGPGGGPATSGTGAEGIANGRLVQHHSTEPSSLDKRKELFSKDTLFKPLHSTLSVNSYHKSSLSLLKSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESGGNQEASFDYYNVSDDDESEEGANKNTEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMDSSSITVDSGFNSPRN", "length": 863, "header": "tr|A0A481AAR4-1|A0A481AAR4_PIG Computationally mapped isoform of Storkhead box 2 OS=Sus scrofa OX=9823 GN=STOX2 PE=4 SV=1 CANONICAL=F1RSZ9-1" }, "locus": { "chromosome": "15", "start_pos": 45289061, "end_pos": 45191101, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085411.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085411.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059813.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059813.2" } ] } }, { "isoform_ac": "A0A8W4FIE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE9/entry", "sequence": { "sequence": "MPRKMEKFLQIAPHSLAIVLGPAEGPAGERSEAPPPAAPAQPRQLARHHIGYEIFDFKAENMQHFWNKKVTAAVAETFFLGWIDEQVLLIQGKEEHLEALREGWSRRALRPPSGFHIRYLGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPALGRAWLPTRRALLKVTVVRTLPG", "length": 195, "header": "tr|A0A8W4FIE9-1|F1RSZ9_PIG Computationally mapped isoform of Storkhead box 2 OS=Sus scrofa OX=9823 GN=STOX2 PE=4 SV=1 CANONICAL=F1RSZ9-1" }, "locus": { "chromosome": "15", "start_pos": 45294690, "end_pos": 45084139, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095368.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095368.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078663.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078663.1" } ] } }, { "isoform_ac": "F1RSZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9/entry", "sequence": { "sequence": "MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAFAPQASRGYMTSGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHGGHAATLQRKPAKDCKDPYCPPSLCQVPPTEKSKSTVNFSYKTETLSKPKDSEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFIMHSSANVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPAQTVSHQRAHISSTSYKEVCIPEIVSGCKEPSSACSLLEPGKPPETLPSYGELNSCPAKTAADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLAEGVKKLPLSDRQAPHSSREPVGHKEESPKGPGGGPATSGTGAEGIANGRLVQHHSTEPSSLDKRKELFSKDTLFKPLHSTLSVNSYHKSSLSLLKSHPKTPADTLPGRCEKLEPSLGTSAAQAMPASQRQQESGGNQEASFDYYNVSDDDESEEGANKNTEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKETDSSSNQRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTWSPAHGGAGPAFSFRASTDPPTNEAEKLQKPSNCLQASVTSV", "length": 926, "header": "tr|F1RSZ9-1|F1RSZ9_PIG Isoform 1 of Storkhead box 2 OS=Sus scrofa OX=9823 GN=STOX2 PE=4 SV=3 CANONICAL=F1RSZ9-1" }, "locus": { "chromosome": "15", "start_pos": 45294812, "end_pos": 45191101, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017181.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017181.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016720.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016720.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 110, "start_aa": "Thr", "end_pos": 110, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr110", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 132, "start_aa": "Thr", "end_pos": 132, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr132", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 147, "start_aa": "Thr", "end_pos": 147, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr147", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIE9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIE9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156897", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156897", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LYM5-1", "protein_name": "Storkhead box 2", "gene_name": "STOX2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKKTRSTTLRRAWPSSDFSDRASDRMRSRSEKDYRLHKRFPAAFAPQASRGYMTSGDVSPISMSPISQSQFIPLGEILCLAISAMNSARKPVTQEALMEHLTTCFPGVPTPSQEILRHTLNTLVRERKIYPTPDGYFIVTPQTYFITPSLIRTNSKWYHLDERIPDRSQCTSPQPGTITPSASGCVRERTLPRNHCDSCHCCREDVHAVHAATLQRKPAKDCKDPYCPPSLCQVPATEKSKSTVNFSYKTETLSKPKDGEKQSKKFGLKLFRLSFKKDKTKQLANFSAQFPPEEWPLRDEDTPTTIPREVEMEIIRRINPDLTVENVMRHTALMKKLEEEKAHRSKAGSSAHHSGRSKKSRTHRKSHGKSRSHSKTRVSKGDPSDGSHLDIPGEREYDFCDPLTRAPREGCFIIEHKGDNFIMHSNPNVIESHFPMTPEWDVSGELAKRRTEMPFPEPSRGSSHSKVHRSHSHTQDRRSRNERSNKAKERSRSMDNSKGPLGASSLGTPEDLAEGCSQDDQTPSQSYIDDSTLRPTQTIGHQRAHVSSASYKEVCIPEIVSGSKEPPSACSLLEPGKAPESLPSFGELNSCPTKTAADDYFQCNTSSETVLTAPSPLGKNKEDHDTLTLVEGVKKLPLSDRQAPHSSREPAGHKEESPKGPGGGPVAPGTVVEGLANGRLIQHHGAEPSTLDKRKEIFSKDTLFKPLHSTLSVNSYHKSTLSLLKSHPKTPADTLPGRCEKPEPSLGTSATPALPASQRQQESVGNQEASFDYYNVSDDDESEEGANKNAEEEKNRDDVGTMQWLLEREKERDLQRKFEKNLTLLAPKEADSSSNQRATHSARLDSMDSSSITVDSGFNSPRTRESLASNTSSIVESNRRQNPTWSPAHGGAGPAFSFRASTDPPTNEAEKLQKPSNCLQASVTSV", "length": 926 }, "evidence": [ { "id": "F1RSZ9", "url": "https://omabrowser.org/oma/group/F1RSZ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "pmid": "" }, { "name": "embryo development ending in birth or egg hatching", "id": "GO:0009792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009792", "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "pmid": "" }, { "name": "maternal placenta development", "id": "GO:0001893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001893", "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1RSZ9", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" }, { "start_pos": 775, "end_pos": 777, "annotation": "n_glycosylation_sequon" }, { "start_pos": 821, "end_pos": 823, "annotation": "n_glycosylation_sequon" }, { "start_pos": 870, "end_pos": 872, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSZ9" }, { "id": "PF10264", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10264" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Winged helix Storkhead-box1", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 141, "start_aa": "Met", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 110, 132, 147 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 245, "end_pos": 247 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 604, "end_pos": 606 }, { "start_pos": 775, "end_pos": 777 }, { "start_pos": 821, "end_pos": 823 }, { "start_pos": 870, "end_pos": 872 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S2T2-1", "uniprot_ac": "F1S2T2", "uniprot_id": "F1S2T2_PIG", "mass": { "chemical_mass": 242075.0, "monoisotopic_mass": 242075.0 }, "refseq": { "ac": "XP_001924746", "name": "YLP motif-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924746" }, "gene_names": [ { "name": "YLPM1", "type": "recommended", "evidence": [ { "id": "F1S2T2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2T2" } ] }, { "name": "YLPM1", "type": "synonym", "evidence": [ { "id": "XP_001924746", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924746" } ] } ], "protein_names": [ { "name": "YLP motif-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1S2T2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2T2/entry#names_and_taxonomy" } ] }, { "name": "Nuclear protein ZAP3", "type": "synonym", "evidence": [ { "id": "F1S2T2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S2T2/entry#names_and_taxonomy" } ] }, { "name": "YLP motif-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_001924746", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924746" } ] } ], "function": [ { "annotation": "Plays a role in the reduction of telomerase activity during differentiation of embryonic stem cells by binding to the core promoter of TERT and controlling its down-regulation.", "evidence": [ { "database": "UniProtKB", "id": "I3L5N2", "url": "https://www.uniprot.org/uniprotkb/I3L5N2#function" }, { "database": "UniProtKB", "id": "ARBA00058677", "url": "https://www.uniprot.org/uniprotkb/ARBA00058677#function" }, { "database": "UniProtKB", "id": "A0A287A1S0", "url": "https://www.uniprot.org/uniprotkb/A0A287A1S0#function" }, { "database": "UniProtKB", "id": "A0A287AXH5", "url": "https://www.uniprot.org/uniprotkb/A0A287AXH5#function" }, { "database": "UniProtKB", "id": "A0A8W4FLU9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU9#function" }, { "database": "UniProtKB", "id": "F1S2T2", "url": "https://www.uniprot.org/uniprotkb/F1S2T2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S2T2", "url": "https://www.uniprot.org/uniprotkb/F1S2T2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "YLPM1", "url": "https://www.uniprot.org/uniprotkb/F1S2T2", "locus": { "chromosome": "7", "start_pos": 98042230, "end_pos": 97976144, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002372", "url": "https://www.ensembl.org/id/ENSSSCG00000002372" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002372", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002372", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152380", "url": "https://www.ncbi.nlm.nih.gov/gene/100152380", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152380", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152380", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S2T2", "url": "https://www.orthodb.org/?gene=F1S2T2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13413", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13413", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13413:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13413:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13671", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13671", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001924746", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924746", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A1S0", "url": "https://www.uniprot.org/uniprotkb/A0A287A1S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1S0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXH5", "url": "https://www.uniprot.org/uniprotkb/A0A287AXH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLU9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2T2", "url": "https://www.uniprot.org/uniprotkb/F1S2T2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S2T2-1", "url": "https://www.uniprot.org/uniprotkb/F1S2T2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5N2", "url": "https://www.uniprot.org/uniprotkb/I3L5N2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5N2-1", "url": "https://www.uniprot.org/uniprotkb/I3L5N2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYPNWGRYGGSSHYPPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELDSPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPASSQPYLPPAQPSPSQSPTSQSYLAPTPSYSSSSSSSQSYLSHSQSYMPPSQASPSRPSQGHSKSQLLAPPPPSASSGNKTTVQQEPLESGAKNKSAEQQQTAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVSKDAPEPVKEEGTVAATSQVPEPPPSEEPPLPPPNEDVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGFQYQGIMQKHTQLQQILQQYQQIIQHPPHIQTMSVDMQMRHYEMQQQQFQHLYQEWEREFQLWEEQLHSYPHKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPASVPPPGMPPPVMPPSLPTSVPPPVMPPSLSSTGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVLPLPPLSSATPPPGIPPPGVPQGIPPQLTTAPVPPASSSQNSQVPEKPRPALLPTPVSFGSGPPSAYHPPLQSAIGPSEQVNSKALSKSTLPYSSFSSEQGLGESSAAPSQPITAIKDMPGRSGGGLLPDPPRSSYLEGPRGPRFDGPRRFEDLGSRCEGPRPKGPRFEGNRPDGPRPRYEGHSTEGTKSKWGMIPRGPASQFYITPNTSLSPRQSGPQWKGPKPAFGQQHQQQPKSQAEPGNKEPLADTSSNQQKNFKMQSAAFSIAADVKDAKAAQSNENLSDSQQEPPKSEVSEGPIEPSDWDQNSQSMETQMDKAQGVTQPVPLANKPVPSQSAFPSKTGGMEGGAAVATSSSLNADNDFKPLGIGLSHLENNQDKGLPRPDNRDNRLEGSRGSSSSYRGPGQSRMEDTRDKGLVNRGRGQAISRGPGLVKQEDFRDKMMGRREDSREKMSRGEGSRERGLVRPGSSREKVPGGLQSNQDRGRAGSRERGPPRRAGSQERGPPRRPGSRERVPPRRAGSRERGSPRGPGSRERGMGRPDFGRDRGPFRPEPGDGGEKIYPYHRDEPPRAPWNHGEERGHEEFPLDGRNAPMERERLDDWDRERYWRECERDYQDDTLDPYNREDRFSAPPSRSHDEDRRGPWWDDWERDQDMDEDYNREMDRDLDRDVDRIGRPMDMYDRNLDNEWDRDYGRPLDEQESQFRERDIPSLPPLPPLPPLPPLDRYRDDRWREERNRDHGYDRDFRDRGELRIREYPERGDTWREKRDYIPDRMDWERERLSDRWYPSDVDRHSPMAEHVPSSHHSSEMMGSDANLDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDYGSEPQMPDHLPPQDSRLHNTSSRPGLYPPPGSYRPPPPMGKPPGSIVRPSVPPARASVPVTRPPIPIPPPPPPPPPPPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHPSIPPPPGPMPMGMPPMSKPPPVQQTVDYGHGRDISTNKVEQIPYGERITLRPEPLPERSTFETEHAGQRDRYDRDRDREPYFDRQSNVMTDHRDFKRDRETHRDRDRDRGVIDYDRDRFDRERRPRDDRTQSYRDKKEHSSSRRGGFDRPSYDRKSDRPAYEGPSMFGGERRTYPEERMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKDEKKDAEEEESELGYIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEPGKKRVRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLAEKALNRTKYI", "length": 2149, "header": "tr|F1S2T2-1|F1S2T2_PIG Isoform 1 of YLP motif-containing protein 1 OS=Sus scrofa OX=9823 GN=YLPM1 PE=1 SV=3 CANONICAL=F1S2T2-1" }, "isoforms": [ { "isoform_ac": "A0A287A1S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1S0/entry", "sequence": { "sequence": "MYPNWGRYGGSSHYPPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELDSPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPASSQPYLPPAQPSPSQSPTSQSYLAPTPSYSSSSSSSQSYLSHSQSYMPPSQASPSRPSQGHSKSQLLAPPPPSASSGNKTTVQQEPLESGAKNKSAEQQQTAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVSKDAPEPVKEEGTVAATSQVPEPPPSEEPPLPPPNEDVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGFQYQGIMQKHTQLQQILQQYQQIIQHPPHIQTMSVDMQMRHYEMQQQQFQHLYQEWEREFQLWEEQLHSYPHKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPASVPPPGMPPPVMPPSLPTSVPPPVMPPSLSSTGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVLPLPPLSSATPPPGIPPPGVPQGIPPQLTTAPVPPASSSQNSQVPEKPRPALLPTPVSFGSGPPSAYHPPLQSAIGPSEQVNSKALSKSTLPYSSFSSEQGLGESSAAPSQPITAIKDMPGRSGGGLLPDPPRSSYLEGPRGPRFDGPRRFEDLGSRCEGPRPKGPRFEGNRPDGPRPRYEGHSTEGTKSKWGMIPRGPASQFYITPNTSLSPRQSGPQWKGPKPAFGQQHQQQPKSQAEPGNKEPLADTSSNQQKNFKMQSAAFSIAADVKDAKAAQSNENLSDSQQEPPKSEVSEGPIEPSDWDQNSQSMETQMDKAQGVTQPVPLANKPVPSQSAFPSKTGGMEGGAAVATSSSLNADNDFKPLGIGLSHLENNQDKGLPRPDNRDNRLEGSRGSSSSYRGPGQSRMEDTRDKGLVNRGRGQAISRGPGLVKQEDFRDKMMGRREDSREKMSRGEGSRERGLVRPGSSREKVPGGLQSNQDRGRAGSRERGPPRRAGSQERGPPRRPGSRERVPPRRAGSRERGSPRGPGSRERGMGRPDFGRDRGPFRPEPGDGGEKIYPYHRDEPPRAPWNHGEERGHEEFPLDGRNAPMERERLDDWDRERYWRECERDYQDDTLDPYNREDRFSAPPSRSHDEDRRGPWWDDWERDQDMDEDYNREMDRDLDRDVDRIGRPMDMYDRNLDNEWDRDYGRPLDEQESQFRERDIPSLPPLPPLPPLPPLDRYRDDRWREERNRDHGYDRDFRDRGELRIREYPERGDTWREKRDYIPDRMDWERERLSDRWYPSDVDRHSPMAEHVPSSHHSSEMMGSDANLDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDYGSEPQMPDHLPPQDSRLHNTSSRPGLYPPPGSYRPPPPMGKPPGSIVRPSVPPARASVPVTRPPIPIPPPPPPPPPPPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHPSIPPPPGPMPMGMPPMSKPPPVQQTVDYGHGRDISTNKVEQIPYGERITLRPEPLPERSTFETEHAGQRDRYDRDRDREPYFDRQSNVMTDHRDFKRDRETHRDRDRDRGVIDYDRDRFDRERRPRDDRTQSYRDKKEHSSSRRGGFDRPSYDRKSDRPAYEGPSMFGGERRTYPEERMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKDEKKDAEEEESELVGDRTTTLNKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEPGKKRVRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLAEKALNRTKYI", "length": 2140, "header": "tr|A0A287A1S0-1|A0A287A1S0_PIG Computationally mapped isoform of YLP motif-containing protein 1 OS=Sus scrofa OX=9823 GN=YLPM1 PE=1 SV=2 CANONICAL=F1S2T2-1" }, "locus": { "chromosome": "7", "start_pos": 98041456, "end_pos": 97976313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043168.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043168.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037702.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037702.2" } ] } }, { "isoform_ac": "A0A287AXH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXH5/entry", "sequence": { "sequence": "MYPNWGRYGGSSHYPPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELDSPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPASSQPYLPPAQPSPSQSPTSQSYLAPTPSYSSSSSSSQSYLSHSQSYMPPSQASPSRPSQGHSKSQLLAPPPPSASSGNKTTVQQEPLESGAKNKSAEQQQTAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVSKDAPEPVKEEGTVAATSQVPEPPPSEEPPLPPPNEDVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGFQYQGIMQKHTQLQQILQQYQQIIQHPPHIQTMSVDMQMRHYEMQQQQFQHLYQEWEREFQLWEEQLHSYPHKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPASVPPPGMPPPVMPPSLPTSVPPPVMPPSLSSTGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVLPLPPLSSATPPPGIPPPGVPQGIPPQLTTAPVPPASSSQNSQVPEKPRPALLPTPVSFGSGPPSAYHPPLQSAIGPSEQVNSKALSKSTLPYSSFSSEQGLGESSAAPSQPITAIKDMPGRSGGGLLPDPPRSSYLEGPRGPRFDGPRRFEDLGSRCEGPRPKGPRFEGNRPDGPRPRYEGHSTEGTKSKWGMIPRGPASQFYITPNTSLSPRQSGPQWKGPKPAFGQQHQQQPKSQAEPGNKEPLADTSSNQQKNFKMQSAAFSIAADVKDAKAAQSNENLSDSQQEPPKSEVSEGPIEPSDWDQNSQSMETQMDKAQGVTQPVPLANKPVPSQSAFPSKTGGMEGGAAVATSSSLNADNDFKPLGIGLSHLENNQDKGLPRPDNRDNRLEGSRGSSSSYRGPGQSRMEDTRDKGLVNRGRGQAISRGPGLVKQEDFRDKMMGRREDSREKMSRGEGSRERGLVRPGSSREKVPGGLQSNQDRGRAGSRERGPPRRAGSQERGPPRRPGSRERVPPRRAGSRERGSPRGPGSRERGMGRPDFGRDRGPFRPEPGDGGEKIYPYHRDEPPRAPWNHGEERGHEEFPLDGRNAPMERERLDDWDRERYWRECERDYQDDTLDPYNREDRFSAPPSRSHDEDRRGPWWDDWERDQDMDEDYNREMDRDLDRDVDRIGRPMDMYDRNLDNEWDRDYGRPLDEQESQFRERDIPSLPPLPPLPPLPPLDRYRDDRWREERNRDHGYDRDFRDRGELRIREYPERGDTWREKRDYIPDRMDWERERLSDRWYPSDVDRHSPMAEHVPSSHHSSEMMGSDANLDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDYGSEPQMPDHLPPQDSRLHNTSSRPGLYPPPGSYRPPPPMGKPPGSIVRPSVPPARASVPVTRPPIPIPPPPPPPPPPPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHPSIPPPPGPMPMGMPPMSKPPPVQQTVDYGHGREHAGQRDRYDRDRDREPYFDRQSNVMTDHRDFKRDRETHRDRDRDRGVIDYDRDRFDRERRPRDDRTQSYRDKKEHSSSRRGGFDRPSYDRKSDRPAYEGPSMFGGERRTYPEERMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKDEKKDAEEEESELGYIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEPGKKRVRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLAEKALNRTKYI", "length": 2118, "header": "tr|A0A287AXH5-1|A0A287AXH5_PIG Computationally mapped isoform of YLP motif-containing protein 1 OS=Sus scrofa OX=9823 GN=YLPM1 PE=1 SV=1 CANONICAL=F1S2T2-1" }, "locus": { "chromosome": "7", "start_pos": 98041456, "end_pos": 97976313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065687.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065687.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048843.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048843.1" } ] } }, { "isoform_ac": "A0A8W4FLU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU9/entry", "sequence": { "sequence": "MYPNWGRYGGSSHYPPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELDSPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPASSQPYLPPAQPSPSQSPTSQSYLAPTPSYSSSSSSSQSYLSHSQSYMPPSQASPSRPSQGHSKSQLLAPPPPSASSGNKTTVQQEPLESGAKNKSAEQQQTAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVSKDAPEPVKEEGTVAATSQVPEPPPSEEPPLPPPNEDVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGFQYQGIMQKHTQLQQILQQYQQIIQHPPHIQTMSVDMQMRHYEMQQQQFQHLYQEWEREFQLWEEQLHSYPHKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPASVPPPGMPPPVMPPSLPTSVPPPVMPPSLSSTGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVLPLPPLSSATPPPGIPPPGVPQGIPPQLTTAPVPPASSSQNSQVPEKPRPALLPTPVSFGSGPPSAYHPPLQSAIGPSEQVNSKALSKSTLPYSSFSSEQGLGESSAAPSQPITAIKDMPGRSGGGLLPDPPRSSYLEGPRGPRFDGPRRFEDLGSRCEGPRPKGPRFEGNRPDGPRPRYEGHSTEGTKSKWGMIPRGPASQFYITPNTSLSPRQSGPQWKGPKPAFGQQHQQQPKSQAEPGNKEPLADTSSNQQKNFKMQSAAFSIAADVKDAKAAQSNENLSDSQQEPPKSEVSEGPIEPSDWDQNSQSMETQMDKAQGVTQPVPLANKPVPSQSAFPSKTGGMEGGAAVATSSSLNADNDFKPLGIGLSHLENNQDKGLPRPDNRDNRLEGSRGSSSSYRGPGQSRMEDTRDKGLVNRGRGQAISRGPGLVKQEDFRDKMMGRREDSREKMSRGEGSRERGLVRPGSSREKVPGGLQSNQDRGRAGSRERGPPRRAGSQERGPPRRPGSRERVPPRRAGSRERGSPRGPGSRERGMGRPDFGRDRGPFRPEPGDGGEKIYPYHRDEPPRAPWNHGEERGHEEFPLDGRNAPMERERLDDWDRERYWRECERDYQDDTLDPYNREDRFSAPPSRSHDEDRRGPWWDDWERDQDMDEDYNREMDRDLDRDVDRIGRPMDMYDRNLDNEWDRDYGRPLDEQESQFRERDIPSLPPLPPLPPLPPLDRYRDDRWREERNRDHGYDRDFRDRGELRIREYPERGDTWREKRDYIPDRMDWERERLSDRWYPSDVDRHSPMAEHVPSSHHSSEMMGSDANLDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDYGSEPQMPDHLPPQDSRLHNTSSRPGLYPPPGSYRPPPPMGKPPGSIVRPSVPPARASVPVTRPPIPIPPPPPPPPPPPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHPSIPPPPGPMPMGMPPMSKPPPVQQTVDYGHGRDISTNKVEQIPYGERITLRPEPLPERSTFETEHAGQRDRYDRDRDREPYFDRQSNVMTDHRDFKRDRETHRDRDRDRGVIDYDRDRFDRERRPRDDRTQSYRDKKEHSSSRRGGFDRPSYDRKSDRPAYEGPSMFGGERRTYPEERMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKDEKKDAEEEESELVGDRTTTLNKVSLY", "length": 2054, "header": "tr|A0A8W4FLU9-1|F1S2T2_PIG Computationally mapped isoform of YLP motif-containing protein 1 OS=Sus scrofa OX=9823 GN=YLPM1 PE=1 SV=1 CANONICAL=F1S2T2-1" }, "locus": { "chromosome": "7", "start_pos": 98026321, "end_pos": 97976313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098940.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098940.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079873.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079873.1" } ] } }, { "isoform_ac": "F1S2T2-1", "url": "https://www.uniprot.org/uniprotkb/F1S2T2/entry", "sequence": { "sequence": "MYPNWGRYGGSSHYPPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELDSPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPASSQPYLPPAQPSPSQSPTSQSYLAPTPSYSSSSSSSQSYLSHSQSYMPPSQASPSRPSQGHSKSQLLAPPPPSASSGNKTTVQQEPLESGAKNKSAEQQQTAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVSKDAPEPVKEEGTVAATSQVPEPPPSEEPPLPPPNEDVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGFQYQGIMQKHTQLQQILQQYQQIIQHPPHIQTMSVDMQMRHYEMQQQQFQHLYQEWEREFQLWEEQLHSYPHKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPASVPPPGMPPPVMPPSLPTSVPPPVMPPSLSSTGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVLPLPPLSSATPPPGIPPPGVPQGIPPQLTTAPVPPASSSQNSQVPEKPRPALLPTPVSFGSGPPSAYHPPLQSAIGPSEQVNSKALSKSTLPYSSFSSEQGLGESSAAPSQPITAIKDMPGRSGGGLLPDPPRSSYLEGPRGPRFDGPRRFEDLGSRCEGPRPKGPRFEGNRPDGPRPRYEGHSTEGTKSKWGMIPRGPASQFYITPNTSLSPRQSGPQWKGPKPAFGQQHQQQPKSQAEPGNKEPLADTSSNQQKNFKMQSAAFSIAADVKDAKAAQSNENLSDSQQEPPKSEVSEGPIEPSDWDQNSQSMETQMDKAQGVTQPVPLANKPVPSQSAFPSKTGGMEGGAAVATSSSLNADNDFKPLGIGLSHLENNQDKGLPRPDNRDNRLEGSRGSSSSYRGPGQSRMEDTRDKGLVNRGRGQAISRGPGLVKQEDFRDKMMGRREDSREKMSRGEGSRERGLVRPGSSREKVPGGLQSNQDRGRAGSRERGPPRRAGSQERGPPRRPGSRERVPPRRAGSRERGSPRGPGSRERGMGRPDFGRDRGPFRPEPGDGGEKIYPYHRDEPPRAPWNHGEERGHEEFPLDGRNAPMERERLDDWDRERYWRECERDYQDDTLDPYNREDRFSAPPSRSHDEDRRGPWWDDWERDQDMDEDYNREMDRDLDRDVDRIGRPMDMYDRNLDNEWDRDYGRPLDEQESQFRERDIPSLPPLPPLPPLPPLDRYRDDRWREERNRDHGYDRDFRDRGELRIREYPERGDTWREKRDYIPDRMDWERERLSDRWYPSDVDRHSPMAEHVPSSHHSSEMMGSDANLDSDQGLGGVMVLSQRQHEIILKAAQELKMLREQKEQLQKMKDYGSEPQMPDHLPPQDSRLHNTSSRPGLYPPPGSYRPPPPMGKPPGSIVRPSVPPARASVPVTRPPIPIPPPPPPPPPPPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHPSIPPPPGPMPMGMPPMSKPPPVQQTVDYGHGRDISTNKVEQIPYGERITLRPEPLPERSTFETEHAGQRDRYDRDRDREPYFDRQSNVMTDHRDFKRDRETHRDRDRDRGVIDYDRDRFDRERRPRDDRTQSYRDKKEHSSSRRGGFDRPSYDRKSDRPAYEGPSMFGGERRTYPEERMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKDEKKDAEEEESELGYIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEPGKKRVRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLAEKALNRTKYI", "length": 2149, "header": "tr|F1S2T2-1|F1S2T2_PIG Isoform 1 of YLP motif-containing protein 1 OS=Sus scrofa OX=9823 GN=YLPM1 PE=1 SV=3 CANONICAL=F1S2T2-1" }, "locus": { "chromosome": "7", "start_pos": 98041456, "end_pos": 97976313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002636.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002636.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002569.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002569.3" } ] } }, { "isoform_ac": "I3L5N2-1", "url": "https://www.uniprot.org/uniprotkb/I3L5N2/entry", "sequence": { "sequence": "MYPNWGRYGGSSHYPPPPPVPPPPPVALPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELDSPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPASSQPYLPPAQPSPSQSPTSQSYLAPTPSYSSSSSSSQSYLSHSQSYMPPSQASPSRPSQGHSKSQLLAPPPPSASSGNKTTVQQEPLESGAKNKSAEQQQTAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVSKDAPEPVKEEGTVAATSQVPEPPPSEEPPLPPPNEDVPPPLPPEEPQSEDPEEDARLKQLQAAAAHWQQHQQHRVGFQYQGIMQKHTQLQQILQQYQQIIQHPPHIQTMSVDMQMRHYEMQQQQFQHLYQEWEREFQLWEEQLHSYPHKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPASVPPPGMPPPVMPPSLPTSVPPPVMPPSLSSTGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVLPLPPLSSATPPPGIPPPGVPQGIPPQLTTAPVPPASSSQNSQVPEKPRPALLPTPVSFGSGPPSAYHPPLQSAIGPSEQVNSKALSKSTLPYSSFSSEQGLGESSAAPSQPITAIKDMPGRSGGGLLPDPPRSSYLEGPRGPREQKEQLQKMKDYGSEPQMPDHLPPQDSRLHNTSSRPGLYPPPGSYRPPPPMGKPPGSIVRPSVPPARASVPVTRPPIPIPPPPPPPPPPPPPPPVIKPQTSAVEQERWDEDSFYGLWDTNDEQGLNSEFKSETAAIPSAPVLPPPPVHPSIPPPPGPMPMGMPPMSKPPPVQQTVDYGHGRDISTNKVEQIPYGERITLRPEPLPERSTFETEHAGQRDRYDRDRDREPYFDRQSNVMTDHRDFKRDRETHRDRDRDRGVIDYDRDRFDRERRPRDDRTQSYRDKKEHSSSRRGGFDRPSYDRKSDRPAYEGPSMFGGERRTYPEERMPLPAPSLSHQPPPAPRVEKKPESKNVDDILKPPGRESRPERIVVIMRGLPGSGKTHVAKLIRDKEVEFGGPAPRVLSLDDYFITEVEKEEKDPDSGKKVKKKVMEYEYEAEMEETYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSADNQTCGKRNIHGRKLKEINKMADHWEAAPRHMMRLDIRSLLQDAAIEEVEMEDFDANIEEQKDEKKDAEEEESELGYIPKSKWEMDTSEAKLDKLDGLRTGTKRKRDWEAIASRMEDYLQLPDDYDTRASEPGKKRVRWADLEEKKDADRKRAIGFVVGQTDWEKITDESGHLAEKALNRTKYI", "length": 1444, "header": "tr|I3L5N2-1|F1S2T2_PIG Computationally mapped isoform of YLP motif-containing protein 1 OS=Sus scrofa OX=9823 GN=YLPM1 PE=1 SV=2 CANONICAL=F1S2T2-1" }, "locus": { "chromosome": "7", "start_pos": 98041456, "end_pos": 97976313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027433.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027433.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019331.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019331.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 205, "start_aa": "Thr", "end_pos": 205, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr205", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5N2", "url": "https://www.uniprot.org/uniprotkb/I3L5N2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152380", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152380", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S2T2", "url": "https://www.uniprot.org/uniprotkb/F1S2T2" } ], "pmid": "" }, { "name": "regulation of telomere maintenance", "id": "GO:0032204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032204", "evidence": [ { "database": "UniProtKB", "id": "F1S2T2", "url": "https://www.uniprot.org/uniprotkb/F1S2T2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear 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809, "header": "tr|A0A8W4FMU3-1|F1RS61_PIG Computationally mapped isoform of EF-hand domain family member B OS=Sus scrofa OX=9823 GN=EFHB PE=1 SV=2 CANONICAL=F1RS61-1" }, "locus": { "chromosome": "13", "start_pos": 6898565, "end_pos": 6826738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106278.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106278.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080673.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080673.1" } ] } }, { "isoform_ac": "F1RS61-1", "url": "https://www.uniprot.org/uniprotkb/F1RS61/entry", "sequence": { "sequence": 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GN=EFHB PE=1 SV=4 CANONICAL=F1RS61-1" }, "locus": { "chromosome": "13", "start_pos": 6898712, "end_pos": 6826738, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012271.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012271.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011954.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011954.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory 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mechanism or regulation of T-cell cytolytic activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4H5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H5#function" }, { "database": "UniProtKB", "id": "ARBA00054179", "url": "https://www.uniprot.org/uniprotkb/ARBA00054179#function" }, { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CTSW", "url": "https://www.uniprot.org/uniprotkb/F1RU23", "locus": { "chromosome": "2", "start_pos": 6446105, "end_pos": 6450360, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012970", "url": "https://www.ensembl.org/id/ENSSSCG00000012970" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012970", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012970", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02248", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02248", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525853", "url": "https://www.ncbi.nlm.nih.gov/gene/100525853", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000668", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000668", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525853", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525853", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EALWGIR", "url": "https://omabrowser.org/oma/group/EALWGIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RU23", "url": "https://www.orthodb.org/?gene=F1RU23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00112", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00112", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003122571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122571", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4H5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU23-1", "url": "https://www.uniprot.org/uniprotkb/F1RU23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALTAHLSCLLVLVVAGPAQGLKDALRSQDPGPQPMGLKEVFTLFQIQYNRSYSNPAEHARRLDIFAQNLAKAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLHGHHWGAGKAPSMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQAVQLSVQQVLDCDRCGNGCNGGFVWDAFLTVLNTSGLASEQDYPYKGTVKTHRCLAKQHRKVAWIQDFLMLQFCEQSIARYLATEGPITVTINAGLLQQYKRGVIRATPATCDPHLVNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGPDWGEEGYFRLHRGSNTCGITKYPVTARVDKPVKKHQISCPP", "length": 367, "header": "tr|F1RU23-1|F1RU23_PIG Isoform 1 of Cathepsin W OS=Sus scrofa OX=9823 GN=CTSW PE=3 SV=1 CANONICAL=F1RU23-1" }, "isoforms": [ { "isoform_ac": "A0A287A4H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4H5/entry", "sequence": { "sequence": "MALTAHLSCLLVLVVAGPAQGLKDALRSQDPGPQPMGLKEVFTLFQIQYNRSYSNPAEEEFGQLHGHHWGAGKAPSMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQAVQLSVQQVLDCDRCGNGCNGGFVWDAFLTVLNTSGLASEQDYPYKGTVKTHRCLAKQHRKVAWIQDFLMLQFCEQSIARYLATEGPITVTINAGLLQQYKRGVIRATPATCDPHLVNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGPDWGEEGYFRLHRGSNTCGITKYPVTARVDKPVKKHQISCPP", "length": 329, "header": "tr|A0A287A4H5-1|A0A287A4H5_PIG Computationally mapped isoform of Cathepsin W OS=Sus scrofa OX=9823 GN=CTSW PE=3 SV=2 CANONICAL=F1RU23-1" }, "locus": { "chromosome": "2", "start_pos": 6450150, "end_pos": 6446237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060947.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060947.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038678.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038678.3" } ] } }, { "isoform_ac": "A0A8W4FNM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNM5/entry", "sequence": { "sequence": "MALTAHLSCLLVLVVAGPAQGLKDALRSQDPGPQPMGLKEVFTLFQIQYNRSYSNPAEHARRLDIFAQNLAKAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLHGHHWGAGKAPSMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQAVQLSVQRGLASEQDYPYKGTVKTHRCLAKQHRKVAWIQDFLMLQFCEQSIARYLATEGPITVTINAGLLQQYKRGVIRATPATCDPHLVNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGPDWGEEGYFRLHRGSNTCGITKYPVTARVDKPVKKHQISCPP", "length": 340, "header": "tr|A0A8W4FNM5-1|F1RU23_PIG Computationally mapped isoform of Cathepsin W OS=Sus scrofa OX=9823 GN=CTSW PE=3 SV=1 CANONICAL=F1RU23-1" }, "locus": { "chromosome": "2", "start_pos": 6450150, "end_pos": 6446237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101678.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101678.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080792.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080792.1" } ] } }, { "isoform_ac": "F1RU23-1", "url": "https://www.uniprot.org/uniprotkb/F1RU23/entry", "sequence": { "sequence": "MALTAHLSCLLVLVVAGPAQGLKDALRSQDPGPQPMGLKEVFTLFQIQYNRSYSNPAEHARRLDIFAQNLAKAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLHGHHWGAGKAPSMGIKVGSEESGETVPQSCDWRKKPGVISAIKHQKDCNCCWAMAAVDNVEAQWAIKYHQAVQLSVQQVLDCDRCGNGCNGGFVWDAFLTVLNTSGLASEQDYPYKGTVKTHRCLAKQHRKVAWIQDFLMLQFCEQSIARYLATEGPITVTINAGLLQQYKRGVIRATPATCDPHLVNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWGPDWGEEGYFRLHRGSNTCGITKYPVTARVDKPVKKHQISCPP", "length": 367, "header": "tr|F1RU23-1|F1RU23_PIG Isoform 1 of Cathepsin W OS=Sus scrofa OX=9823 GN=CTSW PE=3 SV=1 CANONICAL=F1RU23-1" }, "locus": { "chromosome": "2", "start_pos": 6450150, "end_pos": 6446237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014177.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014177.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013791.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013791.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNM5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525853", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525853", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MHV4-1", "protein_name": "Cathepsin W", "gene_name": "CTSW", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPTVHLSCLLALLVAGLAQGIKDSLRGQDPGPQPLELKEVFRLFQMQYNRSYPNPAEYARRLDIFAQNLAKAQRLQEEDLGTAEFGVTQFSDLTEEEFVQLYGSQVAGEALGVSRKVGSEEWGESEPQTCDWRKVGTISPVRDQRNCNCCWAMAAAGNIEALWAIKFRHFVEVSVQQLLDCDRCGNGCRGGFVWDAFLTVLNNSGLASEKDYPFNGSGKTHRCLAKKYKKVAWIQDFIILQACEQSMARHLATEGPITVTINMTLLQQYQKGVIKATPTTCDPTQVDHSVLLVGFGKTKLVEGRQGKAASFGSYARPRRSMAYWILKNSWGPQWGEEGYFRLHRGSNTCGITKFPVTARVDKPKKQHQVSCPP", "length": 374 }, "evidence": [ { "id": "F1RU23", "url": "https://omabrowser.org/oma/group/F1RU23/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3I2G4-1", "protein_name": "Cathepsin W", "gene_name": "Ctsw", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MMLTAHLSYFLALLTASQGLNDSFLTKDTGPRPLELIEVFKLFQIKYNRSYANPAEYARRLNIFAHNLAQAQRLQEEDLGTAEFGETPFSDLTEEEFGQLYGQQKAPKRIPNMVKKAGSEKWGQPVPSTCDWRKATNIISSIKNQKTCRCCWAIAAADNIEALWRIKTQHFVEVSVQELLDCERCGNGCDGGFVWDAYMTVLNNSGLASEKDYPFKGYPNPHGCLANRYKKVAWIQDFTMLGRDEQVIAGYLATHGPITVTINMKLLQGYQKGVIKATPTTCDPQQVDHSVLLVGFGKGKEKEDIQSGTILSQTRKPRKPRRSVPYWILKNSWGAEWGEKGYFRLYRGNNSCGITKYPITACLDHPVKKPPIPCPP", "length": 376 }, "evidence": [ { "id": "F1RU23", "url": "https://omabrowser.org/oma/group/F1RU23/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P56202-1", "protein_name": "Cathepsin W", "gene_name": "CTSW", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALTAHPSCLLALLVAGLAQGIRGPLRAQDLGPQPLELKEAFKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLYGYRRAAGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRCGDGCHGGFVWDAFITVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGITKFPLTARVQKPDMKPRVSCPP", "length": 376 }, "evidence": [ { "id": "F1RU23", "url": "https://omabrowser.org/oma/group/F1RU23/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P56203-1", "protein_name": "Cathepsin W", "gene_name": "Ctsw", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTLTAHLSYFLVLLLAGQGLSDSLLTKDAGPRPLELKEVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGNGCNGGFVWDAYLTVLNNSGLASEKDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKEKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGVTKYPFTAQVDSPVKKARTSCPP", "length": 371 }, "evidence": [ { "id": "F1RU23", "url": "https://omabrowser.org/oma/group/F1RU23/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "intracellular organelle lumen", "id": "GO:0070013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070013", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cysteine-type peptidase activity", "id": "GO:0008234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008234", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" }, { "name": "cysteine-type endopeptidase activity", "id": "GO:0004197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004197", "evidence": [ { "database": "UniProtKB", "id": "F1RU23", "url": "https://www.uniprot.org/uniprotkb/F1RU23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RU23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU23" }, { "id": "SM00848", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00848" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cathepsin propeptide inhibitor", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 99, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RU23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU23" }, { "id": "SM00645", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00645" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase C1A papain C-terminal", "eco_id": "ECO_0000259", "start_pos": 128, "end_pos": 353, "start_aa": "Val", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXC5-1", "uniprot_ac": "F1RXC5", "uniprot_id": "F1RXC5_PIG", "mass": { "chemical_mass": 46341.0, "monoisotopic_mass": 46341.0 }, "refseq": { "ac": "XP_005653963", "name": "WAS/WASL-interacting protein family member 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653963" }, "gene_names": [ { "name": "WIPF2", "type": "recommended", "evidence": [ { "id": "F1RXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXC5" } ] }, { "name": "WIPF2", "type": "synonym", "evidence": [ { "id": "XP_005653963", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653963" } ] } ], "protein_names": [ { "name": "WAS/WASL interacting protein family member 2", "type": "synonym", "evidence": [ { "id": "F1RXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXC5/entry#names_and_taxonomy" } ] }, { "name": "WAS/WASL-interacting protein family member 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005653963", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653963" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXC5", "url": "https://www.uniprot.org/uniprotkb/F1RXC5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WIPF2", "url": "https://www.uniprot.org/uniprotkb/F1RXC5", "locus": { "chromosome": "12", "start_pos": 22119979, "end_pos": 22164626, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017479", "url": "https://www.ensembl.org/id/ENSSSCG00000017479" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017479", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017479", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22077", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22077", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525252", "url": "https://www.ncbi.nlm.nih.gov/gene/100525252", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QWQHNAT", "url": "https://omabrowser.org/oma/group/QWQHNAT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXC5", "url": "https://www.orthodb.org/?gene=F1RXC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF02205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653963", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653963", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BIC0", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNN7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXC5", "url": "https://www.uniprot.org/uniprotkb/F1RXC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXC5-1", "url": "https://www.uniprot.org/uniprotkb/F1RXC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTELPKLSRDEQRGRGALLQDICKGTKLKKVTNINDRSAPILEKPKGSSGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDGSENLAGKPALQVPSSRAAAPRPPVSTASGRPQDDTDSNRASLPELPRTQRPSLPDLSRPHATSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSNKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLQSNRPPPPARDPPSRGAAPPPPPPMIRNGARDAPPPPPPYRMHGSEPLSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHFQRVYPSKTNRAARGAPPLPPILR", "length": 440, "header": "tr|F1RXC5-1|F1RXC5_PIG Isoform 1 of WAS/WASL interacting protein family member 2 OS=Sus scrofa OX=9823 GN=WIPF2 PE=1 SV=1 CANONICAL=F1RXC5-1" }, "isoforms": [ { "isoform_ac": "A0A287BIC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIC0/entry", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTELPKLSRDEQRGRGALLQDICKGTKLKKVTNINDRSAPILETPPPPPPMIRNGARDAPPPPPPYRMHGSEPLSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHFQRVYPSKTNRAARGAPPLPPILR", "length": 182, "header": "tr|A0A287BIC0-1|A0A287BIC0_PIG Computationally mapped isoform of WAS/WASL interacting protein family member 2 OS=Sus scrofa OX=9823 GN=WIPF2 PE=4 SV=1 CANONICAL=F1RXC5-1" }, "locus": { "chromosome": "12", "start_pos": 22143375, "end_pos": 22123979, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095557.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095557.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078073.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078073.1" } ] } }, { "isoform_ac": "A0A8W4FNN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNN7/entry", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTELPKLSRDEQRGRGALLQDICKGTKLKKVTNINDRSAPILEKPKGSSGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDGSENLAGKPALQVPSSRAAAPRPPVSTASGRPQDDTDSNRASLPELPRTQRPSLPDLSRPHATSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSNKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLQSNRPPPPARDPPSRGAAPPPPPPMIRNGARDAPPPPPPYRMHGSEPLSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHFQRVYPSKTNRGEKYGHGGLL", "length": 437, "header": "tr|A0A8W4FNN7-1|F1RXC5_PIG Computationally mapped isoform of WAS/WASL interacting protein family member 2 OS=Sus scrofa OX=9823 GN=WIPF2 PE=1 SV=1 CANONICAL=F1RXC5-1" }, "locus": { "chromosome": "12", "start_pos": 22143375, "end_pos": 22124431, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093284.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093284.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080975.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080975.1" } ] } }, { "isoform_ac": "F1RXC5-1", "url": "https://www.uniprot.org/uniprotkb/F1RXC5/entry", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTELPKLSRDEQRGRGALLQDICKGTKLKKVTNINDRSAPILEKPKGSSGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDGSENLAGKPALQVPSSRAAAPRPPVSTASGRPQDDTDSNRASLPELPRTQRPSLPDLSRPHATSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSNKAPAYNREKPLPPTPGQRLHPGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPSLQSNRPPPPARDPPSRGAAPPPPPPMIRNGARDAPPPPPPYRMHGSEPLSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHFQRVYPSKTNRAARGAPPLPPILR", "length": 440, "header": "tr|F1RXC5-1|F1RXC5_PIG Isoform 1 of WAS/WASL interacting protein family member 2 OS=Sus scrofa OX=9823 GN=WIPF2 PE=1 SV=1 CANONICAL=F1RXC5-1" }, "locus": { "chromosome": "12", "start_pos": 22143375, "end_pos": 22123979, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019030.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019030.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018525.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018525.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 212, "start_aa": "Thr", "end_pos": 212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 300, "start_aa": "Thr", "end_pos": 300, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr300", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNN7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PJQ6-1", "protein_name": "WAS/WASL interacting protein family member 2", "gene_name": "WIPF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFSQANTEPPKLSREEQRGRGALLQDICKGTKLKKVTQINDRSAPILEKPKGGSGSSYGSSSAAIQPKGGLFQGGVPKLRPVGAKDSSDSSGKQTLQVPGSRAAAPRPPVPASNSRPQDDSDNSRASPPELPRTQRPSLPDLSRPGTAGGTGMKHSSSAPPPPPPGRRATAPPAPPPAHGPKVSSYNREKPLPPTPGQRAPAGRDGPPAPPPVKPPPSPVSIRTGSGAQSQSLAPPPPPYRQPPSVPNGPSSPITESAPELPQRHNSLHRKTPGPLRGLAPPPPASASPSLQSSRPPPPARDPPSRGAAPPPPPPMLRNGGRDAPPPPPPYRLHGSTEPPSRGKPPPPPTRTPAGPPPPPPPVRNGHRDSIATVRAFLDDFESKYSFHPVEDFPAPEEYKYFQRIYPSKTNRATRGAPPLPPIPR", "length": 442 }, "evidence": [ { "id": "F1RXC5", "url": "https://omabrowser.org/oma/group/F1RXC5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2M748-1", "protein_name": "WAS/WASL-interacting protein family member 2 isoform X1", "gene_name": "Wipf2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTEQPKLSRDEQRNRGALLQDICKGTKLKKVTNINDRSAPVIEKPKGSGGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDASETLAGKTALQVPSSRAAAPRPPVSTAGGRPQDDSDSSRASLPELPRMQRPSLPDLSRPNTTSGTGMKHSSSAPPPPPPGRRANAPPTPLPLHNSKAQAYNREKPLPPTPGQRLHPSREGHPAPPPVKPPPSPVNIRSGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSASPFLLSNRPPPPARDPPSRGAAPPPPPPMVRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHLQRVYPSKTNRAARGAPPLPPILR", "length": 440 }, "evidence": [ { "id": "F1RXC5", "url": "https://omabrowser.org/oma/group/F1RXC5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6PEV3-1", "protein_name": "WAS/WASL-interacting protein family member 2", "gene_name": "Wipf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPIPPPPPPPPGPPPPPTFNQANTEQPKLSRDEQRNRGALLQDICKGTKLKKVTNVNDRSAPVIEKPRGSSGGYGPGAAALQPKGGLFQGGVPKLRPVGAKDASEAPAGKPALQVPSSRAAAPRPPGSAASGRPHDDTDSNRASLPELPRMQRPSLPDLSRPNTASGTGMKHSSSAPPPPPPGRRANAPPTPLPLHSNKAQAYNREKPLPPTPGQRLHPGREGHPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLAPPPPTSATPSLLSNRPPPPAREPPSRGAAPPPPPPMIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGPPPPPPPPLRNGHRDSITTVRSFLDDFESKYSFHPVEDFPAPEEYKHLQRVYPSKTNRAARGAPPLPPILR", "length": 440 }, "evidence": [ { "id": "F1RXC5", "url": "https://omabrowser.org/oma/group/F1RXC5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1RXC5", "url": "https://www.uniprot.org/uniprotkb/F1RXC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXC5" }, { "id": "PS51082", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WH2", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 53, "start_aa": "Gly", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 212, 300 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 270, "end_pos": 272 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "F1S3J7-1", "uniprot_ac": "F1S3J7", "uniprot_id": "F1S3J7_PIG", "mass": { "chemical_mass": 103353.0, "monoisotopic_mass": 103353.0 }, "refseq": {}, "gene_names": [ { "name": "PAPLN", "type": "recommended", "evidence": [ { "id": "F1S3J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ] } ], "protein_names": [ { "name": "Papilin, proteoglycan like sulfated glycoprotein", "type": "synonym", "evidence": [ { "id": "F1S3J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3J7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PAPLN", "url": "https://www.uniprot.org/uniprotkb/F1S3J7", "locus": { "chromosome": "7", "start_pos": 96625052, "end_pos": 96598584, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002341", "url": "https://www.ensembl.org/id/ENSSSCG00000002341" } ] } } ], "crossref": [ { "id": "F1S3J7", "url": "https://alphafold.ebi.ac.uk/entry/F1S3J7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002341", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002341", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22635", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22635", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KLDSGWF", "url": "https://omabrowser.org/oma/group/KLDSGWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10075", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10075", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10075:SF103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10075:SF103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16626", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16626", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FP30", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP30-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3J7-1", "url": "https://www.uniprot.org/uniprotkb/F1S3J7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCQHQPRPADRRPCSPQPCPHTKRWKTGPWTPCSASCGGGSQSRSVFCISSDGAGVQEATEDAECAGLPGKPPTTQACNMQRCAVWRTEPWGECSVSCGAGVRRRSVTCQGDEGSLLHATECSLGDRPPLTEPCVRDDCPPLSDQAWHVGAWGLCSQSCSSGTRRRQVICATGPPSHCRSLQWSKPADVEPCNTQPCHLPPEVPSIQDAHTSPRDPWMSLGPREAPASDFRGQRWAPREQPSARGNPRGDQSPHLLARGPAPSLQHPSYRQPLWSGSGPQDCRHSPHGCCPDGHTTSLGPQWQGCPGASCHQSRFGCCPDGVSVAEGPHQAGCSRSYGRDNTGSRPGSRAVASTAPKARQPQAQQNEPSECRASQFGCCYDNVASAAGPLGEGCVGQPSYAYPVRCLLPSAHGSCTDWAARWYFIASVGQCNRFWYGGCHGNANNFASEEACMNSCRGPQHGPRRSGPGASGQSIHRDGGGSGPGGQQEAGRHGTGPKVQRKPLPSGGPWWRDRESGLGAVDHRQAFGEWHQGQELGPSAPGLGSDTRRHVPPSHSNSYRIALVGSESSLVQAALGQVVRLFCPDDTSLDTRWQKDGRPVSSDRHKLQPDGSLVISPLRAEDAGIYSCGSTRPDRDSGKIRLRITGDDMAVLSEAETRHFPQTRDPSLEGDAGSLGAVSSSHPQPTTRLRLDRNQPRVVDAHPGQRTRLTCRAEGFPPAAIEWQRDGQPLSSPRHQVQPDGSLVISHVAVEDGGFYTCVAFNGQDRDQRWVQLRVLGELTITGLPSTMTVPEGDTARLLCVVAGESVNIRWSRNGLPVWADGHRVHQSPDGTLLIHNLQARDAGSYTCSAYRGNQAVSRSTEVKVVPPALATQPKDPSRDCVDQPELANCDLILQAQLCGNEYYSSFCCASCSRFQPPAQPIWQRGRRLAAAPVPRQRLGLGARETGSRSPPSGWQRQLSS", "length": 961, "header": "tr|F1S3J7-1|F1S3J7_PIG Isoform 1 of Papilin, proteoglycan like sulfated glycoprotein OS=Sus scrofa OX=9823 GN=PAPLN PE=1 SV=3 CANONICAL=F1S3J7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FP30-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP30/entry", "sequence": { "sequence": "MCQHQPRPADRRPCSPQPCPHTKRWKTGPWTPCSASCGGGSQSRSVFCISSDGAGVQEATEDAECAGLPGKPPTTQACNMQRCAVWRTEPWGECSVSCGAGVRRRSVTCQGDEGSLLHATECSLGDRPPLTEPCVRDDCPPLSDQAWHVGAWGLCSQSCSSGTRRRQVICATGPPSHCRSLQWSKPADVEPCNTQPCHLPPDFRGQRWAPREQPSARGNPRGDQSPHLLARGPAPSLQHPSYRQPLWSGSGPQDCRHSPHGCCPDGHTTSLGPQWQGCPGASCHQSRFGCCPDGVSVAEGPHQAGCSRSYGRDNTGSRPGSRAVASTAPKARQPQAQQNEPSECRASQFGCCYDNVASAAGPLGEGCVGQPSYAYPVRCLLPSAHGSCTDWAARWYFIASVGQCNRFWYGGCHGNANNFASEEACMNSCRGPQHGPRRSGPGASGQSIHRDGGGSGPGGQQEAGRHGTGPKVQRKPLPSGGPWWRDRESGLGAVDHRQAFGEWHQGQELGPSAPGLGSDTRRHVPPSHSNSYRIALVGSESSLVQAALGQVVRLFCPDDTSLDTRWQKDGRPVSSDRHKLQPDGSLVISPLRAEDAGIYSCGSTRPDRDSGKIRLRITGDDMAVLSEAETRHFPQTRDPSLEGDAGSLGAVSSSHPQPTTRLRLDRNQPRVVDAHPGQRTRLTCRAEGFPPAAIEWQRDGQPLSSPRHQVQPDGSLVISHVAVEDGGFYTCVAFNGQDRDQRWVQLRVLGELTITGLPSTMTVPEGDTARLLCVVAGESVNIRWSRNGLPVWADGHRVHQSPDGTLLIHNLQARDAGSYTCSAYRGNQAVSRSTEVKVVPPALATQPKDPSRDCVDQPELANCDLILQAQLCGNEYYSSFCCASCSRFQPPAQPIWQRGRRLAAAPVPRQRLGLGARETGSRSPPSGWQRQLSS", "length": 934, "header": "tr|A0A8W4FP30-1|F1S3J7_PIG Computationally mapped isoform of Papilin, proteoglycan like sulfated glycoprotein OS=Sus scrofa OX=9823 GN=PAPLN PE=1 SV=1 CANONICAL=F1S3J7-1" }, "locus": { "chromosome": "7", "start_pos": 96622056, "end_pos": 96599623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092648.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092648.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080937.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080937.1" } ] } }, { "isoform_ac": "F1S3J7-1", "url": "https://www.uniprot.org/uniprotkb/F1S3J7/entry", "sequence": { "sequence": "MCQHQPRPADRRPCSPQPCPHTKRWKTGPWTPCSASCGGGSQSRSVFCISSDGAGVQEATEDAECAGLPGKPPTTQACNMQRCAVWRTEPWGECSVSCGAGVRRRSVTCQGDEGSLLHATECSLGDRPPLTEPCVRDDCPPLSDQAWHVGAWGLCSQSCSSGTRRRQVICATGPPSHCRSLQWSKPADVEPCNTQPCHLPPEVPSIQDAHTSPRDPWMSLGPREAPASDFRGQRWAPREQPSARGNPRGDQSPHLLARGPAPSLQHPSYRQPLWSGSGPQDCRHSPHGCCPDGHTTSLGPQWQGCPGASCHQSRFGCCPDGVSVAEGPHQAGCSRSYGRDNTGSRPGSRAVASTAPKARQPQAQQNEPSECRASQFGCCYDNVASAAGPLGEGCVGQPSYAYPVRCLLPSAHGSCTDWAARWYFIASVGQCNRFWYGGCHGNANNFASEEACMNSCRGPQHGPRRSGPGASGQSIHRDGGGSGPGGQQEAGRHGTGPKVQRKPLPSGGPWWRDRESGLGAVDHRQAFGEWHQGQELGPSAPGLGSDTRRHVPPSHSNSYRIALVGSESSLVQAALGQVVRLFCPDDTSLDTRWQKDGRPVSSDRHKLQPDGSLVISPLRAEDAGIYSCGSTRPDRDSGKIRLRITGDDMAVLSEAETRHFPQTRDPSLEGDAGSLGAVSSSHPQPTTRLRLDRNQPRVVDAHPGQRTRLTCRAEGFPPAAIEWQRDGQPLSSPRHQVQPDGSLVISHVAVEDGGFYTCVAFNGQDRDQRWVQLRVLGELTITGLPSTMTVPEGDTARLLCVVAGESVNIRWSRNGLPVWADGHRVHQSPDGTLLIHNLQARDAGSYTCSAYRGNQAVSRSTEVKVVPPALATQPKDPSRDCVDQPELANCDLILQAQLCGNEYYSSFCCASCSRFQPPAQPIWQRGRRLAAAPVPRQRLGLGARETGSRSPPSGWQRQLSS", "length": 961, "header": "tr|F1S3J7-1|F1S3J7_PIG Isoform 1 of Papilin, proteoglycan like sulfated glycoprotein OS=Sus scrofa OX=9823 GN=PAPLN PE=1 SV=3 CANONICAL=F1S3J7-1" }, "locus": { "chromosome": "7", "start_pos": 96622056, "end_pos": 96599623, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002605.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002605.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002540.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002540.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP30", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZGF6-1", "protein_name": "Papilin", "gene_name": "PAPLN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MHVHHQEKNTETKTRVTRMQMKNLLFLFLLAVMLPSAFSGHRMKRQTGVWGSWGEWGKCSRSCGGGVSVRQRHCYFQRTESASSCIGPTRSYRSCNIQSCPEGSRDFRAEQCAEFDGTEFQGKKYKWLPYYGAPNKCELNCIPKGENFYYRHKETVIDGTTCEPGKRDICVEGVCQAVGCDNILESTKKEDKCLQCGGDNSTCYDVKGTFDVPNLPKGYNQIFIIPVGATSIQIKEVMPSRNFMAVKNVQGDYYLNGHWTIDFSRTLHIASTVMHYDRGSEGDLAPELLHARGPTTEPLVIELISQEPNPGVQYEYYLPMHRQTTGYSWSYSSWSECSSECGGGFQTRLVFCTIDNEIYPDYMCRNKPQPDNNRTCGHQTCPQTKRTSYIFPPRAWSHGGARNSQMKRWKTGEWGPCSATCGGGTQTRSVYCVAFDGQNSQGVVDNAECMAFAQQPHSSQPCNRRQCATWSTGPWSECSASCGEGVQTRTVTCRTQHGSQAQDFACLMEPKPPATQPCLKENCIQEVGWHVGDWGLCSKSCNSGIRTRQVICADGDSKFYSADICKAIQPQKPATLGSCNVQPCYLPQQVPSMQDTMGYDTSRRSLLTRYNPDSPPTDSGDGRLLPGSSTVHSSSGNYHINSTEDHGINLLPVRWESQSRSSNYHHLNITQYPTTGTGSQNCYQTPHGCCPDGHTPASGPLGRGCSFNTCHQNRYGCCPDGVSAARGPNNMGCPQYDSDVHMRRNQPAAAVPTASQALSQQHPSGECRSSVYGCCFDNVASASGPEGEGCLNRPNYPYPVMCLLPSAHGPCANWTTRWYFVTVVGKCNRFWYGGCHGNKNSFASEEECMRVCHSSVGISPLEHQPSSGTRTLQQQDTGSRFHMDTAQGKQQPLPGESSSHGQEGRAYGASHRTQNRHGENYWRRQVLPETLQRSSVMESQQWGTQQSRLKSLSQLHLTGETAVPGPSQKLSSSGQQVLPREGKQWHKASGTDASMIEGFGHQVSADSFPAQNLHRAILEEAKPSLVTAIMGQNIQLVCKASLSPFSRVEWMKDGRPVSSDRHTYQSDSSLVISHVKLEDAGTYTCLISDGRTESRRQIQLQIVEYQSAVLAEGERGQVLHKENQRQRELPRGGKVIQAAGSSVHPQFTYRLRMDKSEPSVVETKVGERVRLPCTVEASPALTIEWQKDGQPLSPPRHRQQSDGALVISRVSSEDAGFFTCIASNGRDQDQRQVLLRPLGGLRITGLLPSIKVSEGETAQLHCTVTGNNVNIRWSRNGVPVRADGRHIHLSQDGSLTISNIQLADEGSYTCSAYSSSNSVSASTEVKVLRSRPSTTVNHVVDLSRECVDQPHLANCGLIVQAQLCGNEYYASFCCASCSHYQPHASPPHRSG", "length": 1391 }, "evidence": [ { "id": "F1S3J7", "url": "https://omabrowser.org/oma/group/F1S3J7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9RVQ1-1", "protein_name": "Papilin", "gene_name": "PAPLN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPVLETARKENLAQSCLTLCDPMDCLCNAWNSPGQNTGAPQVRQQSDTWGSWGNWSPCSRTCGGGVSFRERPCYTQRRDGGSSCVGPTRSHRSCRTESCPDGSRDFRAEQCAEFDSHEFQGRRYKWLPYYGAPNKCELNCIPKGESFYYKHKEAVVDGTPCEPGRRDICVDGSCRVVGCDHHLDSSKEEDKCLRCGGDGTTCYPVTGVFEANDLSRGYNQILIVPMGATSIRIEEAAASRNFLAVKSIRGEYYLNGHWTIEGARALPVASTLLHYERGAEGDLAPERLHARGPTSEPLVIELISQEPNPGVHFEYHLPLGALQPGFSWSHGSWGDCSAECGGGQQTRRVFCTMDNEVYPEHLCQPQSRPADRRPCSLQPCPHTKRTSYLHRPRAWHLAGAQRVCRSSWKTGPWTLCSASCGGGSQSRSVYCVLSDGASAQEAAEDAECEGLPEKPPGTRACNLQRCAGWSVEPWSECSVSCGAGVRRRSVTCRGDEGSRLHATACSLEDRPPLTEPCVHDDCPPLSDQAWHVGAWGLCSKSCSSGTRRRQVVCALGPPGRCGSLQPSKPPAVEACNTQPCDLPPEVPSMPEVHTSPRDPRMSLGPREASASGFRDQWWAPQEQPSARGNPRGDQSPLLSAPGPALSLQLSSYQQPLRPGSGPRDCRLSSHGCCPDGHTMSLGPQWQGCPGASSCQQSRFGCCPDGVTAAKGPHQAGCTSSYGRDNAGGRPGSRAAASTVPNAHRPQAQQNEPSECRGSQFGCCYDHVAPAAGPLGEGCVGQPSSAYPVRCLLPSAHGSCTDWAARWYFVPSVGQCNRFWYGGCHGNANNFASEEECVSACRGPQPGAGASGQSTHGDGGSSGPGGQQEASQHGPGPMVQRGPLPSGGLRWQDQEPGPGVTDHRQAFGEGPWGQETGPSPPGLSGDAGRPAPPSRGSSYRITLAGSEPSVVQAAVGQLVRLFCPEDGSPDPHSRWQKDGRPVSSDRHQLQSDGSLVISPLRAEDAGTYSCGGPGPDRHSQQVQLHVTGGDVAMPSEAEPRHFPETRDPAQDHSPRDPSRGGPAAASHPWPLTRVRLDRSQPGVLDAQPGQRVRLTCRAEGFPPPTIEWQRDGQPLSSPRHQLQSDGSLVISRVAVEDGGFYTCVAFNGHDRDQRWVQLRVLGELTITGLPSTMEVPEGDTARLLCVVAGESVNIRWSRNGLPVRADGHRVHQSPDGTLLIHNLRARDEGSYTCSAYRGSQAVSRSTEVKVVPPVLATQPRDPSRDCVDQPELANCDLILQARLCGNEYYSSFCCASCSRVQPPAQPVWQQGHSS", "length": 1313 }, "evidence": [ { "id": "F1S3J7", "url": "https://omabrowser.org/oma/group/F1S3J7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZD40-1", "protein_name": "Papilin", "gene_name": "Papln", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLASAQGCGYSGYPAPMPADSHRFFYCDAALGLQLLEPGCSERLQKLERVGTEMQLLLLLSLLLLLASTPGSWAQNVRRQSDTWGAWGEWSPCSRTCGGGISFRERPCYSQRRDGGASCVGPARSHRTCHTESCPDSVRDFRAEQCAEFDGTDFQGRRYRWLPYYAAPNKCELNCIPKGQNFYFKHRDAVVDGTPCEPGKRDICVEGVCRVVGCDHKLDSTKQEDKCLQCGGDGSSCYPITGTFDANDLSRGYNQIFIIPAGATSIHIEEADASRNFLAVKSIRGEYYLNGHWTIEEAQALPVASTVLQYERGVEGDLAPERLQARGPTSEPLVIELIIQESNPGVHYEYYLPVNDPGRSFSWSYGSWGDCSAECGGGHQSRLVFCTIDNEAYPDHMCQHQPRPAHRRSCNTHPCPKTKRWKVGPWTPCSVSCGGGFQSRSVYCVSSDGTGGQEAAEETQCAGLAGKPPTTQACNLQRCAVWSVEPWGECSVTCGAGIRKRSVTCRGDEDSLVHPAACSLKDQPTLTEPCVREACPGFRGQAWHVGSWSLCSKSCGSGIRRRQVVCTIGPPGRCVDLQSSKPAEVEACNRQPCHLPQEVPSIQDSRTHPSDRRMLSGPQVSPVADARDQQWATLERPRAQSNPREGQDSHLSSAGRAPTLQHPPHQPPLRPSSGARDCRHSPHGCCPDGHTPSLGPQWQGCPLAGASCLKSRYGCCPDGVSAAKGPQQAGCTRSHSSDNTGNRPGSRAVVSKDPKIHQSQAHPSEISECRSSQFGCCYDNVAFAAGPLGEGCVGQPSYAYPVRCLLPSAQGSCGDWAARWYFVGSVGRCNRFWYGGCHGNANNFATEQECMDTCRGQHGPRRPEAGAAGHRVHMDGGQRGPGGQQEPDWHRIEATVPRLPSPSGSPWSREQEPGPGQAPHIPAQGKRPRVPGLDRDARPPVRPTHSPSYRINLADSEPSLVQAAPGQAVQLFCPGNIPPEFQAGWQKEGRPISSNRYQLQADGSLIISPLRPEDAGIYSCGSQRSGHEPQKIQLRVTGGDMAVLSEVQPRHFPETRNPDPGHSPQNRGIGVGAEGHRVLSSSHPRPATRLRLDRTQPGVIDASPGQQIQLTCHAEGFPVPTIEWQRDGQLVSSPRHQVQHDGSLVISRVTVEDGGFYTCVAFNGHDRDQRWVQLRVQRELTITGLPPAMTVPEGDTARLLCVVAGDSVNIRWSRNGLPIQADGHRVHQSPDGTLLIHNLRPRDEGSYTCSAFRGSQAVSRSTEVKVALPAAPAAQSRDLGKDCIDQPELANCALILQAQLCGNEYYSSFCCASCSRFQPNAQPGWQQG", "length": 1328 }, "evidence": [ { "id": "F1S3J7", "url": "https://omabrowser.org/oma/group/F1S3J7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O95428-1", "protein_name": "Papilin", "gene_name": "PAPLN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLLLLVPLLLAPAPGSSAPKVRRQSDTWGPWSQWSPCSRTCGGGVSFRERPCYSQRRDGGSSCVGPARSHRSCRTESCPDGARDFRAEQCAEFDGAEFQGRRYRWLPYYSAPNKCELNCIPKGENFYYKHREAVVDGTPCEPGKRDVCVDGSCRVVGCDHELDSSKQEDKCLRCGGDGTTCYPVAGTFDANDLSRGYNQILIVPMGATSILIDEAAASRNFLAVKNVRGEYYLNGHWTIEAARALPAASTILHYERGAEGDLAPERLHARGPTSEPLVIELISQEPNPGVHYEYHLPLRRPSPGFSWSHGSWSDCSAECGGGHQSRLVFCTIDHEAYPDHMCQRQPRPADRRSCNLHPCPETKRWKAGPWAPCSASCGGGSQSRSVYCISSDGAGIQEAVEEAECAGLPGKPPAIQACNLQRCAAWSPEPWGECSVSCGVGVRKRSVTCRGERGSLLHTAACSLEDRPPLTEPCVHEDCPLLSDQAWHVGTWGLCSKSCSSGTRRRQVICAIGPPSHCGSLQHSKPVDVEPCNTQPCHLPQEVPSMQDVHTPASNPWMPLGPQESPASDSRGQWWAAQEHPSARGDHRGERGDPRGDQGTHLSALGPAPSLQQPPYQQPLRSGSGPHDCRHSPHGCCPDGHTASLGPQWQGCPGAPCQQSRYGCCPDRVSVAEGPHHAGCTKSYGGDSTGGMPRSRAVASTVHNTHQPQAQQNEPSECRGSQFGCCYDNVATAAGPLGEGCVGQPSHAYPVRCLLPSAHGSCADWAARWYFVASVGQCNRFWYGGCHGNANNFASEQECMSSCQGSLHGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQHRTGAAVQRKPWPSGGLWRQDQQPGPGEAPHTQAFGEWPWGQELGSRAPGLGGDAGSPAPPFHSSSYRISLAGVEPSLVQAALGQLVRLSCSDDTAPESQAAWQKDGQPISSDRHRLQFDGSLIIHPLQAEDAGTYSCGSTRPGRDSQKIQLRIIGGDMAVLSEAELSRFPQPRDPAQDFGQAGAAGPLGAIPSSHPQPANRLRLDQNQPRVVDASPGQRIRMTCRAEGFPPPAIEWQRDGQPVSSPRHQLQPDGSLVISRVAVEDGGFYTCVAFNGQDRDQRWVQLRVLGELTISGLPPTVTVPEGDTARLLCVVAGESVNIRWSRNGLPVQADGHRVHQSPDGTLLIYNLRARDEGSYTCSAYQGSQAVSRSTEVKVVSPAPTAQPRDPGRDCVDQPELANCDLILQAQLCGNEYYSSFCCASCSRFQPHAQPIWQ", "length": 1278 }, "evidence": [ { "id": "F1S3J7", "url": "https://omabrowser.org/oma/group/F1S3J7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" }, { "name": "cell-cell adhesion mediator activity", "id": "GO:0098632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098632", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1S3J7", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S3J7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 961, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S3J7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S3J7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S3J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" }, { "id": "PS50279", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50279" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BPTI/Kunitz inhibitor", "eco_id": "ECO_0000259", "start_pos": 406, "end_pos": 456, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S3J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 553, "end_pos": 645, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S3J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S3J7" }, { "id": "PS50900", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50900" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PLAC", "eco_id": "ECO_0000259", "start_pos": 877, "end_pos": 916, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RP84-1", "uniprot_ac": "F1RP84", "uniprot_id": "F1RP84_PIG", "mass": { "chemical_mass": 34662.0, "monoisotopic_mass": 34662.0 }, "refseq": {}, "gene_names": [ { "name": "SPACA6", "type": "recommended", "evidence": [ { "id": "F1RP84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RP84" } ] } ], "protein_names": [ { "name": "Sperm acrosome associated 6", "type": "synonym", "evidence": [ { "id": "F1RP84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RP84/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RP84", "url": "https://www.uniprot.org/uniprotkb/F1RP84" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPACA6", "url": "https://www.uniprot.org/uniprotkb/F1RP84", "locus": { "chromosome": "6", "start_pos": 58321856, "end_pos": 58331573, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003238", "url": "https://www.ensembl.org/id/ENSSSCG00000003238" } ] } } ], "crossref": [ { "id": "F1RP84", "url": "https://alphafold.ebi.ac.uk/entry/F1RP84", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003238", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003238", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR37366", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37366", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37366:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37366:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1RP84", "url": "https://www.uniprot.org/uniprotkb/F1RP84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RP84-1", "url": "https://www.uniprot.org/uniprotkb/F1RP84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLAPASTVPSALVALSVFGASAWACLLCFTSYNERLQICQIFPGLESPALGKCEEAFTEAFKGLLDTEIHYDERSHLHDAFTQMTHSLQEVAAAQGSFRVAFPLAARKMRKVISQLKEVPACVPPCGLQEVARRFHCRGCYSTVCDLPLDCPVQDVTVTRGHQAMFSCTVNFQLPKEEITYSWKFAGGLRTQDVSYFRDIPRAEGYLARIRPVQPKHRGTFSCVITHDQRPLARLYFFLNVTGPPPRGETELQLTFREVLRWAPREAEVIEPWSPSLGELLASPEALTSGNQCLLAALVALASACVTVLAW", "length": 313, "header": "tr|F1RP84-1|F1RP84_PIG Isoform 1 of Sperm acrosome associated 6 OS=Sus scrofa OX=9823 GN=SPACA6 PE=4 SV=5 CANONICAL=F1RP84-1" }, "isoforms": [ { 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[], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RP84", "url": "https://www.uniprot.org/uniprotkb/F1RP84" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological 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Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. 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"SPCPRIALCWPGLTPCSQPQNGCGASAPSSTVPNNGFTLGASGGKDSTVLAHVLRELAPRLGISLRLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLVGATHVVTGHNADDMAEMVLMNFLRGDAGRLARGGGLGSPGEGGALPRCRPLQLASQKEVVLYAHFRRLDYFSEECVYAPEAFRGHARDLLKQLEAARPSAVLDLVHSAERLALAPAARPPPPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEGPPGAPPREPSGRPASERAPAF", "length": 332, "header": "tr|F1RP87-1|F1RP87_PIG Isoform 1 of Cytoplasmic tRNA adenylyltransferase 1 OS=Sus scrofa OX=9823 GN=LOC100516084 PE=4 SV=4 CANONICAL=F1RP87-1" }, "isoforms": [ { "isoform_ac": "F1RP87-1", "url": "https://www.uniprot.org/uniprotkb/F1RP87/entry", "sequence": { "sequence": "SPCPRIALCWPGLTPCSQPQNGCGASAPSSTVPNNGFTLGASGGKDSTVLAHVLRELAPRLGISLRLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLVGATHVVTGHNADDMAEMVLMNFLRGDAGRLARGGGLGSPGEGGALPRCRPLQLASQKEVVLYAHFRRLDYFSEECVYAPEAFRGHARDLLKQLEAARPSAVLDLVHSAERLALAPAARPPPPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEGPPGAPPREPSGRPASERAPAF", "length": 332, "header": "tr|F1RP87-1|F1RP87_PIG Isoform 1 of Cytoplasmic tRNA adenylyltransferase 1 OS=Sus scrofa OX=9823 GN=LOC100516084 PE=4 SV=4 CANONICAL=F1RP87-1" }, "locus": { "chromosome": "6", "start_pos": 58396490, "end_pos": 58392616, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103109.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103109.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077934.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077934.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RP87", "url": "https://www.uniprot.org/uniprotkb/F1RP87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q0VC66-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGALPRCRPLQFASQKEVVLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAARPPRPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASKAVPTF", "length": 348 }, "evidence": [ { "id": "F1RP87", "url": "https://omabrowser.org/oma/group/F1RP87/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tRNA wobble position uridine thiolation", "id": "GO:0002143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002143", "evidence": [ { "database": "UniProtKB", "id": "F1RP87", "url": "https://www.uniprot.org/uniprotkb/F1RP87" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "tRNA binding", "id": "GO:0000049", "url": 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domain containing 10 like OS=Sus scrofa OX=9823 GN=VSIG10L PE=1 SV=3 CANONICAL=F1RP94-1" }, "locus": { "chromosome": "6", "start_pos": 58531220, "end_pos": 58521021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055632.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055632.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058017.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058017.3" } ] } }, { "isoform_ac": "F1RP94-1", "url": "https://www.uniprot.org/uniprotkb/F1RP94/entry", "sequence": { "sequence": "MRTSRVGWVAPQADPAIPPPLSSAASRVGVLALRASSGIQKTNISSDSKSSPQGSQVPSIKLPSRKFPDQSPDSKASAEVPHSEWSPEALNSSDMPGSFWSNVSAESHSLNLGPFSGIPDSEVFPDTLGSQVPTRSPGAPISSVKTPASNTAAQVPSTKASRETSVPKFSSEDLDLEFSAQSLDSQVPAEAPRGASFPSKVEGPLSVLVGTNLQLPLVPVPSPGPPAPLVVWRRGSKVLAAGALGPGAPLISLDPTYRDRLQFDQARGGLELTSTQLEDAGVYTAEVIRAGVSRQIREFTVGVFEPLPKLSVQPQAPETEEGAAELRLRCMGWEPGRGELSWTRDGRALEAADPEGAEPPRIRTEGDQLLIARPVRSDHARYTCRVHSPFGHTEAAADVSVFYGPDLPVITISSNRDADPALYVTAGSNVTLRCTAASRPPADIAWSLADPAEAAVPAGPRLLLPAVRPGHAGAYACLAANPRTGRRRRSLLNLTVADLPPGSPQCSVEGGPGDRSLRFRCSWPGGVPAASLQFQGLPKGVRAGPESSALLAVVPAHPRLSGVPVTCLARHLVTTRTCTVTPEAPREVLLHPMVEETRSGEAGVALEASGCPPPSRASWAREGRPLAPGGGGRLRLSQDGRRLLISNFSLDWDLGNYSVLCSGALGAGGDHITLLGPSISSWRLQRTRDAAVLTWDVERGALISGFQIQARSEGPDLGRATASRDWVSLLILGPRERSAVVPLPPRNPRTWVFRILPTLGGQPGTPTQSQVYQAGPTLSPGTIAGIVLGSLLGLALLAALLLLCICCLCRFRGETLKKKKQPPTLSPVFPLPEKKLQSVTPLQTARPPPFEVPLEDPSPPGALPVSVGAPVPWNGHRHFCVLFRVKR", "length": 887, "header": "tr|F1RP94-1|F1RP94_PIG Isoform 1 of V-set and immunoglobulin domain containing 10 like OS=Sus scrofa OX=9823 GN=VSIG10L PE=1 SV=4 CANONICAL=F1RP94-1" }, "locus": { "chromosome": "6", "start_pos": 58531220, "end_pos": 58520831, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003587.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003587.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003504.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003504.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 425, "start_aa": "Thr", "end_pos": 425, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr425", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": 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"title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPA5", "url": "https://www.uniprot.org/uniprotkb/F1RPA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511500", "resource": "KEGG 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[ "Protein" ] } ], "sequence": { "sequence": "MKPTPAGSSPEACKAAGQAPQQKTQVTPVLASRQKVLVTGGGGYLGFTLGSSLAKSGISVILLDLRRPQWELCPGTEFIQADVRDAEALHQAFEGVDCVFHVASYGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVPRLIYTSSVNVVFGGKPIEQGDEDSVPYVPLEKHMDHYSRTKAIADQLTLMANGTPLPGGGILRTCVLRPPGIYGPEEQRHLPRVAGHIKKRLFMFRFGDRRTRMNWVHVRNLAQAHVLAAEALTAAKGYVASGQAYYINDGESVNLFEWMAPLFEKLGHSQPWIQVPTSWVYLSATVMEYLHLALRPICSLPPLLTRSEVRSVTVTHTFQIAKARAQLGYAPDKFSFADAVDRYVQSTSGRTHSSTARTLLRLLLGLLLLLGLLALALHFLALQPSVV", "length": 417, "header": "tr|F1RPD6-1|F1RPD6_PIG Isoform 1 of Short chain dehydrogenase/reductase family 42E, member 2 OS=Sus scrofa OX=9823 GN=SDR42E2 PE=3 SV=4 CANONICAL=F1RPD6-1" }, "isoforms": [ { "isoform_ac": "F1RPD6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPD6/entry", "sequence": { "sequence": "MKPTPAGSSPEACKAAGQAPQQKTQVTPVLASRQKVLVTGGGGYLGFTLGSSLAKSGISVILLDLRRPQWELCPGTEFIQADVRDAEALHQAFEGVDCVFHVASYGMSGAEKLQKEQIESINVGGTKLVIDVCVRRRVPRLIYTSSVNVVFGGKPIEQGDEDSVPYVPLEKHMDHYSRTKAIADQLTLMANGTPLPGGGILRTCVLRPPGIYGPEEQRHLPRVAGHIKKRLFMFRFGDRRTRMNWVHVRNLAQAHVLAAEALTAAKGYVASGQAYYINDGESVNLFEWMAPLFEKLGHSQPWIQVPTSWVYLSATVMEYLHLALRPICSLPPLLTRSEVRSVTVTHTFQIAKARAQLGYAPDKFSFADAVDRYVQSTSGRTHSSTARTLLRLLLGLLLLLGLLALALHFLALQPSVV", "length": 417, "header": "tr|F1RPD6-1|F1RPD6_PIG Isoform 1 of Short chain dehydrogenase/reductase family 42E, member 2 OS=Sus scrofa OX=9823 GN=SDR42E2 PE=3 SV=4 CANONICAL=F1RPD6-1" }, "locus": { "chromosome": "3", "start_pos": 24023024, "end_pos": 23991246, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008592.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008592.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008371.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008371.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPD6", "url": "https://www.uniprot.org/uniprotkb/F1RPD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "steroid biosynthetic process", "id": "GO:0006694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006694", "evidence": [ { "database": "UniProtKB", "id": "F1RPD6", "url": "https://www.uniprot.org/uniprotkb/F1RPD6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "F1RPD6", "url": "https://www.uniprot.org/uniprotkb/F1RPD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RPD6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 417, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RPD6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RPD6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPD6" }, { "id": "PF01073", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01073" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "3-beta hydroxysteroid dehydrogenase/isomerase", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 302, "start_aa": "Leu", "end_aa": "Trp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 191, "end_pos": 193 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPE3-1", "uniprot_ac": "F1RPE3", "uniprot_id": "F1RPE3_PIG", "mass": { "chemical_mass": 36941.0, "monoisotopic_mass": 36941.0 }, "refseq": { "ac": "XP_001929360", "name": "solute carrier family 35 member E4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929360" }, "gene_names": [ { "name": "SLC35E4", "type": "recommended", "evidence": [ { "id": "F1RPE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ] }, { "name": "SLC35E4", "type": "synonym", "evidence": [ { "id": "XP_001929360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929360" } ] } ], "protein_names": [ { "name": "Solute carrier family 35 member E4", "type": "synonym", "evidence": [ { "id": "F1RPE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPE3/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 35 member E4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929360" } ] } ], "function": [ { "annotation": "Putative transporter.", "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3#function" }, { "database": "UniProtKB", "id": "ARBA00093767", "url": "https://www.uniprot.org/uniprotkb/ARBA00093767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC35E4", "url": "https://www.uniprot.org/uniprotkb/F1RPE3", "locus": { "chromosome": "14", "start_pos": 47526704, "end_pos": 47520089, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010012", "url": "https://www.ensembl.org/id/ENSSSCG00000010012" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100158095", "url": "https://www.ncbi.nlm.nih.gov/gene/100158095", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158095", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158095", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAGLNKW", "url": "https://omabrowser.org/oma/group/MAGLNKW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RPE3", "url": "https://www.orthodb.org/?gene=F1RPE3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11132", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11132", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03151", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03151", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPE3-1", "url": "https://www.uniprot.org/uniprotkb/F1RPE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCRCPPEHHDSRMTSAEVVALAGGARLAGSPEWPPDTPQALGRPGRARVAVAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLAAALACHRGAQRPMPGRTRRQVLLLSLTFGTSMACGNVGLNAVPLDLAQLATTTTPLITLALSGLLLGRRHHPLQFAAMGPLCLGAACSLAGELRTPPAGCGFLLVATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLVGAALVLEAGVAPPPAPTDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSTLSYVGIALTLSGMFLYHNCEFVASWAARRGFWRRDQPGKGL", "length": 350, "header": "tr|F1RPE3-1|F1RPE3_PIG Isoform 1 of Solute carrier family 35 member E4 OS=Sus scrofa OX=9823 GN=SLC35E4 PE=3 SV=3 CANONICAL=F1RPE3-1" }, "isoforms": [ { "isoform_ac": "F1RPE3-1", "url": "https://www.uniprot.org/uniprotkb/F1RPE3/entry", "sequence": { "sequence": "MCRCPPEHHDSRMTSAEVVALAGGARLAGSPEWPPDTPQALGRPGRARVAVAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLAAALACHRGAQRPMPGRTRRQVLLLSLTFGTSMACGNVGLNAVPLDLAQLATTTTPLITLALSGLLLGRRHHPLQFAAMGPLCLGAACSLAGELRTPPAGCGFLLVATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLVGAALVLEAGVAPPPAPTDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSTLSYVGIALTLSGMFLYHNCEFVASWAARRGFWRRDQPGKGL", "length": 350, "header": "tr|F1RPE3-1|F1RPE3_PIG Isoform 1 of Solute carrier family 35 member E4 OS=Sus scrofa OX=9823 GN=SLC35E4 PE=3 SV=3 CANONICAL=F1RPE3-1" }, "locus": { "chromosome": "14", "start_pos": 47526168, "end_pos": 47520775, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010969.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010969.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010683.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010683.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 250, "start_aa": "Thr", "end_pos": 250, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158095", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158095", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IJ18-1", "protein_name": "Solute carrier family 35 member E4", "gene_name": "Slc35e4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGRCPLQRHEGRMTSAEAVAVAGSAREHGRPKWPPDNPEVLGQPARARVVVAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLAAALACYWGARRPMPRIIQGRVLLLSLTFGTSMACGNVGLSTVPLDLAQLATTTTPLFTLGLSALLLGRRHHPLQFAAMGLLCLGAACSLAGEFRAPPVGCVFLLVATCLRGFKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVMEAGVAPPLAPTDSRLWACVLLSCCLSVVYNLASSSLLALTSALTVHVLGNLTVVGNLILSRLLFGTHLSDLSYVGIALTLSGMFVYHNCEFVASWATRRGLWHRDQPGKDLVECMNHT", "length": 357 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0X2P4-1", "protein_name": "Solute carrier family 35 member E4", "gene_name": "SLC35E4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MCPRCPGGDEAAMMAAGGTLRPRRTDPGQPGERPPLRLVLTVAAWLGTGTALAGLNKWIFAAHGFRYPLLLSSLHMLAAVALGYPLGWVRGPPPPVRPRARIYLLSLTFCGSVALGNLGLSLVPLDAAQAVHATAPLATLLLSALLRGRRHHPLQYAAMGPVCAGAACSIAGGVRFHQPGGCVLLAATVLRALKSLQQSLLLQEGRLDAVSLLCLTALPSFCLLFGTAVALEVAPAWQGVLRYDGSLWGCVLLSCLGSVLYNLASFCVLSLTSALTIHLLGNITVVGNLLLSRLLFGSRLSALSYLGIALTLAGMFMYQQPQLIARRWAVWLRHRSPRHQ", "length": 340 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BQ38-1", "protein_name": "Solute carrier family 35 member E4", "gene_name": "SLC35E4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCRCPPDHHDGRMTSAEAVEVAGGARWAGSAEWPPGTPQALRRPGRARVAVAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLAAALACHRGARRPLPGQTRRQVLLLSLTFGASMACGNVGLSAVPLDLAQLATTTTPLITLALSALLLGRRHHPLQFAAMGPLCLGAACSLAGELRTPPAGCGFLLAATCLRGLKSIQQSALLQEEQLDAVTLLYATSLPSFCLLAGAALVLEAGVAPPPVPTDCHLWACVLLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLVLSRLLFGSRLSTLSYVGVALTLSGMFLYHNCEFVASWAARRGFRWRDQPGKGL", "length": 350 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54KI9-1", "protein_name": "Sugar phosphate transporter domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIISNINNIDNNHLAGGALALWFILNISTLILNKYIYSSLYFYYPITLTAIHMFVCWIGSVAVLRVYKLIPLITVQWSGKQFINIMILSILFCSNIVFGNVSLRWVPVSFMQTVKSSVPLFTVILTTLFFSNIGGKKTTFTRGTYLSMIPIVGGVCVASLSEVNFNQAGFIAALASSILSAVFAIVSGLILTQQMNAVNLLYYMSPISCCLLFPLSAFMEWNAIANEWPLYGESKPIVILLLSGLIAFLLNTFTFLVIKLTSPLTYTVSGNLKVVLSISISILVFKNETNFFNVLGCAIAIMGVVCYSNIKYEESKAKLEQQQQQSLKQLESIYEEKLDKESLLSK", "length": 348 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5RKL7-1", "protein_name": "Solute carrier family 35 member E4", "gene_name": "Slc35e4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCRCPLEHHEVRMTSAEAIAVAGSAQEHGRPKWPPDKPQVLGQPALARVVVAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLAAAVACHWGAQRPVPHSIHRRVLLLSLTFGTSMACGNVGLSTVPLDLAQLATTTTPLFTLALSALLLGRRHHPLQFAAMGPLCLGAACSLAGELRAPPAGCGFLLVATCLRGFKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLEAGAAPPLPPTDSRLWACVLLSCFLSVVYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSHLSALSYVGIALTLSGMFLYHNCESVASWATRRGLWNRDQPGKGL", "length": 350 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XF09-1", "protein_name": "Probable sugar phosphate/phosphate translocator At3g11320", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKIAANGRFFTIGLVASWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLLSYVAIAWMKMVPMQTIRSRVQFLKIAALSLVFCVSVVFGNISLRFLPVSFNQAIGATTPFFTAVFAYLITFKREAWLTYFTLVPVVTGVVIASGSEPSFHLFGFIMCIAATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVFLLPATLIMEKNVVGITIALARDDFRIVWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYSLTVCGVILYSEAKKRSK", "length": 308 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6ICL7-1", "protein_name": "Solute carrier family 35 member E4", "gene_name": "SLC35E4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCRCPPEHHDGRMTSAEVGAAAGGAQAAGPPEWPPGSPQALRQPGRARVAMAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLVAALACHRGARRPMPGGTRCRVLLLSLTFGTSMACGNVGLRAVPLDLAQLVTTTTPLFTLALSALLLGRRHHPLQLAAMGPLCLGAACSLAGEFRTPPTGCGFLLAATCLRGLKSVQQSALLQEERLDAVTLLYATSLPSFCLLAGAALVLEAGVAPPPTAGDSRLWACILLSCLLSVLYNLASFSLLALTSALTVHVLGNLTVVGNLILSRLLFGSRLSALSYVGIALTLSGMFLYHNCEFVASWAARRGLWRRDQPSKGL", "length": 350 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K3D6-1", "protein_name": "Solute carrier family 35 member E4", "gene_name": "Slc35e4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCRCPLEHHEGMMTSAEAVAVAGSAQEHGRPKWPPDKPQVLGQPAPARVVVAALVWLLAGASMSSLNKWIFTVHGFGRPLLLSALHMLAAALACHWGAQRPVPHSIHRRVLLLSLTFGTSMACGNVGLSTVPLDLAQLATTTTPLFTMALSALLLGRRHHPLQFAAMGPLCLGAACSLAGELRAPPAGCGFLLVATCLRGFKSVQQSGALLQEERLDTVTLLYATSLPSFCLLASAALVLEAGTAPPLPPTDSRLWACVLLSCFLSVVYNLASFSLLALTSALTVHVLGNLMVVGNLILSRLLFGSHLSALSYLGITLTLSGMFLYHNCELVASWATRWGLWNRDQPGKGL", "length": 351 }, "evidence": [ { "id": "F1RPE3", "url": "https://omabrowser.org/oma/group/F1RPE3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "antiporter activity", "id": "GO:0015297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015297", "evidence": [ { "database": "UniProtKB", "id": "F1RPE3", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPE3" }, { "id": "PF03151", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03151" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sugar phosphate transporter", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 325, "start_aa": "Arg", "end_aa": "Tyr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 250 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 289, "end_pos": 291 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPF5-1", "uniprot_ac": "F1RPF5", "uniprot_id": "F1RPF5_PIG", "mass": { "chemical_mass": 37664.0, "monoisotopic_mass": 37664.0 }, "refseq": { "ac": "XP_013841710", "name": "putative P2Y purinoceptor 10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841710" }, "gene_names": [ { "name": "P2RY10", "type": "recommended", "evidence": [ { "id": "F1RPF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPF5" } ] }, { "name": "P2RY10", "type": "synonym", "evidence": [ { "id": "XP_013841710", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841710" } ] }, { "name": "P2Y10", "type": "synonym", "evidence": [ { "id": "XP_013841710", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841710" } ] } ], "protein_names": [ { "name": "Putative P2Y purinoceptor 10", "type": "recommended", "evidence": [ { "id": "F1RPF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPF5/entry#names_and_taxonomy" } ] }, { "name": "putative P2Y purinoceptor 10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013841710", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841710" } ] } ], "function": [ { "annotation": "Putative receptor for purines coupled to G-proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1RPF5", "url": "https://www.uniprot.org/uniprotkb/F1RPF5#function" }, { "database": "UniProtKB", "id": "ARBA00056731", "url": "https://www.uniprot.org/uniprotkb/ARBA00056731#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPF5", "url": "https://www.uniprot.org/uniprotkb/F1RPF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "P2RY10", "url": "https://www.uniprot.org/uniprotkb/F1RPF5", "locus": { "chromosome": "X", "start_pos": 63130495, "end_pos": 63112579, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012446", "url": "https://www.ensembl.org/id/ENSSSCG00000012446" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157702", "url": "https://www.ncbi.nlm.nih.gov/gene/100157702", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KTESCFA", "url": "https://omabrowser.org/oma/group/KTESCFA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RPF5", "url": "https://www.orthodb.org/?gene=F1RPF5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24232:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24232:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-417957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-417957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013841710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841710", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RPF5", "url": "https://www.uniprot.org/uniprotkb/F1RPF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPF5-1", "url": "https://www.uniprot.org/uniprotkb/F1RPF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSNSTSNAETHCNVNNLTFHYPLYATTYILIFIPGLLANSAALWVLCRFISRKNKAIIFMINLSVADLAHVLSLPLRIYYYISQHWPFQRALCLLCFYLKYLNMYASICFLTCISLQRCFFLLKPFRARDWKRRYDVWISAAIWVIVGTACLPFPILRSTDLANKTESCFADLGYRKMNAVALVGMITAAELAGFVIPVVIIAWCTWKTTTSLRQPPVAFQRISERQKALRMVFMCAAVFFICFTPYHINFIFYTMVKETIISSCPIVQSTLYFHPFCLCLASLCCLLDPILYYFMASEFRDQLSRHGSSVTRSRLMSRESGSSMIG", "length": 328, "header": "tr|F1RPF5-1|F1RPF5_PIG Isoform 1 of Putative P2Y purinoceptor 10 OS=Sus scrofa OX=9823 GN=P2RY10 PE=4 SV=3 CANONICAL=F1RPF5-1" }, "isoforms": [ { "isoform_ac": "F1RPF5-1", "url": "https://www.uniprot.org/uniprotkb/F1RPF5/entry", "sequence": { "sequence": "MDSNSTSNAETHCNVNNLTFHYPLYATTYILIFIPGLLANSAALWVLCRFISRKNKAIIFMINLSVADLAHVLSLPLRIYYYISQHWPFQRALCLLCFYLKYLNMYASICFLTCISLQRCFFLLKPFRARDWKRRYDVWISAAIWVIVGTACLPFPILRSTDLANKTESCFADLGYRKMNAVALVGMITAAELAGFVIPVVIIAWCTWKTTTSLRQPPVAFQRISERQKALRMVFMCAAVFFICFTPYHINFIFYTMVKETIISSCPIVQSTLYFHPFCLCLASLCCLLDPILYYFMASEFRDQLSRHGSSVTRSRLMSRESGSSMIG", "length": 328, "header": "tr|F1RPF5-1|F1RPF5_PIG Isoform 1 of Putative P2Y purinoceptor 10 OS=Sus scrofa OX=9823 GN=P2RY10 PE=4 SV=3 CANONICAL=F1RPF5-1" }, "locus": { "chromosome": "X", "start_pos": 63127721, "end_pos": 63126738, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013612.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013612.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013245.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013245.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPF5", "url": "https://www.uniprot.org/uniprotkb/F1RPF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" }, { "id": "R-SSC-417957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-417957", "resource": "Reactome", "description": "P2Y receptors" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HWB4-1", "protein_name": "Putative P2Y purinoceptor 10", "gene_name": "LOC100757805", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGSNSTSTAENNCNVTHLTFQYSLYATTYIFIFIPGLLANSAALWVLCRFISKKNKAIIFMINLSVADLAHVLSLPLRIYYYINRNWPFQKALCLLCFYLKYLNMYASICFLACISFQRCLFLLKPFKARNWKRRYDVAISAAIWVIVGTACLAFPILRSAGLANNTESCFADLGYKQMDTVDMVTMVTVAELSGFVIPVIIIACCTWKTTISLKQPPIAFQGISERKKALRMVFMCAAVFIICFTPYHINFIFYTMVKESIITSCPIVKSTLYFHPFCLCLASICCLLDPILYYFMASEFRDQLSRHGSSVTRSRLMSKESGSSMVS", "length": 328 }, "evidence": [ { "id": "F1RPF5", "url": "https://omabrowser.org/oma/group/F1RPF5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3X6Q0-1", "protein_name": "Putative P2Y purinoceptor 10", "gene_name": "P2RY10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSNSTSDAETICNETYLTFHYPLYATTYILIFIPGLLANSAALWVLCRFISKKNKAIIFMINLSVADLAHVLSLPFRIYYYISHHWPFQRIPCLLCFYLKYLNMYASICFLTCISLQRCFFLLKPFRARDWKRRYDVGISAAIWVIVGTACLPFPIMRSTDLANNTDSCFADLGYRKMNAVALVGMITAAELAGFVIPVVIIAWCTWKMTISLRQPPVAFQGISEKQKALRMVYMCAAVFFICFTPYHINFIFYTMVKEAIISSCPIVQSTQYFHPFCLCLASLCCLLDPILYYFMASEFRDQLSRHGSSVTRSRLMSRESGSSMIG", "length": 328 }, "evidence": [ { "id": "F1RPF5", "url": "https://omabrowser.org/oma/group/F1RPF5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O00398-1", "protein_name": "Putative P2Y purinoceptor 10", "gene_name": "P2RY10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPJ7-1", "uniprot_ac": "F1RPJ7", "uniprot_id": "F1RPJ7_PIG", "mass": { "chemical_mass": 33498.0, "monoisotopic_mass": 33498.0 }, "refseq": {}, "gene_names": [ { "name": "UPRT", "type": "recommended", "evidence": [ { "id": "F1RPJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ] } ], "protein_names": [ { "name": "Uracil phosphoribosyltransferase homolog", "type": "recommended", "evidence": [ { "id": "F1RPJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UPRT", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7", "locus": { "chromosome": "X", "start_pos": 60451480, "end_pos": 60426975, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012425", "url": "https://www.ensembl.org/id/ENSSSCG00000012425" } ] } } ], "crossref": [ { "id": "F1RPJ7", "url": "https://alphafold.ebi.ac.uk/entry/F1RPJ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012425", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012425", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06223", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06223", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100151798", "url": "https://www.ncbi.nlm.nih.gov/gene/100151798", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NLFCTPM", "url": "https://omabrowser.org/oma/group/NLFCTPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PF14681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ANK1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATELRCPDSMPCHNQQVNSASTPSLEPQQPGDLMPDHAGANSDSTAKQTLLSVHAHSIVTAERDPKACGSASFNSESNGGNYDASASDSLLGDCELFRQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 304, "header": "tr|F1RPJ7-1|F1RPJ7_PIG Isoform 1 of Uracil phosphoribosyltransferase homolog OS=Sus scrofa OX=9823 GN=UPRT PE=1 SV=1 CANONICAL=F1RPJ7-1" }, "isoforms": [ { "isoform_ac": "A0A287ANK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANK1/entry", "sequence": { "sequence": "MATELRCPDSMPCHNQQVNSASTPSLEPQQPGDLMPDHAGANSDSTAKQTLLSVHAHSIVTAERDPKACGSASFNSESNGGNYDASASDSLLGDCELFRQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 283, "header": "tr|A0A287ANK1-1|A0A287ANK1_PIG Computationally mapped isoform of Uracil phosphoribosyltransferase homolog OS=Sus scrofa OX=9823 GN=UPRT PE=1 SV=1 CANONICAL=F1RPJ7-1" }, "locus": { "chromosome": "X", "start_pos": 60447066, "end_pos": 60427142, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055659.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055659.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045506.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045506.1" } ] } }, { "isoform_ac": "F1RPJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7/entry", "sequence": { "sequence": "MATELRCPDSMPCHNQQVNSASTPSLEPQQPGDLMPDHAGANSDSTAKQTLLSVHAHSIVTAERDPKACGSASFNSESNGGNYDASASDSLLGDCELFRQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 304, "header": "tr|F1RPJ7-1|F1RPJ7_PIG Isoform 1 of Uracil phosphoribosyltransferase homolog OS=Sus scrofa OX=9823 GN=UPRT PE=1 SV=1 CANONICAL=F1RPJ7-1" }, "locus": { "chromosome": "X", "start_pos": 60447066, "end_pos": 60427142, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013586.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013586.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013221.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013221.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 23, "start_aa": "Thr", "end_pos": 23, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr23", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6G3Q5-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "Uprt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATELQRPDSMPCHNRQVNSTSSPSPERLLAEDPVLDHAEENNAAMAKLTLLPGHAHSSVLSERDSPACCSTNLHCENHSDSSDSGNYEAPVGDSLLGDCELYPQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGHKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIHRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 309 }, "evidence": [ { "id": "F1RPJ7", "url": "https://omabrowser.org/oma/group/F1RPJ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YKU7-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "UPRT", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "AWRPRSARGEGAPAHGGDAVPQPAARRGRRPAAPGRADGAGGRLLPADPLRRALRGQQQRQPQPGQQQRQQRGGGGPQPRGGGLRVAARSAAEAAAHERSDPGAADHHQGQIRLVVEEGLNQLPYTECTVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 277 }, "evidence": [ { "id": "F1RPJ7", "url": "https://omabrowser.org/oma/group/F1RPJ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B1AVZ0-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "Uprt", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASELQRPDSMPCHNRQVNSTSSPSPEHLLAEDRVLDHAEENNAAMAKLTLLPGHAHSSVLSERDSPACCSTNLHSENHSDSSDSGNYDAPVGGDSLLGDCELSRQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGHKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIHRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 310 }, "evidence": [ { "id": "F1RPJ7", "url": "https://omabrowser.org/oma/group/F1RPJ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1N6Q4-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "UPRT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATELRCPDSMPCHNQQVNSASTQNPEPQQAGDLILAHAGGNSDSAATLTLLSGHAHSSVPAELDPQASGGATFNSENNGGTGNYDAPASDSLLGDCEISRQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYEECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 306 }, "evidence": [ { "id": "F1RPJ7", "url": "https://omabrowser.org/oma/group/F1RPJ7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M9PHI7-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "kri", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRTGSPSSSGSQSEEGSSSSDHQQPQQEAQEQEQQLHTPTHAHAAVPAATSEEILAEYGSNLKLLECNSQVAELLTILRDKNTTRSDFKFYADRLIRLVIEESLNQLPYTHCDVETPTGAIYEGLKYRSGNCGVSIIRSGEAMEQGLRDCCRSIRIGKILVESDANTHEARVVYARFPDDIGSRQVLLMYPIMSTGNTVLQAVNVLREHGVPESCIILSNLFCTPIAARTVVNAFPKLKILTSELHPVAPNHFGQKYFDCI", "length": 261 }, "evidence": [ { "id": "F1RPJ7", "url": "https://omabrowser.org/oma/group/F1RPJ7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q96BW1-1", "protein_name": "Uracil phosphoribosyltransferase homolog", "gene_name": "UPRT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATELQCPDSMPCHNQQVNSASTPSPEQLRPGDLILDHAGGNRASRAKVILLTGYAHSSLPAELDSGACGGSSLNSEGNSGSGDSSSYDAPAGNSFLEDCELSRQIGAQLKLLPMNDQIRELQTIIRDKTASRGDFMFSADRLIRLVVEEGLNQLPYKECMVTTPTGYKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEETQRAKVYYAKFPPDIYRRKVLLMYPILSTGNTVIEAVKVLIEHGVQPSVIILLSLFSTPHGAKSIIQEFPEITILTTEVHPVAPTHFGQKYFGTD", "length": 309 }, "evidence": [ { "id": "F1RPJ7", "url": "https://omabrowser.org/oma/group/F1RPJ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ribosylnicotinamide kinase activity", "id": "GO:0050262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050262", "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "pmid": "" }, { "name": "nicotinate riboside kinase activity", "id": "GO:0061769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061769", "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RPJ7", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RPJ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 304, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RPJ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RPJ7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPJ7" }, { "id": "PF14681", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14681" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphoribosyltransferase", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 289, "start_aa": "Asn", "end_aa": "His", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 23 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { 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70045.0 }, "refseq": { "ac": "XP_013840676", "name": "methyl-CpG-binding domain protein 1 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840676" }, "gene_names": [ { "name": "MBD1", "type": "recommended", "evidence": [ { "id": "F1RPP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ] }, { "name": "MBD1", "type": "synonym", "evidence": [ { "id": "XP_013840676", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840676" } ] } ], "protein_names": [ { "name": "Methyl-CpG-binding domain protein 1", "type": "recommended", "evidence": [ { "id": "F1RPP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPP4/entry#names_and_taxonomy" } ] }, { "name": "Methyl-CpG-binding protein MBD1", "type": "synonym", "evidence": [ { "id": "F1RPP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPP4/entry#names_and_taxonomy" } ] }, { "name": "methyl-CpG-binding domain protein 1 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_013840676", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840676" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MBD1", "url": "https://www.uniprot.org/uniprotkb/F1RPP4", "locus": { "chromosome": "1", "start_pos": 99900801, "end_pos": 99917323, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004516", "url": "https://www.ensembl.org/id/ENSSSCG00000004516" } ] } } ], "crossref": [ { "id": "F1RPP4", "url": "https://alphafold.ebi.ac.uk/entry/F1RPP4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004516", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004516", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01396", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01396", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156150", "url": "https://www.ncbi.nlm.nih.gov/gene/100156150", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RPP4", "url": "https://www.orthodb.org/?gene=F1RPP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12396", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12396", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12396:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12396:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3899300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013840676", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840676", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ABI3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIG7", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ63", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ63-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPP4-1", "url": "https://www.uniprot.org/uniprotkb/F1RPP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLSLFDFKQGILCYPAPKAHSLAVPSRKRKKPSKPAKARKRQVGPQKSEVRKETPRDETKADANPAPASLPAPGCCENCGISFSGDGTRRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECTACQVTEDCGACSTCLLQLPHDVASGLFCKCEQRRCLRIVERSRGCGVCRGCQTREDCGRCRVCLRPPRPGLRRQWKCVQRRCLRHLAHRLRRHHQRCQRRPSLAVAPPAGKHGRRRGGCDSKVAPRRRSRAQPLPPLLPSQPPESPELHPRTLAPLPRAEFIYYCVDEDELQPYTNRRQNRKCGACTACLRRMDCGHCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWAGSEDGSEPPPPYPRRKRPCSTRRPRLGQTLKPPLATPTARRDHTQTSMKQETGGGFVLPPPGTDLVFLREGASSPVQVPGPAPASTEALLQEAQCPGLSWVVALPQVKQEKADAQEDWTPGTAILTSPVLLPGCPSKTVDPGLPAVKQEPPDPEEDKEENKDDSASDLAPEEEAGGAGTPVITEIFSLGGTRLRDTAVWLPRSKDLKKPGARKQ", "length": 630, "header": "tr|F1RPP4-1|F1RPP4_PIG Isoform 1 of Methyl-CpG-binding domain protein 1 OS=Sus scrofa OX=9823 GN=MBD1 PE=4 SV=5 CANONICAL=F1RPP4-1" }, "isoforms": [ { "isoform_ac": "A0A287ABI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABI3/entry", "sequence": { "sequence": "MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLSLFDFKQGILCYPAPKAHSLAVPSRKRKKPSKPAKARKRQVGPQKSEVRKETPRDETKADANPAPASLPAPGCCENCGISFSGDGTRRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECTACQVTEDCGACSTCLLQLPHDVASGLFCKCEQRRCLRIVERSRGCGVCRGCQTREDCGRCRVCLRPPRPGLRRQWKCVQRRCLRGKHGRRRGGCDSKVAPRRRSRAQPLPPLLPSQPPESPELHPRTLAPLPRAEFIYYCVDEDELKRLLPSVWAGSEDGSEPPPPYPRRKRPCSTRRPRLGQTLKPPLATPTARRDHTQTSMKQETGGGFVLPPPGTDLVFLREGASSPVQVPGPAPASTEALLQEAQCPGLSWVVALPQVKQEKADAQEDWTPGTAILTSPVLLPGCPSKTVDPGLPAVKQEPPDPEEDKEENKDDSASDLAPEEEAGGAGTPVITEIFSLGGTRLRDTAVWLPRSKDLKKPGARKQ", "length": 549, "header": "tr|A0A287ABI3-1|A0A287ABI3_PIG Computationally mapped isoform of Methyl-CpG-binding domain protein 1 OS=Sus scrofa OX=9823 GN=MBD1 PE=4 SV=2 CANONICAL=F1RPP4-1" }, "locus": { "chromosome": "1", "start_pos": 99915868, "end_pos": 99904743, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041102.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041102.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041254.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041254.2" } ] } }, { "isoform_ac": "A0A287AIG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIG7/entry", "sequence": { "sequence": "MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLSLFDFKQGILCYPAPKAHSLAVPSRKRKKPSKPAKARKRQVGPQKSEVRKETPRDETKADANPAPASLPAPGCCENCGISFSGDGTRRQRLKTLCKDCRAQRIAFNREQRMFKSRGCGVCRGCQTREDCGRCRVCLRPPRPGLRRQWKCVQRRCLRGKHGRRRGGCDSKVAPRRRSRAQPLPPLLPSQPPESPELHPRTLAPLPRAEFIYYCVDEDELQPYTNRRQNRKCGACTACLRRMDCGHCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWAGSEDGSEPPPPYPRRKRPCSTRRPRLGQTLKPPLATPTARRDHTQTSMKQETGGGFVLPPPGTDLVFLREGASSPVQVPGPAPASTEALLQEAQCPGLSWVVALPQVKQEKADAQEDWTPGTAILTSPVLLPGCPSKTVDPGLPAVKQEPPDPEEDKEENKDDSASDLAPEEEAGGAGTPVITEIFSLGGTRLRDTAVWLPRSKDLKKPGARKQ", "length": 556, "header": "tr|A0A287AIG7-1|A0A287AIG7_PIG Computationally mapped isoform of Methyl-CpG-binding domain protein 1 OS=Sus scrofa OX=9823 GN=MBD1 PE=4 SV=2 CANONICAL=F1RPP4-1" }, "locus": { "chromosome": "1", "start_pos": 99915868, "end_pos": 99904743, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037626.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037626.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043813.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043813.2" } ] } }, { "isoform_ac": "A0A287BQ63-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ63/entry", "sequence": { "sequence": "MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLSLFDFKQGILCYPAPKAHSLAVPSRKRKKPSKPAKARKRQVGPQKSEVRKETPRDETKADANPAPASLPAPGCCENCGISFSGDGTRRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECTACQVTEDCGACSTCLLQLPHDVASGLFCKCEQRRCLRIVERSRGCGVCRGCQTREDCGRCRVCLRPPRPGLRRQWKCVQRRCLRGKHGRRRGGCDSKVAPRRRSRAQPLPPLLPSQPPESPELQPYTNRRQNRKCGACTACLRRMDCGHCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWAGSEDGSEPPPPYPRRKRPCSTRRPRLGQTLKPPLATPTARRDHTQTSMKQETGGGFVLPPPGTDLVFLREGASSPVQVPGPAPASTEALLQTVDPGLPAVKQEPPDPEEDKEENKDDSASDLAPEEEAGGAGTPVITEIFSLGGTRLRDTAVWLPSLQDRQSRREEGCKVWETKDTLAPMSTSWNPRGWPGTHVSLSPPPTSMIWVSCRRSWCPSSQS", "length": 586, "header": "tr|A0A287BQ63-1|A0A287BQ63_PIG Computationally mapped isoform of Methyl-CpG-binding domain protein 1 OS=Sus scrofa OX=9823 GN=MBD1 PE=4 SV=3 CANONICAL=F1RPP4-1" }, "locus": { "chromosome": "1", "start_pos": 99915868, "end_pos": 99902819, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053129.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053129.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058248.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058248.3" } ] } }, { "isoform_ac": "F1RPP4-1", "url": "https://www.uniprot.org/uniprotkb/F1RPP4/entry", "sequence": { "sequence": "MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLSLFDFKQGILCYPAPKAHSLAVPSRKRKKPSKPAKARKRQVGPQKSEVRKETPRDETKADANPAPASLPAPGCCENCGISFSGDGTRRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECTACQVTEDCGACSTCLLQLPHDVASGLFCKCEQRRCLRIVERSRGCGVCRGCQTREDCGRCRVCLRPPRPGLRRQWKCVQRRCLRHLAHRLRRHHQRCQRRPSLAVAPPAGKHGRRRGGCDSKVAPRRRSRAQPLPPLLPSQPPESPELHPRTLAPLPRAEFIYYCVDEDELQPYTNRRQNRKCGACTACLRRMDCGHCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWAGSEDGSEPPPPYPRRKRPCSTRRPRLGQTLKPPLATPTARRDHTQTSMKQETGGGFVLPPPGTDLVFLREGASSPVQVPGPAPASTEALLQEAQCPGLSWVVALPQVKQEKADAQEDWTPGTAILTSPVLLPGCPSKTVDPGLPAVKQEPPDPEEDKEENKDDSASDLAPEEEAGGAGTPVITEIFSLGGTRLRDTAVWLPRSKDLKKPGARKQ", "length": 630, "header": "tr|F1RPP4-1|F1RPP4_PIG Isoform 1 of Methyl-CpG-binding domain protein 1 OS=Sus scrofa OX=9823 GN=MBD1 PE=4 SV=5 CANONICAL=F1RPP4-1" }, "locus": { "chromosome": "1", "start_pos": 99915868, "end_pos": 99904743, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004988.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004988.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004871.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004871.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 452, "start_aa": "Thr", "end_pos": 452, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr452", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3899300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "resource": "Reactome", "description": "SUMOylation of transcription cofactors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "DNA methylation-dependent constitutive heterochromatin formation", "id": "GO:0006346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006346", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "nuclear matrix", "id": "GO:0016363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016363", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "methyl-CpG binding", "id": "GO:0008327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008327", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "unmethylated CpG binding", "id": "GO:0045322", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045322", "evidence": [ { "database": "UniProtKB", "id": "F1RPP4", "url": "https://www.uniprot.org/uniprotkb/F1RPP4" } ], "pmid": "" }, { "name": "double-stranded methylated DNA binding", "id": 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cap-binding complex (CBC), that takes place during or right after mRNA export via the nuclear pore complex (NPC). Acts via its interaction with the NCBP1/CBP80 component of the CBC complex and recruits the 40S small subunit of the ribosome via eIF3. In contrast, it is not involved in steady state translation, that takes place when the CBC complex is replaced by cytoplasmic cap-binding protein eIF4E. Also required for nonsense-mediated mRNA decay (NMD), the pioneer round of mRNA translation mediated by the cap-binding complex playing a central role in nonsense-mediated mRNA decay (NMD).", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2#function" }, { "database": "UniProtKB", "id": "ARBA00055030", "url": "https://www.uniprot.org/uniprotkb/ARBA00055030#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CTIF", "url": "https://www.uniprot.org/uniprotkb/F1RPR2", "locus": { "chromosome": "1", "start_pos": 98456433, "end_pos": 98133342, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004506", "url": "https://www.ensembl.org/id/ENSSSCG00000004506" } ] } } ], "crossref": [ { "id": "F1RPR2", "url": "https://alphafold.ebi.ac.uk/entry/F1RPR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004506", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004506", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152137", "url": "https://www.ncbi.nlm.nih.gov/gene/100152137", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RPR2", "url": "https://www.orthodb.org/?gene=F1RPR2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23254:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23254:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013848303", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848303", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480Y7C8", "url": "https://www.uniprot.org/uniprotkb/A0A480Y7C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480Y7C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Y7C8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPR2-1", "url": "https://www.uniprot.org/uniprotkb/F1RPR2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESEKTQSHISQWTADCSEQLDRSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKLDFTQFHRKLRHTHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEIAHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSMPHPSGRSTHHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTMESPKLEDTLGDAGHSSLEPPRSPDALAPAVSERLPLLQPGGPEVETKRKDSIIPERGGERPKITLLQSSKDRLRRRLKEKVPDEVTVETTNPQQNKMDKLIEILNSMRNNSSDVDAKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMAELLASARDKMLCPSESMLTRSLLLEVIELHANNWNPLTPPITQYYNRTIQKLTA", "length": 594, "header": "tr|F1RPR2-1|F1RPR2_PIG Isoform 1 of CBP80/20-dependent translation initiation factor OS=Sus scrofa OX=9823 GN=CTIF PE=1 SV=5 CANONICAL=F1RPR2-1" }, "isoforms": [ { "isoform_ac": "A0A480Y7C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A480Y7C8/entry", "sequence": { "sequence": "MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESEKTQSHISQWTADCSEQLDRSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKLDFTQFHRKLRHTHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEIAHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSMPHPSGRSTHHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTMESPKLEDTLGDAGHSSLEPPRSPDALAPAVSERLPLLQPGGPEVETKRKDSIIPERGGERPKITLLQSSKDRLRRRLKEKDEVTVETTNPQQNKMDKLIEILNSMRNNSSDVDAKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQLLQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMAELLASARDKMLCPSESMLTRSLLLEVIELHANNWNPLTPPITQYYNRTIQKLTA", "length": 540, "header": "tr|A0A480Y7C8-1|A0A480Y7C8_PIG Computationally mapped isoform of Cap binding complex dependent translation initiation factor OS=Sus scrofa OX=9823 GN=CTIF PE=1 SV=1 CANONICAL=F1RPR2-1" }, "locus": { "chromosome": "1", "start_pos": 98451366, "end_pos": 98220135, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064712.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064712.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059437.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059437.2" } ] } }, { "isoform_ac": "F1RPR2-1", "url": "https://www.uniprot.org/uniprotkb/F1RPR2/entry", "sequence": { "sequence": "MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLADKTEGDGESEKTQSHISQWTADCSEQLDRSCSFSRGRAPPQQNGSKDNSLDMLGTDIWAANTFDSFSGATWDLQPEKLDFTQFHRKLRHTHIDREGCGKGKLEDGDGINLNDIEKVLPAWQGYHPMPHEVEIAHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAKHNRDHQKSYQGGSMPHPSGRSTHHGYSQNRRWHHGNMKHPPGDKGEAGAHRNAKETMTMESPKLEDTLGDAGHSSLEPPRSPDALAPAVSERLPLLQPGGPEVETKRKDSIIPERGGERPKITLLQSSKDRLRRRLKEKVPDEVTVETTNPQQNKMDKLIEILNSMRNNSSDVDAKLTTFMEEAQNSTNSEEMLGEIVRTIYQKAVSDRSFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCEVFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLPEMMAELLASARDKMLCPSESMLTRSLLLEVIELHANNWNPLTPPITQYYNRTIQKLTA", "length": 594, "header": "tr|F1RPR2-1|F1RPR2_PIG Isoform 1 of CBP80/20-dependent translation initiation factor OS=Sus scrofa OX=9823 GN=CTIF PE=1 SV=5 CANONICAL=F1RPR2-1" }, "locus": { "chromosome": "1", "start_pos": 98451366, "end_pos": 98220135, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004978.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004978.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004861.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004861.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" }, { "name": "translation activator activity", "id": "GO:0008494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008494", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay", "id": "GO:0000184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000184", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" }, { "name": "regulation of translational initiation", "id": "GO:0006446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006446", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "F1RPR2", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RPR2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 594, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RPR2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RPR2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPR2" }, { "id": "SM00543", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00543" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MIF4G", "eco_id": "ECO_0000259", "start_pos": 372, "end_pos": 573, "start_aa": "Ile", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 380, "end_pos": 382 }, { "start_pos": 381, "end_pos": 383 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 586, "end_pos": 588 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPS2-1", "uniprot_ac": "F1RPS2", "uniprot_id": "F1RPS2_PIG", "mass": { "chemical_mass": 240581.0, "monoisotopic_mass": 240581.0 }, "refseq": {}, "gene_names": [ { "name": "BAZ2B", "type": "recommended", "evidence": [ { "id": "F1RPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" } ] } ], "protein_names": [ { "name": "Bromodomain adjacent to zinc finger domain protein 2B", "type": "recommended", "evidence": [ { "id": "F1RPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPS2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPS2", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BAZ2B", "url": "https://www.uniprot.org/uniprotkb/F1RPS2", "locus": { "chromosome": "15", "start_pos": 66254948, "end_pos": 66571077, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015882", "url": "https://www.ensembl.org/id/ENSSSCG00000015882" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015882", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015882", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01397", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01397", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05503", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05503", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15630", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15630", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45915", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45915", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45915:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45915:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15613", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15613", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BKD3", "url": "https://www.uniprot.org/uniprotkb/A0A287BKD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPS2", "url": "https://www.uniprot.org/uniprotkb/F1RPS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPS2-1", "url": "https://www.uniprot.org/uniprotkb/F1RPS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESGERLPSSTTSSTTPTSSSIPSVASSVSKGGLSTGAASLSSTINPCGHLFRAAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFGGLGTLGTPTALAAHPQLASFPGAEWWRTADVHSRAGATFFPPLLGIPPLFAPPAQNHDSSFHSRTSGKSNRNGPEKGVNGSINGNSTSSVSCINTSVLSTTASSSVGQTKSISSGGGNRKGNQEQNKTQPLDARAEKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDEEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKAEGQKATEKAQEKRIHQPLPLVSEPQTHSSFQSQQKQPQVLSQQLPFIFQSSQAKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKESYMKLIVPSPDVLKAGNKNTSEESSPLTSELRSKREQYKQTFPAQLKKQESSKSLKKVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQTKINENIATAGGTPFSSPVNLSTSGRRTPNQTTVIPSASPVPHSQGKEKAVNNNINIVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEDDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKSPSISLTAHSTPRNLHIAKAPGSAPAALCSESQSPAFLGTPSSTLTSSPHSGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNFSFSAKIRVGDFYEARDGPQGMQWCLLKEEDVIPRIRAMEGRRGRPPNPDRQRAREESRMRRRKGRPPNVGSAEFLDNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFMEAHCGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSSGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQADEEEEEEEDKEDKKGKKTEICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSMMFGQDRYRRRYWILPQCGGIFVEGMESGEGLEEIAKEREKLKKAESTPVKEEIFETSEDTLNCSNPDHCEQKEDPKEKDNTNLFLQKPGSFSKLSKLLEVAKMPPESDVMTSKPNSSANGCTLSYQNSGKHSLGSIQPTATQSNMEKTDSNNPFNTGSSAPGKFYSPLPNDQLLKTLTEKNRQWFSLLPRTPCDDTSLTHADMSTASLVTPQSQPPSKSPSPAPGPLLGSSSAQNPVGLNPFALSPLQMKSGVSMMGLQFCGWPTGVLTSNIPFTSPLPSLGTGLGLSEGNGNSFLTPNVASSKSESPVPQNEKPSSAQPAAVEVAKPVDYPSPKPIPEEMQFGWWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACIKNKDVAIIELNENEENQVTRDIVENWSVEDQAMETDLSILQQVEDLERRVASASLQVKGWMCPEPASEREDLVYFEHKSFSKLCKEHDGEFTGEEESSAHALERKSDNPLDIAVTRLADLERNIERRIEEDIAPGLRVWRRALSEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKVRKLNVKGKKTESKKGKKVTLTGDTEDEDSASTSSSLKRGIKDLKKRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHSMRKYFEKKWTDTFKVS", "length": 2167, "header": "tr|F1RPS2-1|F1RPS2_PIG Isoform 1 of Bromodomain adjacent to zinc finger domain protein 2B OS=Sus scrofa OX=9823 GN=BAZ2B PE=3 SV=4 CANONICAL=F1RPS2-1" }, "isoforms": [ { "isoform_ac": "A0A287BKD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKD3/entry", "sequence": { "sequence": "MESGERLPSSTTSSTTPTSSSIPSVASSVSKGGLSTGAASLSSTINPCGHLFRAAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFGGLGTLGTPTALAAHPQLASFPEWWRTADVHSRAGATFFPPLLGIPPLFAPPAQNHDSSFHSRTSGKSNRNGPEKGVNGSINGNSTSSVSCINTSVLSTTASSSVGQTKSISSGGGNRKGNQEQNKTQPLDARAEKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDEEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKAEGQKATEKAQEKRIHQPLPLVSEPQTHSSFQSQQKQPQVLSQQLPFIFQSSQAKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKESYMKLIVPSPDVLKAGNKNTSEESSPLTSELRSKREQYKQTFPAQLKKQESSKSLKKVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQTKINENIATAGGTPFSSPVNLSTSGRRTPNQTTVIPSASPVPHSQGKEKAVNNNINIVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEDDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKSPSISLTAHSTPRNLHIAKAPGSAPAALCSESQSPAFLGTPSSTLTSSPHSGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKGMQWCLLKEEDVIPRIRAMEGRRGRPPNPDRQRAREESRMRRRKGRPPNVGSAEFLDNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFMEAHCGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSSGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQADEEEEEEEDKEDKKGKKTEICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSMMFGQDRYRRRYWILPQCGGIFVEGMESGEGLEEIAKEREKLKKAESTPVKEEIFETSEDTLNCSNPDHCEQKEDPKEKDNTNLFLQKPGSFSKLSKLLEVAKMPPESDVMTSKPNSSANGCTLSYQNSGKHSLGSIQPTATQSNMEKTDSNNPFNTGSSAPGKFYSPLPNDQLLKTLTEKNRQWFSLLPRTPCDDTSLTHADMSTASLVTPQSQPPSKSPSPAPGPLLGSSSAQNPVGLNPFALSPLQMKSGVSMMGLQFCGWPTGVLTSNIPFTSPLPSLGTGLGLSEGNGNSFLTPNVASSKSESPVPQNEKPSSAQPAAVEVAKPVDYPSPKPIPEEMQFGWWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACIKNKDVAIIELNENEENQVTRDIVENWSVEDQAMETDLSILQQVEDLERRVASASLQVKGWMCPEPASEREDLVYFEHKSFSKLCKEHDGEFTGEEESSAHALERKSDNPLDIAVTRLADLERNIERRIEEDIAPGLRVWRRALSEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKVRKLNVKGKKTESKKGKKVTLTGDTEDEDSASTSSSLKRGIKDLKKRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHSMRKYFEKKWTDTFKVS", "length": 2131, "header": "tr|A0A287BKD3-1|A0A287BKD3_PIG Computationally mapped isoform of Bromodomain adjacent to zinc finger domain protein 2B OS=Sus scrofa OX=9823 GN=BAZ2B PE=3 SV=2 CANONICAL=F1RPS2-1" }, "locus": { "chromosome": "15", "start_pos": 66402360, "end_pos": 66256266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044120.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044120.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056972.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056972.2" } ] } }, { "isoform_ac": "F1RPS2-1", "url": "https://www.uniprot.org/uniprotkb/F1RPS2/entry", "sequence": { "sequence": "MESGERLPSSTTSSTTPTSSSIPSVASSVSKGGLSTGAASLSSTINPCGHLFRAAGDQPFNLSTVSSAFPMVSHPVFGLHSASSGHSEFGGLGTLGTPTALAAHPQLASFPGAEWWRTADVHSRAGATFFPPLLGIPPLFAPPAQNHDSSFHSRTSGKSNRNGPEKGVNGSINGNSTSSVSCINTSVLSTTASSSVGQTKSISSGGGNRKGNQEQNKTQPLDARAEKIKDKKPRKKAMESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDEEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISDPKAEGQKATEKAQEKRIHQPLPLVSEPQTHSSFQSQQKQPQVLSQQLPFIFQSSQAKEESVNKHTSVIQSTGLVSNVKPLSLVNQAKKESYMKLIVPSPDVLKAGNKNTSEESSPLTSELRSKREQYKQTFPAQLKKQESSKSLKKVIAALSNPKATSSSPAHPKQTLENNHPNPFLTNALLGNHQPNGVIQSVIQEAPLALTTKTKMQTKINENIATAGGTPFSSPVNLSTSGRRTPNQTTVIPSASPVPHSQGKEKAVNNNINIVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEDDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKSPSISLTAHSTPRNLHIAKAPGSAPAALCSESQSPAFLGTPSSTLTSSPHSGTSKRRRVTDERELRIPLEYGWQRETRIRNFGGRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNFSFSAKIRVGDFYEARDGPQGMQWCLLKEEDVIPRIRAMEGRRGRPPNPDRQRAREESRMRRRKGRPPNVGSAEFLDNTDAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFMEAHCGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSSGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQADEEEEEEEDKEDKKGKKTEICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSMMFGQDRYRRRYWILPQCGGIFVEGMESGEGLEEIAKEREKLKKAESTPVKEEIFETSEDTLNCSNPDHCEQKEDPKEKDNTNLFLQKPGSFSKLSKLLEVAKMPPESDVMTSKPNSSANGCTLSYQNSGKHSLGSIQPTATQSNMEKTDSNNPFNTGSSAPGKFYSPLPNDQLLKTLTEKNRQWFSLLPRTPCDDTSLTHADMSTASLVTPQSQPPSKSPSPAPGPLLGSSSAQNPVGLNPFALSPLQMKSGVSMMGLQFCGWPTGVLTSNIPFTSPLPSLGTGLGLSEGNGNSFLTPNVASSKSESPVPQNEKPSSAQPAAVEVAKPVDYPSPKPIPEEMQFGWWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACIKNKDVAIIELNENEENQVTRDIVENWSVEDQAMETDLSILQQVEDLERRVASASLQVKGWMCPEPASEREDLVYFEHKSFSKLCKEHDGEFTGEEESSAHALERKSDNPLDIAVTRLADLERNIERRIEEDIAPGLRVWRRALSEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASGQTLKVRKLNVKGKKTESKKGKKVTLTGDTEDEDSASTSSSLKRGIKDLKKRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHSMRKYFEKKWTDTFKVS", "length": 2167, "header": "tr|F1RPS2-1|F1RPS2_PIG Isoform 1 of Bromodomain adjacent to zinc finger domain protein 2B OS=Sus scrofa OX=9823 GN=BAZ2B PE=3 SV=4 CANONICAL=F1RPS2-1" }, "locus": { "chromosome": "15", "start_pos": 66402360, "end_pos": 66256266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017293.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017293.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016830.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016830.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1283, "start_aa": "Thr", "end_pos": 1283, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1283", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPS2", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RPS2", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RPS2", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RPS2", "url": 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 1435, "end_pos": 1437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1488, "end_pos": 1490, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1785, "end_pos": 1787, "annotation": "n_glycosylation_sequon" }, { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2040, "end_pos": 2042, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2044, "end_pos": 2046, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" }, { "start_pos": 671, "end_pos": 673, "annotation": "n_glycosylation_sequon" }, { "start_pos": 800, "end_pos": 802, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" }, { "id": "PS50014", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bromo", "eco_id": "ECO_0000259", "start_pos": 2076, "end_pos": 2146, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPS2" }, { "id": "PS50827", "database": "PROSITE", "url": 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"https://www.uniprot.org/uniprotkb/F1RPW6" } ] } ], "protein_names": [ { "name": "Secretoglobin family 1D member 1", "type": "synonym", "evidence": [ { "id": "F1RPW6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPW6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPW6", "url": "https://www.uniprot.org/uniprotkb/F1RPW6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCGB1D1", "url": "https://www.uniprot.org/uniprotkb/F1RPW6", "locus": { "chromosome": "2", "start_pos": 9387355, "end_pos": 9391370, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013068", "url": "https://www.ensembl.org/id/ENSSSCG00000013068" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013068", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013068", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00633", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00633", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR016126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KRCTDQM", "url": "https://omabrowser.org/oma/group/KRCTDQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11332", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11332", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11332:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11332:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01099", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01099", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RPW6", "url": "https://www.uniprot.org/uniprotkb/F1RPW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPW6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPW6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLSLMVLLVTLALCCYEAHGIVCRALVKEFSAFLWKPDEIYKPELELFGAPPEAVDAKMKVKQCANGISFKKKILLTKTLVEILVKKCGFEDVKTLFPDISLGLSASVFK", "length": 111, "header": "tr|F1RPW6-1|F1RPW6_PIG Isoform 1 of Secretoglobin family 1D member 1 OS=Sus scrofa OX=9823 GN=SCGB1D1 PE=3 SV=2 CANONICAL=F1RPW6-1" }, "isoforms": [ { "isoform_ac": "F1RPW6-1", "url": "https://www.uniprot.org/uniprotkb/F1RPW6/entry", "sequence": { "sequence": "MRLSLMVLLVTLALCCYEAHGIVCRALVKEFSAFLWKPDEIYKPELELFGAPPEAVDAKMKVKQCANGISFKKKILLTKTLVEILVKKCGFEDVKTLFPDISLGLSASVFK", "length": 111, "header": "tr|F1RPW6-1|F1RPW6_PIG Isoform 1 of Secretoglobin family 1D member 1 OS=Sus scrofa OX=9823 GN=SCGB1D1 PE=3 SV=2 CANONICAL=F1RPW6-1" }, "locus": { "chromosome": "2", "start_pos": 9391171, "end_pos": 9387549, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014284.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014284.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013898.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013898.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPW6", "url": "https://www.uniprot.org/uniprotkb/F1RPW6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A452DJD0-1", "protein_name": "Secretoglobin, family 1D, member 2", "gene_name": "SCGB1D", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLSVTALLVTLALCYYKANAIVCPTFAADLTEFFYFPDLLYRLSLAKYNAPPEAVAAKMEVKQCTDRFSVKNRLIITNILGKILLNCTVTDVKAVLNPSSA", "length": 102 }, "evidence": [ { "id": "F1RPW6", "url": "https://omabrowser.org/oma/group/F1RPW6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95969-1", "protein_name": "Secretoglobin family 1D member 2", "gene_name": "SCGB1D2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLSVCLLLVTLALCCYQANAEFCPALVSELLDFFFISEPLFKLSLAKFDAPPEAVAAKLGVKRCTDQMSLQKRSLIAEVLVKILKKCSV", "length": 90 }, "evidence": [ { "id": "F1RPW6", "url": "https://omabrowser.org/oma/group/F1RPW6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1RPW6", "url": "https://www.uniprot.org/uniprotkb/F1RPW6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPX2-1", "uniprot_ac": "F1RPX2", "uniprot_id": "F1RPX2_PIG", "mass": { "chemical_mass": 95569.0, "monoisotopic_mass": 95569.0 }, "refseq": { "ac": "XP_005660851", "name": "echinoderm microtubule-associated protein-like 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660851" }, "gene_names": [ { "name": "EML3", "type": "recommended", "evidence": [ { "id": "F1RPX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ] }, { "name": "EML3", "type": "synonym", "evidence": [ { "id": "XP_005660851", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660851" } ] } ], "protein_names": [ { "name": "Echinoderm microtubule-associated protein-like 3", "type": "recommended", "evidence": [ { "id": "F1RPX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPX2/entry#names_and_taxonomy" } ] }, { "name": "echinoderm microtubule-associated protein-like 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005660851", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660851" } ] } ], "function": [ { "annotation": "Regulates mitotic spindle assembly, microtubule (MT)-kinetochore attachment and chromosome separation via recruitment of HAUS augmin-like complex and TUBG1 to the existing MTs and promoting MT-based MT nucleation. Required for proper alignnment of chromosomes during metaphase.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYB1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYB1#function" }, { "database": "UniProtKB", "id": "ARBA00056928", "url": "https://www.uniprot.org/uniprotkb/ARBA00056928#function" }, { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EML3", "url": "https://www.uniprot.org/uniprotkb/F1RPX2", "locus": { "chromosome": "2", "start_pos": 9137653, "end_pos": 9127698, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013061", "url": "https://www.ensembl.org/id/ENSSSCG00000013061" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013061", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013061", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515768", "url": "https://www.ncbi.nlm.nih.gov/gene/100515768", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PNGREVC", "url": "https://omabrowser.org/oma/group/PNGREVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RPX2", "url": "https://www.orthodb.org/?gene=F1RPX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13720", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13720", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13720:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13720:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03451", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03451", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660851", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660851", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZYB1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYB1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6C1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPX2-1", "url": "https://www.uniprot.org/uniprotkb/F1RPX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGAGGPAEGPAQEALQSLSRRLQVQEKEMELVKAALAEALRLLRLQVPPSPLQDPGTPGPPRDSSPATPPGLPPTCNPSFVSRGTQTEVEVEMEPSPGPPGLSNGPPAPQGGSEEPSGTQSEGGGSSSSGTGSPGPPGILRLAQPPQRTDTPRRNSSSSSSPSERPRQKLSRKAASSANLLLRSGSTESRGGKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHVWDSETLQKLQEIGLGAFERGVGALAFSVADQGAFLCVVDDSNEHMLSVWDCSRGTKLAEIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWNGGAGVPGNGTLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSLSDSRTPGRGGAKETYGIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGPGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPFQNRFLTCGHDRQLCLWDGEAHALAWSLDLKETGLCADFHPSGAVVAVGLNTGRWLVLDTETREIVSDITDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSDGAKSSRFGRCVGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYDSRDREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSLVYGGHGSHVTSVRFTYDDSHLVSLGGKDASIFQWRVLGAGSAGQAPATPSRTPSLSPASSLDV", "length": 897, "header": "tr|F1RPX2-1|F1RPX2_PIG Isoform 1 of Echinoderm microtubule-associated protein-like 3 OS=Sus scrofa OX=9823 GN=EML3 PE=1 SV=3 CANONICAL=F1RPX2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZYB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYB1/entry", "sequence": { "sequence": "MDGAGGPAEGPAQEALQSLSRRLQVQEKEMELVKAALAEALRLLRLQVPPSPLQDPGTPGPPRDSSPATPPGLPPTCNPSFVSRGTQTEVEVEMEPSPGPPGLSNGPPAPQGGSEEPSGTQSEGGGSSSSGTGSPGPPGILRLAQPPQPPVLFSLPNSRGGKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHVWDSETLQKLQEIGLGAFERGVGALAFSVADQGAFLCVVDDSNEHMLSVWDCSRGTKLAEIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWNGGAGVPGNGTLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSLSDSRTPGRGGAKETYGIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGPGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPFQNRFLTCGHDRQLCLWDGEAHALAWSLDLKETGLCADFHPSGAVVAVGLNTGRWLVLDTETREIVSDITDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSDGAKSSRFGRCVGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYDSRDREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSLVYGGHGSHVTSVRFTYDDSHLVSLGGKDASIFQWRVLGAGSAGQAPATPSRTPSLSPASSLDV", "length": 865, "header": "tr|A0A286ZYB1-1|A0A286ZYB1_PIG Computationally mapped isoform of Echinoderm microtubule-associated protein-like 3 OS=Sus scrofa OX=9823 GN=EML3 PE=1 SV=2 CANONICAL=F1RPX2-1" }, "locus": { "chromosome": "2", "start_pos": 9137413, "end_pos": 9127991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048709.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048709.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036701.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036701.2" } ] } }, { "isoform_ac": "A0A5G2R6C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6C1/entry", "sequence": { "sequence": "MDGAGGPAEGPAQEALQSLSRRLQVQEKEMELVKAALAEALRLLRLQVPPSPLQDPGTPGPPRDSPATPPGLPPTCNPSFVSRGTQTEVEVEMEPSPGPPGLSNGPPAPQGGSEEPSGTQSEGGGSSSSGTGSPGPPGILRLAQPPQRTDTPRRNSSSSSSPSERPRQKLSRKAASSANLLLRSGSTESRGGKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHVWDSETLQKLQEIGLGAFERGVGALAFSVADQGAFLCVVDDSNEHMLSVWDCSRGTKLAEIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWNGGAGVPGNGTLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSLSDSRTPGRGGAKETYGIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGPGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPFQNRFLTCGHDRQLCLWDGEAHALAWSLDLKETGLCADFHPSGAVVAVGLNTGRWLVLDTETREIVSDITDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSDGAKSSRFGRCVGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYDSRDREWATYTCVLGFHVYGAEPRVRRSRQPRDQRPVHVRRLAPRLAGRQGRQHLPVASAGRWERGAGACHALSNSLAVPRLLSRRLTAARRDPPALQRGPAPPKFPRTRADPVLDFETFPKAHFPAGGERHPCTHCKDPLAEPGSPSLGPDSRYLLRGNK", "length": 927, "header": "tr|A0A5G2R6C1-1|A0A5G2R6C1_PIG Computationally mapped isoform of EMAP like 3 OS=Sus scrofa OX=9823 GN=EML3 PE=3 SV=2 CANONICAL=F1RPX2-1" }, "locus": { "chromosome": "2", "start_pos": 9137637, "end_pos": 9127991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069557.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069557.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069671.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069671.2" } ] } }, { "isoform_ac": "F1RPX2-1", "url": "https://www.uniprot.org/uniprotkb/F1RPX2/entry", "sequence": { "sequence": "MDGAGGPAEGPAQEALQSLSRRLQVQEKEMELVKAALAEALRLLRLQVPPSPLQDPGTPGPPRDSSPATPPGLPPTCNPSFVSRGTQTEVEVEMEPSPGPPGLSNGPPAPQGGSEEPSGTQSEGGGSSSSGTGSPGPPGILRLAQPPQRTDTPRRNSSSSSSPSERPRQKLSRKAASSANLLLRSGSTESRGGKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHVWDSETLQKLQEIGLGAFERGVGALAFSVADQGAFLCVVDDSNEHMLSVWDCSRGTKLAEIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWNGGAGVPGNGTLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSLSDSRTPGRGGAKETYGIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGPGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPFQNRFLTCGHDRQLCLWDGEAHALAWSLDLKETGLCADFHPSGAVVAVGLNTGRWLVLDTETREIVSDITDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSDGAKSSRFGRCVGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYDSRDREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSLVYGGHGSHVTSVRFTYDDSHLVSLGGKDASIFQWRVLGAGSAGQAPATPSRTPSLSPASSLDV", "length": 897, "header": "tr|F1RPX2-1|F1RPX2_PIG Isoform 1 of Echinoderm microtubule-associated protein-like 3 OS=Sus scrofa OX=9823 GN=EML3 PE=1 SV=3 CANONICAL=F1RPX2-1" }, "locus": { "chromosome": "2", "start_pos": 9137413, "end_pos": 9127991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014277.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014277.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013891.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013891.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 58, "start_aa": "Thr", "end_pos": 58, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr58", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 69, "start_aa": "Thr", "end_pos": 69, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 882, "start_aa": "Thr", "end_pos": 882, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr882", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X3A0-1", "protein_name": "EMAP like 3", "gene_name": "EML3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGKGLGLWVCALGGGGEGWGGRRFGGGVGGKVEGGAGGGAAGSLVGRGDLGGGGGGAHPYADAPLWWWCSPPPISLLFPPISPHAPISLHLTPHLPPPPPVPPPAYAGTAPPPAAAAPAATSAGKRRHPPTSWGAPRGGGPPRPPPYPNPPPTTYPQTPHTPLFQPPHTPKPPKAPHTPEAPTNPTPPPPRYPNPPTKHLKAPPRKPPPQKPLYSDLTHNTPPHTPSPPHTPPIHQHPPTPASPPPKNPTPPTLQPPHPKHPPISPPQLQNCPNPPCTPKLPPMPPPQTPNPLHPKAPPPRTPKLLQLPPSPPRGVSVKMFLRGRPITMYVPSGHVGFRPELPPERLQLDWVYGYRGRDSRSNLHVLGSGELIYFIACVVVLLHVPLRRQRHYLRHSDCVRCLAVHPDRLRVATGQAAGVDKDGKPLQPVVHIWDSATLLTLQQIGLGSFERGVGSLAFSCADQGSYLCVVDDSNEHMMSVWDCARGTKLAEVKSTNESVLSVEFNPQDSSSIITSGKSHVYFWTWSGATLTKKQGIFGKYKKPKFIQCFVFDAAGDVLTGDSEGNILTWTRAGDGRGTYQIGQQTRAHEGSVFALCRRRDGTVLSGGGKDRRVLSWSPALSLLQEAEIPERFGAVRTIAEGPGEELLVGTTRNALLRGTLSGGFTAIVQGHTDEVWGLATHPTRCLFLTCGHDRQLCLWDGQEHALAWSLDTGLCADFHPGGQVVVVGLLTGRWVVLDTETQQPLAGGSDGNEQLSVVRFSPDGAFLAIGSHDNVIYIYSVTEEGRRYNRFGRCTGHSSFITHLDWSKDGHFIMSNSGDYEILYWDVAGGCKLLRNRFESRDREWASYTCVLGFHVFGVWPDGSDGTDINSLCRSHHERLVAVADDFCKVHLFQYPCARPKAPSHVYGGHGSHVTNVRFTHDDGHLVSLGGKDTGVFQWRALPVPPPPPPKSNPGTKGAPPPPPPPKTLFTVTIKPCIRGPPPCCFRFRCHPEGDGRSVAGSSGRSVRKDSSSPRSSRVAFRKFPRL", "length": 1028 }, "evidence": [ { "id": "F1RPX2", "url": "https://omabrowser.org/oma/group/F1RPX2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A4R1-1", "protein_name": "Echinoderm microtubule-associated protein-like 3", "gene_name": "Eml3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGTAGPGEGPAHETLQTLSQRLRVQEEEMELVKAALAEALRLLRLHGPTTTLQGSGISAPTRNSSITVPPGLPPTCSPSLVSRGTQTEGGLEMEPISGPPGLSNGPPALQGGSEEPSGTQSEGGCSSSSGAGSPGPPGILRPVQPLQRSDTPRRNSSSSSSPSERPRQKLSRKAASSANLLLRSGSTESRGNKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPSETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHIWDSETLQKLQEIGLGAFERGVGALAFSAADQGAFLCVVDDSNEHMLSVWDCSRGVKLAEIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWSGGTGVPGNGILARKQGVFGKYKKPKFIPCFVFLPDGNILTGDSEGNILTWGRSVSDSKTPGRGGAKETYTIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGLGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPFQNRFLTCGHDRQLCLWDGEGHALAWSMDLKETGLCADFHPSGAVVVVGLNTGRWLVLDTETREIVSDVTDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSCGTKSSRFGRCMGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYESRDREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSRMYSGHGSHVTSVRFTHDDSFLVSLGGKDASIFQWRVLGAGSSGPAPATPSRTPSLSPASSLDV", "length": 897 }, "evidence": [ { "id": "F1RPX2", "url": "https://omabrowser.org/oma/group/F1RPX2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q32P44-1", "protein_name": "Echinoderm microtubule-associated protein-like 3", "gene_name": "EML3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGAAGPGDGPAREALQSLSQRLRVQEQEMELVKAALAEALRLLRLQVPPSSLQGSGTPAPPGDSLAAPPGLPPTCTPSLVSRGTQTETEVELKSSPGPPGLSNGPPAPQGASEEPSGTQSEGGGSSSSGAGSPGPPGILRPLQPPQRADTPRRNSSSSSSPSERPRQKLSRKAISSANLLVRSGSTESRGGKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHIWDSETLLKLQEIGLGAFERGVGALAFSAADQGAFLCVVDDSNEHMLSVWDCSRGMKLAEIKSTNDSVLAVGFNPRDSSCIVTSGKSHVHFWNWSGGVGVPGNGTLTRKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSPSDSKTPGRGGAKETYGIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGLGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPSQNRFLTCGHDRQLCLWDGESHALAWSIDLKETGLCADFHPSGAVVAVGLNTGRWLVLDTETREIVSDVIDGNEQLSVVRYSPDGLYLAIGSHDNVIYIYSVSSDGAKSSRFGRCMGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKQLKNRYESRDREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSRMYGGHGSHVTSVRFTHDDSHLVSLGGKDASIFQWRVLGAGGAGPAPATPSRTPSLSPASSLDV", "length": 896 }, "evidence": [ { "id": "F1RPX2", "url": "https://omabrowser.org/oma/group/F1RPX2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VC03-1", "protein_name": "Echinoderm microtubule-associated protein-like 3", "gene_name": "Eml3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGAAGPGEGPAHETLQTLSQRLRVQEEEMELVKAALAEALRLLRLHGSTTTLQGSGISAPTRNSSITVPPGLPPTCSPSLVTRGTQTEEELEIVPSSGPPGLSNGPPALQGGSEEPSGTQSEGGCSSSSGAGSPGPPGILRPVQPLQRSDTPRRNSSSSSSPSERPRQKLSRKAASSANLLLRSGSTESRGNKDPLSSPGGPGSRRSNYNLEGISVKMFLRGRPITMYIPSGIRSLEELPSGPPPETLSLDWVYGYRGRDSRSNLFVLRSGEVVYFIACVVVLYRPGGGPGGPGGGGQRHYRGHTDCVRCLAVHPDGVRVASGQTAGVDKDGKPLQPVVHIWDSETLLKLQEIGLGAFERGVGALAFSAADQGAFLCVVDDSNEHMLSVWDCSRGVKLAEIKSTNDSVLAVGFSPRDSSCIVTSGKSHVHFWNWSGGTGAPGNGLLARKQGVFGKYKKPKFIPCFVFLPDGDILTGDSEGNILTWGRSVSDSKTPGRGGAKETYTIVAQAHAHEGSIFALCLRRDGTVLSGGGRDRRLVQWGPGLVALQEAEIPEHFGAVRAIAEGLGSELLVGTTKNALLRGDLAQGFSPVIQGHTDELWGLCTHPSQNRFLTCGHDRQLCLWDGEGHALAWSMDLKETGLCADFHPSGAVVVVGLNTGRWLVLDTETREIVSDVTDGNEQLSVVRYSPDGLYLAIGSHDNMIYIYSVSSCGTKSSRFGRCMGHSSFITHLDWSKDGNFIMSNSGDYEILYWDVAGGCKLLRNRYESRDREWATYTCVLGFHVYGVWPDGSDGTDINSLCRSHNERVVAVADDFCKVHLFQYPCARAKAPSRMYSGHGSHVTSVRFTHDDSYLVSLGGKDASIFQWRVLGAGSSGPAPATPSRTPSLSPASSLDV", "length": 897 }, "evidence": [ { "id": "F1RPX2", "url": "https://omabrowser.org/oma/group/F1RPX2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "mitotic spindle", "id": "GO:0072686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072686", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "mitotic spindle microtubule", "id": "GO:1990498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990498", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "mitotic metaphase chromosome alignment", "id": "GO:0007080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007080", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" }, { "name": "regulation of mitotic spindle assembly", "id": "GO:1901673", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901673", "evidence": [ { "database": "UniProtKB", "id": "F1RPX2", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RPX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" }, { "id": "PF23409", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23409" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EML-like first beta-propeller", "eco_id": "ECO_0000259", "start_pos": 299, "end_pos": 584, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RPX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPX2" }, { "id": "PF23414", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23414" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EML-like second beta-propeller", "eco_id": "ECO_0000259", "start_pos": 601, "end_pos": 870, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 58, 69, 882 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 }, { "start_pos": 406, "end_pos": 408 }, { "start_pos": 444, "end_pos": 446 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { 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"categories": [ "Gene Expression" ] }, { "id": "100511001", "url": "https://www.ncbi.nlm.nih.gov/gene/100511001", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511001", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511001", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GDTPDWP", "url": "https://omabrowser.org/oma/group/GDTPDWP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RPY8", "url": "https://www.orthodb.org/?gene=F1RPY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34589:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34589:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18658", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18658", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RPY8", "url": "https://www.uniprot.org/uniprotkb/F1RPY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPY8-1", "url": "https://www.uniprot.org/uniprotkb/F1RPY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALKAEGSALDCFEVTLKCEEGEDDEEAMVVAVIPRPEPMLRVAQQEKTPPPRPSLLEAGSDGCEEPKQQVSWEQEFLVGNSPGGSGRALCMVCGAEIRAPSADTARTHILEQHPHTLDLSPSEKSNILEAWSEGVALLQDFRAEQPSPPHSDPGQDVDADPDSDPDPAKMPAEIVVLLDSEDSTSLPRRSRPRGLRPLELPAAPAPEPVSKKPRGQRWKEPPGEEPVRKKRGRPMTKPLDLDPDPDPDPPSPDSPTETFAAPPEVRHFTDGSFPPGFVLQLFSHTQLRASDSKDSPKEVGVAEGGLLQAESPSPAPPPGLRGTLDLQVIHVRLEEPPAVSLLQDWSKHPQGSKGVGAGDTPDWPSVLSESSTTVRGQPEAGSGV", "length": 385, "header": "tr|F1RPY8-1|F1RPY8_PIG Isoform 1 of Spindlin interactor and repressor of chromatin binding OS=Sus scrofa OX=9823 GN=SPINDOC PE=4 SV=3 CANONICAL=F1RPY8-1" }, "isoforms": [ { "isoform_ac": "F1RPY8-1", "url": "https://www.uniprot.org/uniprotkb/F1RPY8/entry", "sequence": { "sequence": "MALKAEGSALDCFEVTLKCEEGEDDEEAMVVAVIPRPEPMLRVAQQEKTPPPRPSLLEAGSDGCEEPKQQVSWEQEFLVGNSPGGSGRALCMVCGAEIRAPSADTARTHILEQHPHTLDLSPSEKSNILEAWSEGVALLQDFRAEQPSPPHSDPGQDVDADPDSDPDPAKMPAEIVVLLDSEDSTSLPRRSRPRGLRPLELPAAPAPEPVSKKPRGQRWKEPPGEEPVRKKRGRPMTKPLDLDPDPDPDPPSPDSPTETFAAPPEVRHFTDGSFPPGFVLQLFSHTQLRASDSKDSPKEVGVAEGGLLQAESPSPAPPPGLRGTLDLQVIHVRLEEPPAVSLLQDWSKHPQGSKGVGAGDTPDWPSVLSESSTTVRGQPEAGSGV", "length": 385, "header": "tr|F1RPY8-1|F1RPY8_PIG Isoform 1 of Spindlin interactor and repressor of chromatin binding OS=Sus scrofa OX=9823 GN=SPINDOC PE=4 SV=3 CANONICAL=F1RPY8-1" }, "locus": { "chromosome": "2", "start_pos": 8239244, "end_pos": 8227930, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014261.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014261.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013875.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013875.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPY8", "url": "https://www.uniprot.org/uniprotkb/F1RPY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511001", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511001", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KB48-1", "protein_name": "Spindlin interactor and repressor of chromatin binding", "gene_name": "Spindoc", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRAEGAAALDCFEVTLKCEEGDDDDEEAVVVAVIPRPEPMLRVTQQEKTPPPRPNLLEAGVEGCEEPKQQVSWEQEFLVGNSPGGSGRALCMVCGAEIRSPSADTARTHILEQHPHTLDLSPSEKSNILEAWSEGVALLQDIQTDQPSLPSLESGQDGQPDPISNPDPARMPAEIVVLLDSEDNPSLPKRLRPRGLRPLELPVAPVIEQGNKKPRGQRWKESPEDEPARKKRSRHVTKILDPDPDPPSPESPTETFAAPAEVRHFTDGSFPPGFVLQLFSHTQLRTTDSKNSSKDSKAAEGLPQPQSPSSASPPGLRGTLDLQVIRVRMEEPPAVSLLQDWSKHPQGTKGLGTGDNPGWPTVLSESSATVKGQPEAGSGV", "length": 382 }, "evidence": [ { "id": "F1RPY8", "url": "https://omabrowser.org/oma/group/F1RPY8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9TQY3-1", "protein_name": "Spindlin interactor and repressor of chromatin binding", "gene_name": "SPINDOC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALKAEGAALDCFEVTLKCEEGEDDEEAMVVAVIPRPEPMLRVAQQEKIPPPRPSLLEAGNDSSEEPRQQVSWEQEFLVGNSPGGSGRALCMVCGAEIQAPSADTARAHILEQHPHTLDLSPSEKSNILEAWSEGAALVQDFRAEQPSPPHSDSGQDSDLDPARMPAEIVVLLDSEDNQSLPRRTRPRGLRPLELPAAPVPEPVSKKPRGQRCKEPSGEEPVRKKRGRPMTKTLDLDPDPDPDPPSPDSPMETFAAPAEVRHFTDGSFPAGFALQLFSHTQLRASNRRDLPKEGKGAEGGRLQPESPSPAPPPGLRGTLDLQVIRVRLEEPPAVSLLQDWSKHPQGAKGVGAGDAPDWPAALSESSSAVGAQPEAGSGLALHRRWS", "length": 386 }, "evidence": [ { "id": "F1RPY8", "url": "https://omabrowser.org/oma/group/F1RPY8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q05AH6-1", "protein_name": "Spindlin interactor and repressor of chromatin-binding protein", "gene_name": "Spindoc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALKAKGAAALDCFEVTLKCEEGDDDDEAVVVAVIPRPEPMLRVTQQEKTPPPRPNLLEAGVEGCEELKQQVSWEQEFLVGNSPGGSGRALCMVCGAEIRSPSADTARAHILEQHPHTLDLSPSEKSNILEAWSEGVALLQDIQADQPSLPSLESGQDGQPDPISNPDPVRMPAEIVVLLDSEDNPSLPKRLRPRGLRPLELPVTPVIEQGNKKPRGQRWKESPENEPARKKRSRHMTKILDPDPDPPSPESPTETFAAPAEVRHFTDGSFPPGFVLQLFSHTQLRTTDCKDSSKDSRAAEGLPQPQNPSSASPPGLRGTLDLQVIRVRMEEPPAVSLLQDWSKHPQGTKGVGTGDKPDWPTVLSESSATVKGQPKAGSGV", "length": 381 }, "evidence": [ { "id": "F1RPY8", "url": "https://omabrowser.org/oma/group/F1RPY8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BUA3-1", "protein_name": "Spindlin interactor and repressor of chromatin-binding protein", "gene_name": "SPINDOC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALKAEGAALDCFEVTLKCEEGEDEEEAMVVAVIPRPEPMLRVTQQEKTPPPRPSPLEAGSDGCEEPKQQVSWEQEFLVGSSPGGSGRALCMVCGAEIRAPSADTARSHILEQHPHTLDLSPSEKSNILEAWSEGVALLQDVRAEQPSPPNSDSGQDAHPDPDANPDAARMPAEIVVLLDSEDNPSLPKRSRPRGLRPLELPAVPATEPGNKKPRGQRWKEPPGEEPVRKKRGRPMTKNLDPDPEPPSPDSPTETFAAPAEVRHFTDGSFPAGFVLQLFSHTQLRGPDSKDSPKDREVAEGGLPRAESPSPAPPPGLRGTLDLQVIRVRMEEPPAVSLLQDWSRHPQGTKRVGAGDTSDWPTVLSESSTTVAGKPEKGNGV", "length": 381 }, "evidence": [ { "id": "F1RPY8", "url": "https://omabrowser.org/oma/group/F1RPY8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RPY8", "url": "https://www.uniprot.org/uniprotkb/F1RPY8" } ], "pmid": "" }, { "name": "site of DNA damage", "id": "GO:0090734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090734", "evidence": [ { "database": "UniProtKB", "id": "F1RPY8", "url": "https://www.uniprot.org/uniprotkb/F1RPY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1RPY8", "url": "https://www.uniprot.org/uniprotkb/F1RPY8" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1RPY8", "url": "https://www.uniprot.org/uniprotkb/F1RPY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RPY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 385, "overlap": "1.0", "method": "AlphaFold", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RPZ1-1", "uniprot_ac": "F1RPZ1", "uniprot_id": "F1RPZ1_PIG", "mass": { "chemical_mass": 74161.0, "monoisotopic_mass": 74161.0 }, "refseq": { "ac": "XP_020938544", "name": "leucine-rich repeat transmembrane protein FLRT1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938544" }, "gene_names": [ { "name": "FLRT1", "type": "recommended", "evidence": [ { "id": "F1RPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1" } ] }, { "name": "FLRT1", "type": "synonym", "evidence": [ { "id": "XP_020938544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938544" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat transmembrane protein FLRT1", "type": "recommended", "evidence": [ { "id": "F1RPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat transmembrane protein FLRT1", "type": "synonym", "evidence": [ { "id": "XP_020938544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938544" } ] } ], "function": [ { "annotation": "Plays a role in fibroblast growth factor-mediated signaling cascades that lead to the activation of MAP kinases. Promotes neurite outgrowth via FGFR1-mediated activation of downstream MAP kinases. Promotes an increase both in neurite number and in neurite length. May play a role in cell-cell adhesion and cell guidance via its interaction with ADGRL1/LPHN1 and ADGRL3.", "evidence": [ { "database": "UniProtKB", "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1#function" }, { "database": "UniProtKB", "id": "ARBA00058095", "url": "https://www.uniprot.org/uniprotkb/ARBA00058095#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FLRT1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1", "locus": { "chromosome": "2", "start_pos": 7976567, "end_pos": 7991150, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013044", "url": "https://www.ensembl.org/id/ENSSSCG00000013044" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013044", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013044", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522361", "url": "https://www.ncbi.nlm.nih.gov/gene/100522361", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522361", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522361", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WLYDWLH", "url": "https://omabrowser.org/oma/group/WLYDWLH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RPZ1", "url": "https://www.orthodb.org/?gene=F1RPZ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01463", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01463", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13306", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13306", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5654687", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654687", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020938544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RPZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVAHPTATATATPAATVTATVVMTTAAMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLKTKVNVQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPRTLEELRLDDNRISTIPLHAFKGLSRLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSARLQKLYLQDNAISHVPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLENLAQLLLRNNPWFCGCNLLWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFEGGAQGGMANPAAKTTASDHASATTPQGSLFTLKAKRPGLRLPDSSLDYPMATGNGAKTLVIHVKPLTADSIRITWKATLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETGNTYVADETPVCAKAETADSYSPTTTLNQEQNADPMAGLPLAGIIGGAAALVFLFLVLGAICWYVHRASELLTRERAYNRGSRKKDDYVESGTKKDNSILEIRGPGLQMLPINPYRAKEEYVVHTIFPSNGSSLCKGTHTIGYGTTRGYRDGGIPDIDYSYT", "length": 674, "header": "tr|F1RPZ1-1|F1RPZ1_PIG Isoform 1 of Leucine-rich repeat transmembrane protein FLRT1 OS=Sus scrofa OX=9823 GN=FLRT1 PE=4 SV=2 CANONICAL=F1RPZ1-1" }, "isoforms": [ { "isoform_ac": "F1RPZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1/entry", "sequence": { "sequence": "MVVAHPTATATATPAATVTATVVMTTAAMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLKTKVNVQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPRTLEELRLDDNRISTIPLHAFKGLSRLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSARLQKLYLQDNAISHVPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLENLAQLLLRNNPWFCGCNLLWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFEGGAQGGMANPAAKTTASDHASATTPQGSLFTLKAKRPGLRLPDSSLDYPMATGNGAKTLVIHVKPLTADSIRITWKATLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETGNTYVADETPVCAKAETADSYSPTTTLNQEQNADPMAGLPLAGIIGGAAALVFLFLVLGAICWYVHRASELLTRERAYNRGSRKKDDYVESGTKKDNSILEIRGPGLQMLPINPYRAKEEYVVHTIFPSNGSSLCKGTHTIGYGTTRGYRDGGIPDIDYSYT", "length": 674, "header": "tr|F1RPZ1-1|F1RPZ1_PIG Isoform 1 of Leucine-rich repeat transmembrane protein FLRT1 OS=Sus scrofa OX=9823 GN=FLRT1 PE=4 SV=2 CANONICAL=F1RPZ1-1" }, "locus": { "chromosome": "2", "start_pos": 7981672, "end_pos": 7979651, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095794.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095794.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080845.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080845.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 13, "start_aa": "Thr", "end_pos": 13, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr13", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522361", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522361", "resource": "KEGG Pathway" }, { "id": "R-SSC-5654687", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654687", "resource": "Reactome", "description": "Downstream signaling of activated FGFR1" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AC39-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT1", "gene_name": "Flrt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVAHPAATATTTPAATVTATVVMTTATMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPSDIPDDATTLYLQNNQINNAGIPQDLKTKVKVQVIYLYENDLDEFPINLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPHTLEELRLDDNRISTIPLHAFKGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSAHLQKLYLQDNAISHIPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLGNLAQLLLRNNPWFCGCNLMWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFEAGSQGSAANAAAKTTASNHASATTPQGSLFTLKAKRPGLRLPDSNIDYPMATGDGAKTLVIQVKPLTADSIRITWKAMLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETGNTYVADETPVCAKAETADSYGPTTTLNQEQNAGPMAGLPLAGIIGGAVALVFLFLVLGAICWYVHRAGELLTRERVYNRGSRKKDDYMESGTKKDNSILEIRGPGLQMLPINPYRSKEEYVVHTIFPSNGSSLCKGAHTIGYGTTRGYREGGIPDVDYSYT", "length": 674 }, "evidence": [ { "id": "F1RPZ1", "url": "https://omabrowser.org/oma/group/F1RPZ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I875-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT1", "gene_name": "Flrt1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVVAHPTATTTTTPAATVTATVVMTTATMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPSDIPDDATTLYLQNNQINNAGIPQDLKTKVKVQVIYLYENDLDEFPINLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEDDAFADSKQLKLLFLSRNHLSSIPSGLPHTLEELRLDDNRISTIPLHAFKGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSAHLQKLYLQDNAISHIPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLGNLAQLLLRNNPWFCGCNLMWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFEAGSQGSAANAAAKTTASNHASATTPQGSLFTLKAKRPGLRLPDSNIDYPMATGEGAKTLVIQVKPLTADSIRITWKAMLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETGNTYVADETPVCAKAETADSYGPTTTLNQEQNASPMAGLPLAGIIGGAVALVFLFLVLGAICWYVHRAGELLTRERVYNRGNRKKDDYMESGTKKDNSILEIRGPGLQMLPINPYRSKEEYVVHTIFPSNGSSLCKGAHPIGYGTTRGYRDGGIPDVDYSYT", "length": 674 }, "evidence": [ { "id": "F1RPZ1", "url": "https://omabrowser.org/oma/group/F1RPZ1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MY74-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT1", "gene_name": "FLRT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVAHPTAAAATTATPATTVTATVVMTTATMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLKTKVNVQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPRTLEELRLDDNRISTIPLHAFKGLSSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSARLQKLYLQDNAISHVPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLENLAQLLLRNNPWFCGCNLLWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFEAGAQGGAVNAAAKTTHASDHASVTTPQGSLFTLKAKRPGLRLPDSSLDYPMATGDSAKTLAIHVKPLTADSIRITWKATLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMDTGNTYVADETPVCAKAETADSSGPATTLNQEQNADPMAGLPLAGIIGGAVALVFLFLVLGAICWYVHRASELLTRERAYNRGSRKKDDYLESGTKKDNSILEIRGPGLQMLPINPYRAKEEYVVHTIFPSNGSSLCKGTHTIGYGTTRGYRDGGIPDIDYSYT", "length": 677 }, "evidence": [ { "id": "F1RPZ1", "url": "https://omabrowser.org/oma/group/F1RPZ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6RKD8-2", "protein_name": "Leucine-rich repeat transmembrane protein FLRT1", "gene_name": "Flrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVVAHSAATATTTPAATVTATVVMTTATMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPSDIPDDATTLYLQNNQINNAGIPQDLKTKVKVQVIYLYENDLDEFPINLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPHTLEELRLDDNRISTIPLHAFKGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSAHLQKLYLQDNAISHIPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLGNLAQLLLRNNPWFCGCNLMWLRDWVRARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFEAGSQGGAANAAAKTTVSNHASATTPQGSLFTLKAKRPGLRLPDSNIDYPMATGDGAKTLVIQVKPLTADSIRITWKAMLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETGNTYVADETPVCAKAETADSYGPTTTLNQEQNAGPMAGLPLAGIIGGAVALVFLFLVLGAICWYVHRAGELLTRERVYNRGSRRKDDYMESGTKKDNSILEIRGPGLQMLPINPYRSKEEYVVHTIFPSNGSSLCKGAHTIGYGTTRGYREAGIPDVDYSYT", "length": 674 }, "evidence": [ { "id": "F1RPZ1", "url": "https://omabrowser.org/oma/group/F1RPZ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZU1-2", "protein_name": "Leucine-rich repeat transmembrane protein FLRT1", "gene_name": "FLRT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVAHPTATATTTPTATVTATVVMTTATMDLRDWLFLCYGLIAFLTEVIDSTTCPSVCRCDNGFIYCNDRGLTSIPADIPDDATTLYLQNNQINNAGIPQDLKTKVNVQVIYLYENDLDEFPINLPRSLRELHLQDNNVRTIARDSLARIPLLEKLHLDDNSVSTVSIEEDAFADSKQLKLLFLSRNHLSSIPSGLPHTLEELRLDDNRISTIPLHAFKGLNSLRRLVLDGNLLANQRIADDTFSRLQNLTELSLVRNSLAAPPLNLPSAHLQKLYLQDNAISHIPYNTLAKMRELERLDLSNNNLTTLPRGLFDDLGNLAQLLLRNNPWFCGCNLMWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDECFETGPQGGVANAAAKTTASNHASATTPQGSLFTLKAKRPGLRLPDSNIDYPMATGDGAKTLAIHVKALTADSIRITWKATLPASSFRLSWLRLGHSPAVGSITETLVQGDKTEYLLTALEPKSTYIICMVTMETSNAYVADETPVCAKAETADSYGPTTTLNQEQNAGPMASLPLAGIIGGAVALVFLFLVLGAICWYVHQAGELLTRERAYNRGSRKKDDYMESGTKKDNSILEIRGPGLQMLPINPYRAKEEYVVHTIFPSNGSSLCKATHTIGYGTTRGYRDGGIPDIDYSYT", "length": 674 }, "evidence": [ { "id": "F1RPZ1", "url": "https://omabrowser.org/oma/group/F1RPZ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1RPZ1", "url": "https://www.uniprot.org/uniprotkb/F1RPZ1" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": 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"MKRTMSSECLLPYYTANSYRSMGVFNTSMGDLQRQLYKGGEYDIFKYAPMFESDFIQISKKGEVIDVHNRVRMVTVGIASTSPILPLPDVMLLARPTKVCEEHVRYTRPTKGRGRKPAKTLELTRLLPLKFVKISIHDREKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPVESCSSTPTLQTGDVTTEDDKSLLLTPEHHRERDQDEVELQKLRDVSGAGSGAYVGGEGIQHVPQGSDLAKKSAEGAAAAGTTEGLGLAVAGSRMSTGGGVAVAGVGTGSTTGAVSLAATKSTGTSQVSMALAGATTKSSGESRASKAIAGAANISSEGTNLALVGAASTSSMGGDSPESSTSLVFAGTVTTGSPAAGRAEGQAAPPLVSTLQSEGYMCERDGSQKVSHPSTGARKEKKERRERKDKSSSRKSSRHRRTGESHHRTGGDKTRKSSSHRSLSDHGNRDDKKEKGQSGTRGRGRGSHKGGSRSSTTKEGRATHKLGKSRSTTSSGTLSKKSSKITSFFRSIRVIPGSKTAVTHDREVDFVAQAVEKRNLEARVEKAPVGQDLEICGTMRSETMETIIIETKSI", "length": 593, "header": "tr|F1RQD7-1|F1RQD7_PIG Isoform 1 of Golgi associated RAB2B interactor family member 3 OS=Sus scrofa OX=9823 GN=GARIN3 PE=3 SV=3 CANONICAL=F1RQD7-1" }, "isoforms": [ { "isoform_ac": "F1RQD7-1", "url": "https://www.uniprot.org/uniprotkb/F1RQD7/entry", "sequence": { "sequence": "MKRTMSSECLLPYYTANSYRSMGVFNTSMGDLQRQLYKGGEYDIFKYAPMFESDFIQISKKGEVIDVHNRVRMVTVGIASTSPILPLPDVMLLARPTKVCEEHVRYTRPTKGRGRKPAKTLELTRLLPLKFVKISIHDREKQQLRLKLATGRTFYLQLCPSSDAREDLFCYWEKLVYLLRPPVESCSSTPTLQTGDVTTEDDKSLLLTPEHHRERDQDEVELQKLRDVSGAGSGAYVGGEGIQHVPQGSDLAKKSAEGAAAAGTTEGLGLAVAGSRMSTGGGVAVAGVGTGSTTGAVSLAATKSTGTSQVSMALAGATTKSSGESRASKAIAGAANISSEGTNLALVGAASTSSMGGDSPESSTSLVFAGTVTTGSPAAGRAEGQAAPPLVSTLQSEGYMCERDGSQKVSHPSTGARKEKKERRERKDKSSSRKSSRHRRTGESHHRTGGDKTRKSSSHRSLSDHGNRDDKKEKGQSGTRGRGRGSHKGGSRSSTTKEGRATHKLGKSRSTTSSGTLSKKSSKITSFFRSIRVIPGSKTAVTHDREVDFVAQAVEKRNLEARVEKAPVGQDLEICGTMRSETMETIIIETKSI", "length": 593, "header": "tr|F1RQD7-1|F1RQD7_PIG Isoform 1 of Golgi associated RAB2B interactor family member 3 OS=Sus scrofa OX=9823 GN=GARIN3 PE=3 SV=3 CANONICAL=F1RQD7-1" }, "locus": { "chromosome": "16", "start_pos": 66101874, "end_pos": 66098667, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018571.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018571.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018071.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018071.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 75, "start_aa": "Thr", "end_pos": 75, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr75", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQD7", "url": "https://www.uniprot.org/uniprotkb/F1RQD7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "sperm head", "id": "GO:0061827", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061827", "evidence": [ { "database": "UniProtKB", "id": 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{ "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25437", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25437", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013418", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013418", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947836", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQK4-1", "url": "https://www.uniprot.org/uniprotkb/F1RQK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCRHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMATRPAGQNLQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDTMIQRLQQEQDLRRSGEAGVSNTSRLSRGSASSTSEVHSPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWSRRVVVPELSAGVASRQEEWRTAKGEEEIKTYRSEEKRKHFTVPKENKMPTVSKNHAHEHFLDLGESKKQQANQHNYRTRSALEETPRPSEEIENGTSSSDEGEVVAVSGGTSEEEERAWHSDGSSSDYSSDYSDWTADAGINLQPPKKIPKHKTKKAESSSDEEEESEKQKQKQIKKERKKVNEEKDGPVSPKKKKPKERKQKRLAVGELAENGLTLEEWLPSTWITDTIPRRCPFVPQMGDEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCLKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPWDMELIPNNAVFPEELGTSVPLTDVECRSLIYKPLDGEWGSNPRDEECERIVTGINQLMTLDIASAFVAPVDLQAYPMYCTVVAYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFIKDQTCYNIIPLYNSMKKKVLSDSEEEEKEDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQAWKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKRRKRRNRSSSVSSSAASSPERKKRILKPQLKSDVTTSLFSAPTRSIPPRHNAAQINGKTESSSVVRTRSNRVVMDPVNPEQPSTSSAAKTFISKANTSAIPGKTILENSVKLSKTLNTLSSPGQSNFSHGTRNNSAKENMEKEKPAKRKMKSPVLSKTPTLSKSSAVVEQADCKNNALVTGSIQVNGHGGQPSKLVKRGPGRKPKVEVNSSSGEVIHKKRGRKPKKLQYAKPENSEQNSMHPIRDEVVPSSTCSFLSETNIVKEDLLQKKSRGGRKPKRKMKTQKLDSDLIVPTSVKMLRRSNRKKTDDPLDEEEEFEELKGSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKAKANLIGW", "length": 1822, "header": "tr|F1RQK4-1|F1RQK4_PIG Isoform 1 of PH-interacting protein OS=Sus scrofa OX=9823 GN=PHIP PE=4 SV=4 CANONICAL=F1RQK4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE1/entry", "sequence": { "sequence": "MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCRHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTVHVIFFSLGGGLLCRFVSGSRDGTARIWQFKRREWKSILLDMATRPAGQNLQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDTMIQRLQQEQDLRRSGEAGVSNTSRLSRGSASSTSEVHSPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWSRRVVVPELSAGVASRQEEWRTAKGEEEIKTYRSEEKRKHFTVPKENKMPTVSKNHAHEHFLDLGESKKQQANQHNYRTRSALEETPRPSEEIENGTSSSDEGEVVAVSGGTSEEEERAWHSDGSSSDYSSDYSDWTADAGINLQPPKKIPKHKTKKAESSSDEEEESEKQKQKQIKKERKKVNEEKDGPVSPKKKKPKERKQKRLAVGELAENGLTLEEWLPSTWITDTIPRRCPFVPQMGDEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCLKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAWWFGTIESQEPLQPEYPDSFLTCFECFPLLWDNGDTEKMSPWDMELIPNNAVFPEELGTSVPLTDVECRSLIYKPLDGEWGSNPRDEECERIVTGINQLMTLDIASAFVAPVDLQAYPMYCTVVAYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFIKDQTCYNIIPLYNSMKKKVLSDSEEEEKEDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQAWKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKRRKRRNRSSSVSSSAASSPERKKRILKPQLKSDVTTSLFSAPTRSIPPRHNAAQINGKTESSSVVRTRSNRVVMDPVNPEQPSTSSAAKTFISKANTSAIPGKTILENSVKLSKTLNTLSSPGQSNFSHGTRNNSAKENMEKEKPAKRKMKSPVLSKTPTLSKSSAVVEQDCKNNALVTGSIQVNGHGGQPSKLVKRGPGRKPKVEVNSSSGEVIHKKRGRKPKKLQYAKPENSEQNSMHPIRDEVVPSSTCSFLSETNIVKEDLLQKKSRGGRKPKRKMKTQKLDSDLIVPTSVKMLRRSNRKKTDDPLDEEEEFEELKGSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKAKANLIGW", "length": 1825, "header": "tr|A0A5G2QXE1-1|A0A5G2QXE1_PIG Computationally mapped isoform of PH-interacting protein OS=Sus scrofa OX=9823 GN=PHIP PE=4 SV=1 CANONICAL=F1RQK4-1" }, "locus": { "chromosome": "1", "start_pos": 87242671, "end_pos": 87117224, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078780.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078780.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068815.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068815.1" } ] } }, { "isoform_ac": "F1RQK4-1", "url": "https://www.uniprot.org/uniprotkb/F1RQK4/entry", "sequence": { "sequence": "MSCERKGLSELRSELYFLIARFLEDGPCQQAAQVLIREVAEKELLPRRTDWTGKEHPRTYQNLVKYYRHLAPDHLLQICHRLGPLLEQEIPQSVPGVQTLLGAGRQSLLRTNKSCRHVVWKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKINPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMATRPAGQNLQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPLIRDANNFVLDEQTQQAPHLMPPPFLVDVDGNPHPSRYQRLVPGRENCREEQLIPQMGVTSSGLNQVLSQQANQEISPLDTMIQRLQQEQDLRRSGEAGVSNTSRLSRGSASSTSEVHSPPNVGLRRSGQIEGVRQMHSNAPRSEIATERDLVAWSRRVVVPELSAGVASRQEEWRTAKGEEEIKTYRSEEKRKHFTVPKENKMPTVSKNHAHEHFLDLGESKKQQANQHNYRTRSALEETPRPSEEIENGTSSSDEGEVVAVSGGTSEEEERAWHSDGSSSDYSSDYSDWTADAGINLQPPKKIPKHKTKKAESSSDEEEESEKQKQKQIKKERKKVNEEKDGPVSPKKKKPKERKQKRLAVGELAENGLTLEEWLPSTWITDTIPRRCPFVPQMGDEVYYFRQGHEAYVEMARKNKIYSINPKKQPWHKMELREQELMKIVGIKYEVGLPTLCCLKLAFLDPDTGKLTGGSFTMKYHDMPDVIDFLVLRQQFDDAKYRRWNIGDRFRSVIDDAWWFGTIESQEPLQPEYPDSLFQCYNVCWDNGDTEKMSPWDMELIPNNAVFPEELGTSVPLTDVECRSLIYKPLDGEWGSNPRDEECERIVTGINQLMTLDIASAFVAPVDLQAYPMYCTVVAYPTDLSTIKQRLENRFYRRVSSLMWEVRYIEHNTRTFNEPGSPIVKSAKFVTDLLLHFIKDQTCYNIIPLYNSMKKKVLSDSEEEEKEDADVPGTSTRKRKDHQPRRRLRNRAQSYDIQAWKKQCQELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKRNTITKRRKRRNRSSSVSSSAASSPERKKRILKPQLKSDVTTSLFSAPTRSIPPRHNAAQINGKTESSSVVRTRSNRVVMDPVNPEQPSTSSAAKTFISKANTSAIPGKTILENSVKLSKTLNTLSSPGQSNFSHGTRNNSAKENMEKEKPAKRKMKSPVLSKTPTLSKSSAVVEQADCKNNALVTGSIQVNGHGGQPSKLVKRGPGRKPKVEVNSSSGEVIHKKRGRKPKKLQYAKPENSEQNSMHPIRDEVVPSSTCSFLSETNIVKEDLLQKKSRGGRKPKRKMKTQKLDSDLIVPTSVKMLRRSNRKKTDDPLDEEEEFEELKGSEPHMRTRNQGRRTAFYNEDDSEEEQRQLLFEDTSLTFGTSSRGRVRKLTEKAKANLIGW", "length": 1822, "header": "tr|F1RQK4-1|F1RQK4_PIG Isoform 1 of PH-interacting protein OS=Sus scrofa OX=9823 GN=PHIP PE=4 SV=4 CANONICAL=F1RQK4-1" }, "locus": { "chromosome": "1", "start_pos": 87242671, "end_pos": 87117224, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004941.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004941.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004824.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004824.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155644", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155644", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013418", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013418", "resource": "Reactome", "description": "RHOBTB2 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" }, { "name": "cytoskeleton organization", "id": "GO:0007010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007010", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone reader activity", "id": "GO:0140566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140566", "evidence": [ { "database": "UniProtKB", "id": "F1RQK4", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1446, "end_pos": 1448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1536, "end_pos": 1538, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1566, "end_pos": 1568, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1573, "end_pos": 1575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1649, "end_pos": 1651, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" }, { "start_pos": 666, "end_pos": 668, "annotation": "n_glycosylation_sequon" }, { "start_pos": 814, "end_pos": 816, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RQK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQK4" }, { "id": "PS50014", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bromo", "eco_id": "ECO_0000259", "start_pos": 1176, "end_pos": 1246, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 1446, "end_pos": 1448 }, { "start_pos": 1536, "end_pos": 1538 }, { "start_pos": 1566, "end_pos": 1568 }, { "start_pos": 1573, "end_pos": 1575 }, { "start_pos": 1649, "end_pos": 1651 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 666, "end_pos": 668 }, { "start_pos": 814, "end_pos": 816 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, 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"MEEKPFKVRTLPGPPHPVSTQTHPRSSLGSWLCSHSVPAQGSSQQSPSSPATESRPRLGSGSPPPACSSSPSQFSLASSDVCGPQASAKSSGRRGSGASSPQDIRNLWTTSTLSQPKLSVQLPTVCEDSELEGNSLGSKDGGWYHQKAGHDSDGGWEELDDGGDKDDFKPEEPDEHPLMELEMHRGSSPGSTLEDGDDDSRIDSEISSSVSSLNIPKYTPHRAYWVEQQNRLPLPLTVLMENEALEILTKALRSYRSEIGRDHFLTNQLQRYIEGLKRRRNKRMNVAGL", "length": 289, "header": "tr|F1RQP3-1|F1RQP3_PIG Isoform 1 of Catsper channel auxiliary subunit zeta OS=Sus scrofa OX=9823 GN=CATSPERZ PE=4 SV=3 CANONICAL=F1RQP3-1" }, "locus": { "chromosome": "2", "start_pos": 7816627, "end_pos": 7813730, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014240.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014240.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013854.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013854.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQP3", "url": "https://www.uniprot.org/uniprotkb/F1RQP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "CatSper complex", "id": "GO:0036128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036128", "evidence": [ { "database": "UniProtKB", "id": "F1RQP3", "url": "https://www.uniprot.org/uniprotkb/F1RQP3" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "F1RQP3", "url": "https://www.uniprot.org/uniprotkb/F1RQP3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1RQP3", "url": "https://www.uniprot.org/uniprotkb/F1RQP3" } ], "pmid": "" }, { "name": "sperm capacitation", "id": "GO:0048240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048240", "evidence": [ { "database": "UniProtKB", "id": "F1RQP3", "url": "https://www.uniprot.org/uniprotkb/F1RQP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": 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Classification" ] }, { "id": "F1RQT8", "url": "https://www.orthodb.org/?gene=F1RQT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24107:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24107:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954454", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954454", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RQT8", "url": "https://www.uniprot.org/uniprotkb/F1RQT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQT8-1", "url": "https://www.uniprot.org/uniprotkb/F1RQT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQETQTTPSLSIPSRSSTSTQDRSSTTGQASSTGPQPSKPPTIAPPVKPKGPSSGAGVHRMRRIIAEDTEWSLAIVPLLTELCIQHIVKNFQNNPILKQLLPEHQKKVLSHLPPDLPLAVTANLIDDENYWRRCCMQRWPVCHVDEHGGSWKRMFFELHLENLLKHFIPSTTDPEVILSLLPLCRNYVRTIRVDQFLPPVQLPSPPHGGDQSDSGSEGEMEEPAMDHYQLRDLVAGLDHLEELDLVYGVKDCGMNFEWNLFLFTYRDCHSLAATIKACHTLKVFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSHSRLRVLSLANNQVRAPGAQSLAHALAHNTNLLSLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTASLLSQVLSINTTLTSINLTGNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDIAQESEYLISQALCANREAARQQALNPSHFMSPITAKGPENPAG", "length": 501, "header": "tr|F1RQT8-1|F1RQT8_PIG Isoform 1 of Dynein regulatory complex subunit 5 OS=Sus scrofa OX=9823 GN=TCTE1 PE=3 SV=1 CANONICAL=F1RQT8-1" }, "isoforms": [ { "isoform_ac": "F1RQT8-1", "url": "https://www.uniprot.org/uniprotkb/F1RQT8/entry", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCP00000001858.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQT8", "url": "https://www.uniprot.org/uniprotkb/F1RQT8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156326", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156326", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ART2-1", "protein_name": "Dynein regulatory complex subunit 5", "gene_name": "Drc5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQETSTTASDPSSRSQSAFNIQRQVSTLGSTSPGPVSLKTSTSPAPSQLKTKTTNVRRMRRIISEDPEWSLAIVPLLTELCIQHIVKNFQNNPILKQLLPEHQKKVLSSLPPELPLSVTANLIEDENYWHRCCIKRWSVCHVSKHGDSWKRMFFERHLENLLKLFIPGTTDPNVILDLVPLCRNYVRRIHVDQFLPPVRMPTPPQGEEQSDSGSEGEGNEPEKNHYQLQALVGGLKYLEELDLVYGVKDCGMNFEWNLFLFTYRDCHSLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSHSRLRVLNLANNQLRASGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTVLNLGGNELSEPTATLLSQVLPVNTTLISLNLSCNHIGQDGGKQLLEGMSDNKTILEFDLRLSDVAQESEYLIGQVLHNNREAARQRTLSPGHLTLPTNNYSENSVG", "length": 498 }, "evidence": [ { "id": "F1RQT8", "url": "https://omabrowser.org/oma/group/F1RQT8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Z624-1", "protein_name": "T-complex-associated-testis-expressed 1", "gene_name": "TCTE1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQQAVGDGGRAVPSLRASQSRLMADSFCVHRIIEDPEWCLIAVPPLTELCLQHIVQNFTNNPVLDRLPPEDQRKVLARLPTGLPLTVTANLISDEGYWKRCCTERWQVCDISNHGGSWKRMFLERHLENILKCFVPNTTDPDRVLELIPLCRDYVRKLEVDQFLPPVKEDEKEETDDLSDSGSDLGFGEVYIHHYDLGALVPALPLLEELHLTYGVKDCGMNFEWNLFNFTYQDCCNLAAAVKMCHNLKVFKLTRSNVDDDRTRLLVRSLLDHPSLVELDLSHNLIGDKGAQAVSKLLNHSKLEILHLCNNQIRDEGAQALAQALAKNCTLTSLNLRLNHVEDKGGEAMGCALLTNTTLKSLHLGGNRLAEPTAVLFSQVLTQNSTLTCINFSCNPIGPDSLCSFCCTQPRLPAPPNHHPKHAPGLCASCELLGHHKRPAAYYRQCARLQTVDELVTIKAPTADSTSSFSKCDADIAGGSPVTFRLGYRRKQHQLQAPMQAGSIPLSMGHVWVCARLMGGWEEEAGE", "length": 527 }, "evidence": [ { "id": "F1RQT8", "url": "https://omabrowser.org/oma/group/F1RQT8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6H639-1", "protein_name": "Dynein regulatory complex subunit 5", "gene_name": "Drc5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQETPSVPSNSSSHSQSVLTIQRQVSALGSSSTGPTSLKTSSTPTPGQLKTKVPNVRRMRRIISEDAEWSLAIVPLLTELCIQHIVKNFQNNPILKQLPLEHQKKVLSNLPPELPLTVTANLIDDENYWHRCCIKRWSVCHVSRHGGSWKRMFFERHLENLLKLFIPGTTDPNVILDLLPLCRNYVRRIHVDQFLPPVRMPTPLQGEEQSDSGSEGEGSEPEKDHYQLQTLVGGLKHLEELDLVYGVKDCGMNFEWNLFLFTYRDCYSLAATIKACHTLKIFKLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSHSRLRVLNLANNQLQAPGAQSLAHALAHNTNLVFLNLRLNCIEDEGGQAIAHALETNKCLSVLHLGGNKLSEPTATLLSQMLTVNTTLVSLNLSCNHIGQDGGKQLLEGISDNKTILEFDLRLSDVSQESEYLIGQVLHANREAARQRTLNPGHFSSPTNNCTENSVV", "length": 498 }, "evidence": [ { "id": "F1RQT8", "url": "https://omabrowser.org/oma/group/F1RQT8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3HC80-1", "protein_name": "Dynein regulatory complex subunit 5", "gene_name": "Tcte1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHDPPATSSHPGSRTSMYNVQRQHSGLGGVSSATQAAKTSPSHAPGHLKSKIPSNRRMRRIISEDAEWTLAIVPLLTELCIQHIVKNFQNNPILKQLLPQHQQKVLSHLPPDLPLTVTANLIDDENYWHRCCIKRWPVCHVAKHGGSWKRMFFERHLENLLKLFIPGTTDPNVILDLLPLCRNYVRRIQVDQFLPPVRLPTPPQGDEQSDSGSDGEGNEPEKDHYQLEALVAGLKHLEELDLVYGVKDCGMNFEWNLFLFTFRDCHSLAATIKACHTLKIFRLTRSKVDDDKARILIRSLLDHPALEELDLSHNLIGDRGARAAAKLLSHSRLRVLNLANNQLRAPGAQSLAHALAHNTNLVSLNLRLNCIEDEGGQAIAHALETNKCLTTLHLGGNELSEPTATVLSQVLPINTILTSLNLSCNHIGVDGGKQLLEGMSENKTILEFDLRLSDVSQESEYLIGQALHANREAARQRALNPGHFMTPITNNGPENSVA", "length": 498 }, "evidence": [ { "id": "F1RQT8", "url": "https://omabrowser.org/oma/group/F1RQT8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5JU00-1", "protein_name": "Dynein regulatory complex subunit 5", "gene_name": "DRC5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQDTVTTSALLDPSHSSVSTQDNSSTGGHTSSTSPQLSKPSITPVPAKSRNPHPRANIRRMRRIIAEDPEWSLAIVPLLTELCIQHIIRNFQKNPILKQMLPEHQQKVLNHLSPDLPLAVTANLIDSENYWLRCCMHRWPVCHVAHHGGSWKRMFFERHLENLLKHFIPGTTDPAVILDLLPLCRNYVRRVHVDQFLPPVQLPAQLRPGDQSDSGSEGEMEEPTVDHYQLGDLVAGLSHLEELDLVYDVKDCGMNFEWNLFLFTYRDCLSLAAAIKACHTLKIFKLTRSKVDDDKARIIIRSLLDHPVLEELDLSQNLIGDRGARGAAKLLSHSRLRVLNLANNQVRAPGAQSLAHALAHNTNLISLNLRLNCIEDEGGQALAHALQTNKCLTTLHLGGNELSEPTATLLSQVLAINTTLTSINLSCNHIGLDGGKQLLEGMSDNKTLLEFDLRLSDVAQESEYLIGQALYANREAARQRALNPSHFMSTITANGPENSVG", "length": 501 }, "evidence": [ { "id": "F1RQT8", "url": "https://omabrowser.org/oma/group/F1RQT8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VEH4-1", "protein_name": "Dynein regulatory complex subunit 5", "gene_name": "Dmel\\CG14325", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDFTYCEFPSTVSIDTFKAYFNLTDVKLPKVGDKSVDTIQIPSEDQEDQTNQAKSLRHLVLDSIVENWSELPLYRQLGRREDRNYLLSHLDTQLPLQLLSAHIREDFFWQRCYGHRWRSAPLQARGRERPWINIYMERHVQEFIENMPTGDYEQDGNVQVVLDICAAYINQLEISFLQPAPPTTDANDHIPLDYLLSNLPDLRQLRLSYSTKTVGCNYQMGCNQLTVRDILHLTKGLSQCHELRTFCLHNTKLMPYQLRFLAHSLDKGCHHLTEMSLLHCAVGDAGIRCFLETCGKESFGTLTVLDLTNNKITEEGAYILSRTLRHVPLEKLVLRLNPIQSDGAAAIFNTLQVMPIKELDLGTCGITETITKLFMMLICQHTSLLEIDLSNNSLGEDFGKHLMKIISCNKLLERLDLRNTGLSLDMRRKFQEFLLKNVDRKKHEALKQKQRDKFKAMMQL", "length": 460 }, "evidence": [ { "id": "F1RQT8", "url": "https://omabrowser.org/oma/group/F1RQT8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1RQT8", "url": "https://www.uniprot.org/uniprotkb/F1RQT8" } ], "pmid": "" }, { "name": "microtubule-based movement", "id": "GO:0007018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007018", "evidence": [ { "database": "UniProtKB", "id": "F1RQT8", "url": "https://www.uniprot.org/uniprotkb/F1RQT8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1RQT8", "url": "https://www.uniprot.org/uniprotkb/F1RQT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 417, "end_pos": 419 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 445, "end_pos": 447 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { 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"recommended", "evidence": [ { "id": "F1RQU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQU6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Calcium-regulated non-lysosomal thiol-protease which catalyzes limited proteolysis of substrates involved in cytoskeletal remodeling and signal transduction.", "evidence": [ { "database": "UniProtKB", "id": "F1RQU6", "url": "https://www.uniprot.org/uniprotkb/F1RQU6#function" }, { "database": "UniProtKB", "id": "ARBA00059979", "url": "https://www.uniprot.org/uniprotkb/ARBA00059979#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RQU6", "url": "https://www.uniprot.org/uniprotkb/F1RQU6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAPN11", "url": "https://www.uniprot.org/uniprotkb/F1RQU6", "locus": { "chromosome": "7", "start_pos": 39191395, "end_pos": 39168991, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001698", "url": "https://www.ensembl.org/id/ENSSSCG00000001698" } ] } } ], "crossref": [ { "id": "F1RQU6", "url": "https://alphafold.ebi.ac.uk/entry/F1RQU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001698", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001698", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00044", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00044", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00214", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00214", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022682", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022682", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10183", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10183", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10183:SF322", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10183:SF322", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1474228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RQU6", "url": "https://www.uniprot.org/uniprotkb/F1RQU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQU6-1", "url": "https://www.uniprot.org/uniprotkb/F1RQU6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPSPVPEAAENVGSPGDQCVETSITNKGIAAHITQSRLRAKGVGQQHNAENYNNQSFEELRAICLRKGLLFEDPLFPAEPSSLGFRELGPNSKNVQNISWQRPSQITSNPQFIVNGVSPTDICQGVLGDCWLLAAIGSLTVYPKLFHRVVPKGQSFKKNYAGIFHFQIWQFGQWMDVVVDDRLPTKNGKLVFVHSAERTEFWSALLEKAYAKLNGSYEALSGGNTMEGFEDFTGGVTQSFQLQTPPQNLLRMLRKGIERSSLMGCSIEVTSNSDLESLTQRMLVKGHAYSVTGLQDIWYHGKTVTLIRVRNPWGRIEWNGAWSDNAKEWEEVSPDFQRQMLHRKEDGEFWMSYQDFLDNFTLLEICNLMPDTLSDYKSCWHTTFYEGSWRRGSTAGGCRSHLDTFWTNPQFKLSLPEEDDDDPEAEEAVCTCLVALMQKNWRRGRPHGAQLQTIGFVIYTIPKEFQNLQDIHLKRDFFEKYQDLGFSEIFTNSREVSNHLRLPPGEYIIIPSTFEPHKDADFLLRVFSEKHSESWELDEANCTQLLQEETISENEIDQNFLHLFQIVAGGEDKEIGVYELQKLLNKVASKFRHLKTKGFSLDVCRCMINLLDKDSSGKLGLQEFQILWRKIKKWTDIFQECDQDHSGTLNSYEMRLAIERAGIKLSNKVTQVLVARYANDDMILDFDSFISCFLRLKAMFTYFLTMDPNNTGQICLNLNQWLQITMWG", "length": 729, "header": "tr|F1RQU6-1|F1RQU6_PIG Isoform 1 of Calcium-activated neutral proteinase 11 OS=Sus scrofa OX=9823 GN=CAPN11 PE=3 SV=5 CANONICAL=F1RQU6-1" }, "isoforms": [ { "isoform_ac": "F1RQU6-1", "url": "https://www.uniprot.org/uniprotkb/F1RQU6/entry", "sequence": { "sequence": "MLPSPVPEAAENVGSPGDQCVETSITNKGIAAHITQSRLRAKGVGQQHNAENYNNQSFEELRAICLRKGLLFEDPLFPAEPSSLGFRELGPNSKNVQNISWQRPSQITSNPQFIVNGVSPTDICQGVLGDCWLLAAIGSLTVYPKLFHRVVPKGQSFKKNYAGIFHFQIWQFGQWMDVVVDDRLPTKNGKLVFVHSAERTEFWSALLEKAYAKLNGSYEALSGGNTMEGFEDFTGGVTQSFQLQTPPQNLLRMLRKGIERSSLMGCSIEVTSNSDLESLTQRMLVKGHAYSVTGLQDIWYHGKTVTLIRVRNPWGRIEWNGAWSDNAKEWEEVSPDFQRQMLHRKEDGEFWMSYQDFLDNFTLLEICNLMPDTLSDYKSCWHTTFYEGSWRRGSTAGGCRSHLDTFWTNPQFKLSLPEEDDDDPEAEEAVCTCLVALMQKNWRRGRPHGAQLQTIGFVIYTIPKEFQNLQDIHLKRDFFEKYQDLGFSEIFTNSREVSNHLRLPPGEYIIIPSTFEPHKDADFLLRVFSEKHSESWELDEANCTQLLQEETISENEIDQNFLHLFQIVAGGEDKEIGVYELQKLLNKVASKFRHLKTKGFSLDVCRCMINLLDKDSSGKLGLQEFQILWRKIKKWTDIFQECDQDHSGTLNSYEMRLAIERAGIKLSNKVTQVLVARYANDDMILDFDSFISCFLRLKAMFTYFLTMDPNNTGQICLNLNQWLQITMWG", "length": 729, "header": "tr|F1RQU6-1|F1RQU6_PIG Isoform 1 of Calcium-activated neutral proteinase 11 OS=Sus scrofa OX=9823 GN=CAPN11 PE=3 SV=5 CANONICAL=F1RQU6-1" }, "locus": { "chromosome": "7", "start_pos": 39191004, "end_pos": 39168991, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001897.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001897.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001850.5", "url": "https://www.ensembl.org/id/ENSSSCP00000001850.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., 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"Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RQU8", "url": "https://www.uniprot.org/uniprotkb/F1RQU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQU8-1", "url": "https://www.uniprot.org/uniprotkb/F1RQU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPAGPCGICPAGEAQPARYTCPRCNVPYCSLRCYRAHGTCAEDFYRDQVLGELRGRSASPSRLASALRRLRQQRETEDEPEDAGLRPGPAPGGLSGLWERLAPAEKAAFERLLSRGEAGRLLPPWRPWWWGRGAGPRLLEELGDAPGRDADELEPAPAGSPPEPVKDEPAAAGPTPGDAPGVCAPAVPTRIPTLASLSRGRASPLVRFQLPNVLFAYAHTLALYHGGDEALLSDFCATLLGVSGALGAQQVFTSAEEALQAAAHVLEAGEHPPGPLGTRGAMREAARILLGEGPANQKGYTLAALGDLAQTLGRARKQAVATEERDRLYRARKKCQFLLAWTNENEVALTPLALDCARAHRAHAVAAEEVAALTGELEQLWGGPLPPAPRTLIEELPG", "length": 399, "header": "tr|F1RQU8-1|F1RQU8_PIG Isoform 1 of Zinc finger HIT-type containing 2 OS=Sus scrofa OX=9823 GN=ZNHIT2 PE=4 SV=3 CANONICAL=F1RQU8-1" }, "isoforms": [ { "isoform_ac": "F1RQU8-1", "url": 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"glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 176, "start_aa": "Thr", "end_pos": 176, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr176", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQU8", "url": "https://www.uniprot.org/uniprotkb/F1RQU8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F7FG21-1", "protein_name": "Zinc finger, HIT-type containing 2", "gene_name": "Znhit2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCRKEASPALHAHKSGNNQRSAGSGGTGTGQAAPVSMEPAGLCGFCPAGEAVPARYTCPRCNAPYCSLRCYRAHGACAEDFYRDQVLRELRGRNASPSRLAGALRRLREQREAEDEPEETGLRPGTRPGGLSGLWERLAPAEKAAFERLLSRGEAGRLLPPWRPWWWGRGTGPRFLEELDDDASRDLAEPELLPARTGLESVDDAAAAGEPLAEDSSVARPPAMPARIPALASLSRSPTSPLVRFQLPNVLFAYAHTLALYHGGDDDALLSDFCATLLDVSGALGTQQVFHSTEEALQAAAHVLEAGEHPPGPLGTRGAMQEVARILLGEGPINQKGYTLIALGHLAQTLGRARKQAALTPLALDCARAHRAHAVTVEEMATLTGELERLWGGPVPPAPRILIEELPG", "length": 408 }, "evidence": [ { "id": "F1RQU8", "url": "https://omabrowser.org/oma/group/F1RQU8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2TBW5-1", "protein_name": "Zinc finger HIT domain-containing protein 2", "gene_name": "ZNHIT2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012998", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012998", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RQV3", "url": "https://www.uniprot.org/uniprotkb/F1RQV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQV3-1", "url": "https://www.uniprot.org/uniprotkb/F1RQV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFTDLLDALGGVGRFQLVYTALLLLPCCLLACHNFLQNFTAAVPRHHCQSPANHTVATDNDSGAWLRATVPLDRLGAPEPCRRFTKPQWALLSPNASVHGAATEGCHDGWVYDRSVFPSTIVTEWDLVCEARTLRDLAQSIYMTGVLVGAAVFGSLADRLGRKAPLVWSYLQLAVSGAATAYFGSFGAYCVFRFLMGMTFSGIILNSLSLVVEWMPTRGRTVAGVLLGYAFTLGQLILAGVAYLIRPWRWLQFAVSAPFLIFFLYSWWLPESSRWLLLHGKSQLALQNLRKVAAMNGRQEEGERLTEEVGGSSGTVSPGMKLDRSAASPRFSNSLAYYGLAMDLQKFGLSVYLVQVLFGMIDVPAMLVATTTMIHVGRRATVASFLILAGLMVIGNMFVPEDMQMLRTAQAALGKGCLASSFICVYLFTGELYPTEIRQMGMGFASVNARLGGLAAPLVTMLGEFSAVLPPMGFGATSILAGLAVCFLAETRNLPLLETIEAMERRVKGGLSGKDAEEKGEEISLQQLGVSPLRETI", "length": 538, "header": "tr|F1RQV3-1|F1RQV3_PIG Isoform 1 of Major facilitator superfamily (MFS) profile domain-containing protein OS=Sus scrofa OX=9823 GN=SLC22A20 PE=4 SV=4 CANONICAL=F1RQV3-1" }, 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RQY9-1", "uniprot_ac": "F1RQY9", "uniprot_id": "F1RQY9_PIG", "mass": { "chemical_mass": 87980.0, "monoisotopic_mass": 87980.0 }, "refseq": { "ac": "XP_020922526", "name": "protein FAM171A2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922526" }, "gene_names": [ { "name": "FAM171A2", "type": "recommended", "evidence": [ { "id": "F1RQY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQY9" } ] }, { "name": "FAM171A2", "type": "synonym", "evidence": [ { "id": "XP_020922526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922526" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 171 member A2", "type": "synonym", "evidence": [ { "id": "F1RQY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQY9/entry#names_and_taxonomy" } ] }, { "name": "protein FAM171A2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020922526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922526" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RQY9", "url": "https://www.uniprot.org/uniprotkb/F1RQY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM171A2", "url": "https://www.uniprot.org/uniprotkb/F1RQY9", "locus": { "chromosome": "12", "start_pos": 18893662, "end_pos": 18881355, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058254", "url": "https://www.ensembl.org/id/ENSSSCG00000058254" } ] } } ], "crossref": [ { "id": "F1RQY9", "url": "https://alphafold.ebi.ac.uk/entry/F1RQY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017356", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017356", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514069", "url": "https://www.ncbi.nlm.nih.gov/gene/100514069", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048530", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048530", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HLICAGP", "url": "https://omabrowser.org/oma/group/HLICAGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31626", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31626", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31626:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31626:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10577", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10577", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RQY9", "url": "https://www.uniprot.org/uniprotkb/F1RQY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RQY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPPSGPSVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRMLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTDASSSGNGSWLELMPVAAVSVHLLAGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFISPQLGYWAAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDGNKRDQATSMSQLHLICGGPLEPATSGDPEAPPPGPLHSAFSSSRDLAASRDDFFRAKPRSASRPAAEPAGARGGEGAGLKGARSVEGPGGLEPGLEEYRRGAPGTATFLQEPPSPPPPFEHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQAGQLIFCGSIDHLKDSVYRNVMPTLVIPAHYVRLGGEAGATGAGDEPAPPEGAAPGPARPFPQPDPQRPLMPGHPSAGGEGGGGGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGVDVHEARPARRRPLREERERAAAAAPPPPPPPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVAAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "length": 832, "header": "tr|F1RQY9-1|F1RQY9_PIG Isoform 1 of Family with sequence similarity 171 member A2 OS=Sus scrofa OX=9823 GN=FAM171A2 PE=1 SV=3 CANONICAL=F1RQY9-1" }, "isoforms": [ { "isoform_ac": "F1RQY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RQY9/entry", "sequence": { "sequence": "MPPPSGPSVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRMLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTDASSSGNGSWLELMPVAAVSVHLLAGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFISPQLGYWAAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDGNKRDQATSMSQLHLICGGPLEPATSGDPEAPPPGPLHSAFSSSRDLAASRDDFFRAKPRSASRPAAEPAGARGGEGAGLKGARSVEGPGGLEPGLEEYRRGAPGTATFLQEPPSPPPPFEHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQAGQLIFCGSIDHLKDSVYRNVMPTLVIPAHYVRLGGEAGATGAGDEPAPPEGAAPGPARPFPQPDPQRPLMPGHPSAGGEGGGGGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGVDVHEARPARRRPLREERERAAAAAPPPPPPPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVAAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "length": 832, "header": "tr|F1RQY9-1|F1RQY9_PIG Isoform 1 of Family with sequence similarity 171 member A2 OS=Sus scrofa OX=9823 GN=FAM171A2 PE=1 SV=3 CANONICAL=F1RQY9-1" }, "locus": { "chromosome": "12", "start_pos": 18893105, "end_pos": 18881554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094132.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094132.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079320.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079320.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQY9", "url": "https://www.uniprot.org/uniprotkb/F1RQY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A2A699-1", "protein_name": "Protein FAM171A2", "gene_name": "Fam171a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELIPLAAVSVHLLTGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPTSSGDPEAPPPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARTVEGAGLKSARSVEGPGGLEPSLDEYRRGPAGAAAFLHEPPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEGSAAGPARPFPQPDPQRPLMQGHAGAGGDSGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGSGGRSTDASLDSGVDVHEARPARRRLPREERERAQLPAPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "length": 822 }, "evidence": [ { "id": "F1RQY9", "url": "https://omabrowser.org/oma/group/F1RQY9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A8MVW0-1", "protein_name": "Protein FAM171A2", "gene_name": "FAM171A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPASGPSVLARLLPLLGLLLGSASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPLVQFQRRAARLPVSSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELMPLTAVSVHLLTGNGTEVPLSGPIHLSLPVPSETRALTVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTAGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDGNKRDQATSMSQLHLICGGPLEPAPSGDPEAPPPGPLHSAFSSSRDLASSRDDFFRTKPRSASRPAAEPSGARGGESAGLKGARSAEGPGGLEPGLEEHRRGPSGAAAFLHEPPSPPPPFDHYLGHKGAAEGKTPDFLLSQSVDQLARPPSLGQAGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEPAPPEGTAPGPARAFPQPDPQRPQMPGHSGPGGEGGGGGGEGWGAGRAAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGARSTDASLDSGVDVHEARPARRRPAREERERAPPAAPPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVAAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "length": 826 }, "evidence": [ { "id": "F1RQY9", "url": "https://omabrowser.org/oma/group/F1RQY9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZT47-1", "protein_name": "Family with sequence similarity 171, member A2", "gene_name": "Fam171a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVSSTYNQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELIPLTAVSVHLLTGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWVAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPTSSGDPEAPPPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARSVEGAGLKGARSVEGPGVLEPSLEEYRRGPAGAAAFLHEAPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEGSAAGPARPFPQPDPQRPLIQGHAGAGGDGGGGEGWGGGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGVDVHEARPARRRPPREERERAQPPAPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "length": 822 }, "evidence": [ { "id": "F1RQY9", "url": "https://omabrowser.org/oma/group/F1RQY9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNG6-1", "protein_name": "Family with sequence similarity 171 member A2", "gene_name": "FAM171A2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPPSGPSVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIKVQVYVSGELVPLARASVDVFGNRMLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGFLTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRAARLPVTSTYSQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELMPVAAVSVHLLAGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQLYWTFVSPQLGYWAAAMASPTAGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLCLLVYYCRRRCLKPRQQHRKLQLSGPSDGNKRDQATSMSQLHLICGGSLEPAPSGDPEAPPPGPLHSAFSSSRDLTGSRDDFFRAKPRSASRPAAEPTGARGGEGAGLKGARSVEGPAGLEPGLEEYRRGPPGTPAFLQEPPSPPPPFEHYLGHKGAAESKTPDFLLSQSVDQLARPPSLSQAGQLIFCGSIDHLKDSVYRNVMPTLVIPAHYVRLGGEAGATGAGEESAPPEGAAPGPARPFPQPDPQRPLMPGHSGAGGEGGGGGGGEGWGSGRSAPVSGSVTIPVLFNESTMAQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDASLDSGVDVHEARPARRRPLREERERAPATAPPAPPPPPPAPPRLALSEDTEPSSSESRTGLCSPEDNSLTPLLDEVAAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREERPLMVFNVK", "length": 831 }, "evidence": [ { "id": "F1RQY9", "url": "https://omabrowser.org/oma/group/F1RQY9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F078-1", "protein_name": "Protein FAM171A2", "gene_name": "fam171a2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRPQRASRFFALFLFLCSAWRSLAKSLPSPGPVEVLIKVQVFDNSDLSPLRESTVQVCGNQTILASNLVGEDGIVTLTFLYRPGTWVIVTASKHGFVTNSAPWHASRVPLYASVSLYLLPQRPATLLLYDDVVQLLLGSPGSRRQPWVQLQRRAIQPPLNNSQITLSAMLTSSRSQYELGGFPYPLAMDNNSTGTNSSWVELTALAAMCAQLTGPNGTEVQVSEPIHISIPLPSDSPLKTATSVPVWRFEDKTGLWVRSGAGYIKKEDTQMTWSFVAPKLGYWLAAFPSTSGSGLNTSGLRDITTYHTIFLLAILGAMALLVLILLCLLLYYCRRRCLKPRQHRRKMHLSSTLESSKRDQGTSTSHLNLISGGHMETASSTGDLNSSRDDFFKHGPTQRQHNSRTNADSKRGESFPLKATRSSNTGTRDLLLQDDYGKGYSSAEDSDDRKYNHHNAKDNQGYSSDPPSPPPLLPPFAGHYQDLNRDSKPPEYYASAGDHLNRPSSVNTQPGQLIFCHSMEQMKESMYHSMVPTLVIPAHYMHLSSDLTAVEQAMERQQQLQHDMEGIQVSMTLPRQQNQKQQQQQARADNEEEESGKQADGSSEENWGSDQSSAPVRIPVLFNDSTIAQMNGELQAMTEKKLLELGVKPHPRAWFVSLDGRSNSLVRHSYIELSNEALRPPMGACNQTLDQRTEAIPTNSGKPSHRKLKEDGKVKEGGERKAHGKIYSKLPVIETPDSSSESHSAMYSPEENSTAPLLDETAEVSKGGTFPRKGRSRDNSTRSSASEVHRDSVTSPDDDNDDKDDDGENKKSPWQKREERPLMVFNVK", "length": 828 }, "evidence": [ { "id": "F1RQY9", "url": "https://omabrowser.org/oma/group/F1RQY9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RQY9", "url": "https://www.uniprot.org/uniprotkb/F1RQY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 624, "end_pos": 626, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RQY9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 832, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RQY9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RQY9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RQY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQY9" }, { "id": "PF20771", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20771" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM171 C-terminal", "eco_id": "ECO_0000259", "start_pos": 382, "end_pos": 830, "start_aa": "Leu", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RQY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RQY9" }, { "id": "PF10577", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10577" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM171 N-terminal", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 295, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 221, "end_pos": 223 }, { "start_pos": 265, "end_pos": 267 }, { "start_pos": 624, "end_pos": 626 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RR01", "url": "https://www.uniprot.org/uniprotkb/F1RR01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR01-1", "url": "https://www.uniprot.org/uniprotkb/F1RR01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPAHTTVLLWVWGSLQAFEIVEKENIFQRTPCPAFLMFDNAAYLADMSFELPCHCKPEEVAAVVWYYQKHLGSSHTKVLTDFDGRVLTEAAQVRVGSDMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSGEGMVATFKDQGQEPFADEYHGSLRVFTTFWEWTPCDRCGVRGEQWRIGLCYLQSPDLSPRYRRTLPDVVSCGSRAVPRPLRAKVSDHTPELLVRSCLVPCETTKIQKGVMAIFNYVSKVGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDRQYLYRTQYLRGVNRSMRVFIDHGNHLHIRFTQLEDRGIYYCWRQGERIAGFRLGVTQRGRYPASFSDPETRAALRLTLIGYLLITAVFVTVHLCRCCCHLFRCWPDLSP", "length": 413, "header": "tr|F1RR01-1|F1RR01_PIG Isoform 1 of Family with sequence similarity 187 member A OS=Sus scrofa OX=9823 GN=FAM187A PE=3 SV=1 CANONICAL=F1RR01-1" }, "isoforms": [ { "isoform_ac": "F1RR01-1", "url": "https://www.uniprot.org/uniprotkb/F1RR01/entry", "sequence": { "sequence": "MNPAHTTVLLWVWGSLQAFEIVEKENIFQRTPCPAFLMFDNAAYLADMSFELPCHCKPEEVAAVVWYYQKHLGSSHTKVLTDFDGRVLTEAAQVRVGSDMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSGEGMVATFKDQGQEPFADEYHGSLRVFTTFWEWTPCDRCGVRGEQWRIGLCYLQSPDLSPRYRRTLPDVVSCGSRAVPRPLRAKVSDHTPELLVRSCLVPCETTKIQKGVMAIFNYVSKVGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDRQYLYRTQYLRGVNRSMRVFIDHGNHLHIRFTQLEDRGIYYCWRQGERIAGFRLGVTQRGRYPASFSDPETRAALRLTLIGYLLITAVFVTVHLCRCCCHLFRCWPDLSP", "length": 413, "header": "tr|F1RR01-1|F1RR01_PIG Isoform 1 of Family with sequence similarity 187 member A OS=Sus scrofa OX=9823 GN=FAM187A PE=3 SV=1 CANONICAL=F1RR01-1" }, "locus": { "chromosome": "12", "start_pos": 18468864, "end_pos": 18467626, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018880.5", "url": 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"https://www.uniprot.org/uniprotkb/F1RR01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165039", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165039", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AB13-1", "protein_name": "Family with sequence similarity 187 member A", "gene_name": "FAM187A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEMGLLGAVLLLCMADVLHSFAIEEKEDIFRRMVCPAFLMFDNAAYLADMTFELPCNCKPEEVSNVVWYFQKNMGGHETTVLTDFSGNMVLDSGHIHVGSDVLKRFTIRMFSLIIFRAQVSDSGHYMCGTKKGDFFYGYDVDVQPTKHITVAFLDIGQHVQDDYTGKAFSLFTTFWDWTKCDRCGVRGEQRRIGLCYVQSARLHPRYRTVLPNVTSCGSRAVPARLQRSGRRWKPEVAVRSCMAPCPQENNPQEGVQAISNVIYKLGQKPWLPRVPTQFYRHPLGRDLVIACPGARPEHAVAWDKGSVRLYRSRYLVGVNKTMRVFIDHGNHLHIRRVRFSDRGTYFCWREGKLAAGLRLRVSYEAQRRRSLDDPETIYIIKAIGVSYVLVGAIFIGVHLCRCCSRVLRYSVRV", "length": 414 }, "evidence": [ { "id": "F1RR01", "url": "https://omabrowser.org/oma/group/F1RR01/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7H366-1", "protein_name": "Ig-like V-type domain-containing protein FAM187A", "gene_name": "Fam187a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSLAHTTVLLWAWGSLQAFEIVEKENIFQKTPCPAFLMFDNAAYLADMSFELPCHCKPEDVSAVVWYYQKHLGSSHTTVLTDFDGRLLTEAAHVRAGSSMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSSEGMVATFKDRGQEPLPDEYFGSLHVFTTFWEWTPCDRCGVHGEQWRLGLCYLQNPDLSPRYLKTLPDVVSCGSRAVPRKLWIRTRYHTPELLIQSCLVSCEKRNQIRKGMLTIYNYVSKMGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDRQPLYRTQYLKGVNRSMRVFIDHGNHLHIRFTQLSDRGIYYCWRQGLRIAGFRLGVTSRGRYPASLSDPETRSAVELTLIGYLLITAIFVTIHVCRCCCYSFRCCPNFSTHALLQL", "length": 420 }, "evidence": [ { "id": "F1RR01", "url": "https://omabrowser.org/oma/group/F1RR01/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A7E3C4-1", "protein_name": "Ig-like V-type domain-containing protein FAM187A", "gene_name": "FAM187A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLAHTTVLLWAWGSLQAFEIVEKENIFQRTPCPAFLMFDNAAYLTDMSFELPCPCKPEEVSAVVWYYQKHLGSSHTKVLTDFDGRVLTEAAQVRVGSDMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSSEGMVATFKDQGQEPLEDEYHGSLRVFTTFWEWTPCDRCGVRGEQWRIGLCYLQSPDLSPRYRKILPNVVSCGSRAVPRQLRAKASDHNPELLVRSCLMPCEKKKKVQEGVMAIFNYVSKVGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDHQYLYRTQYLKGVNGSMRVFIDHGNHLHIRFTQLEDRGIYYCWRQGERIAGFRLGVTSPGRYPVSFSDPETRAALGLILIGYMLITVIFISIHLCRCCCYLFRFCPNFSPRLSRPQL", "length": 421 }, "evidence": [ { "id": "F1RR01", "url": "https://omabrowser.org/oma/group/F1RR01/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AXV7-1", "protein_name": "Ig-like V-type domain-containing protein FAM187A", "gene_name": "Fam187a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"url": "https://alphafold.ebi.ac.uk/entry/F1RR05", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017340", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017340", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02022", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02022", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521290", "url": "https://www.ncbi.nlm.nih.gov/gene/100521290", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521290", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521290", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQMDIEQ", "url": "https://omabrowser.org/oma/group/CQMDIEQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RR05", "url": "https://www.orthodb.org/?gene=F1RR05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10695", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10695", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10695:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10695:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01121", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01121", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196783", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AUK1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6E6", "url": "https://www.uniprot.org/uniprotkb/A0A287B6E6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B6E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6E6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR05", "url": "https://www.uniprot.org/uniprotkb/F1RR05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR05-1", "url": "https://www.uniprot.org/uniprotkb/F1RR05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLVGLTGGIASGKSSVLQVLQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLENGDIDRKALGDLIFNQPDRRHLLNAITHPEICREMTKETFKYFLRGYRYVILDVPLLFETKKLLKYMKHTVVVYCDRDTQLARLMQRNNLKQEDAEARIKAQLPLEDKARMARHVLDNSGEWSVTKRQVVLLHAELERSLEYLPLRLGVLAGLAGIVSLLYLLTHYLLASL", "length": 231, "header": "tr|F1RR05-1|F1RR05_PIG Isoform 1 of Dephospho-CoA kinase domain-containing protein OS=Sus scrofa OX=9823 GN=DCAKD PE=1 SV=1 CANONICAL=F1RR05-1" }, "isoforms": [ { "isoform_ac": "A0A287AUK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUK1/entry", "sequence": { "sequence": "MFLVGLTGGIASGKSSVLQVLQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLENGDIDRKALGDLIFNQPDRRHLLNAITHPEICREMTKETFKYFLRGYRYVILDVPLLFETKKLLKYMKHTVVVYCDRDTQLARLMQRNNLKQEDAEARIKAQLPLEDKARMARHVLDNSGEWSVTKRQLDPQGGKFLRGWDPERMRPVLSHPRSPSLQEQAQNRVHEGP", "length": 229, "header": "tr|A0A287AUK1-1|A0A287AUK1_PIG Computationally mapped isoform of Dephospho-CoA kinase domain-containing protein OS=Sus scrofa OX=9823 GN=DCAKD PE=1 SV=1 CANONICAL=F1RR05-1" }, "locus": { "chromosome": "12", "start_pos": 18363086, "end_pos": 18355277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038855.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038855.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047609.1" } ] } }, { "isoform_ac": "A0A287B6E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B6E6/entry", "sequence": { "sequence": "MFLVGLTGGIASGKSSVLQVLQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLENGDIDRKALGDLIFNQPDRRHLLNAITHPEICREMTKETFKYFLRGYRYVILDVPLLFETKKLLKYMKHTVVVYCDRDTQLARLMQRNNLKQEDAEARIKAQLPLEDKARMARHVLDNSGEWSVTKRQLDPQGGKFLRGWDPERMRPVLSHPRSTYTLNPDRALPRADPCLEGEKQPSVSSYTFPPSPGPSLQEQAQNRVHEGP", "length": 264, "header": "tr|A0A287B6E6-1|A0A287B6E6_PIG Computationally mapped isoform of Dephospho-CoA kinase domain-containing protein OS=Sus scrofa OX=9823 GN=DCAKD PE=1 SV=1 CANONICAL=F1RR05-1" }, "locus": { "chromosome": "12", "start_pos": 18363086, "end_pos": 18355277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043360.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043360.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051876.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051876.1" } ] } }, { "isoform_ac": "F1RR05-1", "url": "https://www.uniprot.org/uniprotkb/F1RR05/entry", "sequence": { "sequence": "MFLVGLTGGIASGKSSVLQVLQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLENGDIDRKALGDLIFNQPDRRHLLNAITHPEICREMTKETFKYFLRGYRYVILDVPLLFETKKLLKYMKHTVVVYCDRDTQLARLMQRNNLKQEDAEARIKAQLPLEDKARMARHVLDNSGEWSVTKRQVVLLHAELERSLEYLPLRLGVLAGLAGIVSLLYLLTHYLLASL", "length": 231, "header": "tr|F1RR05-1|F1RR05_PIG Isoform 1 of Dephospho-CoA kinase domain-containing protein OS=Sus scrofa OX=9823 GN=DCAKD PE=1 SV=1 CANONICAL=F1RR05-1" }, "locus": { "chromosome": "12", "start_pos": 18362855, "end_pos": 18355277, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018876.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018876.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018372.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018372.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RR05", "url": "https://www.uniprot.org/uniprotkb/F1RR05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521290", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521290", "resource": "KEGG Pathway" }, { "id": "R-SSC-196783", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "resource": "Reactome", "description": "Coenzyme A biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P2N1-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "DCAKD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFLVGLSGGIASGKSTVVAVLRELGCAVIDADVIAREVVQPRLKAYQQIVRYFGPEILLESGEINREALGSIIFSQPEKRRLLNAITHPEIQKEMLKQVLKYFVLGYRYVILDIPLLFETKRLTKFMKHTILVYCDPQTQLARLRKRSGLSQAEAEARIASQLPLDEKRRMATHVIDNSGDRESTRQQVLRLHARLEGSLDFLWARLAVGTAVAALGGLLYILLQHFIS", "length": 229 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HLM0-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "Dcakd", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVIARHVVQPGYPAHRRIVQAFGTEVLLENGDIDRKVLGDLIFNQPDRRQLLNSITHPEIRKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQLARLMKRNSLKREDAEARVNAQLPLKDKARMANHVLDNSGEWSLTRRQVILLHAKLERSMEYLPLRLGFLTGLAGIASLLYLLTRYLLPSP", "length": 231 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q03941-1", "protein_name": "Dephospho-CoA kinase CAB5", "gene_name": "CAB5", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLVVGLTGGIACGKSTVSRRLRDKYKLPIVDADKIARQVVEPGQNAYDQIVLYFKDKIPNLLLEDGHLNREALGKWVFSHKEDLQALNGITHPAIRYAMFKEIGYYYLKGYRMCVLDVPLLFEGNLDSICGVTVSVICTQELQLERLMTRNPELSEEDAKNRLNSQMSTEERMARSDYILQNNSTLVDLYEQIESVVKKIQPSKLRTVLEYFPPFGAVSASSIVMSRLLMKKLQNKKSSAV", "length": 241 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0P4C4-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "dcakd", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFLVGLTGGIASGKSTVSSQLKELGCPVIDADVVARKVVEPQTAAYRLIVRHFGQEVLSENGEIDRKKLGQIIFSSPEKRRLLNSITHPEIHKEMLKQILLYFIKGYRYVILNVPLLFETRRLTRFLTHTVVVYCDPATQLSRLMQRDALSQTEAEQRISAQMPLKEKRGLANHVIENSGSREDTHRQVLRLHSKLDDCMQFLIIRAVAVAALTGLGGLFIYTVKIITS", "length": 229 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3ZBS0-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "DCAKD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFLVGLTGGIASGKSSVIQVFQQLGCAVIDVDIIARHIVQPGYPAHRRIVEAFGTEVLLENGDIDRKVLGDLIFNQPDRRHLLNSITHPEICKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQLARLMRRNNLSREDAEARIKAQLPLKDKARMARHVLDNSGEWSVTKRQVVLLHAELEHSLEYLPLRLGVLTGLAGIVGLLYLLTHYLLPSP", "length": 231 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AY55-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "Dcakd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVIARHIVQPGCPAHRRIVEAFGTEVLLENGDINRKVLGDLIFNQPDRRQLLNSITHPEIRKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQLARLMKRNNLNREDAEARINSQLPLKDKARMANHVLDNSGEWSLTRRQVILLHAKLERSMEYLPLRLGFLTGLAGIASLLYLLTRYLLPSPQLGNPGSKP", "length": 240 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHC4-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "Dcakd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVIARHVVQPGYPAHRRIVEAFGTEVLLENGDIDRKVLGDLIFNQPDRRQLLNSITHPEIRKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQLARLMKRNNLNREDAEARINAQLPLKDKARMANHVLDNSGEWSLTRRQAILLHAKLERSMEYLPLRLGFLTGLAGIASLLYLLTRYLLPSP", "length": 231 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WVC6-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "DCAKD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLVGLTGGIASGKSSVIQVFQQLGCAVIDVDVMARHVVQPGYPAHRRIVEVFGTEVLLENGDINRKVLGDLIFNQPDRRQLLNAITHPEIRKEMMKETFKYFLRGYRYVILDIPLLFETKKLLKYMKHTVVVYCDRDTQLARLMRRNSLNRKDAEARINAQLPLTDKARMARHVLDNSGEWSVTKRQVILLHTELERSLEYLPLRFGVLTGLAAIASLLYLLTHYLLPYA", "length": 231 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VI57-1", "protein_name": "Dephospho-CoA kinase domain-containing protein", "gene_name": "Dpck", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIVAVTGGIATGKSTISKVFERQGIPVIDADKIAREIVEPGQPCWRQIREVFGDEVLLPSKEINRAVLGKMIFEDKELRGKLNKITHPTIHRKIFWQVCKLLVTGHAWIVLDLPLLFETGVLMDFIHKIVCVTCDSDKQLERLIARNELSESEARHRVDSQMPLDKKCEKSHFVIDNNGSVEEAESSAMSIYNLMRDSKQHWLNRISFLGLFLIVGFTIYMLLKVFNRLPESWQM", "length": 236 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9ZQH0-1", "protein_name": "Dephospho-CoA kinase", "gene_name": "COAE", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRIVGLTGGIASGKSTVSNLFKASGIPVVDADVVARDVLKKGSGGWKRVVAAFGEEILLPSGEVDRPKLGQIVFSSDSKRQLLNKLMAPYISSGIFWEILKQWASGAKVIVVDIPLLFEVKMDKWTKPIVVVWVSQETQLKRLMERDGLSEEDARNRVMAQMPLDSKRSKADVVIDNNGSLDDLHQQFEKVLIEIRRPLTWIEFWRSRQGAFSVLGSVILGLSVCKQLKIGS", "length": 232 }, "evidence": [ { "id": "F1RR05", "url": "https://omabrowser.org/oma/group/F1RR05/", "database": "OMA" } ], "glygen_name": "Arabidopsis", 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"id": "GO:0015937", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015937", "evidence": [ { "database": "UniProtKB", "id": "F1RR05", "url": "https://www.uniprot.org/uniprotkb/F1RR05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RR05-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 231, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RR05-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RR05" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], 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"categories": [ "Protein Classification", "Other" ] }, { "id": "F1RR11", "url": "https://www.uniprot.org/uniprotkb/F1RR11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR11-1", "url": "https://www.uniprot.org/uniprotkb/F1RR11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METGCWLLGGEFEDSVFEERRERQLGPPSSYIAKRCEPQWFYEDSGSSDDVEALTIQKFKGDLAYRRQEYQKALQEYSSISEKLPSTNFAMKRDVQEGQARCLVHLGRHEEALEIATNLENKATNTDHLTTVLYLQFAICSSLQNLEKTIFCLQKLISLHPFNPWNWGKLAEAYLNRGLALSASFASSQEQNTLSDKTLKSCFPHLRKDCLLCFPEMSSVFSVEASSGDNQKNEKALKNIQNRVAEERAAVLLPETQMKACASFIRTRLLLQLAQSQQTSFALEKNLRTQQEIEDKMKGFSFKEDTLLLIAEVMGEDIVPEKIRDEVHTEVKCVGPEALSALVIASSKEFEDRWFRKIKDHFCPSENHFHTEIKILV", "length": 377, "header": "tr|F1RR11-1|F1RR11_PIG Isoform 1 of Chromosome 8 open reading frame 76 OS=Sus scrofa OX=9823 GN=C8orf76 PE=4 SV=1 CANONICAL=F1RR11-1" }, "isoforms": [ { "isoform_ac": "F1RR11-1", "url": "https://www.uniprot.org/uniprotkb/F1RR11/entry", "sequence": { "sequence": "METGCWLLGGEFEDSVFEERRERQLGPPSSYIAKRCEPQWFYEDSGSSDDVEALTIQKFKGDLAYRRQEYQKALQEYSSISEKLPSTNFAMKRDVQEGQARCLVHLGRHEEALEIATNLENKATNTDHLTTVLYLQFAICSSLQNLEKTIFCLQKLISLHPFNPWNWGKLAEAYLNRGLALSASFASSQEQNTLSDKTLKSCFPHLRKDCLLCFPEMSSVFSVEASSGDNQKNEKALKNIQNRVAEERAAVLLPETQMKACASFIRTRLLLQLAQSQQTSFALEKNLRTQQEIEDKMKGFSFKEDTLLLIAEVMGEDIVPEKIRDEVHTEVKCVGPEALSALVIASSKEFEDRWFRKIKDHFCPSENHFHTEIKILV", "length": 377, "header": "tr|F1RR11-1|F1RR11_PIG Isoform 1 of Chromosome 8 open reading frame 76 OS=Sus scrofa OX=9823 GN=C8orf76 PE=4 SV=1 CANONICAL=F1RR11-1" }, "locus": { "chromosome": "4", "start_pos": 16158134, "end_pos": 16137216, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024326.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024326.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019532.1", "url": "https://www.ensembl.org/id/ENSSSCP00000019532.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RR11", "url": "https://www.uniprot.org/uniprotkb/F1RR11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517937", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517937", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E9QFC8-1", "protein_name": "Uncharacterized protein C8orf76 homolog", "gene_name": "", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMEILGSTFDDSVFEESRDRRVSTALPTYQPKICEPLWFCEDGNEEESLEEQKTLKFRGDLAYRRKQYQIALDDYASCLSLVPAGNTSVKRDVLEGIARCCCHLGKKDEALNACEKLRTDVSNTCHLTCVLQLELSVHEHYRDLTSSISSLQQLCCLHPYHPWHWLNLATSFQRLLESDNHPETSSAEEKPEKQQETKNILRLKTIMGLIRTRMLIEILRVQQFSFVLENSLRALQDIEEALHVLQPTEKILQMVSEVMAEDLNPEKMREETQDGESLSGLCVKDFDERWWNKLHSKLQEDTTALPFHTNLQEIYQ", "length": 316 }, "evidence": [ { "id": "F1RR11", "url": "https://omabrowser.org/oma/group/F1RR11/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MTW0-1", "protein_name": "Chromosome 14 C8orf76 homolog", "gene_name": "C14H8orf76", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METGCWLLGGEFEDSVFEERRERRPGPPESYRAKRCEPQWFYEETGSSDDVEALTVQKFKGDLAYRRQEYQKALQEYSSISEKLPSTNFAMKRDVQEGQARCLVHLGRHKEALEIATNLENKATNTDHLTTVLYLQFTICSSLQNLEKTIFCLQKLISLHPFNPWNWGRLGEAYLNLGPVLSASLASSQKENSFTSSDTAIKSSFPHSGKDCLLCFPETLPEGSVEVSSGNKQRNEKALKNIQNRMTEERAAVLLETQMKACASFIRTRLLLQLAQCQQTSFALERNLKTQQEIEDKMKRFSFKEDTLLLIAEVMGEDIVPEKIRDEVHTEVKCVGPAALTALVIGSSKEFEDKWFRKIKDHFCPFENQFHTEIQILP", "length": 378 }, "evidence": [ { "id": "F1RR11", "url": "https://omabrowser.org/oma/group/F1RR11/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5BK24-1", "protein_name": "Uncharacterized protein C8orf76 homolog", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"METGCWVLGGEFEDSVFEQRPERRPEPPSPYRAKLCEPQWFYEETECSDDIEVLTLKKFRGDLAYRRQEYEKALQEYSSISEQLPSTNFAMKRDVQEGQARCLAHLGRHEEALEMAADLESKATNTDHLTVVLHLHLAVFSSLQSREHTILCLHKLIALHPLNPWSWCKLAEAYLSPGPGLPAGVSPQGQKSSASSDKAVGPSSVHSGTGSLLSLPTTLPENALLSVEASGSAQENMPSLARRREEAQMEARRKACASLLRARLLLQLAQSQQTSFALEKNLRTQQEIAGKVKDFNFREDTLLLMEEAMGEDIVPEKIKEELHSEVKCVGPGALTAMVVASSKEFEDKWFRKIKDHFCPLGNQFHVEVEIIA", "length": 372 }, "evidence": [ { "id": "F1RR11", "url": "https://omabrowser.org/oma/group/F1RR11/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RR11-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 377, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": 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} ], "function": [ { "annotation": "Rho GTPase-activating protein which may be involved in clathrin-mediated endocytosis. 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"Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23176:SF104", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23176:SF104", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B2D9", "url": "https://www.uniprot.org/uniprotkb/A0A287B2D9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B2D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2D9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RR27-1", "url": "https://www.uniprot.org/uniprotkb/F1RR27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAADVEGDVYVLVEHPFEYTGKDGRRVAIRPNERYRLLRRSTEHWWHVRSEPGGRPFYLPAQYVRELPALGHPATPPHAPLPGPTASEPLAYDYRFVSASAPAGPDGTPAEPRDRAGSLCSLARGRNVTQRRSLAPGLPACLYTRPTAPVRPAQSLDDLARTAVPPAGLLGSRGSFKACSVAGSWVCPRPLARSDSENVYEAIQDVRGQPREQHPKQADDPPEPVYVNLERQPRATSPRATAAPLPSPVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVGSHESLETEWGQYWDEESRRVFFYNPLTGETAWEDESEDQPEDELEMQPGLSPGSPRDQRPPTPEADYPESLTSYPEEDYSPVGSFSEPGPTSPLVIPPGWSCHVSPDGQTLYTNNFTQEQWVRLEDQLGKPYFYNTDDASVQWELPQVPVPAPRSIRKSSQDSETPAQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLTWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQELSADLPPEEESESSAVFGSSERLGSCREDEARPGAGVPGGLESDVSKVRYKLRKFLLRRPTLQSLREKGYIKDQVFGCALAVLCERERSSVPRFVQQCIRAVEARGLEIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFCYFRQFITAIKLQDQAQRSRCVRDLVRSLPAPNHDTLRLLIQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPETEETSMPMTMVFQNQVVELILQQCADIFPPH", "length": 859, "header": "tr|F1RR27-1|F1RR27_PIG Isoform 1 of Rho GTPase-activating protein 27 OS=Sus scrofa OX=9823 GN=ARHGAP27 PE=4 SV=4 CANONICAL=F1RR27-1" }, "isoforms": [ { "isoform_ac": "A0A287B2D9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B2D9/entry", "sequence": { "sequence": "MVDMIAKLTRRQSRGLQRQADDPPEPVYVNLERQPRATSPRATAAPLPSPVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVGSHESLETEWGQYWDEESRRVFFYNPLTGETAWEDESEDQPEDELEMQPGLSPGSPRDQRPPTPEADYPESLTSYPEEDYSPVGSFSEPGPTSPLVIPPGWSCHVSPDGQTLYTNNFTQEQWVRLEDQLGKPYFYNTDDASVQWELPQVPVPAPRSIRKSSQDSETPAQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLTWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQELSADLPPEEESESSAVFGSSERLGSCREDEARPGAGVPGGLESDVSKVRYKLRKFLLRRPTLQSLREKGYIKDQVFGCALAVLCERERSSVPRFVQQCIRAVEARGLEIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFCYFRQFITAIKLQDQAQRSRCVRDLVRSLPAPNHDTLRLLIQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPETEETSMPMTMVFQNQVVELILQQCADIFPPH", "length": 661, "header": "tr|A0A287B2D9-1|A0A287B2D9_PIG Computationally mapped isoform of Rho GTPase-activating protein 27 OS=Sus scrofa OX=9823 GN=ARHGAP27 PE=4 SV=2 CANONICAL=F1RR27-1" }, "locus": { "chromosome": "12", "start_pos": 18068572, "end_pos": 18056415, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043205.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043205.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050413.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050413.2" } ] } }, { "isoform_ac": "F1RR27-1", "url": "https://www.uniprot.org/uniprotkb/F1RR27/entry", "sequence": { "sequence": "MAADVEGDVYVLVEHPFEYTGKDGRRVAIRPNERYRLLRRSTEHWWHVRSEPGGRPFYLPAQYVRELPALGHPATPPHAPLPGPTASEPLAYDYRFVSASAPAGPDGTPAEPRDRAGSLCSLARGRNVTQRRSLAPGLPACLYTRPTAPVRPAQSLDDLARTAVPPAGLLGSRGSFKACSVAGSWVCPRPLARSDSENVYEAIQDVRGQPREQHPKQADDPPEPVYVNLERQPRATSPRATAAPLPSPVWETHTDAGTGRPYYYNPDTGVTTWESPFEAAEGAASPATSPASVGSHESLETEWGQYWDEESRRVFFYNPLTGETAWEDESEDQPEDELEMQPGLSPGSPRDQRPPTPEADYPESLTSYPEEDYSPVGSFSEPGPTSPLVIPPGWSCHVSPDGQTLYTNNFTQEQWVRLEDQLGKPYFYNTDDASVQWELPQVPVPAPRSIRKSSQDSETPAQASPPEEKIKTLDKAGVLHRTKTVDKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKLSTPEYTVELKGASLTWAPKDKSSKKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQELSADLPPEEESESSAVFGSSERLGSCREDEARPGAGVPGGLESDVSKVRYKLRKFLLRRPTLQSLREKGYIKDQVFGCALAVLCERERSSVPRFVQQCIRAVEARGLEIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFCYFRQFITAIKLQDQAQRSRCVRDLVRSLPAPNHDTLRLLIQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPETEETSMPMTMVFQNQVVELILQQCADIFPPH", "length": 859, "header": "tr|F1RR27-1|F1RR27_PIG Isoform 1 of Rho GTPase-activating protein 27 OS=Sus scrofa OX=9823 GN=ARHGAP27 PE=4 SV=4 CANONICAL=F1RR27-1" }, "locus": { "chromosome": "12", "start_pos": 18068572, "end_pos": 18039902, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018864.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018864.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018360.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018360.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 108, "start_aa": "Thr", "end_pos": 108, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr108", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 385, "start_aa": "Thr", "end_pos": 385, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr385", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 85, "start_aa": "Thr", "end_pos": 85, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1RR27", "url": "https://www.uniprot.org/uniprotkb/F1RR27" } ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31475:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31475:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003129240", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129240", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RRC4", "url": "https://www.uniprot.org/uniprotkb/F1RRC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRC4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFKIEHTWDSFPVKHEPVFVRLNPGDRGVMMEVSAPFFNDPPAPLGEPGKPFNELWDYEVVEAFFLNDMTEQYLEVELCPHGQHLVLLLSGRRNVWKQELDLSFKVYRGETKWEGRAYLPWSYFPPNVTKFNSFAIHGSKDKRSYEALYPVPQHEIQQGQKPDFHRLEYFKPFSFNVLLGEEWKQPESDLWLTEKPDV", "length": 199, "header": "tr|F1RRC4-1|F1RRC4_PIG Isoform 1 of Chromosome 4 open reading frame 33 OS=Sus scrofa OX=9823 GN=C4orf33 PE=3 SV=2 CANONICAL=F1RRC4-1" }, "isoforms": [ { "isoform_ac": "F1RRC4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRC4/entry", "sequence": { "sequence": "MDFKIEHTWDSFPVKHEPVFVRLNPGDRGVMMEVSAPFFNDPPAPLGEPGKPFNELWDYEVVEAFFLNDMTEQYLEVELCPHGQHLVLLLSGRRNVWKQELDLSFKVYRGETKWEGRAYLPWSYFPPNVTKFNSFAIHGSKDKRSYEALYPVPQHEIQQGQKPDFHRLEYFKPFSFNVLLGEEWKQPESDLWLTEKPDV", "length": 199, "header": "tr|F1RRC4-1|F1RRC4_PIG Isoform 1 of Chromosome 4 open reading frame 33 OS=Sus scrofa OX=9823 GN=C4orf33 PE=3 SV=2 CANONICAL=F1RRC4-1" }, "locus": { "chromosome": "8", "start_pos": 95939551, "end_pos": 95931180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104421.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104421.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075270.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075270.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRC4", "url": "https://www.uniprot.org/uniprotkb/F1RRC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061IGM6-1", "protein_name": "UPF0462 protein C4orf33 homolog isoform X1", "gene_name": 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CANONICAL=F1RRD9-1" }, "locus": { "chromosome": "13", "start_pos": 18423539, "end_pos": 18412455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012301.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012301.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011982.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011982.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., 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"MEAAAADWRVAPYRILYQTPDSLVYWTIACGGSRKEITEHWEWLEQNLLQTLSIFENENDITTFVRGKIQGIIAEYNKINDVKEDDDTEKFKEAIVKFHRLFGMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVIRWVDITQLEKNATLLLPDVIQVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPKLKRKSPKKVSALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNYICFTSKEENLCSLIIPLREVTIVEKADSSSVLPSPLSISTRNRMTFLFANLRDRDFLVQRISDFLQQTTSKIYSDKEFAGSYNSSDDEVYSRPSSLLSSSPQRSTSSDADGERQFNLNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKTRELVLKGVPESMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATEEIERDLHRSLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVALCERMLPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLFLSVMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLNCKDDGEAMTVLGRYLDSVTNKDSTLPPIPHLHSLLSDDVEPYPEVDIFRLIRTSYEKFGTIRADLIEQMRFKQRLKVIQTLEDTTKRNVVRTIVTETSFTIDELEELYALFKAEHLTSCYWGGSSNALDRHDPSLPYLEQYRIDFEQFKGMFVLLFPWACGTHSDVLASRLFQLLDENGDSLINFREFVSGLSAACHGDLTEKLKLLYKMHVLPEPSSDQDEPDSAFEATQYFFEDITPECTHVVGLDSRSKHSVDDGFVTVSLKPDRGKRANSQENRNYLRLWTPENKSKSKNAKDLPKLNQGQFIELCKTMYNMFSEDPNEQELYHATAAVTSLLLEIGEVGKLFAGQPTKEGGSGGSGPSCTQGIPAGMLFPKKGPGQPYGSESVEPLPASLAGDGEEHSLGGQMEDIKLEDSSPRDNGACSSMLISDDDTKDDSSMSSYSVLSAGSHEEDKLHCEDIGEDTVLVRSGQGTAALPRSTSLDRDWAITFEQFLASLLTEPALVKYFDKPVCMMARITSAKNIRLMGKPLTSASDYEISAVSG", "length": 1217, "header": "tr|A0A287AXS5-1|A0A287AXS5_PIG Computationally mapped isoform of TBC1 domain family member 9 OS=Sus scrofa OX=9823 GN=TBC1D9 PE=4 SV=1 CANONICAL=F1RRE5-1" }, "locus": { "chromosome": "8", "start_pos": 86516772, "end_pos": 86403817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065068.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065068.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048751.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048751.2" } ] } }, { "isoform_ac": "F1RRE5-1", "url": "https://www.uniprot.org/uniprotkb/F1RRE5/entry", "sequence": { "sequence": "MWVNPEEVLLANALWITERANPYFILQRRKGHAGDGGGGGGLAGLLVGTLDVVLDSSARVAPYRILYQTPDSLVYWTIACGGSRKEITEHWEWLEQNLLQTLSIFENENDITTFVRGKIQGIIAEYNKINDVKEDDDTEKFKEAIVKFHRLFGMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVIRWVDITQLEKNATLLLPDVIQVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPKLKRKSPKKVSALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNYICFTSKEENLCSLIIPLREVTIVEKADSSSVLPSPLSISTRNRMTFLFANLRDRDFLVQRISDFLQQTTSKIYSDKEFAGSYNSSDDEVYSRPSSLLSSSPQRSTSSDADGERQFNLNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWKIHFAEYGQGICMYRTEKTRELVLKGVPESMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATEEIERDLHRSLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVALCERMLPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLFLSVMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLNCKDDGEAMTVLGRYLDSVTNKDSTLPPIPHLHSLLSDDVEPYPEVDIFRLIRTSYEKFGTIRADLIEQMRFKQRLKVIQTLEDTTKRNVVRTIVTETSFTIDELEELYALFKAEHLTSCYWGGSSNALDRHDPSLPYLEQYRIDFEQFKGMFVLLFPWACGTHSDVLASRLFQLLDENGDSLINFREFVSGLSAACHGDLTEKLKLLYKMHVLPEPSSDQDEPDSAFEATQYFFEDITPECTHGKRANSQENRNYLRLWTPENKSKSKNAKDLPKLNQGQFIELCKTMYNMFSEDPNEQELYHATAAVTSLLLEIGEVGKLFAGQPTKEGGSGGSGPSCTQGIPAGMLFPKKGPGQPYGSESVEPLPASLAGDGEEHSLGGQMEDIKLEDSSPRDNGACSSMLISDDDTKDDSSMSSYSVLSAGSHEEDKLHCEDIGEDTVLVRSGQGTAALPRSTSLDRDWAITFEQFLASLLTEPALVKYFDKPVCMMARITSAKNIRLMGKPLTSASDYEISAVSG", "length": 1242, "header": "tr|F1RRE5-1|F1RRE5_PIG Isoform 1 of TBC1 domain family member 9 OS=Sus scrofa OX=9823 GN=TBC1D9 PE=4 SV=3 CANONICAL=F1RRE5-1" }, "locus": { "chromosome": "8", "start_pos": 86516772, "end_pos": 86403714, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009921.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009921.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009666.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009666.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRE5", "url": "https://www.uniprot.org/uniprotkb/F1RRE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1RRE5", "url": "https://www.uniprot.org/uniprotkb/F1RRE5" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1RRE5", "url": "https://www.uniprot.org/uniprotkb/F1RRE5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "system process", "id": "GO:0003008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003008", "evidence": [ { "database": "UniProtKB", "id": "F1RRE5", "url": "https://www.uniprot.org/uniprotkb/F1RRE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 986, "end_pos": 988, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RRE5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1242, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RRE5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RRE5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RRE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRE5" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 886, "end_pos": 921, "start_aa": "His", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RRE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRE5" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 515, "end_pos": 702, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 212, "end_pos": 214 }, { "start_pos": 239, "end_pos": 241 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 986, "end_pos": 988 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RRG5-1", "uniprot_ac": "F1RRG5", "uniprot_id": "F1RRG5_PIG", "mass": { "chemical_mass": 105018.0, "monoisotopic_mass": 105018.0 }, "refseq": { "ac": "XP_003129226", "name": "type II inositol 3,4-bisphosphate 4-phosphatase isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129226" }, "gene_names": [ { "name": "INPP4B", "type": "recommended", "evidence": [ { "id": "F1RRG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRG5" } ] }, { "name": "INPP4B", "type": "synonym", "evidence": [ { "id": "XP_003129226", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129226" } ] } ], "protein_names": [ { "name": "phosphatidylinositol-3,4-bisphosphate 4-phosphatase", "type": "recommended", "evidence": [ { "id": "F1RRG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRG5/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.66", "type": "synonym", "evidence": [ { "id": "F1RRG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRG5/entry#names_and_taxonomy" } ] }, { "name": "type II inositol 3,4-bisphosphate 4-phosphatase isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003129226", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129226" } ] } ], "function": [], 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"100511393", "url": "https://www.ncbi.nlm.nih.gov/gene/100511393", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511393", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511393", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSHRMAQ", "url": "https://omabrowser.org/oma/group/CSHRMAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BHL1", "url": "https://www.orthodb.org/?gene=A0A287BHL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RRG5", "url": "https://www.orthodb.org/?gene=F1RRG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12187", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12187", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12187:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12187:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660499", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660499", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1660516", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660516", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855183", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855183", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003129226", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129226", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "43388", "url": "https://www.rhea-db.org/rhea/43388", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BHL1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRG5", "url": "https://www.uniprot.org/uniprotkb/F1RRG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRG5-1", "url": "https://www.uniprot.org/uniprotkb/F1RRG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIKEEGTSEEGQHFLPAPQANDTGDFQFTSIQKTPDEPQLEFILACKDLVAPVRDRKLNTLVQIAVVHPAEQSLTRYSCTEIVEGTRDPLFLTGVTFPSEYPIYEETKIKLTVYDVKDKSHDTVRTSVLPEHKDPLPEVGRSFLGYASFKVGELLKSKEQVLALSLRTSDGGKVVGTIEVSVVKMGEIEDGEADHITTDVQGQKCALVCECTAPESVSRKDNLPFLNAVLKNPVYKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLQIKEDLCRNQELKELGELSPHWDNLRKNVLTHCDQMVNMYQDILTELSKETGSSFKSSSSKGEKSLEFVPVNLHLQRMHVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTEYQFIYYSPENTAKAKEVLSNINQLQPLIATHADLLLNSASQRSPDSLKNSLKMLSEKTELFVHAFKDQLVRSALLALYTARPGGVLKKPPSPKNSTEESSSQDPPPPMRRQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAMVDKLIERDGFSEGSSSSKDGEKDPSLVDSTITHPKEDWYEQLYPLILTLKDCMGEVVHRAKQSLTFVLLQELAYSLPQCLMLTLRRDVVFSQALAGLVCGFVIKLHTSLYDPGFLEQLHTVGLIAQYEGLLSTYSDEIGMLEDMAVGISDLKKVAFKIIEAKSNDVLPVITGRREHYVVEVKLPARLFESLPLQIKEGQLLRVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELLKEYCTVFMEKMPPDYISHFQEQNDLKGLLENLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRREGCRIENVLKNIKCRKYAFNMLQLMAFPKYYRPPEGTYGKADT", "length": 924, "header": "tr|F1RRG5-1|F1RRG5_PIG Isoform 1 of phosphatidylinositol-3,4-bisphosphate 4-phosphatase OS=Sus scrofa OX=9823 GN=INPP4B PE=1 SV=3 CANONICAL=F1RRG5-1" }, "isoforms": [ { "isoform_ac": "A0A287BHL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHL1/entry", "sequence": { "sequence": "MEIKEEGTSEEGQHFLPAPQANDTGDFQFTSIQKTPDEPQLEFILACKDLVAPVRDRKLNTLVQIAVVHPAEQSLTRYSCTEIVEGTRDPLFLTGVTFPSEYPIYEETKIKLTVYDVKDKSHDTVRTSVLPEHKDPLPEVGRSFLGYASFKVGELLKSKEQVLALSLRTSDGGKVVGTIEVSVVKMGEIEDGEADHITTDVQGQKCALVCECTAPESVSRKDNLPFLNAVLKNPVYKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLQIKEDLCRNQELKELGELSPHWDNLRKNVLTHCDQMVNMYQDILTELSKETGSSFKSSSSKGEKSLEFVPVNLHLQRMHVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTEYQFIYYSPENTAKAKEVLSNINQLQPLIATHADLLLNSASQRSPDSLKNSLKMLSEKTELFVHAFKDQLVRSALLALYTARPGGVLKKPPSPKNSTEESSSQDPPPPMRRQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAMVDKLIERDGFSEGSSSSKDGEKDPSLVDSTITHPKEDWYEQLYPLILTLKDCMGEVVHRAKQSLTFVLLQELAYSLPQCLMLTLRRDVVFSQALAGLVCGFVIKLHTSLYDPGFLEQLHTVGLIAQYEGLLSTYSDEIGMLEDMAVGISDLKKVAFKIIEAKSNDVLPVITGRREHYVVEVKLPARLFESLPLQIKEGQLLRVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELLKEYCTVFMEKMPPDYISHFQEQNDLKGLLENLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRSRQTQGALNESDDPETGCLTDNKPTSRHFYPVALLLVSSHLLVVWLILSLALLLAKYQ", "length": 938, "header": "tr|A0A287BHL1-1|A0A287BHL1_PIG Computationally mapped isoform of phosphatidylinositol-3,4-bisphosphate 4-phosphatase OS=Sus scrofa OX=9823 GN=INPP4B PE=1 SV=1 CANONICAL=F1RRG5-1" }, "locus": { "chromosome": "8", "start_pos": 85512946, "end_pos": 85167603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053332.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053332.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055851.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055851.1" } ] } }, { "isoform_ac": "F1RRG5-1", "url": "https://www.uniprot.org/uniprotkb/F1RRG5/entry", "sequence": { "sequence": "MEIKEEGTSEEGQHFLPAPQANDTGDFQFTSIQKTPDEPQLEFILACKDLVAPVRDRKLNTLVQIAVVHPAEQSLTRYSCTEIVEGTRDPLFLTGVTFPSEYPIYEETKIKLTVYDVKDKSHDTVRTSVLPEHKDPLPEVGRSFLGYASFKVGELLKSKEQVLALSLRTSDGGKVVGTIEVSVVKMGEIEDGEADHITTDVQGQKCALVCECTAPESVSRKDNLPFLNAVLKNPVYKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLQIKEDLCRNQELKELGELSPHWDNLRKNVLTHCDQMVNMYQDILTELSKETGSSFKSSSSKGEKSLEFVPVNLHLQRMHVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTEYQFIYYSPENTAKAKEVLSNINQLQPLIATHADLLLNSASQRSPDSLKNSLKMLSEKTELFVHAFKDQLVRSALLALYTARPGGVLKKPPSPKNSTEESSSQDPPPPMRRQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAMVDKLIERDGFSEGSSSSKDGEKDPSLVDSTITHPKEDWYEQLYPLILTLKDCMGEVVHRAKQSLTFVLLQELAYSLPQCLMLTLRRDVVFSQALAGLVCGFVIKLHTSLYDPGFLEQLHTVGLIAQYEGLLSTYSDEIGMLEDMAVGISDLKKVAFKIIEAKSNDVLPVITGRREHYVVEVKLPARLFESLPLQIKEGQLLRVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELLKEYCTVFMEKMPPDYISHFQEQNDLKGLLENLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRREGCRIENVLKNIKCRKYAFNMLQLMAFPKYYRPPEGTYGKADT", "length": 924, "header": "tr|F1RRG5-1|F1RRG5_PIG Isoform 1 of phosphatidylinositol-3,4-bisphosphate 4-phosphatase OS=Sus scrofa OX=9823 GN=INPP4B PE=1 SV=3 CANONICAL=F1RRG5-1" }, "locus": { "chromosome": "8", "start_pos": 85514327, "end_pos": 85167603, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009911.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009911.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009656.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009656.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRG5", "url": "https://www.uniprot.org/uniprotkb/F1RRG5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511393", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511393", "resource": "KEGG Pathway" }, { "id": "R-SSC-1660499", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660499", "resource": "Reactome", "description": "Synthesis of PIPs at the plasma membrane" }, { "id": "R-SSC-1660516", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660516", "resource": "Reactome", "description": "Synthesis of PIPs at the early endosome membrane" }, { "id": "R-SSC-1855183", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855183", "resource": "Reactome", "description": "Synthesis of IP2, IP, and Ins in the cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PYC2-1", "protein_name": "phosphatidylinositol-3,4-bisphosphate 4-phosphatase", "gene_name": "INPP4B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEIKEERASDEAQQFLPSSQIDSLGEPQLTSIQRIANEPKLEFSLACKDLVAATRDRKLNTFIQVSVVHPAEHVLTRYSSTEIVEGTRDPLFLTGVTFPPEYPIYEETKIKLTVYDVKDKSQDTVHTTVLPDHKEPRTDVGRSFLGFTTFTVGDLVKSKEQQLTLTLRTSDGGKTVGTIEVNLVNMGELEDGEPGHVTTDSQDQKLLCFLPLKSCKRGFLSAASAHNTENLERMADRKAKEECALVRECTASEGISGKDNLPSLNAVLKNPICKLYRFPTSDNKWMRIREQMAETILSFHVPKELINLHIKEDMRRNQELKDLGELAPHWDNMRKSVIAHCDQMLSMYQDTLAELGKHTGSSFKSSCSKGEKTLEFIPINLHLQRMHVHSPLLKDALYDVITVGAPAAHFQGFKNGGLRKLLSKFETERRNTGYQCIYYSPENTAKAKEVLSNINHLQPLISSHADLLLNSASQHSPDSLKNSLKMLSEKTELFVHAFKDQLVRSALLALYTARPGCVLKKPAVPRNSAEEGDDLKHQDHPSQVKRQDSIPHHSEYDEEEWDRVWANVGKSLNCVIAMVDKLLEKDNSGNTKEGETDPSTADCKHAGSDWYEQLYPLVITLKDCMGEVVTRAKQSMAFVLLQELACGLPQCLMLTLRRDIVFSQALAGLVCGFIIKLHTGLHDQGFLQQLHTVGLLVQYEGLLSTYSEEAGMLEDMAVGISDLQKVMFKVIEAKSEDFLPIITGRREHYVIEVQLPAKMFELLPQEIKEGKLLRMYPVLFNVGINEQQTLADRFGDTTLQENINQENLQLLKEYYNLFTEKMPPDCLPHFQEQNDLKGLLESLHQSIQAKKRKNVEIMWLAATICRKLNGVRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRSRQTQGALNDSDDPETGCLTDNKPTSRHFYPVALLLVSSHLLVVWLILSLALLLAKYQ", "length": 972 }, "evidence": [ { "id": "F1RRG5", "url": "https://omabrowser.org/oma/group/F1RRG5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2MC16-1", "protein_name": "Type II inositol 3,4-bisphosphate 4-phosphatase", "gene_name": "Inpp4b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEIKEEGTSEEGQHFLPTAQITDQEDTQFTSIQKIPNEPQLEFILACKDLVAPVCDRKLNTVVQISVIHPVEQTLTRYSSTEIVEGTKDPLFLTGVTFPPEYPIYEETRIKLTVYDVKDKSHDTIRTSVLLEHKDPPPEVGRSFLGSASFQVGELLKSKEQLLSLSLRTSDGGKVVGTIEVSLVKMGEIEDGDTDHITTVVQGQKCALAYECAAPDSVSGKDSLPLLNAVLKNPVCKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLHIKEDLCRNQELKELGDLSPHWDNLRKNVLTHCDQMVTMYQDILTELSKETGSSFKSSSNKGEKTLEFVPINLHLQRMQVQSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTGYQFIYYSPENTAKAKEVLSNINQLQPLIATHADLLLSSASQHSPDSLKSSLKLLSEKTELFVHAFKDQLVRSALLALYTARPGGILKKPPSPKDSAEKTSPQDEPPQLRRQDSIPHHSDYDEEEWDRVWANMGKSLNCIIATVDKLIERDGHNKEGGGGSSSQDGDMEASLEDSITSHPKEDWYEQLHPLIITLKECMGEVVSRAKQSLTFVLLQELAYSLPQCLMLTLRRDIVFSQALAGLVCGFIIKLHTSLHDPYFLQQLHTVGLIVQYEGLLSTYSDEIGMLEDMAVGISDLRKVAFKITEAKSSDDLPVLTGRREHYVVEVKLPATVFESLPLQIKEGQLLHVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELLQEYFSIFMEKMPPDYISHFQEQNDLKGLLDNLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRSRQTQGALNESDDPETGCLTDNKPTSRHFYPVALLLVSSHLLVVWLILSLALLLAKYQ", "length": 941 }, "evidence": [ { "id": "F1RRG5", "url": "https://omabrowser.org/oma/group/F1RRG5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MNJ3-1", "protein_name": "phosphatidylinositol-3,4-bisphosphate 4-phosphatase", "gene_name": "INPP4B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEIKEEGASEEGQNFLPTPQANDTGDFQFTSIQKTPNEPQLEFILACKDLVAPVRDRKLNTLVQISVIHPAEQGLTRYSSTEIVEGTRDPLFLTGVTFPSEYPIYEETKIKLTVYDVKDKSHDTVRTSVVPEHKDPPPEVGRSFLGYASFKVGELLKSKEQVLALSLRTSDGGKVVGTIEVSVVKMGEIEDGEADNITTDVQGQKCALVCECSAPESVSRKDNLPFLNAVLKNPVCKLYRFPTSDNKWMQIREQMSESILSFHIPKELISLQIKEDLCRNQELKELGELSPHWDNLRKNVLTHCDQMVNMYQDILTELSKETGSSFKSSSSKGEKTLEFVPINLHLQRMHVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFEAERRNTGYQFIYYSPENTAKAKEVLSNINQLQPLIAAHADLLLNSASQHSPDSLKNSLKMLSEKTELFVHAFKDQLVRSALLALYTARPGGVLKKPPSPQSGTEESISQDPPLPVRRQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAMVDKLIERESGGEGSSTSSKDVEKDSSPVDSIITHPKEDWYEQLYPLILTLKDCMGEVVNRAKQSLTFVLLQELAYSLPQCLMLTLRRDIVFSQALAGLVCGFIIKLHTSLYDPGFLEQLHTVGLIVQYEGLLSTYSEEIGMLEDMAVGISDLKKVAFKIIEATSNDVLPVITGRREHYVVEVKVPARVFESLPLQIKEGQLLHVHPVLFNVGINEQQTLAERFGDVSLQESINQENFELLKEYYTVFMEKMPPDYISHFQEQNDLKGLLENLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRREGCRIENVLKNIKCRKYAFNMLQLMAFPKYYRPPEGTYGKADT", "length": 925 }, "evidence": [ { "id": "F1RRG5", "url": "https://omabrowser.org/oma/group/F1RRG5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O15327-1", "protein_name": "Inositol polyphosphate 4-phosphatase type II", "gene_name": "INPP4B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEIKEEGASEEGQHFLPTAQANDPGDCQFTSIQKTPNEPQLEFILACKDLVAPVRDRKLNTLVQISVIHPVEQSLTRYSSTEIVEGTRDPLFLTGVTFPSEYPIYEETKIKLTVYDVKDKSHDTVRTSVLPEHKDPPPEVGRSFLGYASFKVGELLKSKEQLLVLSLRTSDGGKVVGTIEVSVVKMGEIEDGEADHITTDVQGQKCALVCECTAPESVSGKDNLPFLNSVLKNPVCKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLHIKEDLCRNQEIKELGELSPHWDNLRKNVLTHCDQMVNMYQDILTELSKETGSSFKSSSSKGEKTLEFVPINLHLQRMQVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTGYQFIYYSPENTAKAKEVLSNINQLQPLIATHADLLLNSASQHSPDSLKNSLKMLSEKTELFVHAFKDQLVRSALLALYTARPGGILKKPPSPKSSTEESSPQDQPPVMRGQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAMVDKLIERDGGSEGSGGNNDGEKEPSLTDAIPSHPREDWYEQLYPLILTLKDCMGEVVNRAKQSLTFVLLQELAYSLPQCLMLTLRRDIVFSQALAGLVCGFIIKLQTSLYDPGFLQQLHTVGLIVQYEGLLSTYSDEIGMLEDMAVGISDLKKVAFKIIEAKSNDVLPVITGRREHYVVEVKLPARMFESLPLQIKEGQLLHVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELLQEYYKIFMEKMPPDYISHFQEQNDLKALLENLLQNIQSKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRREGCRIENVLKNIKCRKYAFNMLQLMAFPKYYRPPEGTYGKADT", "length": 924 }, "evidence": [ { "id": "F1RRG5", "url": "https://omabrowser.org/oma/group/F1RRG5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P1Y8-1", "protein_name": "Type II inositol 3,4-bisphosphate 4-phosphatase", "gene_name": "Inpp4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIKEEGTSEEGQHFLPAAQANDPEDIQFTSIQKIPNEPQLEFILACRDLVAPVSDRKLNTVVQISVIHPVEQTLTRYSSTEIVEGTKDPLFLTGVTFPPDYPIYEETRIKLTVYDVKDKSHDTIRTSVLPEHKDPLPEVARSFLGCASFKVGELLKSKEQLLSLSLRTSDGGKVVGTIEVSLVKMGEIEDGDTDHITTDVQGQKCALMYESTAPESLSGKENLPFMNAVLRNPVCKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLHIKEDLCRNQELKELGDLSPHWDNLRKNVLSHCDQMVTMYQDILTELSKETGSSFKSSSSKGEKTLEFVPVNLHLQRMQVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTGYQFIYYSPENTAKAKEVLSSINQLQPLIATHADLLLTSASQRSPDSLKSSLKLLSEKTELFVHAFKDQLVRSALLALYTARPGGILKKPPSPNVSTEEKSTQHDTPQLRRQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAKVDKLIERDSHNEEGAGGSSSKDGEADHTLEDSITSHPREDWYEQLHPLILTLKECMGEVVNRAKQSLTFVLLQELAYSLPQCLMLTLRRDIVFSQALAGLVCGFIIKLHTSLHDPGFLQQLHTVGLIVQYEGLLSTYSDEIGMLEDMAVGISDLRKVAFKITEATSNDVLPVLTGRREHYVVEVKLPATVFESLPLQIKEGQLLHVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELVQEYYSIFMEKMPPDYISHFQEQTDLKGLLDNLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRREGCRIENVLKNIKCRRYAFNMLQLMAFPKCYRPPEGTYGKADT", "length": 927 }, "evidence": [ { "id": "F1RRG5", "url": "https://omabrowser.org/oma/group/F1RRG5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QWG5-1", "protein_name": "Type II inositol 3,4-bisphosphate 4-phosphatase", "gene_name": "Inpp4b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEIKEEGTSEEGQHFLPAAQANDPEDIQFTSIQKSPNEPQLEFILACKDLVAPVSDRKLNTVVQVSVIHPVEQTLTRYSSTEIVEGTKDPLFLTGVTFPSDYPIYEETRIKLTVYDVKDKPHDTIRTSVLPEHKDPPPEVARSFLGCASFKVGELLKSKEQLLSLSLRTSDGGKVVGTIEVSLVKMGEIEDGDTDHITTDVQGQKCALVYDSTAPESLSGKENLPFMNAVLRNPVCKLYRFPTSDNKWMRIREQMSESILSFHIPKELISLHIKEDLCRNQELKELGDLSPHWDNLRNNVLSHCDQMVTMYQDILTELSKETGSSFKSSSSKGEKTLEFVPINLHLQRMQVHSPHLKDALYDVITVGAPAAHFQGFKNGGLRKLLHRFETERRNTGYQFIYYSPENTAKAKEVLSSINQLQPLVATHADLLLTSASQHSPDSLRSSLKLLSEKTELFVHAFKDQLVRSALLALYTARPGGILRKPPSPKVSTEEKSSQHDSPQQLRRQDSIPHHSDYDEEEWDRVWANVGKSLNCIIAKVDKLIERDSRNDKSTGGDSSKDGDADPNLEDSLTSHPREDWYEQLHPLILTLKECMAEVVNRAKQSLTFVLLQELAYSLPQCLMLTLRRDIVFSQALAGLVCGFIIKLHTSLHDPGFLQQLHTVGLIVQYEGLLSTYSDEIGMLEDMAVGISDLRKVAFKITEATSNDVLPVLTGRREHYVVEVKLPATVFESLPLQIKEGQLLHVYPVLFNVGINEQQTLAERFGDVSLQESINQENFELVQEYYSIFMEKMPPDYISHFQEQNDLKGLLDNLHQNIQAKKRKNVEIMWLAATICRKLNGIRFTCCKSAKDRTSMSVTLEQCSILRDEHQLHKDFFIRALDCMRREGCRIENVLKNIKCRRYAFNMLQLMAFPKCYRPPEGTYGKADT", "length": 928 }, "evidence": [ { "id": "F1RRG5", "url": "https://omabrowser.org/oma/group/F1RRG5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RRG5", "url": "https://www.uniprot.org/uniprotkb/F1RRG5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity", "id": "GO:0016316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016316", "evidence": [ { "database": "UniProtKB", "id": "F1RRG5", "url": "https://www.uniprot.org/uniprotkb/F1RRG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "43388", "name": "", "equation": "1D-myo-inositol 3,4-bisphosphate + H2O = 1D-myo-inositol 3-phosphate + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43388", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43388" } ] }, { "id": "R-SSC-1676162", "name": "PI(3,4)P2 is dephosphorylated to PI3P by INPP4A/B at the early endosome membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, early endosome membrane", "input_participant_list": [ "R-ALL-1806238" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1676162", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1676162" } ] }, { "id": "R-SSC-1676164", "name": "PI(3,4)P2 is dephosphorylated to PI3P by INPP4A/B at the plasma membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1676164", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1676164" } ] }, { "id": "R-SSC-1855180", "name": "I(1,3,4)P3 is dephosphorylated to I(1,3)P2 by INPP4A/B in the cytosol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-ALL-1629769" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1855180", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855180" } ] }, { "id": "R-SSC-1855202", "name": "I(3,4)P2 is dephosphorylated to I3P by INPP4A/B in the cytosol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-1629746" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1855202", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855202" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1629746", "participant_name": "I(3,4)P2 [cytosol]", "crossref": [ { "id": "83241", "database": "ChEBI", "url": "" }, { "id": "ZINC000004096300", "database": "ZINC", "url": "" }, { "id": "C04063", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-1629769", "participant_name": "I(1,3)P2 [cytosol]", "crossref": [ { "id": "83242", "database": "ChEBI", "url": "" }, { "id": "C04062", "database": "COMPOUND", "url": "" }, { "id": "ZINC000100016181", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-1806238", "participant_name": "PI(3,4)P2 [early endosome membrane]", "crossref": [ { "id": "16152", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 22, "end_pos": 24 }, { "start_pos": 490, "end_pos": 492 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RRI0-1", "uniprot_ac": "F1RRI0", "uniprot_id": "F1RRI0_PIG", "mass": { "chemical_mass": 51773.0, "monoisotopic_mass": 51773.0 }, "refseq": { "ac": "XP_003480725", "name": "tigger transposable element-derived 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scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRI0", "url": "https://www.uniprot.org/uniprotkb/F1RRI0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TIGD3", "url": "https://www.uniprot.org/uniprotkb/F1RRI0", "locus": { "chromosome": "2", "start_pos": 6865374, "end_pos": 6866789, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012994", "url": "https://www.ensembl.org/id/ENSSSCG00000012994" } ] } } ], "crossref": [ { "id": "F1RRI0", "url": "https://alphafold.ebi.ac.uk/entry/F1RRI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012994", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012994", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737751", "url": "https://www.ncbi.nlm.nih.gov/gene/100737751", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737751", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737751", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PGLCHVR", "url": "https://omabrowser.org/oma/group/PGLCHVR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RRI0", "url": "https://www.orthodb.org/?gene=F1RRI0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480725", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480725", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RRI0", "url": "https://www.uniprot.org/uniprotkb/F1RRI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRI0-1", "url": "https://www.uniprot.org/uniprotkb/F1RRI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELCSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGARHVLVPPLPPEPPPPAPTPQAQLPLSLKDFSPEDIFGCAEVPLLYRAVPGRVGTRDRVQVLLCANSRGTEKRRVLVSGLQAAPRCFFGVSSEALLASYHPDLVIPWSEWLAQFDRDMGQQGRQVALLLAARVVEELVGLPRLCHVRLLPLSAASTTPSLPSSVVRAFKAHYRHRLLGKLAAAQSERAGPSLAAAGAAITVLDALHMAAAAWAKVPLQLIVSSFVQEGLAPGTTPPDPDKASEMPPVPGGLSLEEFSRFVDLEGEEAMSGVCKEEVSPEGEEGHGEDGFEPLPTKADALRALSTLRRWFECNGTSPELFENFYACEEGVERLCCL", "length": 471, "header": "tr|F1RRI0-1|F1RRI0_PIG Isoform 1 of Tigger transposable element derived 3 OS=Sus scrofa OX=9823 GN=TIGD3 PE=4 SV=2 CANONICAL=F1RRI0-1" }, "isoforms": [ { "isoform_ac": "F1RRI0-1", "url": "https://www.uniprot.org/uniprotkb/F1RRI0/entry", "sequence": { "sequence": "MELCSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGARHVLVPPLPPEPPPPAPTPQAQLPLSLKDFSPEDIFGCAEVPLLYRAVPGRVGTRDRVQVLLCANSRGTEKRRVLVSGLQAAPRCFFGVSSEALLASYHPDLVIPWSEWLAQFDRDMGQQGRQVALLLAARVVEELVGLPRLCHVRLLPLSAASTTPSLPSSVVRAFKAHYRHRLLGKLAAAQSERAGPSLAAAGAAITVLDALHMAAAAWAKVPLQLIVSSFVQEGLAPGTTPPDPDKASEMPPVPGGLSLEEFSRFVDLEGEEAMSGVCKEEVSPEGEEGHGEDGFEPLPTKADALRALSTLRRWFECNGTSPELFENFYACEEGVERLCCL", "length": 471, "header": "tr|F1RRI0-1|F1RRI0_PIG Isoform 1 of Tigger transposable element derived 3 OS=Sus scrofa OX=9823 GN=TIGD3 PE=4 SV=2 CANONICAL=F1RRI0-1" }, "locus": { "chromosome": "2", "start_pos": 6866789, "end_pos": 6865377, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014204.2", "url": "https://www.ensembl.org/id/ENSSSCT00000014204.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013818.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013818.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 155, "start_aa": "Thr", "end_pos": 155, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr155", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 370, "start_aa": "Thr", "end_pos": 370, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr370", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRI0", "url": "https://www.uniprot.org/uniprotkb/F1RRI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737751", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737751", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HVW9-1", "protein_name": "Tigger transposable element-derived protein 3", "gene_name": "Tigd3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MELNTKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANHERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGARQVLVPLFPPEPPPPGLLSQVQPPLSLKDFSPEDVFGCAEVPLLYRAVPGRVLACDRLQVLLCANSRGTEKRRVFVGGLQAAPRCFFGVNSEALPASYHPDLAIPWSEWLAQFDQDMGQQGRQVALLLAAGVAEEWASLPGLHHVRLLPLSASSTTPSLPGSVVLAFKAHYRHRLLSKLAAMQRGRKGTSLADARANITVLDALHMVAAAWAKVSPQLILSSFIHEGLAPGKTAPSLNKDTEMSPVPSGLSQEEFSHFVDLEDEDPGPRVCKEETGTEDIGREEDGFESLPTKADALRALCTLRRWLECNSTSPEPFEKFYDCEVEVEQLCCL", "length": 470 }, "evidence": [ { "id": "F1RRI0", "url": "https://omabrowser.org/oma/group/F1RRI0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZS21-1", "protein_name": "Tigger transposable element derived 3", "gene_name": "Tigd3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELNTKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANHERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGTRQVLVPLLPPEPPPAVSPSQAQPPLSLKDFSPEDVFGCAEVPLLYRAVPGRVFECDRLQVLLCANSRGTEKRRVFVGGLQPAPRCFFGVNSEALPASYHPDLAIPWSEWLAQFDQDMGQQGRQVALLLASGVVEEWASPPGLHHVRLLPLSTSSTTPSLPGSVVLAFKAHYRHRLLSKLAAMQSGKEGTSRAEARANITVLDALHMVAAAWAKVPRQLILTSFIQEGLAPGKTPLSLDKDTEMSPVPSGLSQEEFSHFVDLEDEDPGPRVCKEETSTEDNGREEDGFESLPTKADALRALCTLRRWLECNSTSPELFEKFYDCEVEVEQLCCL", "length": 470 }, "evidence": [ { "id": "F1RRI0", "url": "https://omabrowser.org/oma/group/F1RRI0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MZ31-1", "protein_name": "Tigger transposable element derived 3", "gene_name": "TIGD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELCGKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADILGQDFVPSIGWLVRWKRRNNVGFGARHILAPPFPPEPPPPAPTPQAQLPLSLKDFSPEDIFGCVEVPLLYRAVPGRAGTCDRVQVLLCANSRGTEKRRLLVCGPQAAPRCFFGVSSEALPASYHPDLAIPWSEWLSQFDRDMGRQGRQVALLMAAQVVEEVAGLPGLCHVRLLPLSAASPTQPLPSSVVRAFKAHYRRRLLSKLAAAQSERACTLLAEIGAGITVLDALHMAAAAWAKVPLQLIVSSFIQEGLAPGKTPVAQDQASEVLQVPGGLSLEEFSRFVDLESEEPVSGACKEEVGPADEAGGGEDGFEPLPTKADALQALGTLRRWLECSGTTPELFENFYACEEGVERLCCL", "length": 471 }, "evidence": [ { "id": "F1RRI0", "url": "https://omabrowser.org/oma/group/F1RRI0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6B0B8-1", "protein_name": "Tigger transposable element-derived protein 3", "gene_name": "TIGD3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELSSKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANRERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGARHVLAPSFPPEPPPPGLTSQAQLPLSLKDFSPEDVFGCAELPLLYRAVPGSFGACDQVQVLLCANSRGTEKRRVLLGGLQAAPRCFFGIRSEALPASYHPDLGIPWLEWLAQFDRDMGQQGRQVALLLAARVVEELAGLPGLYHVKLLPLAASSTTPPLPSSVVRAFKAHYRHRLLGKLAAIQSERDGTSLAEAGAGITVLDALHVASAAWAKVPPQLIFSSFIQEGLAPGKTPPSSHKTSEMPPVPGGLSLEEFSRFVDLEGEEPRSGVCKEEIGTEDEKGDREGAFEPLPTKADALRALGTLRRWFECNSTSPELFEKFYDCEEEVERLCCL", "length": 471 }, "evidence": [ { "id": "F1RRI0", "url": "https://omabrowser.org/oma/group/F1RRI0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TM95-1", "protein_name": "Tigger transposable element-derived protein 3", "gene_name": "Tigd3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELNTKKKLHALSLAEKIQVLELLDESKMSQSEVARRFQVSQPQISRICKNKEKLLADWCSGTANHERKRKRESKYSGIDEALLCWYHIARAKAWDVTGPMLLHKAKELADIMGQDFVPSIGWLVRWKRRNNVGFGTRQVLVPLFPPEAPPAVLPSQAQPPLSLKDFSPEDVFGCAEVPLLYRAVPGRVFECDRLQVLLCANSRGTEKRRVFVGGLQAAPRCFFGVSSEALPTSYHPDLAIPWSEWLAQFDQDMGQQGRQVALLLASGVVEEWASLPGLHHVRLLPLSASSTTPSLPGSVILAFKAHYRHRLLSKLAAMQSGKEGTSLAEARASITVLDALHMVAAAWAKVPRQLILSSFVQEGLAPGKTPLSLDKDTEMSPVPSGLSQEEFSHFVDLEDEDPGPRVCKEETGTEDSGREEDGFEPLPTKADALQALCTLRRWLECNSASPELFEKFYDCEVEVEQLCCL", "length": 470 }, "evidence": [ { "id": "F1RRI0", "url": "https://omabrowser.org/oma/group/F1RRI0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RRI0", "url": "https://www.uniprot.org/uniprotkb/F1RRI0" } ], "pmid": "" } ] }, { "name": "Cellular 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"PRU00320", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00320" } ], "ann_type": "Nucleotide_Binding_Annotation", "uniprotkb_annotation": "H-T-H motif", "eco_id": "ECO_0000256", "start_pos": 31, "end_pos": 51, "start_aa": "Gln", "end_aa": "Asn", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RRI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRI0" }, { "id": "PS51253", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51253" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH CENPB-type", "eco_id": "ECO_0000259", "start_pos": 67, "end_pos": 137, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RRI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRI0" }, { "id": "PS50960", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50960" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH psq-type", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 55, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 155, 370 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 448, "end_pos": 450 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RRI4-1", "uniprot_ac": "F1RRI4", "uniprot_id": "F1RRI4_PIG", "mass": { "chemical_mass": 21480.0, "monoisotopic_mass": 21480.0 }, "refseq": {}, "gene_names": [ { "name": "ZNRD2", "type": "recommended", "evidence": [ { "id": "F1RRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRI4" } ] } ], "protein_names": [ { "name": "Zinc ribbon domain containing 2", "type": "synonym", "evidence": [ { "id": "F1RRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRI4", "url": "https://www.uniprot.org/uniprotkb/F1RRI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNRD2", "url": "https://www.uniprot.org/uniprotkb/F1RRI4", "locus": { "chromosome": "2", "start_pos": 6683057, "end_pos": 6684494, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020737", "url": "https://www.ensembl.org/id/ENSSSCG00000020737" } ] } } ], "crossref": [ { "id": "ENSSSCG00000020737", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000020737", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051888", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051888", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TYCVACQ", "url": "https://omabrowser.org/oma/group/TYCVACQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RRI4", "url": "https://www.orthodb.org/?gene=F1RRI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16537", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16537", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16537:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16537:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06677", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06677", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RRI4", "url": "https://www.uniprot.org/uniprotkb/F1RRI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRI4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASEPPLGSRPAPQPPVPRPEHCEGAAAGLKAVQGPPPPAVPPNAEVVACTREALLQKLAWASAELGSSTSLETSIQLCSLIRACAEALRSLQQLQP", "length": 199, "header": "tr|F1RRI4-1|F1RRI4_PIG Isoform 1 of Zinc ribbon domain containing 2 OS=Sus scrofa OX=9823 GN=ZNRD2 PE=1 SV=1 CANONICAL=F1RRI4-1" }, "isoforms": [ { "isoform_ac": "F1RRI4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRI4/entry", "sequence": { "sequence": "MALNGAEVDDFSWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRKIYCVACQELDSDVDKDNPALNAQAALSQAREHQLASASEPPLGSRPAPQPPVPRPEHCEGAAAGLKAVQGPPPPAVPPNAEVVACTREALLQKLAWASAELGSSTSLETSIQLCSLIRACAEALRSLQQLQP", "length": 199, "header": "tr|F1RRI4-1|F1RRI4_PIG Isoform 1 of Zinc ribbon domain containing 2 OS=Sus scrofa OX=9823 GN=ZNRD2 PE=1 SV=1 CANONICAL=F1RRI4-1" }, "locus": { "chromosome": "2", "start_pos": 6684476, "end_pos": 6683254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022381.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022381.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025435.1", "url": "https://www.ensembl.org/id/ENSSSCP00000025435.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRI4", "url": "https://www.uniprot.org/uniprotkb/F1RRI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3IGT5-1", "protein_name": "Protein ZNRD2", "gene_name": "Znrd2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALNGAEVDDFAWAPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGDTCADCGTILLQDKQRKIYCVACQELDSDVDKDNPALNPQAALSQAREHQLASTTEPATGSRPTPQPPVPRPEHCEGAAAGLKAAQGPPLPAAPLNTDVVAYTQTALLQKLTWASAELGSSTSLETSIQLCGLIRACAEALCSLKQLQL", "length": 199 }, "evidence": [ { "id": "F1RRI4", "url": "https://omabrowser.org/oma/group/F1RRI4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O60232-1", "protein_name": "Protein ZNRD2", "gene_name": "ZNRD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RRI4", "url": "https://www.uniprot.org/uniprotkb/F1RRI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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{ "id": "PTHR34033", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34033", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34033:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34033:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21587", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21587", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21588", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21588", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21589", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21589", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21590", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21590", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122578", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RRK6", "url": "https://www.uniprot.org/uniprotkb/F1RRK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRK6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPQSRETWAQRLGTFRASPSAFMEGPEGEDLARDLLSDLRSEKLSEPTKVSLLALSLEYPTQLWPDASAAEAAANSLLDTLVLLPPRPSALRRPLLLAATTALAAGGALGPTSGASRRLLPLLLGLASGRDLGRGFSPASEQRPLQATAWECLRELESCKPGLLGGCLGLLRGLLGQEGPVQPLSLLLALALRNALMIQARARASLQGLLTAGDCPTEGAPWNWTLAEAGDAHLQPQAPSWPAAEEGECGLTALELSPEEARELRAAVAQLLDASYLLTPVAQAQLLWLLGWALRGLRGQPPVLFKPQLVRLLGTAQLTLLHAVLALKAAFGEALFTAQDEALLLRRLILAAQHPALPLPAHLFCLHCLLSFPENWPLGPAGEEAAPLLLGSQLCRGLLPSLLHDPMALLARLHLLCLLCVEDEDKEEQGQDPSPRRYLEELLAGLRQRAALDGGPRALATLCFQASYLVARCLAGHPVVLTPLTHGLAQLYRARPALTPHFADLLDQVGPELGEPLKVVLRQEVVSRPGRDEALRWHLQMLAKVADGDAQGATLSFLQAAATHCTDWGLQQALLKVCRALLRAGVVRGLADLLQALARQLEDPDGRDHARLYYILLAHLARPKLGVALGPSLAAPALASSLVAENQGFAKALMVQEAPAPIRLSLGPRRAEGPVPVLQLQVEVLEPVYSLELRFSVERQLYAPLGAVHVPCLCPSRPARPLLLPLQPRRPAPARLAVRALYTTPAGLTCHAHLPPLLVNFADLFLPFPQPPEGAKVDFFEELWDSCLPKGAESHLWCPLGPHGLEALVSRHLEPFVVVAQPPTSYCVAIRLPPNSKLLLRLEAAQADGVPVALRTDDWAVLPLVGDYLRGLAAAG", "length": 877, "header": "tr|F1RRK6-1|F1RRK6_PIG Isoform 1 of AP-5 complex subunit beta-1 OS=Sus scrofa OX=9823 GN=AP5B1 PE=4 SV=2 CANONICAL=F1RRK6-1" }, "isoforms": [ { "isoform_ac": "F1RRK6-1", "url": "https://www.uniprot.org/uniprotkb/F1RRK6/entry", "sequence": { "sequence": "MGPQSRETWAQRLGTFRASPSAFMEGPEGEDLARDLLSDLRSEKLSEPTKVSLLALSLEYPTQLWPDASAAEAAANSLLDTLVLLPPRPSALRRPLLLAATTALAAGGALGPTSGASRRLLPLLLGLASGRDLGRGFSPASEQRPLQATAWECLRELESCKPGLLGGCLGLLRGLLGQEGPVQPLSLLLALALRNALMIQARARASLQGLLTAGDCPTEGAPWNWTLAEAGDAHLQPQAPSWPAAEEGECGLTALELSPEEARELRAAVAQLLDASYLLTPVAQAQLLWLLGWALRGLRGQPPVLFKPQLVRLLGTAQLTLLHAVLALKAAFGEALFTAQDEALLLRRLILAAQHPALPLPAHLFCLHCLLSFPENWPLGPAGEEAAPLLLGSQLCRGLLPSLLHDPMALLARLHLLCLLCVEDEDKEEQGQDPSPRRYLEELLAGLRQRAALDGGPRALATLCFQASYLVARCLAGHPVVLTPLTHGLAQLYRARPALTPHFADLLDQVGPELGEPLKVVLRQEVVSRPGRDEALRWHLQMLAKVADGDAQGATLSFLQAAATHCTDWGLQQALLKVCRALLRAGVVRGLADLLQALARQLEDPDGRDHARLYYILLAHLARPKLGVALGPSLAAPALASSLVAENQGFAKALMVQEAPAPIRLSLGPRRAEGPVPVLQLQVEVLEPVYSLELRFSVERQLYAPLGAVHVPCLCPSRPARPLLLPLQPRRPAPARLAVRALYTTPAGLTCHAHLPPLLVNFADLFLPFPQPPEGAKVDFFEELWDSCLPKGAESHLWCPLGPHGLEALVSRHLEPFVVVAQPPTSYCVAIRLPPNSKLLLRLEAAQADGVPVALRTDDWAVLPLVGDYLRGLAAAG", "length": 877, "header": "tr|F1RRK6-1|F1RRK6_PIG Isoform 1 of AP-5 complex subunit beta-1 OS=Sus scrofa OX=9823 GN=AP5B1 PE=4 SV=2 CANONICAL=F1RRK6-1" }, "locus": { "chromosome": "2", "start_pos": 6551206, "end_pos": 6548473, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014186.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014186.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013800.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013800.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 113, "start_aa": "Thr", "end_pos": 113, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr113", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRK6", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511736", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511736", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LS78-1", "protein_name": "AP-5 complex subunit beta-1", "gene_name": "Ap5b1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGPLSREAWAQRLGAFRASPSAFLAGAEGEDLGRDLLSDLRSEKLSEQTKVSLLTLSLEYSDKLWSDAPAAEAAATSLLDTLVLLPSKPSALRRLLLLAATTALVSGGALGPTSGASCRLLPLLLGLASGRDMGRSFGTLSEQRHLQATACECLGELERCKPGLLAGSLGILRSLLGQTGPIQPVSLLLALVLHNTLVVPSRPGAEIGAGLQGLLVAGVSSSGSCPWDWTLAEEWDAHLQPQAPSWPTTGEEHGFPLLKPSPEEARELKAAVAQLLDTSYLLTSVAQAQLLWLLGWALRGLRGQPPVVFKPQLVRLLGTAQLTLLHSVLALKAAFGEALFTAQDEALLLRRLTLVAQHPALPSPTHLFYLNCILSFPENCPLGLEGEEAAPLLLGPQLSRGLMPSLLHDPMVLLARLHLLCLLCADAEEEEKGHVHSPRWYLQELLAGLQQRAALDGGPQALATLCFQASYLVASCLAGQPTVRTSLVHGLAQLYRARPSLAPHFVDLLDQVSPELREPLRVVLQQEVVARPGKNESLCWHLRMLAKVAEGDAQRATLSFLQAAAIHCTDWGLQQALLRVCRALLRTGGGDGLADLLQVLARQLEDADGRDHARLYYILFSHLSSSKLGMALGPSLAVPALASSLVAENQGFASTLMVQETPAPIQLSVGPQKAKGTLPVLHLQVEALEAPVYSLELRFRVAGQLYGPLEAVHIPCLCPGQPAHPLCLTLQPRRPAPARLHVEALYTTPAGLTCHAHLHPLSVKFADLFLPFPQLPKGSELCFFDDLWNSCLPKGVESRMWCPLGPQGLEALVSQHLEPFVVVAQPPTTYLIAVQLPPDSMLLLRLEKAQVDGVPVALRTDNWAVLPLVGDYLRSLAAH", "length": 879 }, "evidence": [ { "id": "F1RRK6", "url": "https://omabrowser.org/oma/group/F1RRK6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZVB0-1", "protein_name": "AP-5 complex subunit beta-1", "gene_name": "Ap5b1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGPLSREAWAQRLGSFRASPSAFLAGAEGEDLGHDLLSDLRSEKLSELIKVSLLTLSLEYSDKLWPDALAAEAAATSLLDTLVLLPSKPSALRRLLLLAATTALVSGGALGPTSEASSRLLPLLLGLASGQDMGRSFGTTSEQRHLQATACECLGELERCKPGLLAGALGVLRSLLGQKGPIQPVSLLLALVLHNTLVVQSRFGAGLQGLLVAKDSSPGSCPWDWTLAEEWDDHLKPQAHGWPTAGEEERDFPILDPNPEDTRELKAAVAQLLDTSYLLTPVAQAQLVWLLGWALQGLRGQPPVLFKPQLVRLLGTAQLTLLHSVLSLKAAFGEALFTAQDEALLLRRLTLVAQHPALPSPTHLFYLHCILSFPENCPLGPEGEEAAPLLLGPQLRRGLMPSLLHDPMVLLARLHLLCLLCADDEEEEKGQLQGPQWFLQELLAGLQQRAAVDGGPRALATLCFQASYLVTSCLTRQPTVQTSLVHGLAQLYRARPSLAPHFVDLLDEVSPELREPLRKVLLREVVARPGKNEALRWHLQMLAKVAEGATQSAILGFLQAAAIHCTDWGLHQALLRVCRALLRTGGGEGLADLLQELARQLENADGRDHARLYYVLLSHLSSSKLGMALGPSLAAPALASSLMAENQGFASALMVQETSAPIQLSVGPQKAKGPLPVLHLQVQALDTPVYSLELRFRVEGQLYEPVEAVHIPSVRPGQPAHPLHLPLQPRSPAPARLHVRALYTTPAGLTCHAHLPPLSVNFADLFLPFPQLPKGSELCFFDELWNSCLPKGVESRVWCPLGPQGLEALVSQHLEPFVVVAQPPTTYLIAVRLPPHSMLLLRLEKAQVHGVPVALRTDDWAVLPLVGDYLRGLAAH", "length": 876 }, "evidence": [ { "id": "F1RRK6", "url": "https://omabrowser.org/oma/group/F1RRK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QPU4-1", "protein_name": "AP-5 complex subunit beta-1", "gene_name": "ap5b1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTIADLWDQRISAFLLSPSQFLATSTSEIFLAELLHELRNDKINDQLKILLVSALLEHPTILCPSASVGEETALELLSIFSQTPQKSISLKCNVMLAITNVIICTSCLATHTKMAEDWLDLLFQTIQDTNDYRCGQSQQPLRATACDCLREMETCSPGLLSQKLEALYLLKQQETSVLHQSYCILYTLGLKNAIRILTNQKEVTDFEFKSILGGNEGFAWRTNQNFLPINMIVQVPQLPQGLDCKELKSIMSLLLEESYLLTPISQSSLMRDLVEVVAMVPGLSPTLFKSQLLRLFGTAEVVLMHATLFMKDTFTDSLFTAEDENFLLKRLVGSAQHPLLRIPEKLFYMDCILHFPENRPISSSGEECLPVLVTPRLAASLLPTVFNDSATMLCRLNLLCLVHLEADEGEADKGIAYLFDHIMALLKIVDSDGSREVVVTSFRALFIFLKHFNGMEELSEKLIDKLRDIYSRHCRLAPNLIGLADRIQECLDDPIWSVKLLRGLQKCIMEMPPLQLTIHNLSWHLKVLKRVAKEGQITQRNTIYLLLNVLINSNLCERGKWQIGNAVLAVCRNLLEHPSIDQVFIELADLLQYISVNYNDTDIKDHARFYYTLLTNLSWEKLTGVLAKGPDGGRAKERSHSAIMAESEGIASNLTVCKTERHVLQLIKIQDKVSQSTSESSESLEDTGEARNWLEVYQEQFQTPGFGSEVTLRYNLTHAEETDPLFDRVFSICLHFEFKDSNYAKVSDIHVPCVFRDRKPPEVNVQLKPFQPYPTTLCFSAMFTTQDGRSWHSQLPDVSISFPEIFLPLPIATNASSACREQVFDHIWESAASGNPDKSAISLFCFKPGDESLADLIKTHFQGYLITDQQSERFWKVLFFLPPMCHVLLRITQAEDAVQVSIATDNWELLPFVNSYLRNITDDCSTTVTDG", "length": 931 }, "evidence": [ { "id": "F1RRK6", "url": "https://omabrowser.org/oma/group/F1RRK6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3MZC5-1", "protein_name": "AP-5 complex subunit beta-1", "gene_name": "AP5B1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLGRETWAQRLGTFRASPSAFMAGPEGEDLGRDLLSDLRSEKLSEPMKVALLALSLEYPDQLWPDAPAAEAAATSLLDTLVLLPPRPSALRRPLLLAATTALAAGGALNPASGASGRLLPLLLGLASGRDLGRSFCPASEQRPLQATAWECLRELESCRPGLLGGCLGLLRALLGREGPAQPLSLLLALALRNALVIQARAGAGLQGLLTAGESSMEGGPWNWMLAEEGEVHLQPQAPSWPAAEEDECGLAALELSPEEARELRATVAQLLDASYLLTPVAQAQLLWLLGWALRGLRGQPPVLFKPQLVRLLGTAQLTLLHAMLALKAAFGEALFTAQDEALLLRRLTLAAQHPALPLPTHLFYLHCLLNFPENWPLGPTGEEAAPLLLGSQLCRGLLPSLLHEPMALLARLHLLCLLCVEDEEKEGKGQDRSPRHYLEELLAGLRQRAALDGGPRALATLCFQASYLVAHCLAGQPVVLIPLTQGLAQLYRARPALAPHFVDLLDHVGPELQEPLRVALRQEVASRPGREEALRWHLQMLASVADGDAQSATLSFLRAAAAHCTDWGLQQALLRVCRALLRAGVGGGLADLLQELARQLEDPDGQDHARLYYILLAHLAGPKLGVALGPSLAAPALASSLVAENQGFAAALMVQEAPAPIRLSVGPRRAEGAVPVLRLQVEVLEPVYSLELRFRVEGQLYAPLGAVHVPCLCPGRPTRPLLLPLQPRRPAPARLAVRALYSTPSGLTCHAHLPPLLVAFADLFLPFPQPPEGAQLDFFEELWDSCLPKGTESRLWCPLGPEGLEALVSRHLEPFVVVAQPPVSYLVAIRLPPDSRLLLRLEAAQADGVPVALRTDDWAVLPLAGDYLRGLSAAG", "length": 877 }, "evidence": [ { "id": "F1RRK6", "url": "https://omabrowser.org/oma/group/F1RRK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q2VPB7-1", "protein_name": "AP-5 complex subunit beta-1", "gene_name": "AP5B1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGPLSRDAWAQRLGAFRASPSAFMAGPEGEDLGRDLLSDLRSEKLSEQTKVSLLALSMEYPAQLWPDASAAEVAATSLLDTLVLLPPRPSALRRPLLLAATTALAAGGALGPTSGASCRLLPLLLGLAAGSDLGRGFVPASEQRPLQATACECLRELESCKPGLLGGSLGLLRGLLGQEGPVQPLSLLLALALRNTLVLQSRVGAGLGGLLTDKVSPTGGGPWDWTLVEEGDGRLQPQAPSWPAAEEGEGERSLTAREHSPEEARELRAAVIQLLDTSYLLTPVAQAQLLWLLGWALRGLQGQPPALFKPQLVRLLGTAQLTLLHAMLALKAAFGEALFTAQDEALLLRRLTLAAQHPALPPPTHLFYLHCVLSFPENWPLGPEGEEAAPLLLGPQLCRGLLPSLLHDPMALLARLHLLCLLCAEEEEEEKGQLPSPRHYLEELLAGLRQRAALDGGPRALATLCFQASYLVACCLAGQPTVLTPLIHGLAQLYQARPMLAPHFVDLLDQVDSELREPLKVVLRQVVVSRPGRDEALCWHLQMLAKVADGDAQSATLNFLQAAAAHCTNWDLQQGLLRVCRALLRAGVRGGLVDLLQVLARQLEDPDGRDHARLYYILLAHLAAPKLGVALGPSLAAPALASSLVAENQGFVAALMVQEAPALVRLSLGSHRVKGPLPVLKLQPEALEPIYSLELRFRVEGQLYAPLEAVHVPCLCPGRPARPLLLPLQPRCPAPARLDVHALYTTSTGLTCHAHLPPLFVNFADLFLPFPQPPEGAGLGFFEELWDSCLPEGAESRVWCPLGPQGLEGLVSRHLEPFVVVAQPPTSYCVAIHLPPDSKLLLRLEAALADGVPVALRTDDWAVLPLAGDYLRGLAAAV", "length": 878 }, "evidence": [ { "id": "F1RRK6", "url": "https://omabrowser.org/oma/group/F1RRK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3TAP4-1", "protein_name": "AP-5 complex subunit beta-1", "gene_name": "Ap5b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPLGREAWAQRLGAFRASPSAFLAGAEGEDLGRDLLSDLRSEKLSEQTKVSLLTLSLEYSDKLWPDAPAAEAAATSLLDTLVLLPTRPSALRRLLLLAATTALVSGDALGPTSGASCRLLPLLLGLASGRDLGRSFGTPSEQRHLQATACECLGELERCKPGLLAGALGMLRSLPGQTGPIQPVSLLLALVLHDTLVVQSRSGAGLQGLLVAEDFSTGSCPWDWTLAEEWDAHLKPQGPSWPTAGEEERGFPVLEPSPEDARELKAAVAQLLDTSYLLTPVAQAQLLWLLGWALRGLRGQPPVLFKPQLVRLLGTAQLTLLHSVLSLKAAFGEALFTAQDEALLLRRLTLGAQHPALPSPTHLFYLHCILSFPENCPLGPEGEEAAPLLLGPQLCRGLMPSLLHDPTVLLARLHLLCLLCADDEEEEKDQTQGPQWFLQEVLAGLQQRAALDGGPRALATLCFQASYLVTNCLTRHSTVQTFLIRGLAQLYRARPSLAPHFVDLLDQVSPELREPLREVLLQEAVARPGESEALCWHLQMLAKVAEGATQSTTLSFLQAAAVHCTDWGLHQALLRVCRALLRTGGGDGLANLLQELARQLENADGRDHARLYYVLLSHLSSSKLGMALGPSLAAPALASSLMAENQGFSSALMVQETSAPIQLSVGPQQAKGPLPVLCLQVQALDAPVYSLELRFRVEGQLYEPLEAVHIPCLRPGQPAHPLYLLLQPRCPAPARLHVRALYSTSAGLTCHARLPPLSVNFADLFLPFPRLPKGSELRFFDELWNSCLPKGVESRVWCPLGQQGLEALVSQYLEPFVVLAQPPTTYLIAIRLPPASMLLLRLEKAQVDGVPVALRTDDWAVLPLVGDYLRGLAAH", "length": 876 }, "evidence": [ { "id": "F1RRK6", "url": "https://omabrowser.org/oma/group/F1RRK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1RRK6", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "F1RRK6", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "AP-type membrane coat adaptor complex", "id": "GO:0030119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030119", "evidence": [ { "database": "UniProtKB", "id": "F1RRK6", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RRK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" }, { "id": "PF21587", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21587" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP-5 complex subunit beta-1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 104, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RRK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" }, { "id": "PF21589", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21589" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP-5 complex subunit beta-1 beta-barrel", "eco_id": "ECO_0000259", "start_pos": 689, "end_pos": 758, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RRK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" }, { "id": "PF21590", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21590" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP5B1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 780, "end_pos": 872, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RRK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRK6" }, { "id": "PF21588", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21588" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP5B1 middle", "eco_id": "ECO_0000259", "start_pos": 261, "end_pos": 626, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 113 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 224, "end_pos": 226 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", 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"url": "https://www.ensembl.org/id/ENSSSCP00000001823.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRL3", "url": "https://www.uniprot.org/uniprotkb/F1RRL3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": 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"https://www.uniprot.org/uniprotkb/F1RRU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRU4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGITTLKDEELEELMTQLSADGDSTVGLNDLMGAIGYTKENGKIKVHSITEGPKKFKSKGMVPVQKLMKITNDTKHRVTGHMAVSDIKAKLKLNPLTKVPNFHGKRYKNLPGPLPCQLQHKEGKLSLSQMRAFQDAYNFFNKDKTGCIDLHGMMCTLAKLGMNLTKRDVYSELRCADIDRDGKVNFSDFINVLTDKNRFLKAVVPEKETCLAGNPGILLFEILSKLVETTALPRRAIMEIVSYFRRKFQETTSGMVWSPYTLGYGKGRFSPDICTPPSSSTAAFAHAARIAITEEKDLFKFLEDLKRCNPPSDSPYSKIPIFPLFPNVDGVVMGKPFKDVQKLEMLRKKEPLNFFEDYFFHKKDWKTQVKRATDNYNLGIALEHRKQMLNLWRKIRGDLIGIDSKNESFYDTFSTYTWSWNVCQELLSPKDLRLHDAYVNRNSFHNSVFPSSSDISECDTDTGRKRKRKSGKGFRQ", "length": 476, "header": "tr|F1RRU4-1|F1RRU4_PIG Isoform 1 of EF-hand calcium binding domain 3 OS=Sus scrofa OX=9823 GN=EFCAB3 PE=4 SV=3 CANONICAL=F1RRU4-1" }, "isoforms": [ { "isoform_ac": "F1RRU4-1", "url": "https://www.uniprot.org/uniprotkb/F1RRU4/entry", 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"https://www.ensembl.org/id/ENSSSCP00000018337.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRU4", "url": "https://www.uniprot.org/uniprotkb/F1RRU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1RRU4", "url": "https://www.uniprot.org/uniprotkb/F1RRU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RRU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 476, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RRU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RRU4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RRU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRU4" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 164, "end_pos": 199, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 406, "end_pos": 408 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"categories": [ "Enzyme and Pathway" ] }, { "id": "HFHPRKG", "url": "https://omabrowser.org/oma/group/HFHPRKG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RRW0", "url": "https://www.orthodb.org/?gene=F1RRW0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12482:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12482:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12394", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12394", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020944523", "url": 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"MWISFREDSGSLRSACIHESTVHSRVFQILYRNEEVPVNDAVIFRAHLLLDGERVEEALSEVDFQLKVDLHFTDSQQQLRDVAGVPVISSRVLGLHFHPRRGLHHQVPVMFDYFHLSVISVTIHAALVALQQPLISFTRPGRGPWLGKGGPDTGPEQSSLSLENLVFGAGYCKPTSSEGSFYVPSENCMQHAYKWHRELCFLLLHAYRGLRAYFLTIMRDVPELPHMELESLAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLASHLMALWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTTMPPLPAECLDIDGDWSTLPVIFEDRYVDCPATGHHLSVYPNFDAPASSPAITNLKDSEENHIGSRDAAVREDPVLPTRKPPPKNSDEELVRCPEPEENVPTPSHVDMCSESQVYLTIGEFQDKPGLPEAEHWPGQRSDVGRHLLADEDLPRSSLGPEDGQAPALTYIDVQSSSKNTCSAEPTVVTGAPHERGCWPSNSELHRAELSQGGGGGSRQNATSSEKTTLRELSPLGKGADPGSKMVLLSLRLVPSEPCDPLNPSLRDPVGLRASPRDAPAEEQEEGPVLSGAIERSSSVISDSGIESEPSSVAWSEARSRALELPGDREVLHQLVRRHALHRNSLEGGHTESNTSLPSGIQASLTSISSLPFEEEERELARTKLTKSVSAPQISSPEESAEDADTTQPGGGLAETPAEDSESRDPSGPCLPLSGGSGSRDAGVAHLLAEVVSDASHQQGPGYIDTPKGKEKVDPQGPCCLDGRTDNPPGVETKGLSLKIPPILALENPKNQPLPGAPVEAPKGRPEDANVGERPLPNSGILDAETFTHHKVPEVSSTSAANTVDLDSTSERGSSPCTAEDTVLRRGARTFPEDGREEGPACSPVSRSLHSQSTGNQEPRAGPSTVMSHLASAETFPLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGFSSKQTAFPITHQPLGSFGVVPTHSGKLEEEVSERMFSFYQAKENFKKELKIDGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEIIQHIQLYNLSIARISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLRPLVDAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "length": 1359, "header": "tr|A0A287ASK8-1|A0A287ASK8_PIG Computationally mapped isoform of Family with sequence similarity 135 member B OS=Sus scrofa OX=9823 GN=FAM135B PE=3 SV=2 CANONICAL=F1RRW0-1" }, "locus": { "chromosome": "4", "start_pos": 4655614, "end_pos": 4480122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059362.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059362.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046844.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046844.2" } ] } }, { "isoform_ac": "F1RRW0-1", "url": "https://www.uniprot.org/uniprotkb/F1RRW0/entry", "sequence": { "sequence": "MSEVQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIVGQTDSGSLRSACIHESTVHSRVFQILYRNEEVPVNDAVIFRAHLLLDGERVEEALSEVDFQLKVDLHFTDSQQQLRDVAGVPVISSRVLGLHFHPRRGLHHQVPVMFDYFHLSVISVTIHAALVALQQPLISFTRPGRGPWLGKGGPDTGPEQSSLSLENLVFGAGYCKPTSSEGSFYVPSENCMQHAYKWHRELCFLLLHAYRGLRAYFLTIMRDVPELPHMELESLAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLASHLMALWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTTMPPLPAECLDIDGDWSTLPVIFEDRYVDCPATGHHLSVYPNFDAPASSPAITNLKDSEENHIGSRDAAVREDPVLPTRKPPPKNSDEELVRCPEPEENVPTPSHVDMCSESQVYLTIGEFQDKPGLPEAEHWPGQRSDVGRHLLADEDLPRSSLGPEDGQAPALTYIDVQSSSKNTCSAEPTVVTGAPHERGCWPSNSELHRAELSQGGGGGSRQNATSSEKTTLRELSPLGKGADPGSKMVLLSLRLVPSEPCDPLNPSLRDPVGLRASPRDAPAEEQEEGPVLSGAIERSSSVISDSGIESEPSSVAWSEARSRALELPGDREVLHQLVRRHALHRNSLEGGHTESNTSLPSGIQASLTSISSLPFEEEERELARTKLTKSVSAPQISSPEESAEDADTTQPGGGLAETPAEDSESRDPSGPCLPLSGGSGSRDAGVAHLLAEVVSDASHQQGPGYIDTPKGKEKVDPQGPCCLDGRTDNPPGVETKGLSLKIPPILALENPKNQPLPGAPVEAPKGRPEDANVGERPLPNSGILDAETFTHHKVPEVSSTSAANTVDLDSTSERGSSPCTAEDTVLRRGARTFPEDGREEGPACSPVSRSLHSQSTGNQEPRAGPSTVMSHLASAETFPLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGFSSKQTAFPITHQPLGSFGVVPTHSGKLEEEVSERMFSFYQAKENFKKELKIDGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEIIQHIQLYNLSIARISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLRPLVDAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "length": 1404, "header": "tr|F1RRW0-1|F1RRW0_PIG Isoform 1 of Family with sequence similarity 135 member B OS=Sus scrofa OX=9823 GN=FAM135B PE=3 SV=3 CANONICAL=F1RRW0-1" }, "locus": { "chromosome": "4", "start_pos": 4655614, "end_pos": 4480067, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006522.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006522.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006351.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006351.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRW0", "url": "https://www.uniprot.org/uniprotkb/F1RRW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155271", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155271", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NX74-1", "protein_name": "Family with sequence similarity 135 member B", "gene_name": "FAM135B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSEVQGTVEFSVELHKFHNVDLFQRGYYQIRAGLKIPSRIPHRLFATIAGQTGDSSLCSACVHENNIYSRIFQILYRNEEIILNESMNFRVHLLLDGERVEDALSEADFQLKLDLHFTDSEQQLRDVPAIPMISSRTLCLHFHPQRGLHHHVPVMFDYFHLSVISVTVHASLVALHQPLISFARPGKGSWLGKGNLDTGPDQSSMSLENLVFGAGYCKPTSSEGSFYVPSENCMQHAYKWHKDLCLLLLNAQRGLHVYYSLIMKEVPDLPQMKLEELPVEDTLSQFCAELQLLSNPEKIAEQISKDLAWLCSHLLALWTQFLEVATLHPEVTAYLTQEHHMLRVRRFSEAFFYTEHNKLAVLTFQEGLIQSHAQISTEIRNSEYFTSMPPLPAECLEIDGDWNTLPVIFEDRYMDLPCKDQNLDTFPDFEVPANTQIDVIDEKENLASNDATVEMKGDFGKGTLLIHTDRINGNPCLYSDTEGAALAAKGLNQHSNSQVCTVNKEGQRKPENICVSSKETTSVSELSNTECVSEESKTCKEVLLKDSRHSVGITSEEKKSSNKGPHRSEPMLIVSAQLECGACGTDGLESRTEIHKTSESGHLENNFSSEPALSEFTRLERTPEPDSKPLHPVLKALPSHSLEVKLFAKEQRTEECEEFTLMSGVIKRSSSIISDSGIESEPSSVAWSDARSRALELPSDREILHHLVRRHAIHRNSLEGGHTESNTSLPSGIQASLTSISSLPFEEEERVVELTKLTKSVSAPQISSPEEPVEEVDISKHTEATSGDSGGYLKSCRERENGDGQLMTDFSVCQLTTESEQLEPRGPSKPSAEDSNGNIELQREEAKEDFSETYCSLECTKPSACNPLRDNDSEGQSLESNDGCSLKTPRANNYLDKSIDEFDKYITDPKDTSKLDSLKIEQDLYISVRKTGEDSFSQSIKLVPHICNPVSDPSETSTEFGSVQRECNNFLADDSLLVYTEMQGLQEIELNDSPAPADPAAESCQDKYPQELDNQEQKLVANGTGFHSVTMDGVALESRKAVDVVNLSVSCTATCLPFSSVLKETPAMVGFSAKQAAFPITRQPLGSFGVVSSHSNDVDEDANERMLNFYQAKEKFKKEMKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPSGKLDFLMSERNQTDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNVIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKNALKDRHTGPVYAEMINNLLQPLIGAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "length": 1420 }, "evidence": [ { "id": "F1RRW0", "url": "https://omabrowser.org/oma/group/F1RRW0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8M1PSQ6-1", "protein_name": "Protein FAM135B", "gene_name": "fam135b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSEVQGTVEFSLELHKFHNVDLFQRGFYQVRAGLRVSPRVPHRITATTPGYTGECSFSNAGVHDGGVFSRIFQILYRNEEVTLEDHINFRLHLLLDGERVEEAVSEVDVQLKLDLHFTDNEQQLADISSVPVISSRTLGLHFHPQQGLHHHLPVMFDYFHLSVISVSIHASLVALHQPLISFARSGKGTWLGKGSPESEAPPSAMSVENLMFGAGYCKPVPTEGSFYVPSENCLQRAYTWHRRICKLLLAAHRALRSYYTTLMKEIPQLQHIQTEDLPLEETLNQLTIELQLQSGHEKVAEQISKDLTQLCAQLSALWTQFLESTVPNPYIRSYLAQEHHTLRVRRFSEAYFFTEHPKESSLTFQEELINRHAQVSTEMRNSDYLLRMPPLPVECLDIDGDWSSLPIIFEDRYVDTPCLDYNVVHEQNQAVLNSQPCFEPTRVKGQTASPAEKTQDTSLPATSPEEPPSEDCTEMPTYMTLTDHQDDDVTEHIKPRPQAETLTDHVEEADIDGCEFITTSSNSRIHSVDEVTCQYENDGNTMSVDTDDVIDNQEKTSCQKEAANESDHTSSQQTNVFNSGQPLLLVPTDLGELPDLTSLGSFEFLPTYNHDDNLETPGDTGSPDNQEPQTVFDNRHIQAPAKDYGGKDTSPGILLKATLPGTDPLVTSPSRNVIHQIRRLSETPPRGVFLGGAKLMNRSSSVISDSGIESEPSSVAWTLEGRGVVAGGRDILQSLARCRTAHQSSLEGLQTESHGSLPSATQASLTSISSLPYEEEEDRQLNTLTKSASAPQISSPDDTEEDRETPNQETRTVCEANQVTGTRCEANPMRQNKESANEVKRNLQMEETTQQDTTNVLVANHIRDEAANEVKQTLQEVTREDGNTTTNQEKRNVCVANQLRKSEVAANEVKQNLQGVFREDGNETSNQEIDIEESSNQDITDLTFVNPEMLLYQQFLMDSGKDATLEELTENSKDFQGNILLKEYLMDESTEICRCEDEYCEHKRKLESNQYHKDADDISVCHIHLNELEVASMENLPEPTTNDKRTHGIAANEKERPADPIEPPTNERDQQILEGQSRINKVPSTGLAFVNKKVVEVVNLSVSCAPTCLPFSSVLRDSPSVSGISTRQATSPITHQPLGSFGIISSNSFFGADQEINERMINFFKAKEALLRELVFRGTLYSDLPYLASEHPYFPPEEDDTEFEDGIHLVVCVHGLDGNSADLRLVKTFVELGLPGSRLDFLMSERNQTDTFADFDTMTDRLLDEIIQHIQLYNLTIHRISFIGHSLGNVIIRSVLTRPRFRCYLCKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDHTDPRQTFLYTLSKKPGLQFFKNVVLVASPQDRYVPFHSARIEMCRTALKDRTTGPVYTEMINNLLQPLLSAPNCRLIRQNVFHALPNTANTLIGRAAHIAVLDSELFLEKFLLVAGLNYFK", "length": 1475 }, "evidence": [ { "id": "F1RRW0", "url": "https://omabrowser.org/oma/group/F1RRW0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1LZ91-1", "protein_name": "Family with sequence similarity 135, member B", "gene_name": "Fam135b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEVQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIVGQTESSSLHSACVHESVVHSRIFQILYRNEEVSINDAMLFRVHLLLDGERVEDALSEVEFQLKVDLHYTDSEQQLRDVTGTPMISSRTLGLHFHPRRGLHHQVPVMFDYFHLSVISVAIHAALVALQQPLISFTRPGRGSWLGKGGPDTGPEQPTISLENLVFGAGYCKPTTSEGSFYVPSENCIQHAHKWHRDVCLLLLHAYRGLRLYFLVIMRDIPELPTMELEVLAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLASHLMALWTQFLDTVTLHSHVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSMDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPVSGHNLSVYPNFEVPVTSPAIMKLKGKEKSVINQKSSSRKEAPLSTTEAPELGSDEDVIQCPEMEENVSTQNPMDVCSESQVYLSIGEFQNRAGIPEDECWTGPRPDAVKDSLTDVDICRRSPGPEEGHTPALTYIDVESSNKNYPRAEPVLGLNVQHEPRGSRDSYGIVKTMPSKVLAGISQNNSISVNQTAALELRTLGRGVGQEGKPVLLSLKLTPAEPCDPLSTGLREALDTKPSLPDPGEEPEDLSVLSGVIKRSASIISDSGIESEPSSVAWSEARSRALEIPSDRDILHQVVRRHAHHRNSLEGGHTESNTSLPSAIQASLSSISSLPFEDEERELALTKLTKSVSAPQISSPEDTAEDSDTIKNTAGFSEDLDLSSKDNSSSRYSSPSYSGSRVQDVRAGHSLADIAVASDRPQGPGYMDIHKGNENHPDLQGPCCLDAMAENIPHVETKGLNLKIPCTTVLENPKTRSFHRTAVETAKGKAKELSLSKHMLSNNSISEVRAASHHRVPEISCAPAVGAGHLHSTGVQNGSLSVNDTMTLNRRHNASPEAKHEAGTVCPTVTHTIASPVSRNQELKAGTSISGSHLNSTEAFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGLSSKQSPAPITHQPLGSFGVVSTYSSELEEEVSERMFSFYQAKEKFKKELKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQMDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "length": 1403 }, "evidence": [ { "id": "F1RRW0", "url": "https://omabrowser.org/oma/group/F1RRW0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q49AJ0-1", "protein_name": "Protein FAM135B", "gene_name": "FAM135B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEIQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIAGQTESSSLHSACVHDSTVHSRVFQILYRNEEVPINDAVVFRVHLLLGGERMEDALSEVDFQLKVDLHFTDSEQQLRDVAGAPMVSSRTLGLHFHPRNGLHHQVPVMFDYFHLSVISVTVHAALVALQQPLISFTRPGRGSWLGKGGPDTGQEQSIISLENLVFGAGYCKPTSSEGSFYITSENCMQHAHKWHRDLCLLLLHAYRGLRLHFLVIMRDIPELPHTELEALAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLTSHMMTLWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPATGHNLSVYPNFDVPVTSPTIMNLKDKEDNCMVNSNLSFREDLVLSTIKPSQMDSDEEVIRCPEPGENVATQNHMDMCSESQVYISIGEFQNKAGVPEDECWTGQTSDAGTYPVADVDTSRRSPGPEDGQAPVLTYIDVKSSNKNPSRAEPLVAFNAQHESRSSRDKYGLDRTGLSKVVVGGSHQNAISSDKTTLHELSTLGKGIDQEGKMVLLSLKLTPSEPCDPLSSTLREPLDIRSSLKDSHTEEQEELSVLSGVIKRSSSIISDSGIESEPSSVAWSEARSRALELPSDREVLHPFVRRHALHRNSLEGGHTESNTSLPSGIQASLTSISSLPFEEDEREVALTKLTKSVSAPHISSPEEAAEDADTKQQDGGFAEPSDMHSKSQGSPGSCSQLCGDSGTDAGADHPLVEIVLDADNQQGPGYIDIPKGKGKQFDAQGHCLPDGRTENTPGVETKGLNLKIPRVIALENPRTRSLHRALEETPKGMPKDLNVGQQALSNSGISEVEGLSQHQVPELSCTSAADAINRNSTGQQSQSGSPCIMDDTAFNRGVNAFPEAKHKAGTVCPTVTHSVHSQVLKNQELKAGTSIMGSHLTSAETFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGFSSKQTLFPITHQPLGSFGVVSTHSSTLDEEVSERMFSFYQAKEKFKKELKIEGFLYSDLTVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQMDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "length": 1406 }, "evidence": [ { "id": "F1RRW0", "url": "https://omabrowser.org/oma/group/F1RRW0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAI6-1", "protein_name": "Protein FAM135B", "gene_name": "Fam135b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEVQGTVEFSVELHKFYNVDLFQRGYYQIRVTLKVSSRIPHRLSASIVGQSESSSLHSACVHESAVHSRVFQILYRNEEVSINDAMLFRVHLLLDGERVEDALSEVEFQLKVDLHFTDSEQQLRDVTGTPMISSRTLGLHFHPRRGLHHQVPVMFDYFHLSVISVAIHAALVALQQPLISFTRPGRGSWLGKGGPDTGPEQPTISLENLVFGAGYCKPTSSEGSFYVPSENCIQHAHKWHRDLCLLLLHAYQGLRLYFLVIMRDIPELPTMELEALAVEETLSQLCSELQMLNNPEKIAEQISKDLAWLASHLMALWTQFLDTVTLHSQVTTYLTQEHHTLRVRRFSEAFFYMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDRYVDCPVSGHNLSVYPNFDVPVTSPAIMNLKGKEKNLINQNSSSRKDIPLSTTEAPQLGSDEDVTRRPEVQENVSTWNPIDVCSESQVYLTIGEFQNRAGIPEDECWTGPRPDAVKDSLTDTDICSRSPGPDEGQTPALTYIDVQSSNKYCPRAELVQGINVQHEHRSSRESYGIVKTVPSKVVAGTSQNNSTSLNQTAALELRTLGRGVNQDGKPVLLSLKLTPAEPCDPPSTALREALDTKPSQPDHAEEPEDLSALSGVIKRSASIISDSGIESEPSSVAWSEARSRALELPSDRDVLHQVVRRHAHHRNSLEGGHTESNTSLPSGIQASLSSISSLPFEEEERELALNKLTKSVSAPQISSPEESAEGADTIKNTAGFSEDLDPSSKENSPPRHTSLSYGGSRVQDVRAGHSLADIALDSDRPQGPGYMDIPNDKGNHPELQEPCCLDGMAETPLHVETKGLNLKIPCTIVLENSKSRSFHRAAGETAKGKPEELSMSKCVLSNNSISEVRAASHHRVPEISCSPAVEAVNLNSTGVQNSSLSVNDTMTLNRRHNASLEAKHEAGTVCPTVTHTIASQVSRNQELKTGTSISGSHLNSTEAFTLDSLKAVEVVNLSVSCTATCLPFSSVPKETPARAGLSSKQNPAPITHQPLGSFGVVSTYSSKLEEEVSERMFSFYQAKEKFKKELKIEGFLYSDLSVLASDIPYFPPEEEEENLEDGIHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEIIQHIQLYNLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVLVASPQDRYVPFHSARIEMCKTALKDRHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFFLVAGLNYFK", "length": 1403 }, "evidence": [ { "id": "F1RRW0", "url": "https://omabrowser.org/oma/group/F1RRW0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1RRW0", "url": "https://www.uniprot.org/uniprotkb/F1RRW0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1030, "end_pos": 1032, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1177, "end_pos": 1179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1204, "end_pos": 1206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1254, "end_pos": 1256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1255, "end_pos": 1257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 736, "end_pos": 738, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RRW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRW0" }, { "id": "PF05057", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF676", "eco_id": "ECO_0000259", "start_pos": 1135, "end_pos": 1328, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], 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"MALHFQSLAELEVLCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPIEQRIDIRNYILNYVASQLKLAPFVIQALIQVIAKITKLGWFEVQKDQFVFREIIADVKKFLQGTVEHCVIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEVLAKPLNLQDQGQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITEAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCALLIQLFDQNAQNYQKLLHSASGLSMDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDSYSLSDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSISEGLTTLDTVVSSSCCTSLDYIVTYLFKHIAKEGKKPLRCREAAQAGQRLLHFMQQNPDVLQQMTSVLMNTIVFEDCRNQWSVSRPLLGLILLDEKHFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRCDGSTESCSLDMMS", "length": 1088, "header": "tr|F1RRY0-1|F1RRY0_PIG Isoform 1 of RAN binding protein 17 OS=Sus scrofa OX=9823 GN=RANBP17 PE=3 SV=5 CANONICAL=F1RRY0-1" }, "isoforms": [ { "isoform_ac": "F1RRY0-1", "url": "https://www.uniprot.org/uniprotkb/F1RRY0/entry", "sequence": { "sequence": "MALHFQSLAELEVLCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPIEQRIDIRNYILNYVASQLKLAPFVIQALIQVIAKITKLGWFEVQKDQFVFREIIADVKKFLQGTVEHCVIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKEVLAKPLNLQDQGQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITEAFITSRLESVAIVVRDNLDDPLDDTATVFQQLEQLCTVSRCEYEKTCALLIQLFDQNAQNYQKLLHSASGLSMDMAIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPQCSNEKIELAILWFLDQFRKTYVGDQLQRTSKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDSYSLSDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPILQRAIEQWYGEPACTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSISEGLTTLDTVVSSSCCTSLDYIVTYLFKHIAKEGKKPLRCREAAQAGQRLLHFMQQNPDVLQQMTSVLMNTIVFEDCRNQWSVSRPLLGLILLDEKHFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRCDGSTESCSLDMMS", "length": 1088, "header": "tr|F1RRY0-1|F1RRY0_PIG Isoform 1 of RAN binding protein 17 OS=Sus scrofa OX=9823 GN=RANBP17 PE=3 SV=5 CANONICAL=F1RRY0-1" }, "locus": { "chromosome": "16", "start_pos": 53160009, "end_pos": 52836633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018512.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018512.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018012.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018012.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RRY0", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0L397-1", "protein_name": "RAN binding protein 17", "gene_name": "Ranbp17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVELVTGYRRSTERGQSIPVRRGASTCYLVPTDVHKPLSKLAALYSQGPGTLAGIAGTVDIQSLAELEALCTHLYVGTDLNERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVTRINPLPVEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFREIIADVKKFLQGTVEHCIIGVIILSELTQEMNLVDYSRPSAKHRKVATSFRDTSLKDILVLACSLLKQVLAKPLNLQDQDQQSLVMQVLKLVLSCLSFDFLGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNSYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLEDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHSASGLAIDMAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTRLPRRTNEKIELAVLWFLDQFRKTYVGDQLQRTSKVVRPKNDVSRVPEKAWKIVKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTREHFPFLGISDTYSVSDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRCREAMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHTELCSLDMMS", "length": 1164 }, "evidence": [ { "id": "F1RRY0", "url": "https://omabrowser.org/oma/group/F1RRY0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99NF8-1", "protein_name": "Ran-binding protein 17", "gene_name": "Ranbp17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALHFQSLAELEVLCTHLYVGTDLTERIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVTRINPLPIEQRIDIRNYILNYVASQPKLAPFVIQALIQVIAKLTKLGWFEVQKDEFVFREIIADVKKFLQGTVEHCIIGVIILCELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDILVLACSLLKQVLAKPLNLQDQDQQSLVMQVLKLVLSCLNFDFLGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFSSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVLVKEYAEVIGLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSAEPHLLDTYAPEITKAFITSRLESVAIVVRDNLEDPLDDTATVFQQLEQLCTVSRCEYEKTCTLLVQLFDQNAQNYQKLLHAAPGLAVDMAIQEGRLAWLIYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTRLPHCTNEKIELAVLWFLDQFRKTYVGDQLQRTSKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRCEPVISRTLQFLSDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISETYNVGDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVSFETVLQIFNNNFKQEEVKRMLIGLARDLRGIAFALNTKTSYTMLFDWIYPAYLPVLQRAIERWYGEPACTTPILKLLAELMQNRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDKIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRSREAMQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFSELRASLINSQPLPKQEVLGQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGHTDLSSLDMMS", "length": 1088 }, "evidence": [ { "id": "F1RRY0", "url": "https://omabrowser.org/oma/group/F1RRY0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2T7-1", "protein_name": "Ran-binding protein 17", "gene_name": "RANBP17", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALHFQSLAELEVLCTHLYIGTDLTQRIEAEKALLELIDSPECLSKCQLLLEQGTTSYAQLLAATCLSKLVSRVSPLPVEQRMDIRNYILNYVASQPKLAPFVIQALIQVIAKITKLGWFEVQKDQFVFREIIADVKKFLQGTVEHCIIGVIILSELTQEMNLVDYSRPSAKHRKIATSFRDTSLKDVLVLACSLLKEVFAKPLNLQDQCQQNLVMQVLKLVLNCLNFDFIGSSADESADDLCTVQIPTTWRTIFLEPETLDLFFNLYHSLPPLLSQLALSCLVQFASTRRSLFNSPERAKYLGNLIKGVKRILENPQGLSDPGNYHEFCRFLARLKTNYQLGELVMVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTLWQRMVASVPFVKSTEPHLLDTYAPEITKAFITSRLDSVAIVVRDHLDDPLDDTATVFQQLEQLCTVSRCEYEKTCALLVQLFDQNAQNYQKLLHPYSGVTVDITIQEGRLAWLVYLVGTVVGGRLTYTSTDEHDAMDGELSCRVFQLISLMDTGLPRCCNEKIELAILWFLDQFRKTYVGDQLQRTSKVYARMSEVLGITDDNHVLETFMTKIVTNLKYWGRYEPVISRTLQFLNDLSVGYILLKKLVKIDAVKFMLKNHTSEHFPFLGISDNHSLSDFRCRTTFYTALTRLLMVDLGEDEDEFENFMLPLTVAFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFALNTKTSYTMLFDWMYPTYLPLLQNAVERWYGEPTCTTPILKLMAELMQNRSQRLNFDVSSPNGILLFREASKMVCTYGNQILSLGSLSKDQIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFIINLEPPVLMYVLTSISEGLTTLDTVVSSSCCTSLDYIVTYLFKHIAKEGKKPLRCREATQAGQRLLHFMQQNPDVLQQMMSVLMNTIVFEDCRNQWSVSRPLLGLILLNEKYFSELRASLINSQPLPKQEVLAQCFRNLMEGVEQNLSVKNRDRFTQNLSVFRRDVAEALRSDGNTEPCSLDMMS", "length": 1088 }, "evidence": [ { "id": "F1RRY0", "url": "https://omabrowser.org/oma/group/F1RRY0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "F1RRY0", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RRY0", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1RRY0", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" } ], "pmid": "" }, { "name": "nuclear export signal receptor activity", "id": "GO:0005049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005049", "evidence": [ { "database": "UniProtKB", "id": "F1RRY0", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein export from nucleus", "id": "GO:0006611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006611", "evidence": [ { "database": "UniProtKB", "id": "F1RRY0", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1049, "end_pos": 1051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1061, "end_pos": 1063, "annotation": "n_glycosylation_sequon" }, { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 641, "end_pos": 643, "annotation": "n_glycosylation_sequon" }, { "start_pos": 779, "end_pos": 781, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RRY0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1088, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RRY0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RRY0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RRY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRY0" }, { "id": "SM00913", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Importin N-terminal", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 95, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1049, "end_pos": 1051 }, { "start_pos": 1061, "end_pos": 1063 }, { "start_pos": 360, "end_pos": 362 }, { "start_pos": 641, "end_pos": 643 }, { "start_pos": 779, "end_pos": 781 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RRY9-1", "uniprot_ac": "F1RRY9", "uniprot_id": "F1RRY9_PIG", "mass": { "chemical_mass": 38265.0, "monoisotopic_mass": 38265.0 }, "refseq": {}, "gene_names": [ { "name": "EEIG1", "type": "recommended", "evidence": [ { "id": "F1RRY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRY9" } ] } ], "protein_names": [ { "name": "Estrogen-induced osteoclastosis regulator 1", "type": "synonym", "evidence": [ { "id": "F1RRY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RRY9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RRY9", "url": "https://www.uniprot.org/uniprotkb/F1RRY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EEIG1", "url": "https://www.uniprot.org/uniprotkb/F1RRY9", "locus": { "chromosome": "1", "start_pos": 268427708, "end_pos": 268465786, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005631", "url": "https://www.ensembl.org/id/ENSSSCG00000005631" } ] } } ], "crossref": [ { "id": "F1RRY9", "url": "https://alphafold.ebi.ac.uk/entry/F1RRY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005631", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005631", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RPPVKQN", "url": "https://omabrowser.org/oma/group/RPPVKQN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21456:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21456:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RRY9", "url": "https://www.uniprot.org/uniprotkb/F1RRY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RRY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RRY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFLMKKKKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSREEVQENCVRWRKRFTFVCKMSANPATGLLDPCVFRVSVRKELKGGKAYSKLGFADLNLAEFAGSGSTVRCCLLEGYDTKNTRQDNSILKVTIGMFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTGSSGSSSTNSLTGSRPSKARPTILSSGVPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMAVEGPEGGEREHRPPRSRRGPPGPRTCLTAPFGGRRTRWRATRPGWMTLGSMLTTSWRRLCRAKTSLMAAILRTATSGCS", "length": 354, "header": "tr|F1RRY9-1|F1RRY9_PIG Isoform 1 of Estrogen-induced osteoclastosis regulator 1 OS=Sus scrofa OX=9823 GN=EEIG1 PE=3 SV=2 CANONICAL=F1RRY9-1" }, "isoforms": [ { "isoform_ac": "F1RRY9-1", "url": 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153924", "url": "https://www.ncbi.nlm.nih.gov/gene/100153924", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050527", "database": "InterPro", "categories": [ "Protein 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480658", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480658", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RS18", "url": "https://www.uniprot.org/uniprotkb/F1RS18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS18-1", "url": "https://www.uniprot.org/uniprotkb/F1RS18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEEEPPSPDLMLPQEEGTEEEGMAAGLLTAGPQGSTPFSSVTVAFTQEGWRQLVPAPRDRFKEGIPEKSRNLVLLGLPVSEPGVNAQLEQRESSWMLEREGLRAACPDWKIVSESPPEQDISEDSFQDPSVDSGESDHRSSELGKGFSLRPVLSPQQRVPTEVRPRKCETHTESFRKNSDIITSHRAKPYTCNECGKAFSYCSSLSQHQKSHTGEKPYECNECGKAFSQSSSLIQHQRIHTGEKPYKCSECGRAFSQNANLTKHQRTHTGEKPYKCSECEKAFSDCSALVQHQRIHTGEKPYECSDCGKAFRHSANLTNHQRTHTGEKPYKCSECGKAFSYCAAFIQHQRIHTGEKPYKCSACGKAFSQSANLTNHQRTHTGEKPYKCSECGKAFSQSTNLIIHQKTHTGEKPYKCNECGKFFSESSALIRHHIIHTGEKPYECNECGKAFNQSSSLSQHQRIHTGVKPYECSECGKAFRCSSAFIRHQRLHAGE", "length": 496, "header": "tr|F1RS18-1|F1RS18_PIG Isoform 1 of Zinc finger protein 79 OS=Sus scrofa OX=9823 GN=ZNF79 PE=3 SV=1 CANONICAL=F1RS18-1" }, "isoforms": [ { "isoform_ac": "F1RS18-1", "url": "https://www.uniprot.org/uniprotkb/F1RS18/entry", "sequence": { "sequence": 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} ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RS18", "url": "https://www.uniprot.org/uniprotkb/F1RS18" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153924", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153924", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BBB9-1", "protein_name": "Zinc finger protein 79", "gene_name": "ZNF79", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLEEGEPPSPDPALLQEEDTEEEGMAAGLLTAGPQGSTPFSNVTVDFTQGGWRQLAPAPRDRFEEGMPENSRNLVLLGLPVSQPGMNSQLEQREGSWMLERDGLRNACPDWKIISESPPEQDISEESFQDPSVEMPSGVSEHRNSELGKSLNMRPVLSPQQRVPTEVRSHKCDTHAESFGNNAGTVKLHRVKPYTCNECGKAFSYCSSLSQHQKSHTGEKPYECNECGKAFSQSSSLIQHQRIHTGEKPYKCSECGRAFSQNANLTKHQRTHTGEKPYKCTECEKAFSDCSALVQHQRIHTGEKPYECSDCGKAFRHSANLTNHQRTHTGEKPYKCRECGKAFSYCAAFIQHQRIHTGEKPYKCNACGKAFSQSANLTNHQRTHTGEKPYKCSECGKAFSQSTNLIIHQKTHTGEKPYKCNDCGKFFSESSALIRHHIIHTGEKPYECNECGKAFNQSSSLSQHQRIHTGVKPYECRECGKAFRCSSAFIRHQRLHAGE", "length": 499 }, "evidence": [ { "id": "F1RS18", "url": "https://omabrowser.org/oma/group/F1RS18/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q15937-1", "protein_name": "Zinc finger protein 79", "gene_name": "ZNF79", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLEEGVLPSPGPALPQEENTGEEGMAAGLLTAGPRGSTFFSSVTVAFAQERWRCLVSTPRDRFKEGIPGKSRSLVLLGLPVSQPGMNSQLEQREGAWMLEGEDLRSPSPGWKIISGSPPEQALSEASFQDPCVEMPPGDSDHGTSDLEKSFNLRPVLSPQQRVPVEARPRKCETHTESFKNSEILKPHRAKPYACNECGKAFSYCSSLSQHQKSHTGEKPYECSECGKAFSQSSSLIQHQRIHTGEKPYKCSECGRAFSQNANLTKHQRTHTGEKPYRCSECEKAFSDCSALVQHQRIHTGEKPYECSDCGKAFRHSANLTNHQRTHTGEKPYKCSECGKAFSYCAAFIQHQRIHTGEKPYRCAACGKAFSQSANLTNHQRTHTGEKPYKCSECGKAFSQSTNLIIHQKTHTGEKPYKCNECGKFFSESSALIRHHIIHTGEKPYECNECGKAFNQSSSLSQHQRIHTGVKPYECSECGKAFRCSSAFVRHQRLHAGE", "length": 498 }, "evidence": [ { "id": "F1RS18", "url": "https://omabrowser.org/oma/group/F1RS18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": 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"https://www.uniprot.org/uniprotkb/F1RS27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPGASSPEKQDKENLVGIKSKGLGVCGWILFSLSFLLMVITFPVSVWMCLKIIKEYERAVVFRLGRIQAQKAKGPGLILVLPCVDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARARVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLTTVATEKNSTIVFPLPMNVLEGIGGISYDNNHKKVPNKA", "length": 292, "header": "tr|F1RS27-1|F1RS27_PIG Isoform 1 of Stomatin like 3 OS=Sus scrofa OX=9823 GN=STOML3 PE=3 SV=3 CANONICAL=F1RS27-1" }, "isoforms": [ { "isoform_ac": "F1RS27-1", "url": "https://www.uniprot.org/uniprotkb/F1RS27/entry", "sequence": { "sequence": "MDPGASSPEKQDKENLVGIKSKGLGVCGWILFSLSFLLMVITFPVSVWMCLKIIKEYERAVVFRLGRIQAQKAKGPGLILVLPCVDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARARVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLTTVATEKNSTIVFPLPMNVLEGIGGISYDNNHKKVPNKA", "length": 292, "header": "tr|F1RS27-1|F1RS27_PIG Isoform 1 of Stomatin like 3 OS=Sus scrofa OX=9823 GN=STOML3 PE=3 SV=3 CANONICAL=F1RS27-1" }, "locus": { "chromosome": "11", "start_pos": 14146153, "end_pos": 14133184, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010263.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010263.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009996.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009996.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RS27", "url": "https://www.uniprot.org/uniprotkb/F1RS27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A096MJY2-1", "protein_name": "Stomatin like 3", "gene_name": "Stoml3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSPEKLEKNNLVGTNKSRLGVCGWILFFLSFLLMLITFPVSIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILSGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLTTVATEKNSTIVFPLPMNILEGIGGISYDNNKKVTAKA", "length": 287 }, "evidence": [ { "id": "F1RS27", "url": "https://omabrowser.org/oma/group/F1RS27/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8C2LR82-1", "protein_name": "Stomatin-like protein 3", "gene_name": "Stoml3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDSPEKLDKNSLVGINKNRLGVCGWILFSLSMLLMLITFPISIWMCLKIIKEYERAVVFRLGRIRADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILSGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARARVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLTTVATEKNSTIVFPLPMNILEGIGGISYDNNKKVNAKA", "length": 287 }, "evidence": [ { "id": "F1RS27", "url": "https://omabrowser.org/oma/group/F1RS27/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MCB3-1", "protein_name": "Stomatin like 3", "gene_name": "STOML3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILILPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTRTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKALKSASMVLAESPAALQLRYLQTLATVATEKNSTIVFPLPINMLEGIDGITYDNHKKVPNRA", "length": 253 }, "evidence": [ { "id": "F1RS27", "url": "https://omabrowser.org/oma/group/F1RS27/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1P588-1", "protein_name": "Stomatin like 3", "gene_name": "STOML3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDPIGETPKKNNTEHLIADRREGIGVCGWILVSLSFLLVLITFPVSIWACIKVVREYERAVVFRLGRILSKKAKGPGLILILPCTDTFIKVDLRTVTCNIPPQEILTKDAVTTQVDGVVYYRIRSAVCAVANVNNVHSATFLLAQTTLRNVLGTQTLAQLLAGREEIAHSIQAILDSATEQWGIKVARVEIKDVRIPVAMQRVMAAEAEATQEARAKAVAAEGEMNASKALKQASMVLAESPAGLQLRYLQTLTTLAAENNSTIVFPLPINLLDGFGQKNRGG", "length": 283 }, "evidence": [ { "id": "F1RS27", "url": "https://omabrowser.org/oma/group/F1RS27/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6PE84-1", "protein_name": "Stomatin-like protein 3", "gene_name": "Stoml3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSPEKLEKNNLVGTNKSRLGVCGWILFFLSFLLMLVTFPISVWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTQTLSQILSGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPVALQLRYLQTLTTVATEKNSTIVFPLPMNILEGIGGISYGNNKKVTAKA", "length": 287 }, "evidence": [ { "id": "F1RS27", "url": 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"ENSSSCG00000011197", "url": "https://www.ensembl.org/id/ENSSSCG00000011197" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011197", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011197", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00322", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00322", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100151869", "url": "https://www.ncbi.nlm.nih.gov/gene/100151869", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WIDFFIP", "url": "https://omabrowser.org/oma/group/WIDFFIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46505:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46505:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00175", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00175", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020927007", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020927007", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RS78", "url": "https://www.uniprot.org/uniprotkb/F1RS78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RS78-1", "url": "https://www.uniprot.org/uniprotkb/F1RS78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLMIPGLLRGSVGAICLQAASWRLTHRTLRHLTLSSLMKSKRKTDHLERTADVLRREVVSVAKVCGVAHESPSVKRLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERIIELAVKYTNHPPALWIHNQCTLDSEVAVRVGGEFFFDPQPADASRNLVLIAGGVGINPLLSILRHVADLHREWANKGSGYKVGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQISADLKPYITEGRLTEKEIRDHISKETLFYLCGPPPMTDFFSKELARSHIPREHICFEKWW", "length": 309, "header": "tr|F1RS78-1|F1RS78_PIG Isoform 1 of Oxidoreductase NAD-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=OXNAD1 PE=4 SV=3 CANONICAL=F1RS78-1" }, "isoforms": [ { "isoform_ac": "F1RS78-1", "url": "https://www.uniprot.org/uniprotkb/F1RS78/entry", "sequence": { "sequence": "MTLMIPGLLRGSVGAICLQAASWRLTHRTLRHLTLSSLMKSKRKTDHLERTADVLRREVVSVAKVCGVAHESPSVKRLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERIIELAVKYTNHPPALWIHNQCTLDSEVAVRVGGEFFFDPQPADASRNLVLIAGGVGINPLLSILRHVADLHREWANKGSGYKVGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQISADLKPYITEGRLTEKEIRDHISKETLFYLCGPPPMTDFFSKELARSHIPREHICFEKWW", "length": 309, "header": "tr|F1RS78-1|F1RS78_PIG Isoform 1 of Oxidoreductase NAD-binding domain-containing protein 1 OS=Sus scrofa OX=9823 GN=OXNAD1 PE=4 SV=3 CANONICAL=F1RS78-1" }, "locus": { "chromosome": "13", "start_pos": 3436671, "end_pos": 3404660, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012262.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012262.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011947.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011947.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RS78", "url": "https://www.uniprot.org/uniprotkb/F1RS78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K466-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "Oxnad1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHVLIPGLSRGSVGAICTQAASWALPTSTLRSLTLASVMRSRRKTDHLERTATVLRREVMAAAKVCEITHESPSVKSLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPQQLERERIIELAVKYTNHPPAVWVHNKCTLDSEVALRVGGEFFFDPQPTDAPRNLVLIAGGVGINPLLSILRHSADLHRDHKEKRRGYDIGTIKLFYSAKNTSELLFKKNILDLVHEFPEKIACSFHVTKQTTQISSELKPYVTDGRITEKEIREHISAETLFYVCGPPPMTDFFSKHLESSHVPKEHICFEKWW", "length": 310 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8C2MXL7-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "Oxnad1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAHAVFIPGLSRGTALWRLTASTLRHLTLTSIMKSKRKTDHLERTASALRREVVASAKVCEIAHESPTVKSLRLLVADKAFSFKAGQWVDFFIPGVSVVGGFSICSSPQLLEQERMIELAVKYTNHPPAIWVHNKCTLDSEVALRVGGEFFFDPQPTEAPRNLVLIAGGVGINPLLSILRHSADLHRDQANKGSSYEIGKIKLFYSAKNTSELLFKKNILDLVNEFPEKITCSLHVTKQTAQISEELKPYITEGRITEKEISNHVSAGTLFYICGPPPMTDFFSKQLEDSHVPKEHICFEKWW", "length": 303 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XF29-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARVTTYMGFTIPHLLRSACRLCPAHSALVVLRHSASCYCTANGTIQSKRKMDHLERTANNFRQEVISQAKVCGITNESETVKRLRLAITNKDFTFKAGQWVDFFIPGVSVIGGFSMCSSPGLLEREGVLELAVKYTDHPPAHWIHTECTLDSEVALRVGGDFFFDPQPGDTPVKLVLIAGGVGINPLFSILLHVADLHGYQESKGNGYKMGTVKLYYSAKNTSELLFKKNILGLMSAFPGKITCRFHVTQQSSPICEELQPHVTEGRISEKDLEKHVSKDTLWYICGPPPMIESISELLYNSGVPRNCVFFEKWW", "length": 316 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A3KP77-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "oxnad1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSRRRTDHLERTASVHRQMELFSARVCDIISESDTVKRLRLEVAHPDFSFRAGQWVDFFIPGVDTVGGFSICSSPGLLKREGAIELAVKYARHPPAHWIHTECSVDSQVAVRVGGNFYFDPQPSNPVVDLLLVAGGVGINPLYSILLHAADLHRHTHSHRYTPGHTHLCYSAKNTTELLFKDTIIDICHERPDKFSCHFHVTQQSSDIEPQLQPYTIRGRISAEELQRYVDPERTLCYLCGPPPMIEKVSSDLQSTGLPEDRILFEKWW", "length": 270 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q58DM7-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVVIPRLLRGSLGAICTQAALLRSTPSAFRYLTRSSVMKSKRRPDHLERTADVVRQEVVSAAKVCGVASESPSVKRLCLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERMIELAVKHANHPPALWIHNQCTLDSEVAVRVGGEFFFDPKPTDASRNLVLIAGGVGINPLLSILRHAADLLRERASKGQGYEMGTVRLLYSAKDTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQITADLRPYITEGRITQKEIRDHISKETLFYICGPPPMTDFFSKELESSRVPREHICFEKWW", "length": 309 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VE38-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "Oxnad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAHVALIPGLSRGSVGAVCTQAASWGLKASTLRHLTLASIIKSRRKTDHLERTASVLRREVMAAAKVCEITHESPSVKSLRLLVADKDFSFKAGQWVDFFIPGVSVVGGFSICSSPQRLERDRIIELAVKYADHPPAVWVHNKCTLDSEVALRVGGEFFFDPQPTDAPRNLILIAGGVGINPLLSILRHSADLHRDHADKGRSYEIGTVKLFYSAKNTSELLFKKDILDLVHEFPEKISCSFHVTKQTAQISAELKPYVTDGRITEKEIRDHISAETLFYVCGPPPMTDFFSKHLESCHVPKEHICFEKWW", "length": 311 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96HP4-1", "protein_name": "Oxidoreductase NAD-binding domain-containing protein 1", "gene_name": "OXNAD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRREIVSAAKVCGAASESPSVKSLRLLVADQDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLLEQERVIELAVKYTNHPPALWVHNTCTLDCEVAVRVGGEFFFDPQPADASRNLVLIAGGVGINPLLSILRHAADLLREQANKRNGYEIGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIACSLHVTKQTTQINAELKPYITEGRITEKEIRDHISKETLFYICGPPPMTDFFSKQLENNHVPKEHICFEKWW", "length": 312 }, "evidence": [ { "id": "F1RS78", "url": "https://omabrowser.org/oma/group/F1RS78/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "F1RS78", "url": "https://www.uniprot.org/uniprotkb/F1RS78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RS78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RS78" }, { "id": "PS51384", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51384" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAD-binding FR-type", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 161, "start_aa": "His", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RSA3-1", "uniprot_ac": "F1RSA3", "uniprot_id": "F1RSA3_PIG", "mass": { "chemical_mass": 76092.0, "monoisotopic_mass": 76092.0 }, "refseq": {}, "gene_names": [ { "name": "ASTE1", "type": "recommended", "evidence": [ { "id": "F1RSA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSA3" } ] } ], "protein_names": [ { "name": "Asteroid homolog 1", "type": "synonym", "evidence": [ { "id": "F1RSA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSA3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RSA3", "url": "https://www.uniprot.org/uniprotkb/F1RSA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASTE1", "url": "https://www.uniprot.org/uniprotkb/F1RSA3", "locus": { "chromosome": "13", "start_pos": 1449855, "end_pos": 1435678, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011182", "url": "https://www.ensembl.org/id/ENSSSCG00000011182" } ] } } ], "crossref": [ { "id": "F1RSA3", "url": "https://alphafold.ebi.ac.uk/entry/F1RSA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011182", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011182", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15665", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15665", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15665:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15665:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27698", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27698", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RSA3", "url": "https://www.uniprot.org/uniprotkb/F1RSA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSA3-1", "url": "https://www.uniprot.org/uniprotkb/F1RSA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGIRGLMSFVEDHSNEFFTDLKLRDTKIIIDGYALFHRLCFNSNLELRYGGDYDSFADVVQKFFEALFVCKICPYVVLDGGCDISDKKLKTLKDRAREKIQMAHSLSVGGGGCVCPLLIREVFIQVLIKLQVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKSGFCPLNSFQWRNVNTVKGTRDHYIPAKCFSLDALCRHFGHMNKALLPLFAVLCGNDHINLPIVETFLSQVRPPLGAPSSKGRRHHRVLGLLNWLSCFADPTEALDNVLKHLPKKSRASVEELLCCSMEEYLQSQVRLQDFFQQGTYSCPDTLNRGFPPWVLVALARGQLSPFVSDALVLRRTILHTQVENMQRINAHRVSLPIRQVIYGLLANVSPPSGDMAWNRQPLQPRAFSEVERINKNIKTSVVDAAELPKDYSDLSRLTELSLARRQMLLLETLKVKQAILDPIPPALKLPIAVSCYWVQHSEVKAKLQHLQALLLGMLLGPLHTTINSPEEEALRGGGAKMLYEELQRVKAQPPGQGLDLDAAHVFCQWQSCLQMGLYLNQLLSSPLPEPDLPRLYSGRLVHGLCRQLLTAASVESLLSACPEAQQLYEQLFNAMRSYAPAELFLPQGKSTSKKKRQKKQGNSLSKNRVGTALDARGWHERSNRFGPLMGALEEHTDGLEL", "length": 677, "header": "tr|F1RSA3-1|F1RSA3_PIG Isoform 1 of Asteroid homolog 1 OS=Sus scrofa OX=9823 GN=ASTE1 PE=3 SV=4 CANONICAL=F1RSA3-1" }, "isoforms": [ { "isoform_ac": "F1RSA3-1", "url": "https://www.uniprot.org/uniprotkb/F1RSA3/entry", "sequence": { "sequence": "MGIRGLMSFVEDHSNEFFTDLKLRDTKIIIDGYALFHRLCFNSNLELRYGGDYDSFADVVQKFFEALFVCKICPYVVLDGGCDISDKKLKTLKDRAREKIQMAHSLSVGGGGCVCPLLIREVFIQVLIKLQVCFVQCFSEADRDIMTLANHWNCPVLSSDSDFCIFDLKSGFCPLNSFQWRNVNTVKGTRDHYIPAKCFSLDALCRHFGHMNKALLPLFAVLCGNDHINLPIVETFLSQVRPPLGAPSSKGRRHHRVLGLLNWLSCFADPTEALDNVLKHLPKKSRASVEELLCCSMEEYLQSQVRLQDFFQQGTYSCPDTLNRGFPPWVLVALARGQLSPFVSDALVLRRTILHTQVENMQRINAHRVSLPIRQVIYGLLANVSPPSGDMAWNRQPLQPRAFSEVERINKNIKTSVVDAAELPKDYSDLSRLTELSLARRQMLLLETLKVKQAILDPIPPALKLPIAVSCYWVQHSEVKAKLQHLQALLLGMLLGPLHTTINSPEEEALRGGGAKMLYEELQRVKAQPPGQGLDLDAAHVFCQWQSCLQMGLYLNQLLSSPLPEPDLPRLYSGRLVHGLCRQLLTAASVESLLSACPEAQQLYEQLFNAMRSYAPAELFLPQGKSTSKKKRQKKQGNSLSKNRVGTALDARGWHERSNRFGPLMGALEEHTDGLEL", "length": 677, "header": "tr|F1RSA3-1|F1RSA3_PIG Isoform 1 of Asteroid homolog 1 OS=Sus scrofa OX=9823 GN=ASTE1 PE=3 SV=4 CANONICAL=F1RSA3-1" }, "locus": { "chromosome": "13", "start_pos": 1449855, "end_pos": 1437181, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012245.5", "url": 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Specifically catalyzes mono-, di- or tri-methylation of the exposed alpha-amino group of the Ala, Gly or Ser residue in the [Ala/Gly/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Some of the substrates may be primed by NTMT2-mediated monomethylation. Catalyzes the trimethylation of the N-terminal Gly in CENPA (after removal of Met-1). Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. 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"database": "Ensembl Peptide", "id": "ENSSSCP00000050980.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050980.2" } ] } }, { "isoform_ac": "F1RSD2-1", "url": "https://www.uniprot.org/uniprotkb/F1RSD2/entry", "sequence": { "sequence": "MAHLGAHFAFRSRWQKTDDELCRHSMSFILHKAICNDFFQSYLYLLENIPLVKLYALTSQVINGEMQFYARAKLFYQEVPATEEGMMGNFIELSDPDIEASREFLRKFVGGPGRAGTDCALDCGSGIGRVSKHVLLPVFNTVELVDMMESFLLEAQNYLQVKGDKVESYHCQSLQEFTPPLGRYDVIWIQWVSGYLTDKDLLAFLCRCRDGLKENGIIILKDNVAREGCIFDLSDSSVTRDMDIFRSLFRKSGLVVLGQKKQEGFPEQCIPVWMFALHSDGRS", "length": 283, "header": "tr|F1RSD2-1|F1RSD2_PIG Isoform 1 of N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Sus scrofa OX=9823 GN=NTMT2 PE=3 SV=1 CANONICAL=F1RSD2-1" }, "locus": { "chromosome": "4", "start_pos": 80877469, "end_pos": 80858924, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006881.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006881.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006693.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006693.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSD2", "url": "https://www.uniprot.org/uniprotkb/F1RSD2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157210", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157210", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "N-terminal protein N-methyltransferase activity", "id": "GO:0071885", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071885", "evidence": [ { "database": "UniProtKB", "id": "F1RSD2", "url": "https://www.uniprot.org/uniprotkb/F1RSD2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RSD2", "url": "https://www.uniprot.org/uniprotkb/F1RSD2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": 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"https://www.orthodb.org/?gene=F1RSK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19432", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19432", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19432:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19432:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013851903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "35039", "url": "https://www.rhea-db.org/rhea/35039", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "72135", "url": "https://www.rhea-db.org/rhea/72135", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSK5-1", "url": "https://www.uniprot.org/uniprotkb/F1RSK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKMAPQNADAESMQVQELPVALPDLKPGGSEAEPRDETISEGSIDRIPVRLWVMHGAVMFGREFCYAMETALVTPILLQIGLPEQYYSLTWFLSPVLGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGAALFLNGSAIGLSLGDVPNRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIVFTVSVALHLLSIEEEQYSPQQERSVEAADALAPGLRASVLDGGPLFPDEVQSEHELALDYLDAGLARSKSDSVLHVPDAALDLEPELLFLRDIEPSIFQDASYPSTPRSTSQELARARPPRLPPLRREPAGEDETLLENHLDAAQLPNGGGSPPCDGLVGFSRADVKPPVASGSVRRRRHMFRRQASSTFSYYGKIGSHRYRYRRANAVVLIKPSRSMSDLYDLQKRQRQRCRRRNQSGATTSSGDTESEEGEGETTVRLLWLSMLKMPKELVRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKAPSNSTAWQAYNSGVKMGCWGLVIYAATGATCSALLQKYLDNYDLSIRVIYVLGTLGFSLGTAVMAMFANVYVAMVMISTMGVVSMSISYCPYALLGQYHDIKEYVQHSPGSSRRGFGIDCAILSCQVYISQILVASALGGVVDAVGTVRVIPMVASVGSFLGFLTATFLVIYPEVSEEAKEEQKGLSSQPLGEGGSGGGEKPTVLRLSRKEGPQGPVETESMV", "length": 772, "header": "tr|F1RSK5-1|F1RSK5_PIG Isoform 1 of Polyamine-transporter SLC45A4 OS=Sus scrofa OX=9823 GN=SLC45A4 PE=3 SV=5 CANONICAL=F1RSK5-1" }, "isoforms": [ { "isoform_ac": "F1RSK5-1", "url": "https://www.uniprot.org/uniprotkb/F1RSK5/entry", "sequence": { "sequence": "MKMAPQNADAESMQVQELPVALPDLKPGGSEAEPRDETISEGSIDRIPVRLWVMHGAVMFGREFCYAMETALVTPILLQIGLPEQYYSLTWFLSPVLGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGAALFLNGSAIGLSLGDVPNRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIVFTVSVALHLLSIEEEQYSPQQERSVEAADALAPGLRASVLDGGPLFPDEVQSEHELALDYLDAGLARSKSDSVLHVPDAALDLEPELLFLRDIEPSIFQDASYPSTPRSTSQELARARPPRLPPLRREPAGEDETLLENHLDAAQLPNGGGSPPCDGLVGFSRADVKPPVASGSVRRRRHMFRRQASSTFSYYGKIGSHRYRYRRANAVVLIKPSRSMSDLYDLQKRQRQRCRRRNQSGATTSSGDTESEEGEGETTVRLLWLSMLKMPKELVRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKAPSNSTAWQAYNSGVKMGCWGLVIYAATGATCSALLQKYLDNYDLSIRVIYVLGTLGFSLGTAVMAMFANVYVAMVMISTMGVVSMSISYCPYALLGQYHDIKEYVQHSPGSSRRGFGIDCAILSCQVYISQILVASALGGVVDAVGTVRVIPMVASVGSFLGFLTATFLVIYPEVSEEAKEEQKGLSSQPLGEGGSGGGEKPTVLRLSRKEGPQGPVETESMV", "length": 772, "header": "tr|F1RSK5-1|F1RSK5_PIG Isoform 1 of Polyamine-transporter SLC45A4 OS=Sus scrofa OX=9823 GN=SLC45A4 PE=3 SV=5 CANONICAL=F1RSK5-1" }, "locus": { "chromosome": "4", "start_pos": 2518679, "end_pos": 2484494, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006510.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006510.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006339.5", "url": "https://www.ensembl.org/id/ENSSSCP00000006339.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NU91-1", "protein_name": "Polyamine-transporter SLC45A4", "gene_name": "SLC45A4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVMKMAPQNADSESMQVQDLPVAQLQKPENKENESREETISEGSIDRIPIRLWVMHGAVMFGREFCYAMETALVTPVLLQIGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRPFILALCIGVLFGVALFLNGSVIGLAIGDVPDKQPIGIVLTVLGVVVLDFCADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYMLGGLDWTQTFLGGIFKSQEQVLFFFAAIIFSVSVALHLFSIEEEQYNPQQDRIDEEGDTLSSVKFSGSLPPLNRLNVISEEEPYGASMFHDEVQSEHDLNMEFLEVNIVRSKSDSVLHMPDATLEIESELLFLHDIEPSIFQDASYPNTPHNTSQEIMKSKLNHLSAFLRDNEKEEEMLLDNHLNEDKVPNMNGSLPKEFLNGHARIGMKQSSTSNSMRRRRHMFYRQPSYTFSYYGKIGSHRYRFRRANAIVLIKSSRSMNDIYDMQKRQRQRYRHRNQSGTTNSSGDTESEEGETETTVRLLWLSMLKMPKELLRLCVCHLLTWFSIIAEAVFYTDFMGQVIFQGDPKAPSNSTELHAYNAGVQMGCWGLVIYAATAAVCSALLQKYLDNYDLSIKVIYILGTLGFSLGTAVMAIFPNVYVTMIMISTMGIVSMSISYCPYALLGQYHDIKEYIHHSPGNSKRGFGIDCAILSCQVYISQILVASALGSVVDAVGTVRVIPMVASVGSFLGFLTATFLVIYPEVNEEPKEEQKGLGPPETTEGNSTGAEKPTVLKLTRKGTTTSELEGESAV", "length": 787 }, "evidence": [ { "id": "F1RSK5", "url": "https://omabrowser.org/oma/group/F1RSK5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ADC6-1", "protein_name": "Polyamine-transporter SLC45A4", "gene_name": "Slc45a4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKMAPQNADSESMQVQELPVPLPDPQKPRDPAAETQEETTSEASIDRIPTRLWVMHGAVMFGREFCYAMETALVTPILLQIGLPEKYYSLTWFLSPVLGLIFTPLIGSASDRCTLSWGRRRPFILVLCVGVLIGVALFLNGSAIGLALGDVPSRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGKDPCQAPGLGGAIGYVLGGLDWTQTFLGDWFQTQNQVLFFFAAVFFSVSVALHLFSIEEEQYNPQQDRGPEDATLPSTGLQPGAPAPAPRLSSLGGGMQDGSPPFPDEVQSEHELSLDYLDVDIVRSKSDSVLHMADSTLDMEPQLLFLHDIEPSIFQDASYPSTPQSTSQELLRAKLPRLSTFLRESTKEDDTLLDNHLNEAKVPNGRGSPPMNPLSHSKVDLKPSVTSSSMRRRRHMFHRQSSSTFSYYGKIGSHCYRYRRANAVVLIKPSRSMSDLYDLQQRQRSRHRNQSGATASSGDTESEEGETETTVRLLWLSMLKMPKELMWLCLCHLLTWFSVIAEAVFYTDFMGQVIFKGNPQAPSNSTKWHAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSIRIIYMLGTLGFSVGTAVMAMFPNVYVAMVTISTMGVVSMSISYCPYALLGHYHDIKEYVHHSPGNSKRGFGIDCAILSCQVYISQILVASALGGVVDTVNTIVVIPIVASVGSFLGFLTATFLVIYPEVSEEAKEEQKGLSSGAAGEGESGAGTEKPTVLKLSRKGGLRGLMETESMV", "length": 793 }, "evidence": [ { "id": "F1RSK5", "url": "https://omabrowser.org/oma/group/F1RSK5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BGZ7-1", "protein_name": "Polyamine-transporter SLC45A4", "gene_name": "SLC45A4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKMAPQNADAESMQVQELPVPLPDLQKPGRAEAETRDETVSEGSIDRIPVRLWVMHGAVMFGREFCYAMETALVTPVLLQIGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGVALFLNGSAIGLALGDVPTRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIIFTVSVALHLSSIEEEQYSPQQERGGDPASAPASGPRACVLDGSVLFPDEVQSEHELALDFLDEGLVRSKSDSVLHVPEAALGLEPELFLQDIEPSIFHDASCPSTPRSTSQEHAPARPPRRPLPLRAPAGEDETLLEEPLSAARLPNGGSAGLRDGPGTCAYSRAALKAPATAGPARRRRHVFRRQASSTFSYYGKIGSHRYRHRRANAVVLIKPSRSMSDLYDLQARPRQHRRRHQSGATTSSGDSESEEGEGETTVRLLWLSMLKMPPELVRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKAPSNSTAWQAYSAGVKMGCWGLVIYAATGATCSALLQKYLDSYDLSIRVVYVLGTLGFSLGTAVMAMFANVYVAMIMISTMGVVSMSISYCPYALLGQYHDIREYVHHSPGTSKRGFGIDCAILSCQVYISQILVASALGSVVDAVGTVRVIPMVASVGSFLGFLTAAFLVIYPEVSEEAKEEQKGLSSQPLGEGASSSAEKPTMLKLSRKEAPQGLVETESMVFGRSVRSRHILLVLQLLESIFLYDYFRKKNFCLYFPKLWFS", "length": 814 }, "evidence": [ { "id": "F1RSK5", "url": "https://omabrowser.org/oma/group/F1RSK5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q0P5V9-1", "protein_name": "Polyamine-transporter SLC45A4", "gene_name": "Slc45a4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAPQNADSESMQVQELPVPLPDPQKPRDPEAETQEETTSEGSIDRIPTRLWVMHGAVMFGREFCYAMETALVTPILLQIGLPEKYYSLTWFLSPVLGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLIGVALFLNGSAIGLALGDVPSRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYVLGGLDWTQTFLGDWFQTQNQVLFFFAAVIFSVSVALHLFSIEEEQYSPQQDRGPEDPTLPGTSVQPGAPAPASRLSSLGGGMQDGSPPFPDEVQSEHELSLDYLDVDIVRSKSDSVLHMADATLDMEPQLLFLHDIEPSIFQDASYPSTPQSTSQELLRAKLPRLSTFLRESTKEDDTLLDNHLNEAKVPNGRGSPPINSLSRSKVDLKPSVTSGSMRRRRHMFHRQASSTFSYYGKIGSHCYRYRRANAVVLIKPSRSMSDLYDLQQRQRSRHRNQSGATASSGDTESEEGETETTVRLLWLSMLKMPKELMWLCLCHLLTWFSVIAEAVFYTDFMGQVIFKGNPQAPSNSTKWHAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSIRIIYMLGTLGFSVGTAVMAMFPNVYVAMVTISTMGVVSMSISYCPYALLGHYHDIKEYVHHSPGNSKRGFGIDCAILSCQVYISQILVASALGGVVDAVNSIVVIPIVASVGSFLGFLTATFLVIYPEVSEEPKEEQKGLSSGPAGEGEGGAGSEKPTVLKLSRKGGLRGLVETESMV", "length": 785 }, "evidence": [ { "id": "F1RSK5", "url": "https://omabrowser.org/oma/group/F1RSK5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5BKX6-1", "protein_name": "Polyamine-transporter SLC45A4", "gene_name": "SLC45A4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKMAPQNADPESMQVQELSVPLPDPQKAGGAEAENCETISEGSIDRIPMRLWVMHGAVMFGREFCYAMETALVTPILLQIGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGVALFLNGSAIGLALGDVPNRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQDMALNIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIIFTVSVALHLFSIDEEQYSPQQERSAEEPGALDGGEPHGVPAFPDEVQSEHELALDYPDVDIMRSKSDSALHVPDTALDLEPELLFLHDIEPSIFHDASYPATPRSTSQELAKTKLPRLATFLKEAAKEDETLLDNHLNEAKVPNGSGSPTKDALGGYTRVDTKPSATSSSMRRRRHAFRRQASSTFSYYGKLGSHCYRYRRANAVVLIKPSRSMSDLYDMQKRQRQHRHRNQSGATTSSGDTESEEGEGETTVRLLWLSMLKMPRELMRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGDPKAPSNSTAWQAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSVRVIYVLGTLGFSVGTAVMAMFPNVYVAMVTISTMGIVSMSISYCPYALLGQYHDIKQYIHHSPGNSKRGFGIDCAILSCQVYISQILVASALGGVVDAVGTVRVIPMVASVGSFLGFLTATFLVIYPNVSEEAKEEQKGLSSPLAGEGRAGGNSEKPTVLKLTRKEGLQGPVETESVV", "length": 768 }, "evidence": [ { "id": "F1RSK5", "url": "https://omabrowser.org/oma/group/F1RSK5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "sensory perception of pain", "id": "GO:0019233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019233", "evidence": [ { "database": "UniProtKB", "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5" } ], "pmid": "" }, { "name": "behavioral response to pain", "id": "GO:0048266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048266", "evidence": [ { "database": "UniProtKB", "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "sucrose:proton symporter activity", "id": "GO:0008506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008506", "evidence": [ { "database": "UniProtKB", "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5" } ], "pmid": "" }, { "name": "polyamine transmembrane transporter activity", "id": "GO:0015203", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015203", "evidence": [ { "database": "UniProtKB", "id": "F1RSK5", "url": "https://www.uniprot.org/uniprotkb/F1RSK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "35039", "name": "", "equation": "spermidine(in) = spermidine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "35039", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/35039" } ] }, { "id": "72135", "name": "", "equation": "putrescine(out) = putrescine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "72135", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/72135" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RSK5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 772, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RSK5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RSK5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 552, "end_pos": 554 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22192:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22192:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15058", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15058", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RSL2", "url": "https://www.uniprot.org/uniprotkb/F1RSL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSL2-1", "url": "https://www.uniprot.org/uniprotkb/F1RSL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLTNYEGLRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLAISGFSSGLGEVAAGPPPHQGVFLPPAPAAANEPVLEEVGIVALAPLADMLSSPQPSPVAAPIVSPLTGPLNVLLPCPGPVSQSSPLTNLLTGPLSSHLASPVAVSPHTGQLPGPALHRPPDSQQPPGGPTAVSLSSPLLTSTAAPPGVSQNLLANPMSNLVLSEPPRVRLAEPLQGCPSGPHPSAAGGPAATSKGNDTRGPRPEPSRKSIPELERKLAHRKSSKFPDGPREAKHLAWERLVGEIAFQLDRRILSGIFPERVRLYGFTVSNIPEKIIQASLNPSDHKLDEELCQTLTQRYVSIMNRLQSLGYNGRVHPALTEQLVNAYGILRERPELAASEGGSYTVDFLQRVLVETVHPSMLTDAMLLLSCLSQLAHDDGKPMFIW", "length": 435, "header": "tr|F1RSL2-1|F1RSL2_PIG Isoform 1 of Spermatosis and centriole associated 1 OS=Sus scrofa OX=9823 GN=SPATC1 PE=1 SV=4 CANONICAL=F1RSL2-1" }, "isoforms": [ { "isoform_ac": "F1RSL2-1", "url": "https://www.uniprot.org/uniprotkb/F1RSL2/entry", "sequence": { "sequence": "MSLLTNYEGLRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLAISGFSSGLGEVAAGPPPHQGVFLPPAPAAANEPVLEEVGIVALAPLADMLSSPQPSPVAAPIVSPLTGPLNVLLPCPGPVSQSSPLTNLLTGPLSSHLASPVAVSPHTGQLPGPALHRPPDSQQPPGGPTAVSLSSPLLTSTAAPPGVSQNLLANPMSNLVLSEPPRVRLAEPLQGCPSGPHPSAAGGPAATSKGNDTRGPRPEPSRKSIPELERKLAHRKSSKFPDGPREAKHLAWERLVGEIAFQLDRRILSGIFPERVRLYGFTVSNIPEKIIQASLNPSDHKLDEELCQTLTQRYVSIMNRLQSLGYNGRVHPALTEQLVNAYGILRERPELAASEGGSYTVDFLQRVLVETVHPSMLTDAMLLLSCLSQLAHDDGKPMFIW", "length": 435, "header": "tr|F1RSL2-1|F1RSL2_PIG Isoform 1 of Spermatosis and centriole associated 1 OS=Sus scrofa OX=9823 GN=SPATC1 PE=1 SV=4 CANONICAL=F1RSL2-1" }, "locus": { "chromosome": "4", "start_pos": 664450, "end_pos": 643762, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006503.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006503.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006332.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006332.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 179, "start_aa": "Thr", "end_pos": 179, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr179", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSL2", "url": "https://www.uniprot.org/uniprotkb/F1RSL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RSL2", "url": "https://www.uniprot.org/uniprotkb/F1RSL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RSL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 435, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RSL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RSL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSL2" }, { "id": "PF15059", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15059" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Speriolin C-terminal", "eco_id": "ECO_0000259", "start_pos": 289, "end_pos": 435, "start_aa": 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] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RSM0", "url": "https://www.uniprot.org/uniprotkb/F1RSM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOL11", "url": "https://www.uniprot.org/uniprotkb/F1RSM0", "locus": { "chromosome": "12", "start_pos": 14058414, "end_pos": 14035689, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000054188", "url": "https://www.ensembl.org/id/ENSSSCG00000054188" } ] } } ], "crossref": [ { "id": "F1RSM0", "url": "https://alphafold.ebi.ac.uk/entry/F1RSM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017274", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017274", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR012584", "url": 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Gene", "id": "ENSSSCG00000005909", "url": "https://www.ensembl.org/id/ENSSSCG00000005909" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005909", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005909", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22119", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22119", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153245", "url": "https://www.ncbi.nlm.nih.gov/gene/100153245", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WHEAASQ", "url": "https://omabrowser.org/oma/group/WHEAASQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BC66", "url": "https://www.orthodb.org/?gene=A0A287BC66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16134:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16134:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BC66", "url": "https://www.uniprot.org/uniprotkb/A0A287BC66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSN5", "url": "https://www.uniprot.org/uniprotkb/F1RSN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSN5-1", "url": "https://www.uniprot.org/uniprotkb/F1RSN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPAGARRTRRAVRFAPPAENWWWDRLAPSGSGYHLLQSDSMLLVIPGPGPARPRGQRRAARRAKRLRPPGSRAAETKAKPGASPAPAPAPAPAPQQVPDPGWGDRIPLEILLQIFGLLVVDGPMPFLGRAARVCRRWHEAASHPVLWHTLTLSPPLAGRRAKSGAKAEKKLLASLQWLMPNRFSQLQRLTLIHWKSQVHSVLKLVSEFCPRLAFLRLSDCHGVTPDTLIMLARACPQLHSLDLQHSMVESTAVVSFLEEAGPRMRKLWLTYGSQTTAILGALLGSCPQLQVLEVSTGINDNHTALQLPVEALQRGCPRLQVLRLLNLMWLPKPSGRAVTPGPGFPSLEELCLASSTCNFVTNEVLDRLLHGSPNLRLLDLRGCLRVTPAGLCELPCQELEELHLGLYGMSDRLTLAKEGSPLLTQKWGHTLRELDLCGQGFSEKDLEQALAAFSGTSVGSHLALCSLNLRGTRVTPSTVSSVISNCPGLRYLNLESCRCLPRGLKRAYRGPEEIRWCLEQLLTSLPAPS", "length": 530, "header": "tr|F1RSN5-1|F1RSN5_PIG Isoform 1 of F-box and leucine rich repeat protein 6 OS=Sus scrofa OX=9823 GN=FBXL6 PE=4 SV=3 CANONICAL=F1RSN5-1" }, "isoforms": [ { "isoform_ac": "A0A287BC66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC66/entry", "sequence": { "sequence": "MAPAGARRTRRAVRFAPPAENWWWDRLAPSGSGYHLLQSDSMLLVIPGPGPARPRGQRRAARRAKRLRPPGSRAAETKAKPGASPAPAPAPAPAPQQVPDPGWGDRIPLEILLQIFGLLVVDGPMPFLGRAARVCRRWHEAASHPVLWHTLTLSPPLAGRRAKSGAKAEKKLLASLQWLMPNRLSDCHGVTPDTLIMLARACPQLHSLDLQHSMVESTAVVSFLEEAGPRMRKLWLTYGSQTTAILGALLGSCPQLQVLEVSTGINDNHTALQLPVEALQRGCPRLQVLRLLNLMWLPKPSGRAVTPGPGFPSLEELCLASSTCNFVTNEVLDRLLHGSPNLRLLDLRGCLRVTPAGLCELPCQELEELHLGLYGMSDRLTLAKEGSPLLTQKWGHTLRELDLCGQGFSEKDLEQALAAFSGTSVGSHLALCSLNLRGTRVTPSTVSSVISNCPGLRYLNLESCRCLPRGLKRAYRGPEEIRWCLEQLLTSLPAPS", "length": 496, "header": "tr|A0A287BC66-1|A0A287BC66_PIG Computationally mapped isoform of F-box and leucine rich repeat protein 6 OS=Sus scrofa OX=9823 GN=FBXL6 PE=4 SV=1 CANONICAL=F1RSN5-1" }, "locus": { "chromosome": "4", "start_pos": 427451, "end_pos": 424532, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038331.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038331.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054110.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054110.1" } ] } }, { "isoform_ac": "F1RSN5-1", "url": "https://www.uniprot.org/uniprotkb/F1RSN5/entry", "sequence": { "sequence": "MAPAGARRTRRAVRFAPPAENWWWDRLAPSGSGYHLLQSDSMLLVIPGPGPARPRGQRRAARRAKRLRPPGSRAAETKAKPGASPAPAPAPAPAPQQVPDPGWGDRIPLEILLQIFGLLVVDGPMPFLGRAARVCRRWHEAASHPVLWHTLTLSPPLAGRRAKSGAKAEKKLLASLQWLMPNRFSQLQRLTLIHWKSQVHSVLKLVSEFCPRLAFLRLSDCHGVTPDTLIMLARACPQLHSLDLQHSMVESTAVVSFLEEAGPRMRKLWLTYGSQTTAILGALLGSCPQLQVLEVSTGINDNHTALQLPVEALQRGCPRLQVLRLLNLMWLPKPSGRAVTPGPGFPSLEELCLASSTCNFVTNEVLDRLLHGSPNLRLLDLRGCLRVTPAGLCELPCQELEELHLGLYGMSDRLTLAKEGSPLLTQKWGHTLRELDLCGQGFSEKDLEQALAAFSGTSVGSHLALCSLNLRGTRVTPSTVSSVISNCPGLRYLNLESCRCLPRGLKRAYRGPEEIRWCLEQLLTSLPAPS", "length": 530, "header": "tr|F1RSN5-1|F1RSN5_PIG Isoform 1 of F-box and leucine rich repeat protein 6 OS=Sus scrofa OX=9823 GN=FBXL6 PE=4 SV=3 CANONICAL=F1RSN5-1" }, "locus": { "chromosome": "4", "start_pos": 427451, "end_pos": 424532, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006489.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006489.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006318.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006318.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 340, "start_aa": "Thr", "end_pos": 340, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr340", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 388, "start_aa": "Thr", "end_pos": 388, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr388", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 476, "start_aa": "Thr", "end_pos": 476, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr476", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSN5", "url": "https://www.uniprot.org/uniprotkb/F1RSN5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1MTY1-1", "protein_name": "F-box/LRR-repeat protein 6", "gene_name": "FBXL6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASGTAGRARRARRRVRVVHPAAARTRSAEDWWWDRLAPSGSGYHLLQSDSMLLVLPGPGPARPRAQRRAARRAQRLRSPGSRAAEAKPRTAPAPTPLQEPDPGWGDRVPLEILLQIFGLLVAADGPIPFLGRAARVCRRWNEAASQPALWHTLTLSPPLAGRPAKSGAKAEKKLLSSLEWLMPNRFSQLQRLTLIHWKSQLHPVLKLVSESCPRLSFLKLSDCHGVTPDALIMLAKACPQLHSLDIQHSMVESTAVVGFLEEAGPRMQKLWLTYNSQTTAILGALLGSCCPQLQVLEVSTGLNHNITPLQLPVEALQKGCPQLQVLRLLNLMWLPKPSGRAMTPGPGFPSLEELCLASSTCNFVSNEVLGRLLHGSPHLRLLDLRGCARITPAGLHDLPCQELEQLHLGLYGMSDRLTLAKEGSPLLTQKWCHSLRELDLSGQGFSEKDLEQALAAFSGTPGGSHLALCSLNLRGTRVTPGTVSSVISSCPGLRYLNLESCRCLPRGLKRAYRGPEEVQWCLEQLLTSLPSPS", "length": 534 }, "evidence": [ { "id": "F1RSN5", "url": "https://omabrowser.org/oma/group/F1RSN5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1R393-1", "protein_name": "F-box/LRR-repeat protein 6", "gene_name": "fbxl6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MESTVAQASSAEMSAAQSSRAETSPTKPAKRKAPLKRKADSLKDDKSKKKKRKPVKRTVRPNYTVQEGEDMLLIISNISSGDSVWKPKRKVGKKKKTNKKAKTKGSTSKKEKAPVKTEVLKVREETDDKHDVMDSAKTDRFDHWGQSLPLEILVKIFQFAVFQDGAVPLLCRVGRVCRLWNGAASSPILWRSVSIGYCWIEPGKSQLPGTEQKIKNTVDWLAENRLFQLREFSLCHWKKNVDYVIQKVSQSCLSLHSLKLSYCTGMTEKAFQNLGADCQSLEDINVQHSEINVDGLVSFLEAYGNQIKKIYFTHSTKSDKLLSALSKGCCPELRLLEINTKLDGGYSQLPICIQGLQIGCPKLQTFRLMNVTAVPKMIRNIPSSTCGFPMLEELCIATSFHSFMTDNDLNNVLHGSPNLRVLDLRGGSRITPTGLYALPCERLECFYWGLYFNSNTMVASKKGIHMLAQKWSNTLRELDLANQPFSEEDLEIAMGHLAHSVGVEFFRSLNLSGTKITSSALRLLINQAPALKYLNLSSCRYLPRGLKRLYHGQEDIQLLLDKLD", "length": 564 }, "evidence": [ { "id": "F1RSN5", "url": "https://omabrowser.org/oma/group/F1RSN5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N531-1", "protein_name": "F-box/LRR-repeat protein 6", "gene_name": "FBXL6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQRRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEILVQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKKLLASLEWLMPNRFSQLQRLTLIHWKSQVHPVLKLVGECCPRLTFLKLSGCHGVTADALVMLAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAILGALLGSCCPQLQVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEELCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGTSDRLTLAKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNLRGTRVTPSTVSSVISGCPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS", "length": 539 }, "evidence": [ { "id": "F1RSN5", "url": "https://omabrowser.org/oma/group/F1RSN5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QXW0-1", "protein_name": "F-box/LRR-repeat protein 6", "gene_name": "Fbxl6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPVASRRVRRRVRSSKRPDARGRSAEDWWWDRLAPRGSGYHLLQADSMLLVLPDLEPPRARAHRRARRRAPRSLARGPTAVAKPRTKPRPEPSLDQGLDSGWGDRIPLEVLVHIFGLLVAAHGPMPFLGRAARVCRHWHEATSHPSLWHTVTLSPSLVGRAGKGNLKGEKKLLACLEWLVPNRFSQLQSLTLIHWKSQVHSVLELVSKFCPRLTFLKLSDCHTVTAETLVMLARACCQLHSLDLHHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAILGALLDNCCPQLQVLQVSTGMNCNNTPLQLPVEALQKGCPQLQVLRLLNLIWLPKPCGRGVPQGPGFPSLEELCLAGSTCNFVSNEVLGRLLHRSPKLRMLDLRGCARVTPSGLCHLPCQELEQLYLGLYGISDGLTLAKDGSPLLTRKWYHTLRELDFSGQGFSEKDLEQALAVFSGTPGGLHPALCSLNLRGTRVTPSTVSSVISGCPGLLYLNLESCRCLPRGLKRVYRGLEEVQWCLEQLLTSPPSAKEPT", "length": 535 }, "evidence": [ { "id": "F1RSN5", "url": "https://omabrowser.org/oma/group/F1RSN5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "F1RSN5", "url": "https://www.uniprot.org/uniprotkb/F1RSN5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "SCF ubiquitin ligase complex binding", "id": "GO:1905761", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905761", "evidence": [ { "database": "UniProtKB", "id": "F1RSN5", "url": "https://www.uniprot.org/uniprotkb/F1RSN5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSN5" }, { "id": "PF12937", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 106, "end_pos": 153, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 340, 388, 476 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 302, "end_pos": 304 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RSN7-1", "uniprot_ac": "F1RSN7", "uniprot_id": "F1RSN7_PIG", "mass": { "chemical_mass": 66460.0, "monoisotopic_mass": 66460.0 }, "refseq": { "ac": "XP_005662869", "name": "uncharacterized aarF domain-containing protein kinase 5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662869" }, "gene_names": [ { "name": "ADCK5", "type": "recommended", "evidence": [ { "id": "F1RSN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSN7" } ] }, { "name": "ADCK5", "type": "synonym", "evidence": [ { "id": "XP_005662869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662869" } ] } ], "protein_names": [ { "name": "AarF domain containing kinase 5", "type": "synonym", "evidence": [ { "id": "F1RSN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSN7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized aarF domain-containing protein kinase 5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005662869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662869" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RSN7", "url": "https://www.uniprot.org/uniprotkb/F1RSN7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADCK5", "url": "https://www.uniprot.org/uniprotkb/F1RSN7", "locus": { "chromosome": "4", "start_pos": 393728, "end_pos": 410559, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005907", "url": "https://www.ensembl.org/id/ENSSSCG00000005907" } ] } } ], "crossref": [ { "id": "F1RSN7", "url": "https://alphafold.ebi.ac.uk/entry/F1RSN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005907", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005907", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13969", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13969", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156475", "url": "https://www.ncbi.nlm.nih.gov/gene/100156475", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156475", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156475", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DVMTTMV", "url": "https://omabrowser.org/oma/group/DVMTTMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RSN7", "url": "https://www.orthodb.org/?gene=F1RSN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43173:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43173:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005662869", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662869", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RSN7", "url": "https://www.uniprot.org/uniprotkb/F1RSN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSN7-1", "url": "https://www.uniprot.org/uniprotkb/F1RSN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRPSQLCHVHSALLQGRLKPWPSPATFFRRHLRVPPAKWSLRPQPLWRKALSVTAVGAPLLLGVRYFTAEPQERRRMRLVVDGVGRFGRSLRVGLQISLDYWWCTHVVLRGVEENSPRYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPPEYIRTLRVLEDRALTRGIQEVDELFLEDFQAPPRELFRDFDYQPIAAASLAQVHRARLHDGTEVAVKVQYIDLRDRFEGDIHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELRHFRYVVVPRVHWDTSSKRVLTADFYEGCKVNDVEAIKTMGLAVRDIAEKLIQAFAEQIFYTGFIHSDPHPGNVLVRRGPDGKAQLVLLDHGLYQFLDAKDRSALCQLWRAIILRDEAAMKTHAAALGVQDYLLFSEVLMQRPVRLGQLWRSNLLSREEAAYMRDMAREHFEEVMAVLKALPRPMLLVLRNVNTVRAINTALGAPVDRYFLMAKSAVRGWSRLAGTGRQDAYGARLLRHVRVVWETFKFEVALRLETLSMQLTALLVRVLVHLGLLPEAQGLYEYLET", "length": 581, "header": "tr|F1RSN7-1|F1RSN7_PIG Isoform 1 of AarF domain containing kinase 5 OS=Sus scrofa OX=9823 GN=ADCK5 PE=3 SV=3 CANONICAL=F1RSN7-1" }, "isoforms": [ { "isoform_ac": "F1RSN7-1", "url": "https://www.uniprot.org/uniprotkb/F1RSN7/entry", "sequence": { "sequence": "MWRPSQLCHVHSALLQGRLKPWPSPATFFRRHLRVPPAKWSLRPQPLWRKALSVTAVGAPLLLGVRYFTAEPQERRRMRLVVDGVGRFGRSLRVGLQISLDYWWCTHVVLRGVEENSPRYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPPEYIRTLRVLEDRALTRGIQEVDELFLEDFQAPPRELFRDFDYQPIAAASLAQVHRARLHDGTEVAVKVQYIDLRDRFEGDIHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELRHFRYVVVPRVHWDTSSKRVLTADFYEGCKVNDVEAIKTMGLAVRDIAEKLIQAFAEQIFYTGFIHSDPHPGNVLVRRGPDGKAQLVLLDHGLYQFLDAKDRSALCQLWRAIILRDEAAMKTHAAALGVQDYLLFSEVLMQRPVRLGQLWRSNLLSREEAAYMRDMAREHFEEVMAVLKALPRPMLLVLRNVNTVRAINTALGAPVDRYFLMAKSAVRGWSRLAGTGRQDAYGARLLRHVRVVWETFKFEVALRLETLSMQLTALLVRVLVHLGLLPEAQGLYEYLET", "length": 581, "header": "tr|F1RSN7-1|F1RSN7_PIG Isoform 1 of AarF domain containing kinase 5 OS=Sus scrofa OX=9823 GN=ADCK5 PE=3 SV=3 CANONICAL=F1RSN7-1" }, "locus": { "chromosome": "4", "start_pos": 410476, "end_pos": 393829, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006487.6", "url": "https://www.ensembl.org/id/ENSSSCT00000006487.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006316.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006316.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSN7", "url": "https://www.uniprot.org/uniprotkb/F1RSN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156475", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156475", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M8N0-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5 isoform X1", "gene_name": "Adck5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWRPMRLCHFHSALLQNRQKPWPCPAIFFRRNFKSPMARTSRTRLLWRRTLSATVVGVPLLLGARYFTAEAQEKRRLRLAVDGIGRFGRSLKVGLLISLDYWWCTNVILRGVEENSPGYVKVMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPPEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTAVAVKVQYIDLRDRFDGDVHTLELLLQLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHYVVVPRVHWDKSSKRVLTADFCEGCKVNDTEAIKRQGLAVQDVAKKLIQTFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDSAAMKTHAAELGVQDYMLFSEVLMQRPVRLGQLWGSHLLSREETVYMQDMAREHFEGIMEVLKALPRPMLLVLRNINTVRAINSTLGTPVDRYFLMAKSAVWGWSRLVGAAYHGIYSSSLLRHIKVIWETFKFEVALRLEILAMRLTALLLRVLARLGFAPKAKDVSQYLEM", "length": 580 }, "evidence": [ { "id": "F1RSN7", "url": "https://omabrowser.org/oma/group/F1RSN7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1Q5S6-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "adck5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAETFRSLRLCRHHMSLLRKCPRLIAPQVFHQKFSSNRVVKGHRLFRKLLLGVSVGVPLVVGVQYVVSEPRERRKMKMLTEGIGRFCRSLYVGLMISADYWWTSNIALRGMDESSPEFLKQMSACHQRAASNMVDGAIQNGGLYIKLGQGLCAFNHLLPPEYIQTLHVLEDKALNRRYKEVDALFQEDFNMTPDKMFRTFDYEPVAAASLAQVHKAELHDGTPVAVKVQYIDLRDRFDGDIRTLEILLDVIKFMHPSFGFRWVLQDLKGTLAQELDFENEGRNSERCAEELKHFKFVVVPKVFWDVTSKRVLTAEYCDGCKINNVEEIQRQGLSLKDTADKLIRIFAEQIFYTGFIHADPHPGNVLVRRGPDKKAELVLLDHGLYEHLSKSDRAALCQLWRAIILRDDAGMKTYANQLGVKEYFLFSEMLLQRPINMWDLGLGNILTGEETSYMRDMAINRFDKIMQVLKSMPRPMLLVFRNINTVRCINITLGAPVDRYFIMAKCAVRGHGRAQAEDIRLFSRLSVFRWVCSFWESLKFEFALRSEMALMSVTRSLLKLLAFCNMVTLDQDVFQYLK", "length": 579 }, "evidence": [ { "id": "F1RSN7", "url": "https://omabrowser.org/oma/group/F1RSN7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3V9I7-1", "protein_name": "AarF domain containing kinase 5", "gene_name": "Adck5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPQATSRGRCGVAEVVTSRLGGVALPLYPGLCGECGPVRKRIAYSFAGSAEQWGRLRRNREESTAGDMWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPLARTSRTRLLWRRTFSATVVGTPFLFGAHYFMAESSERRKLRLAVDGIGRFGRSVKIGFFISLDYWWCTNVVLRGVEENSPKYVEIMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPTEYIQTLRVLEDKALTRGFREVDELFLEDFQALPSELFQEFDYEPMAAASLAQVHRAKLQDGTAVAVKVQYIDLRDRFDGDVHTLELLLRLVELMHPSFGFSWVLQDLKGTLAQELDFENEGRNSERCAQELKHFHHVVIPRVYWDKSSKRVLTADFCDGCKVNDMEGIKSQGLAVQDVATKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDDAAMKTHAAALGVQDYMLFSEVLMQRPVRLGQLWGSHLISREEAAYMQDMAREHFDGIMEVLKSLPRPMLLVLRNINTVRAINSSLGTPVDRYFLMAKSAVWGWSRLVGAAYQGIYSSRLLRHIKVIWEALKFEVILRLEILAMRFTALMLRVMVRLGFAPKAEAEEVYQYLEM", "length": 649 }, "evidence": [ { "id": "F1RSN7", "url": "https://omabrowser.org/oma/group/F1RSN7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3MIX3-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "ADCK5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWRPVQLCHFHSALLHSRQKPWPSPAVFFRRNVRGLPPRFSSPTPLWRKVLSTAVVGAPLLLGARYVMAEAREKRRMRLVVDGMGRFGRSLKVGLQISLDYWWCTNVVLRGVEENSPGYLEVMSACHQRAADALVAGAISNGGLYVKLGQGLCSFNHLLPPEYTRTLRVLEDRALKRGFQEVDELFLEDFQALPHELFQEFDYQPIAAASLAQVHRAKLHDGTSVAVKVQYIDLRDRFDGDIHTLELLLRLVEVMHPSFGFSWVLQDLKGTLAQELDFENEGRNAERCARELAHFPYVVVPRVHWDKSSKRVLTADFCAGCKVNDVEAIRSQGLAVHDIAEKLIKAFAEQIFYTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLEEKDRAALCQLWRAIILRDDAAMRAHAAALGVQDYLLFAEMLMQRPVRLGQLWGSHLLSREEAAYMVDMARERFEAVMAVLRELPRPMLLVLRNINTVRAINVALGAPVDRYFLMAKRAVRGWSRLAGATYRGVYGTSLLRHAKVVWEMLKFEVALRLETLAMRLTALLARALVHLSLVPPAEELYQYLET", "length": 580 }, "evidence": [ { "id": "F1RSN7", "url": "https://omabrowser.org/oma/group/F1RSN7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80V03-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "Adck5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRPMRLCHFHSTLLQSRQKPWPCPAIFFRRNFKSPPARTSRARLLWRRALSATVVGTPFLLGAYYFMAEASERRKLRLAVDGIGRFGRSVKIGLFISTDYWWCTNVVLRGVEENSPKYVEIMSACHQRAADALVAGAIRNGGLYVKLGQGLCSFNHLLPTEYIQTLRVLEDKALTRGFREVDELFLEDFQALPNELFQEFDYEPMAAASLAQVHRAKLHDGTDVAVKVQYIDLRDRFDGDVQTLELLLRLVELMHPSFGFSWVLQDLKGTLVQELDFENEGRNAERCAQELKHFHYVVIPRVHWDRSSKRVLTADFCNGCKVNDMEGIKSQGLAVQDVAKKLIQTFAEQIFHTGFIHSDPHPGNVLVRKGPDGKAELVLLDHGLYQFLDEKDRSSLCQLWRAIILRDNAAMKKHAAALGVQDYMLFSEVLMQRPVRLGQLWGSHLISREEAAYMQDMAREHFDGIMEVLKALPRPMLLVLRNINTVRAINSNLGTPVDRYFLMAKSAVWGWSRLVGAAYQGIYGSSLLRHIKVLWEALKFEMALRLEILAMRLTALMLRVLVRLGFAPKAEAEEVYQYLEM", "length": 582 }, "evidence": [ { "id": "F1RSN7", "url": "https://omabrowser.org/oma/group/F1RSN7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VTG5-1", "protein_name": "AarF domain containing kinase 5, isoform A", "gene_name": "Adck5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRPLQRVRQLLSLGTRIRGKRALNGLREANVQKGGRPVLRFSLLAAGAGGLAYDGIVNDFTYCGASVRFVRSLKTAGLIAADYLRLDENDPEYETKVKLLHKKSAERLLETCLLNGGLYIKVGQGFAAINDILPVEYTSTLSLLQDRCLPTTQADVQKVFRKDFGQLPEEIYQEFDYQPVAAASLAQVFKARLPSGEQVAVKVQYNDLQKRFISDLGTIIFLQDIVEFFFKDYNFGWILNDLRKNLVLELNFLQEGQNAERCAKDMEKFSYVHVPKVHWSYTKTRVLTLEWMDGCKISDLKTIEKEKLSLKDIDVKLFEAFAEQIFYTGFVHADPHPGNIFVRKNRKNGRADIILLDHGLYEELPQNVRGPLCEFWEATVLRQENRMQAAAEKIGIGDYMRFAEVLFQQPIRNRGGGIRGKLTQEDIDHMQEIARNNFEHIMGTLKEMPRSMLFVVRNLNTVRAISHQHGDVVNRPRVMARYAQKCLYMQHNRRSPVQYIRWLSGRIYFEYCLFLSAFKLYLLDWYFNILYLVGRAPASARTVMKDIMQPPEPNVLK", "length": 557 }, "evidence": [ { "id": "F1RSN7", "url": "https://omabrowser.org/oma/group/F1RSN7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RSN7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 581, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RSN7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RSN7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSN7" }, { "id": "PF03109", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC1 atypical kinase-like", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 415, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"F1RSP6-1", "url": "https://www.uniprot.org/uniprotkb/F1RSP6/entry", "sequence": { "sequence": "MHGKLLVLASLYLVQGLPYGLQSGLLPVLLRARGLSLTHVGLAKVLYAPWLFKLVWAPLVDARGSPRAWLTLSTAALGLLCGLLAALPPAEAGQSGLPLTVAGLLLLLNLAAAVQDVALDTLAMQLLEPAELGPGNTVQVVAYKLGAVLAGGGLLTLLPTLSWPLLFLLLAATYWLAAALAWAAPALQQLPAPQPSEPRRHTLHLQQHLLAVPGTLWMAGFVLSYKLGEQGTSSLFPLLLLDCGVSTPELGLWNGVGAVVCSIVGSSLGGALLARHRQPLPLLRSLLRFRLGGLACQTVLVFHLDAPGARVGPGTVLRGAALLSLCLQHFLGGLVTTTTFTLMMRCSQLAPSALQATHYSLLATLELLGKLLVGALAGALADSLGLRFCFFLFLALSATPMLCLGLAPSTLA", "length": 412, "header": "tr|F1RSP6-1|F1RSP6_PIG Isoform 1 of Solute carrier family 33 member 2 OS=Sus scrofa OX=9823 GN=MFSD3 PE=3 SV=2 CANONICAL=F1RSP6-1" }, "locus": { "chromosome": "4", "start_pos": 295541, "end_pos": 293751, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006478.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006478.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006307.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006307.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSP6", "url": "https://www.uniprot.org/uniprotkb/F1RSP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F6PUB3-1", "protein_name": "Solute carrier family 33 member 2", "gene_name": "MFSD3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAMLGKLLPLAGLYLVQGLPYGLQSGLLPVLLRARGLSLTRVGLAKALYAPWLFKLVWAPLVDKWGSSRGWLALSTAALGLLCGLLATLPPAGPGGAALPVPVAALLLLLNLAAAVQDVALDMLAVRLLEPAELGPGNTVQVVAYKLGAALASGGLLALLPALSWTLLFLLLAATYWLAAAAAWVAPALRQLPVPPPSAHPRPSLRLQQDLLAVPGTLWTAGFVLTYKLGEQGASGLFPLLLLDGGISTAELGLWNGVGAVLCSIAGSSLGGVLLARCWQPLPLLRSVLWFRLGGLAYQTALLFQLNSPRTNPVPGTVLRGATLLSLCLQHLLGGLVTTTTFTMMMRCSQLAPSALQATHYSLLATLELLGKLLVGTLAGALADSLGPRLCFSLFLALSATPMLYLGFAPSALA", "length": 414 }, "evidence": [ { "id": "F1RSP6", "url": "https://omabrowser.org/oma/group/F1RSP6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4V8E5-1", "protein_name": "Solute carrier family 33 member 2", "gene_name": "Slc33a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHGKLLPLAGLYLVQGLPYGLQSSLLPILLRARGLSLTRVGLTKGLYAPWLLKLAWAPLVDRRGTPRVWLTFSTVCLGLVCGLLAVLPPPQAGQTGLPTTVMGLLLLLNLGAAVQDVALDTLAVQLLEPKELGPGNTVQVVAYKLGSALAGGGLLVFFPTLSWPLLFLLLTATYWLAAALAWAAPALGRLSRPQVSEHTPHTSYLLQDLLAVPGTLWTAGFVLTYKMGEQGAGSLFPLLLLDHGASASDLGLWSGLGAATCSIAGSSLGGALLARHCSHPRQPLKLLRSVLQLRLGGLACQTALLLHLNTPGASLDPGTVMRGAALLSLCLQQFLGGVVTTATFTVMMHCSQLAPRALQATHYSFLATLELLGKLLPGTLAGVLADGLGPRLCFAAFLVLSALPVLDLRLAPSNLT", "length": 416 }, "evidence": [ { "id": "F1RSP6", "url": "https://omabrowser.org/oma/group/F1RSP6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5U419-1", "protein_name": "Solute carrier family 33 member 2", "gene_name": "Slc33a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MRGKLLPLAGLYLVQGLPYGLQSGLLPVLLRAGGLSLTRVGLAKVLYAPWLLKLAWAPLVDAQGSARAWVTRSTAGLGLVCGLLAGLPPPGAGQAGLPAAVAGLLLLLNLGAAMQDVALDALAVQLLEPAELGPGNTVQVVAYKLGAALAGGALLALLPTFSWPQLFLLLAATYWLAAALAWAAPALRRLPQQPPSEQRPHTAHLLRDVLAVPGTVWTAGFVLTYKLGEQGASSLFPLLLLDHGVSAPELGLWNGVGAVVCSIAGSSLGGTLLAKHWKLLPLLRSVLRFRLGGLACQTALVFHLDTLGASMDAGTILRGSALLSLCLQHFLGGLVTTVTFTGMMRCSQLAPRALQATHYSLLATLELLGKLLLGTLAGGLADGLGPHPCFLLLLILSAFPVLYLDLAPSTFL", "length": 412 }, "evidence": [ { "id": "F1RSP6", "url": "https://omabrowser.org/oma/group/F1RSP6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RSP6", "url": "https://www.uniprot.org/uniprotkb/F1RSP6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1RSP6", "url": "https://www.uniprot.org/uniprotkb/F1RSP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RSP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 412, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RSP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RSP6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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"GQAAGPWGQGAQAGGGLPQASRVSVYDNVPSSHLDATSLSESEAAGVRERRDSGVGASLTRPSRLATPVEQLPALAPTPAIHGVAPRQQPDAGQLNLLQRLSLLRLTAIMEKHSLSNKHGWTWAVPKFMKRMKVPDYKDKTVFGVPLIVHVQRTGQPLPQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQMNESFPENVSYEDQSAYDVADMVKQFFRDLPEPLLSSKLSETFLHIYQYVPKEQQLQAAQAAVLLLADENREVLQTLLCFLKDVVDLVEENQMTPMNLAVCLAPSLFHLNLLKKESSPRVIQKKYATGKPDQKDLSENLAAAQGLAHMIVECNRLFEVPLEMVAQSHNSYAEAEIHPPTLEDLGTQLEESGATFRTYLEHLVQGLQREAKEKFKGWVTCSSADNTDLAFKKVISGHPLRLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDKQTEVYQYVLNSMAPHPSRDFVVLRTWRTDLPKGMCTLVSLSVEHEEAPLLGGVRAVVMDSQYLIEPCGSGKSRLTHVCRVDLRGHSPEWYNKGFGHLCAAEVARIRNSFQPLIAEGPETKI", "length": 595, "header": "tr|F1RSR5-1|F1RSR5_PIG Isoform 1 of StAR related lipid transfer domain containing 13 OS=Sus scrofa OX=9823 GN=STARD13 PE=4 SV=5 CANONICAL=F1RSR5-1" }, "isoforms": [ { "isoform_ac": "F1RSR5-1", "url": "https://www.uniprot.org/uniprotkb/F1RSR5/entry", "sequence": { "sequence": "GQAAGPWGQGAQAGGGLPQASRVSVYDNVPSSHLDATSLSESEAAGVRERRDSGVGASLTRPSRLATPVEQLPALAPTPAIHGVAPRQQPDAGQLNLLQRLSLLRLTAIMEKHSLSNKHGWTWAVPKFMKRMKVPDYKDKTVFGVPLIVHVQRTGQPLPQSIQQALRYLRSNCLDQVGLFRKSGVKSRIHALRQMNESFPENVSYEDQSAYDVADMVKQFFRDLPEPLLSSKLSETFLHIYQYVPKEQQLQAAQAAVLLLADENREVLQTLLCFLKDVVDLVEENQMTPMNLAVCLAPSLFHLNLLKKESSPRVIQKKYATGKPDQKDLSENLAAAQGLAHMIVECNRLFEVPLEMVAQSHNSYAEAEIHPPTLEDLGTQLEESGATFRTYLEHLVQGLQREAKEKFKGWVTCSSADNTDLAFKKVISGHPLRLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDKQTEVYQYVLNSMAPHPSRDFVVLRTWRTDLPKGMCTLVSLSVEHEEAPLLGGVRAVVMDSQYLIEPCGSGKSRLTHVCRVDLRGHSPEWYNKGFGHLCAAEVARIRNSFQPLIAEGPETKI", "length": 595, "header": "tr|F1RSR5-1|F1RSR5_PIG Isoform 1 of StAR related lipid transfer domain containing 13 OS=Sus scrofa OX=9823 GN=STARD13 PE=4 SV=5 CANONICAL=F1RSR5-1" }, "locus": { "chromosome": "11", "start_pos": 9543331, "end_pos": 9520439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010245.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010245.5" 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"https://omabrowser.org/oma/group/QWVSCEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RSX6", "url": "https://www.orthodb.org/?gene=F1RSX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15819", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15819", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15819:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15819:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1RSX6", "url": "https://www.uniprot.org/uniprotkb/F1RSX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSX6-1", "url": "https://www.uniprot.org/uniprotkb/F1RSX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSX6", "url": "https://www.uniprot.org/uniprotkb/F1RSX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518049", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518049", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PZ05-1", "protein_name": "NALCN channel auxiliary factor 2", "gene_name": "FAM155B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIRGAWMYPRGGAGGGAVCCAPRRSDKPVADPERAQKWRLSLASLLFFTVLLSDHLWLCAGAKLRARERSGAGRPRGRTPRALQEPPAGSCEAFLGNLSRAPGPAPCPAARADLDSACARLHSLQRLLGSFAGVPLRSPPATALFSSPSSKRNFLQAYFRNFNLSFCDTYTIWDLLREMGGPDSLDCSVENLMVDLVAAAAGALGGEACSSCVQAYQRLDQHAQEKYEEFDLLLEKYLQSDEYSVRSCIRDCKAVYKAWLCSEYFNVTQQQCRHRIPCKQYCLEVQTRCPFVLPDNDELIYGGLPGFICTGLLESQLPEEEAKCCEVQWDSCDHPPDSSSDTSPKSTASESLHYHHHDPHLHHQRQNHYHLYHHHQYHHSPSLLPVSAGSRLGSSRIRLCVLVLMLLHTMVSFSSVHSGGGGLGPEALPSLDESVARDE", "length": 439 }, "evidence": [ { "id": "F1RSX6", "url": "https://omabrowser.org/oma/group/F1RSX6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2AWH2-1", "protein_name": "NALCN 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"Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020946666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020946666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AYS9", "url": "https://www.uniprot.org/uniprotkb/A0A287AYS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RSY1-1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEISSEPSGQLIVHSDTHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGCLQASEKSTEQILATAQFLKVYDLVKAYADFQNNHSSPKPATLNTAGAPVVVISNKKNEPPKRKRGRPRKVNSLQEGKSELAAEEELQLRVNNSVQNRAHFMVKELDSGVLSEQIPAKELEESEPACEPGRGEEMPAEKDENCDPKSQDGQDSQSRCSKRRIRRSVKLKDYKLVGDEDDQGSARRVCGRRKRPGGPEARCKDCGKVFKYNHFLAIHQRSHTGERPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCGKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCAVCGKSFSDSSAKRRHCILHTGKKPFSCPECNLQFARLDNLKAHLKIHSKEKHVSDASSVSGNSNTEEVRNVLQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGISIVTAESSQNMTADQAANLTLLAQQPEQLQNLILSAQQEQTEHMQSLNMIESQMEPSQTEPVHVITLSKETLEHLHAHQEQTGQLHLAGASDPAQHLQLTQEPPAHHVPQPTPLSQEQS", "length": 693, "header": "tr|F1RSY1-1|F1RSY1_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 24 OS=Sus scrofa OX=9823 GN=ZBTB24 PE=3 SV=1 CANONICAL=F1RSY1-1" }, "isoforms": [ { "isoform_ac": "A0A287AYS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYS9/entry", "sequence": { "sequence": "MAEISSEPSGQLIVHSDTHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGCLQASEKSTEQILATAQFLKVYDLVKAYADFQNNHSSPKPATLNTAGAPVVVISNKKNEPPKRKRGRPRKVNSLQEGKSELAAEEELQLRVNNSVQNRAHFMVKELDSGVLSEQIPAKELEESEPACEPGRGEEMPAEKDENCDPKSQDGQDSQSRCSKRRIRRSVKLKDYKLVGDEDDQGSARRVCGRRKRPGGPEARCKDCGKVFKYNHFLAIHQRSHTGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCAVCGKSFSDSSAKRRHCILHTGKKPFSCPECNLQFARLDNLKAHLKIHSKEKHVSDASSVSGNSNTEEVRNVLQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGISIVTAESSQNMTADQAANLTLLAQQPEQLQNLILSAQQEQTEHMQSLNMIESQMEPSQTEPVHVITLSKETLEHLHAHQEQTGQLHLAGASDPAQHLQLTQEPPAHHVPQPTPLSQEQS", "length": 637, "header": "tr|A0A287AYS9-1|A0A287AYS9_PIG Computationally mapped isoform of Zinc finger and BTB domain containing 24 OS=Sus scrofa OX=9823 GN=ZBTB24 PE=3 SV=1 CANONICAL=F1RSY1-1" }, "locus": { "chromosome": "1", "start_pos": 75547808, "end_pos": 75532392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053925.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053925.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049108.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049108.1" } ] } }, { "isoform_ac": "F1RSY1-1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1/entry", "sequence": { "sequence": "MAEISSEPSGQLIVHSDTHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGCLQASEKSTEQILATAQFLKVYDLVKAYADFQNNHSSPKPATLNTAGAPVVVISNKKNEPPKRKRGRPRKVNSLQEGKSELAAEEELQLRVNNSVQNRAHFMVKELDSGVLSEQIPAKELEESEPACEPGRGEEMPAEKDENCDPKSQDGQDSQSRCSKRRIRRSVKLKDYKLVGDEDDQGSARRVCGRRKRPGGPEARCKDCGKVFKYNHFLAIHQRSHTGERPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCGKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCAVCGKSFSDSSAKRRHCILHTGKKPFSCPECNLQFARLDNLKAHLKIHSKEKHVSDASSVSGNSNTEEVRNVLQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGISIVTAESSQNMTADQAANLTLLAQQPEQLQNLILSAQQEQTEHMQSLNMIESQMEPSQTEPVHVITLSKETLEHLHAHQEQTGQLHLAGASDPAQHLQLTQEPPAHHVPQPTPLSQEQS", "length": 693, "header": "tr|F1RSY1-1|F1RSY1_PIG Isoform 1 of Zinc finger and BTB domain-containing protein 24 OS=Sus scrofa OX=9823 GN=ZBTB24 PE=3 SV=1 CANONICAL=F1RSY1-1" }, "locus": { "chromosome": "1", "start_pos": 75547808, "end_pos": 75532392, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004874.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004874.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004759.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004759.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 686, "start_aa": "Thr", "end_pos": 686, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr686", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YGF9-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "ZBTB24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEMSPDPSEKLVVIHSKTHKHTILASFEEQRKKDFLCDITLIVENVQFRAHKALLAASSEYFSMMFVDEGEIGQSIYVLEGMVADAFGALLEFIYTGYVHATEKSSEQILATAQLLKVNDLLRAYNEYQAGRSPGDTLPITTNGSTSVALTAGDKKSEELPKRKRGRPRKIHIVQEEKPGANFAEDVQLRENNSMQNKQNSMKKDTAADGIVISEQDLARKDAEETEPAGGSEAATALSAEKDENCDPRSEGMQSAQSRYSKRRLRRSIRLKDYKLLGEEDEKGLAKRTDGKRKRAGSEARCKDCGKVFKYNHFLAIHQRSHTGERPYKCSECGKGFSQKHSLQVHERMHTGERPYTCTVCNKALTTKHSLLEHMSLHTGQKAFTCDQCGKYFSQKRQLKSHYRVHTGRSLPECNQCHRKFMDAAQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCGICGKSFSDSSAKRRHCILHTGKKPFSCPECSLQFARLDNLKSHLKIHSKEKQFQEASTAPSTNTNSEEVRNILQLQQYQLATSGGQEIQLLVADAVHNINFMPSHNQGISIVTAESAPNMATGQAANLTLLAQPPQQLQNLLLSAQQEQVEQIQNINVMANQIETAQPEQMHVITLSKEALEHLHAHQGQNEEIHLAGSSHPD", "length": 675 }, "evidence": [ { "id": "F1RSY1", "url": "https://omabrowser.org/oma/group/F1RSY1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FHV6-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "Zbtb24", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAETTPETSGQLVVHADTHSDTVLASLEDQRKRGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKTTEQILATAQFLKVYDLIKAYTDFQTNHSSSKPTALNGTGTPVVVISNKKNDPLKRKRGRPRKGNSIQEGKSELAAEEEMQLRVNNSVQNRQNFVDKEGDGVELSEQMPKEKESEPTGEPGRVEEMLAEKDENCDPKALDGQDSLSRYSKRRIRRSVKLKDYKLLGDEDDQCSVKRTCGRKKRASGPEAQCKDCGKVFKYNHFLAIHQRRHTGERPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCSICGKSFSDSSAKRRHCILHTGKKPFSCPECSLQFARLDNLKAHLKIHSKEKHTSDSSSVSGSNADEVRSILQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPNEGVSIVAAESSQNMATDPAANLALLTQQPEQLQSLILSAQPEQTEHIQSLSMIGSQMEPSQAEPVQLITLSKETLALAHLHAHQGQTEALRLAADASDPAQHLQLTQEPDPPLPTPLGQEQS", "length": 690 }, "evidence": [ { "id": "F1RSY1", "url": "https://omabrowser.org/oma/group/F1RSY1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O43167-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "ZBTB24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAETSPEPSGQLVVHSDAHSDTVLASFEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKSTEQILATAQFLKVYDLVKAYTDFQNNHSSPKPTTLNTAGAPVVVISNKKNDPPKRKRGRPKKVNTLQEEKSELAAEEEIQLRVNNSVQNRQNFVVKGDSGVLNEQIAAKEKEESEPTCEPSREEEMPVEKDENYDPKTEDGQASQSRYSKRRIWRSVKLKDYKLVGDQEDHGSAKRICGRRKRPGGPEARCKDCGKVFKYNHFLAIHQRSHTGERPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQNRQLKSHYRVHTGHSLPECKDCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCGICGKSFSDSSAKRRHCILHTGKKPFSCPECNLQFARLDNLKAHLKIHSKEKHASDASSISGSSNTEEVRNILQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGISIVTAESSQNMTADQAANLTLLTQQPEQLQNLILSAQQEQTEHIQSLNMIESQMGPSQTEPVHVITLSKETLEHLHAHQEQTEELHLATSTSDPAQHLQLTQEPGPPPPTHHVPQPTPLGQEQS", "length": 697 }, "evidence": [ { "id": "F1RSY1", "url": "https://omabrowser.org/oma/group/F1RSY1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q3B725-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "Zbtb24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADTTPEPSGHLIVHSDTHSDTVLASLEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKMTEQILATAQFLKVYDLVKAYTDFQNSHNSPKPPALNCSGTPVVVISNKKNDPLKRKRGRPRKTNSLQEGKSELAAEGEVQLRVNNSVQNRQNFVFKEDSVRLNEQTPKEKELEPAGEPGSVEEMPAEKDENSDPKARDGPGSQSRYSKRRTRRSVKLKDYKLSGDEDDQSTAKRATCGRQKRSSAPEARCKDCDRVFKYSHFLAIHQRRHTGERPFKCSECGKGFAQKHSLQVHTRMHTGERPYTCTVCSKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCSICGKCFSDSSAKRRHCVLHTGKKPFSCPECSLQFARLDNLKAHLKIHSKEKHASDSSSVSGSSADEVRNVLQLQPYQLSASGEQEIQLLVTDSVHNINFMPTPSQGVSIVAAESSQNMATDPAANITLLTQQPEQLQGLILSAQQEQTEHIQSLGMIGSQMDTSQTEPVHVITLSKETLEHLHAHQEQTSSSVPAADTGARASSPPSTRPGAELTQAPLTVPLDPSPGATVGGVALWAVLL", "length": 705 }, "evidence": [ { "id": "F1RSY1", "url": "https://omabrowser.org/oma/group/F1RSY1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q52KB5-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "zbtb24", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSALPPSSSSPAVLALHSATHKDTILHKFDTLRRSELLCDITLIVEDVHFKAHKALLAASSEYFSALFTAEEQVSQSLYKLDGMTANTFSSVLEFMYSAVVLVDESSSEQLMEMARFLVIPDLIKAHEDLQAVDEHMQVKRKRGRPKKNQDLSQKENPESELQAQTSSEIQEVNEEPASPATDGSDGEFNPREERRREGKRKIKQPIRLKGFRMDDLMEGKEPGKRGRRRKYPDTEARCEECGKVFKSHLFLKIHQRTHTGEKPFRCSVCGKEFTQKHTLLVHQRMHTGEKPYICTVCSKALSTKHSLLEHMNLHTENKLFTCEECGKSFSQQRQLKSHNRVHTGKGLPECAECHHKFMDAAQLKKHLRTHTGEKPFTCEICGKCFTAKSTLQTHIRIHRGEKPYVCKVCDKTFSDPSARRRHEVSHTGKKTFSCSICKVSFARKDNLKAHIKTHNKENPPAQAESTDKPPQSAPEQQEQEQQQQQQTSGDKELHSILQLQPFQLPAHGEQEIQLLVTGENLSLDQEQSISIITSEDTEQSLALLTQPSGHVQNLAVVTPDGNAQIQTISVLGGEVNGGDPEQMHVITLSKEAMEQLQVHHGAPQQLQVIHQLSEEQTGPVAGIHISGQSGQAISISQTTEQIPSDQIQGQTFQIQAGTVSYLYTTSMNPQN", "length": 672 }, "evidence": [ { "id": "F1RSY1", "url": "https://omabrowser.org/oma/group/F1RSY1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80X44-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "Zbtb24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTTPEPCGQLMVHSDTHSDTVLASLEDQRKKGFLCDITLIVENVHFRAHKALLAASSEYFSMMFAEEGEIGQSIYMLEGMVADTFGILLEFIYTGYLHASEKTTEQILATAQFLKVYDLVKAYADFQDNHSAPKPPALNCTGTPVVVISNKKNDPLKRKRGRPRKANGLQEGRSELAAEGELQLRVNNSVQNRQNFVFKEEDSVKLSEQTPEDKESEPAGEPGSVEEVPAEKDENFDPKAGDGQESQSRCSRRRIRRSVKLKDYKLLGDEDDQSTAKRLCGRKKRSSGPEARCKDCDRVFKYSHFLAIHQRRHTGERPFKCNECGKGFAQKHSLQVHTRMHTGERPYTCTVCGKALTTKHSLLEHMSLHSGQKSFTCDQCGKYFSQKRQLKSHYRVHTGHSLPECSHCHRKFMDVSQLKKHLRTHTGEKPFTCEICGKSFTAKSSLQTHIRIHRGEKPYSCSICGKCFSDSSAKRRHCILHTGKKPFSCPECGLQFARLDNLKAHLKIHSKEKHTADSSSVSGSNVDEGRNILQLQPYQLSTSGEQEIQLLVTDSVHNINFMPGPSQGVSIVAAESPQSMATDPAANITLLTQQPEQLQGLILSAQQEQAEHIQSLSVIGGQMESSQTEPVHVITLSKETLEHLHAHQEQTTSSVPAADTGARATPVPSTRPGAELTQAPLAVPLDPSPGATVAGWPFGPSSYRSLKM", "length": 710 }, "evidence": [ { "id": "F1RSY1", "url": "https://omabrowser.org/oma/group/F1RSY1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RSY1", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 592, "end_pos": 594, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RSY1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 693, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RSY1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RSY1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RSY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RSY1" }, { "id": "PS50097", "database": "PROSITE", 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"https://www.ncbi.nlm.nih.gov/protein/XP_001925841", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RT69", "url": "https://www.uniprot.org/uniprotkb/F1RT69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RT69-1", "url": "https://www.uniprot.org/uniprotkb/F1RT69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPTESLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKVLGGGAKPEGGAPRETLKLEILKNILNSSEGSSAGSAHKHGARNWPAARADAAELHRHSFAESLRLCPTPGRGSPQEGGSHVGRRLLEPAADAVLHVSHSSSDIRRVGGKPPRAVACSSSAPPLPPKPKAAAAAPAALKSPEAEAAEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 371, "header": "tr|F1RT69-1|F1RT69_PIG Isoform 1 of Protein FAM110B OS=Sus scrofa OX=9823 GN=FAM110B PE=3 SV=1 CANONICAL=F1RT69-1" }, "isoforms": [ { "isoform_ac": "F1RT69-1", "url": 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"type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 168, "start_aa": "Thr", "end_pos": 168, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr168", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RT69", "url": "https://www.uniprot.org/uniprotkb/F1RT69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156516", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156516", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NWR5-1", "protein_name": "Protein FAM110B", "gene_name": "FAM110B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPTETLPTGSMVKPVSPAVTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKVFSNNAKTESGVQRENLKLEILKNIINSSEGSSSGSGHKHGPRNWPPHRADSTELNRHSFAESLKVYPTQGRSSPQESSSNVSRRLLDQSAETFLHVSHSSSDIRKVTSAKPLKAIPCSSSAPPLPPKPKIAAIATLKSPEIEAVESGCGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 370 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HD62-1", "protein_name": "Protein FAM110B", "gene_name": "Fam110b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPGAKRTLGSPTLKVFGNHAKTESGVQRETLKLEILKNIINSSEGSSSGSGHKHSSRNWPPHRDTTDLHRHSFAESLKVYPTPGRGSPQESSSHVSRRLLEQSAESFLHVSHSSSDIRKVTSVKPLKAIPCSSSAPPLPPKPKVAAMKSPEADQVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 366 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2KJ38-1", "protein_name": "Protein FAM110B", "gene_name": "FAM110B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPTESLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKGFGGGGGGAKSEGGAPRETLKLEILKNILNSSEGSSTGSGHKHSARNWPAPRADAAELHRHSFAESLRARPAPGRGSPQEGGSHVGRRPPEPTSSAAAAADAFLHVSHSSSDIRQGPGARPLKAILPCSSSAPPLPPKPKVAAPAAVKSPEAEAAEPAGGVGRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 380 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4QRD7-1", "protein_name": "Protein FAM110B", "gene_name": "fam110b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTETLQADSKPVGQGGAFASAVPLRILNKGPDYFRRQTEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPIKPQVLAKPPVCPVPLKRGGGVGSGLKASNNNAKSDTCATTTKRENLNLEILKNILNSSSSSEGPAKGTSHKVGARSWAPHRSSELSEPGCRSFTDSLKVPPSTQGRHSPQGGNLNLSRRLLEERSCEVDGERSPLHASHSSSDIRRMCNGKPLRAARSSSSSAPPLPPKPSAKALAACDNAPCSPERETLTSTAAELELGSSVARRPSLHRSKSDLSDRYARAGADVERFFNYCGLDPEELESVGVESFARANSDIVSLNFRSASMISSDCEQSRHSNDDLTDEEDDAGERVPYGISAVERNARIIKWLYSIKQARESQKVSHV", "length": 397 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5BJX5-1", "protein_name": "Protein FAM110B", "gene_name": "Fam110b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPGAKRVLGSPTLKVFGNHAKTESGVQRETLKLEILKNIINSSEGSSSGSGHKHSSRNWPPHRDTTELHRHSFAESLKVYPTPGRGSPQESSSHVSRRLLEQSAESFLHVSHSSSDIRKVTSVKPLKAIPCSSSAPPLPPKPKVAAMKSPDADQVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 366 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C739-1", "protein_name": "Protein FAM110B", "gene_name": "Fam110b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPGTKRALGSPTLKVFGNHAKTESGVQRETLKLEILKNIINSSEGSSSGSGHKHSSRNWPPHRDTTDLHRHSFAESLKVYPTPGHGSPQESSSHVSRRLLEQSAETFLHVSHSSSDIRKVTSVKPLKAIPCSSSAPPLPPKPKVAAMKSPEADQVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 366 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TC76-1", "protein_name": "Protein FAM110B", "gene_name": "FAM110B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPTETLQTGSMVKPVSPAGTFTSAVPLRILNKGPDYFRRQAEPNPKRLSAVERLEADKAKYVKSQEVINAKQEPVKPAVLAKPPVCPAAKRALGSPTLKVFGNHAKTESGVQRENLKLEILKNIINSSEGSSSGSGHKHSSRNWPPHRSEATDLHRHSFAESLKVYPTQGRRSPQEGGSHVGRRLLEQSAESFLHVSHSSSDIRKVTSVKPLKAIPCSSSAPPLPPKPKIAAIASMKSPEADPVEPACGVSRRPSLQRSKSDLSDRYFRVDADVERFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLRNDDSANDRVPYGISAIERNARIIKWLYSIKQARESQKVSHV", "length": 370 }, "evidence": [ { "id": "F1RT69", "url": "https://omabrowser.org/oma/group/F1RT69/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RT69", "url": "https://www.uniprot.org/uniprotkb/F1RT69" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RT69", "url": "https://www.uniprot.org/uniprotkb/F1RT69" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RT69", "url": "https://www.uniprot.org/uniprotkb/F1RT69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RT69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RT69" }, { "id": "PF14160", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14160" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosome-associated FAM110 C-terminal", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 362, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RT69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RT69" }, { "id": "PF14161", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14161" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosome-associated FAM110 N-terminal", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 94, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 168 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RTJ1-1", "uniprot_ac": "F1RTJ1", "uniprot_id": "F1RTJ1_PIG", "mass": { "chemical_mass": 31733.0, "monoisotopic_mass": 31733.0 }, "refseq": { "ac": "XP_003484202", "name": "proline-rich protein 32", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003484202" }, "gene_names": [ { "name": "PRR32", "type": "recommended", "evidence": [ { "id": "F1RTJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTJ1" } ] }, { "name": "PRR32", "type": "synonym", "evidence": [ { "id": "XP_003484202", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003484202" } ] } ], "protein_names": [ { "name": "Proline rich 32", "type": "synonym", "evidence": [ { "id": "F1RTJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTJ1/entry#names_and_taxonomy" } ] }, { "name": "proline-rich protein 32", "type": "synonym", "evidence": [ { "id": "XP_003484202", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003484202" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RTJ1", "url": "https://www.uniprot.org/uniprotkb/F1RTJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRR32", "url": "https://www.uniprot.org/uniprotkb/F1RTJ1", "locus": { "chromosome": "X", "start_pos": 103815193, "end_pos": 103813405, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012647", "url": "https://www.ensembl.org/id/ENSSSCG00000012647" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012647", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012647", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737612", "url": "https://www.ncbi.nlm.nih.gov/gene/100737612", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737612", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737612", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCFIPPR", "url": "https://omabrowser.org/oma/group/HCFIPPR/", "database": "OMA", "categories": [ 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACTENVLGAHASSATAVAAEEHADREPRPAVQLQCPSSALQGNSESWGHPRLPLRPPFGVLTDLAREQLERPSERTESCIPVNCSRALNPLYRLPPAAAEEALATAEVNSSEGLAGQRQRGQDSIHVSQEFSGGPPVLMVGGTRVSNGSTERGGSSARLYVALPRGQGFLPSRGPQVRGPPHIPTLRSGIMMEVPQGSKRMTSKESLAQVSFPPGGPRHSVENWLRPVPLSSSTPGVPSCATAHCFIPPRPRSFNPFLAMPIAFAPPPLFGPLMPSYFANFPSWGMPAPACSNRENN", "length": 298, "header": "tr|F1RTJ1-1|F1RTJ1_PIG Isoform 1 of Proline rich 32 OS=Sus scrofa OX=9823 GN=PRR32 PE=4 SV=1 CANONICAL=F1RTJ1-1" }, "isoforms": [ { "isoform_ac": "F1RTJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RTJ1/entry", "sequence": { "sequence": "MACTENVLGAHASSATAVAAEEHADREPRPAVQLQCPSSALQGNSESWGHPRLPLRPPFGVLTDLAREQLERPSERTESCIPVNCSRALNPLYRLPPAAAEEALATAEVNSSEGLAGQRQRGQDSIHVSQEFSGGPPVLMVGGTRVSNGSTERGGSSARLYVALPRGQGFLPSRGPQVRGPPHIPTLRSGIMMEVPQGSKRMTSKESLAQVSFPPGGPRHSVENWLRPVPLSSSTPGVPSCATAHCFIPPRPRSFNPFLAMPIAFAPPPLFGPLMPSYFANFPSWGMPAPACSNRENN", "length": 298, "header": 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"https://www.ncbi.nlm.nih.gov/protein/XP_020937572" } ] } ], "function": [ { "annotation": "Cooperates with CIITA to promote transcription of MHC class I and MHC class II genes.", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5#function" }, { "database": "UniProtKB", "id": "ARBA00053079", "url": "https://www.uniprot.org/uniprotkb/ARBA00053079#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110258620", "url": "https://www.uniprot.org/uniprotkb/F1RTP5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000012359", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012359", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110258620", "url": "https://www.ncbi.nlm.nih.gov/gene/110258620", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511114", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511114", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:110258620", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110258620", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LICQYIF", "url": "https://omabrowser.org/oma/group/LICQYIF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RTP5", "url": "https://www.orthodb.org/?gene=F1RTP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46179", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46179", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46179:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46179:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020937572", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937572", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTP5-1", "url": "https://www.uniprot.org/uniprotkb/F1RTP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIPRLLPARGTRQGGGAGSPGGGGRIHGGPDPRAGQAPARRLLLLRGPQDGGSGRRREEARAASSGPGQSPSAPRPDRGSGGGGSGGGDDFFLVLLDPVGGDVETAGAGQAAGPVWREEAGLGPRLQGGESGANPEGRPALGPSCLSVIPAPVPALAPIPAPGLGPAAAFAGTVTIHNQNLLLRLENGVLTLATPPPPAWAPGVAPTPQPRGLIAPQAGIPHAAQPGDCPELPPDLLLAERAEPAPAPAPEAEAEGPAAAESPRGPPGPGQGVVLYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGGCGWTFTTSYKLKRHLQSHDKLRPFGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEVCEETFPTQAKLSAHQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFLCDFEGCGWNFTSMSKLLRHKRKHDDDRRFMCPVEGCGKSFTRAEHLKGHSITHLGTKPFVCPVEGCCARFSARSSLYIHSKKHLQDVDTWKSRCPVSTCNKLFTSKHSMKTHMAKRHNLRQDLLAQLEAANSLTPSSELTSQGQNDLSEAELVSLFSDAPGNSSAAVLDTALVNSGILTIDVASVNSTLAGNHVPASNNNSLGQAVDPPALMATGDLPQSLDTSLFFGTTAAGFQQSPLDMDDVSTLSVGTLGSLGSLAMKNSSQEPQALTPSSKLTADTDALTPSSTLCESSVSELLPPTKTEWNVHPDSDFFGQEEETQFGFSNPAGNHGSQKETDLITVTGSSFLV", "length": 810, "header": "tr|F1RTP5-1|F1RTP5_PIG Isoform 1 of C2H2-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110258620 PE=3 SV=1 CANONICAL=F1RTP5-1" }, "isoforms": [ { "isoform_ac": "F1RTP5-1", "url": "https://www.uniprot.org/uniprotkb/F1RTP5/entry", "sequence": { "sequence": "MEIPRLLPARGTRQGGGAGSPGGGGRIHGGPDPRAGQAPARRLLLLRGPQDGGSGRRREEARAASSGPGQSPSAPRPDRGSGGGGSGGGDDFFLVLLDPVGGDVETAGAGQAAGPVWREEAGLGPRLQGGESGANPEGRPALGPSCLSVIPAPVPALAPIPAPGLGPAAAFAGTVTIHNQNLLLRLENGVLTLATPPPPAWAPGVAPTPQPRGLIAPQAGIPHAAQPGDCPELPPDLLLAERAEPAPAPAPEAEAEGPAAAESPRGPPGPGQGVVLYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGGCGWTFTTSYKLKRHLQSHDKLRPFGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEVCEETFPTQAKLSAHQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFLCDFEGCGWNFTSMSKLLRHKRKHDDDRRFMCPVEGCGKSFTRAEHLKGHSITHLGTKPFVCPVEGCCARFSARSSLYIHSKKHLQDVDTWKSRCPVSTCNKLFTSKHSMKTHMAKRHNLRQDLLAQLEAANSLTPSSELTSQGQNDLSEAELVSLFSDAPGNSSAAVLDTALVNSGILTIDVASVNSTLAGNHVPASNNNSLGQAVDPPALMATGDLPQSLDTSLFFGTTAAGFQQSPLDMDDVSTLSVGTLGSLGSLAMKNSSQEPQALTPSSKLTADTDALTPSSTLCESSVSELLPPTKTEWNVHPDSDFFGQEEETQFGFSNPAGNHGSQKETDLITVTGSSFLV", "length": 810, "header": "tr|F1RTP5-1|F1RTP5_PIG Isoform 1 of C2H2-type domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110258620 PE=3 SV=1 CANONICAL=F1RTP5-1" }, "locus": { "chromosome": "AEMK02000171.1", "start_pos": 165294, "end_pos": 162865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013516.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013516.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013154.1", "url": "https://www.ensembl.org/id/ENSSSCP00000013154.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 208, "start_aa": "Thr", "end_pos": 208, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr208", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511114", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511114", "resource": "KEGG Pathway" }, { "id": "ssc:110258620", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110258620", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZIC0-1", "protein_name": "ZXD family zinc finger C", "gene_name": "ZXDC", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "METQGLPAAEAARARPGAQHGGPAAPPAAPGRPPPPPDWDPAASAAAASSAASSAASGLYVSFPVLLVEEKPEPGAGPAPSPSAPPAGPAPDSDGLLLVLNVVRGNAEPGSGDGEAGRAQPGPPPAEPPEEGPGSAPPPPPPPPPPPPPPRDGDGDGGAEDGSFSGTITINNQSLVVRIENGVLTLGPGAEQAASTAPPPAPPPPPAGPAEPPPGVPRPRSPPAFPCPEPRCGEAFPRKQQLRLHRLTAHGGGGEDSRGAPAAGGAARPFGCPVPGCAWSFATAYKLRRHLHSHDKLRPFACAAPGCSKRFTTVYNLRAHSRAHEQEAAHKCEACGQRFPSAARLAAHRRRSHLEPERPYRCDFPGCERTFITVSALFSHNRAHFREQEQFSCSFPGCNKQYDKACRLKIHMRSHTGERPFICDFEGCGWSFTSMSKLLRHKRKHEDDRRFTCPVEGCGKSFTRAEHLKGHSITHLGTKPFECPVEGCCAKFSARSSLYIHSKKHLQDVDSLKTRCPVSSCNKLFTSKHSMKTHMVKQHNFSPDLLTQLEATSSLTPSSELTSPGHSDLSNIDLVSLFSNVSSNNSGISADMALVNSGIVTIDVASVGSTLGGNLPVSSSSLSQAVDPLILVASSDMPQSLDSSLLLGTGTTVLQQSTLNLDDVQTVNAEALGSLASLSVRNPSQDVHGLTSSNNLTIDTATLTPSSSLGGTNVPELLTPTKMERNLLPSSDVVGQQEGSKVVTQFVFSNPPGSYSAQKEMDLSTMTGSSFLESSGSARTDYRAIQLAKKRKQKGNGSSTGTPGSGQRKSKGGKVSPTSFSSSAPGGRLGGNAVLPNGGLTIRDPATGAQYVQIQLLQDDPSGEGDLPFQLSSQSSSSHSQLTVDLPVHILQEPHNSAEDDAGSDNSQFTGSTINLQDLE", "length": 920 }, "evidence": [ { "id": "F1RTP5", "url": "https://omabrowser.org/oma/group/F1RTP5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P98169-1", "protein_name": "Zinc finger X-linked protein ZXDB", "gene_name": "ZXDB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEIPKLLPARGTLQGGGGGGIPAGGGRVHRGPDSPAGQVPTRRLLLLRGPQDGGPGRRREEASTASRGPGPSLLAPRTDQPSGGGGGGGDDFFLVLLDPVGGDVETAGSGQAAGPVLREEAEEGPGLQGGESGANPAGPTALGPRCLSAVPTPAPISAPGPAAAFAGTVTIHNQDLLLRFENGVLTLATPPPHAWEPGAAPAQQPGCLIAPQAGFPHAAHPGDCPELPPDLLLAEPAEPAPAPAPEEEAEGPAAALGPRGPLGSGPGVVLYLCPEAQCGQTFAKKHQLKVHLLTHSSSQGQRPFKCPLGGCGWTFTTSYKLKRHLQSHDKLRPFGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEVCEESFPTQAKLSAHQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSHTGERPFLCDFDGCGWNFTSMSKLLRHKRKHDDDRRFMCPVEGCGKSFTRAEHLKGHSITHLGTKPFVCPVAGCCARFSARSSLYIHSKKHLQDVDTWKSRCPISSCNKLFTSKHSMKTHMVKRHKVGQDLLAQLEAANSLTPSSELTSQRQNDLSDAEIVSLFSDVPDSTSAALLDTALVNSGILTIDVASVSSTLAGHLPANNNNSVGQAVDPPSLMATSDPPQSLDTSLFFGTAATGFQQSSLNMDEVSSVSVGPLGSLDSLAMKNSSPEPQALTPSSKLTVDTDALTPSSTLCENSVSELLTPTKAEWNVHPDSDFFGQEGETQFGFPNAAGNHGSQKETDLITVTGSSFLV", "length": 803 }, "evidence": [ { "id": "F1RTP5", "url": "https://omabrowser.org/oma/group/F1RTP5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" }, { "name": "C2H2 zinc finger domain binding", "id": "GO:0070742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070742", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RTP5", "url": "https://www.uniprot.org/uniprotkb/F1RTP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 470, "end_pos": 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RTS2", "url": "https://www.uniprot.org/uniprotkb/F1RTS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTS2-1", "url": "https://www.uniprot.org/uniprotkb/F1RTS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKLPPKPNDILSWVGAPEDFTEPEVFQVQTRLLEALFGPEGSRIPYVEKVSKVMLEMKALESSDLTEVMVYGPYLYKFRTKWMLQSMAEWHCQRQERGMRRLEEAMNSLELCPPMK", "length": 117, "header": "tr|F1RTS2-1|F1RTS2_PIG Isoform 1 of Embryonal stem cell-specific gene 1 protein OS=Sus scrofa OX=9823 GN=DPPA5 PE=3 SV=1 CANONICAL=F1RTS2-1" }, "isoforms": [ { "isoform_ac": "F1RTS2-1", "url": "https://www.uniprot.org/uniprotkb/F1RTS2/entry", "sequence": { "sequence": "MGKLPPKPNDILSWVGAPEDFTEPEVFQVQTRLLEALFGPEGSRIPYVEKVSKVMLEMKALESSDLTEVMVYGPYLYKFRTKWMLQSMAEWHCQRQERGMRRLEEAMNSLELCPPMK", "length": 117, "header": "tr|F1RTS2-1|F1RTS2_PIG Isoform 1 of Embryonal stem cell-specific gene 1 protein OS=Sus scrofa OX=9823 GN=DPPA5 PE=3 SV=1 CANONICAL=F1RTS2-1" }, "locus": { "chromosome": "1", "start_pos": 52987525, "end_pos": 52986633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004735.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004735.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004626.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004626.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RTS2", "url": "https://www.uniprot.org/uniprotkb/F1RTS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LVI1-1", "protein_name": "Embryonal stem cell-specific gene 1 protein", "gene_name": "Dppa5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPTTRIWLSGIKMATLVTRKDIPPWVKVPEDLKDPEVFQVHTLVLKSLFGPQGSRMPHIEQVSRAMFELKILESSGLTEVLIYGSCNHKLRAKWMLQSMAERYRLRQERGMLKLEEAMKTLELGQCLE", "length": 129 }, "evidence": [ { "id": "F1RTS2", "url": "https://omabrowser.org/oma/group/F1RTS2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NC42-1", "protein_name": "Developmental pluripotency-associated 5 protein", "gene_name": "DPPA5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTLPARRHIPPWVKVPEDLKDPEVFQVQTRLLKAIFGPDGSRIPYIEQVSKAMLELKALESSDLTEVVVYGSYLYKLRTKWMLQSMAEWHRQRQERGMLKLAEAMNALELGPWMK", "length": 116 }, "evidence": [ { "id": "F1RTS2", "url": "https://omabrowser.org/oma/group/F1RTS2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "G3HH43-1", "protein_name": "Embryonal stem cell-specific gene 1 protein", "gene_name": "Dppa5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATYPTRQDIPPWVKIPEDLRDPEVFQVQTLLLKYLFGPQGSRIPHIEQVSQAMFELKTLESSELTEVLVYGSDDHKLRAKWMLQSMAERCRLRQEREMLRLEEAMKTLELGQCWNEASFQPM", "length": 123 }, "evidence": [ { "id": "F1RTS2", "url": "https://omabrowser.org/oma/group/F1RTS2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9CQS7-1", "protein_name": "Developmental pluripotency-associated protein 5A", "gene_name": "Dppa5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMVTLVTRKDIPPWVKVPEDLKDPEVFQVQSLVLKYLFGPQGSRMSHIEQVSQAMFELKNLESPEELIEVFIYGSQNNKIRAKWMLQSMAERYHLRQQKGVLKLEESMKTLELGQCIE", "length": 118 }, "evidence": [ { "id": "F1RTS2", "url": "https://omabrowser.org/oma/group/F1RTS2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1RTS2", "url": "https://www.uniprot.org/uniprotkb/F1RTS2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RTS2", "url": "https://www.uniprot.org/uniprotkb/F1RTS2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "F1RTS2", "url": "https://www.uniprot.org/uniprotkb/F1RTS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RTS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTS2" }, { "id": "PF16005", "database": "Pfam", "url": 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"database": "UniProtKB", "id": "F1RTT1", "url": "https://www.uniprot.org/uniprotkb/F1RTT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM135A", "url": "https://www.uniprot.org/uniprotkb/F1RTT1", "locus": { "chromosome": "1", "start_pos": 50716357, "end_pos": 50579715, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004275", "url": "https://www.ensembl.org/id/ENSSSCG00000004275" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004275", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004275", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513127", "url": "https://www.ncbi.nlm.nih.gov/gene/100513127", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022122", "url": 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Classification" ] }, { "id": "PTHR12482:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12482:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12394", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12394", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003121322", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121322", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ALT2", "url": "https://www.uniprot.org/uniprotkb/A0A287ALT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ALT2-1", "url": 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"length": 1517, "header": "tr|F1RTT1-1|F1RTT1_PIG Isoform 1 of Family with sequence similarity 135 member A OS=Sus scrofa OX=9823 GN=FAM135A PE=3 SV=3 CANONICAL=F1RTT1-1" }, "isoforms": [ { "isoform_ac": "A0A287ALT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ALT2/entry", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPPRVPHRVEASLLHAAGMALAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDEKKIEETLEEMNFLLCLDLHFTDGDYSADDLNALQLISSRILKLHFSLHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFVIADAFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEELPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEELRLLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYEELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEGKLDMSQDDSEIAQVEYNVVPRSSSDDCHDHQTAPTSGAKTIQVKSCNKDPLSGEKITVKVGPWTELQQDEIFVDNLQLPNFESLESNDEDTSSDVKSSFNSKPNLDTMCKDSQSPNKSSNSAGTEIILNSKLVSLGSPCVVSGSVSTSTEVSEDRTVERKNSDALNLKQIYSEALTVKNETHLGTSEPFSASPDMVKQGLVEDYFGCQSSTDISDTYAISYSNSVSPQKEISEKEISNLQQEQGKDEEEEEQDQQMVQNGYYEETDYSALDGTGNAHCIDRDALEEERLIKSEKINSDYLRDGITMPTVCTSGCLSFPSAPRESPCSVKYSSKSKCDAITKQPSSTSYSFTSSVSWYENSPKPQIQAFLQAKEELKHLKLPGFMYSEVPLLASSVPYFSVEEEDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFRNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1097, "header": "tr|A0A287ALT2-1|A0A287ALT2_PIG Computationally mapped isoform of Family with sequence similarity 135 member A OS=Sus scrofa OX=9823 GN=FAM135A PE=3 SV=3 CANONICAL=F1RTT1-1" }, "locus": { "chromosome": "1", "start_pos": 50714669, "end_pos": 50596489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062959.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062959.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044854.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044854.3" } ] } }, { "isoform_ac": "A0A4X1T1W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T1W9/entry", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGKTFQILYKNEEVVLNDVMIFKVKMLLDEKKIEETLEEMNFLLCLDLHFTDGDYSADDLNALQLISSRILKLHFSLHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFVIADAFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEELPSCQKLELAKANMQVLYERLLRRKQPPTQKDTCLEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEELRLLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYEELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEGKLDMSQDDSEIAQVEYNVVPRSSSDDCHDHQTAPTSGAKTIQVKSCNKDPLSGEKITVKVGPWTELQQDEIFVDNLQLPNFESLESNGKSKSIEITLEKEAFQEAKCRAIGESLAKLRSNQPASSTRDYHVAVSGDTIRLPDGNATCTSSRFSDSGVESEPSSVATHPNPEAVFETVQGQGLYNNERLFPQLLMKPDCNVKFSLGSHCTESTSAFSEIQSSLTSINSLPSDDELSPDENPKKSVVPECHLSDSKTVLNVGTIDVPKGDDRKKSSIILQQQSVVFSQQLDNETIAVHSLNPSTKDPLQFVFSDEDTSSDVKSSFNSKPNLDTMCKDSQSPNKSSNSAGTEIILNSKLVSLGSPCVVSGSVSTSTEVSEDRTVERKNSDALNLKQIYSEALTVKNETHLGTSEPFSASPDMVKQGLVEDYFGCQSSTDISDTYAISYSNSVSPQKEISEKEISNLQQEQGKDEEEEEQDQQMVQNGYYEETDYSALDGTGNAHCIDRDALEEERLIKSEKINSDYLRDGITMPTVCTSGCLSFPSAPRESPCSVKYSSKSKCDAITKQPSSTSYSFTSSVSWYENSPKPQIQAFLQAKEELKHLKLPGFMYSEVPLLASSVPYFSVEEEDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFRNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1304, "header": "tr|A0A4X1T1W9-1|A0A4X1T1W9_PIG Computationally mapped isoform of Family with sequence similarity 135 member A OS=Sus scrofa OX=9823 GN=FAM135A PE=3 SV=1 CANONICAL=F1RTT1-1" }, "locus": { "chromosome": "1", "start_pos": 50714669, "end_pos": 50596489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054799.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054799.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053104.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053104.2" } ] } }, { "isoform_ac": "F1RTT1-1", "url": "https://www.uniprot.org/uniprotkb/F1RTT1/entry", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPPRVPHRVEASLLHAAGMALAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDEKKIEETLEEMNFLLCLDLHFTDGDYSADDLNALQLISSRILKLHFSLHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFVIADAFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEELPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEELRLLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYEELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEDLDAPWMGIQNLQRSESTRMDKYDTEESSIAGLSSPELKVRPAGASSVWYTEGEKQLTKSLKGKNEESIKSRVKVTKLMKTMKPENTKKLIKQNSKDSVVLVGYKCLKSTASNDLSKCFEGNPSHSQKEGLDATICGYNFDLKTHIRQTSQKEASYLPTNTERTEQKSPDIENMQPDLFDPLNSGSLNLCANLSISGKLDMSQDDSEIAQVEYNVVPRSSSDDCHDHQTAPTSGAKTIQVKSCNKDPLSGEKITVKVGPWTELQQDEIFVDNLQLPNFESLESNGKSKSIEITLEKEAFQEAKCRAIGESLAKLRSNQPASSTRDYHVAVSGDTIRLPDGNATCTSSRFSDSGVESEPSSVATHPNPEAVFETVQGQGLYNNERLFPQLLMKPDCNVKFSLGSHCTESTSAFSEIQSSLTSINSLPSDDELSPDENPKKSVVPECHLSDSKTVLNVGTIDVPKGDDRKKSSIILQQQSVVFSQQLDNETIAVHSLNPSTKDPLQFVFSDEDTSSDVKSSFNSKPNLDTMCKDSQSPNKSSNSAGTEIILNSKLVSLGSPCVVSGSVSTSTEVSEDRTVERKNSDALNLKQIYSEALTVKNETHLGTSEPFSASPDMVKQGLVEDYFGCQSSTDISDTYAISYSNSVSPQKEISEKEISNLQQEQGKDEEEEEQDQQMVQNGYYEETDYSALDGTGNAHCIDRDALEEERLIKSEKINSDYLRDGITMPTVCTSGCLSFPSAPRESPCSVKYSSKSKCDAITKQPSSTSYSFTSSVSWYENSPKPQIQAFLQAKEELKHLKLPGFMYSEVPLLASSVPYFSVEEEDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFRYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFRNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1517, "header": "tr|F1RTT1-1|F1RTT1_PIG Isoform 1 of Family with sequence similarity 135 member A OS=Sus scrofa OX=9823 GN=FAM135A PE=3 SV=3 CANONICAL=F1RTT1-1" }, "locus": { "chromosome": "1", "start_pos": 50714669, "end_pos": 50596489, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004725.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004725.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004617.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004617.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RTT1", "url": "https://www.uniprot.org/uniprotkb/F1RTT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513127", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513127", "resource": "KEGG Pathway" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZQV8-1", "protein_name": "Family with sequence similarity 135, member A", "gene_name": "Fam135a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPPRIPHRVEASLLHATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEISFLLSLDLHFTDGDYSADDLNALQLISSRTLKLHYSIYRGLHHHANIMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRSAPAQSKDSAIPTLESVVFGVNYTKQLSPDGCTFLIAEPFLQHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLDLAKASMQVLYERLLRRAQPRTQNDTCLEAMDTEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEELRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEDLDAPWMGIQSLQISEASKVDKHETEESSVAGLSSPELKVRPAVASSNCYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKPETTKKLIKQNSKDSVVLVSYKCLKNTASSDLTKCFEGNPSYSQKEGLDPTMCRDNFDPKTYIRQPSQKEASSLSADTDRAEHKSPDTETMHPDQSALLNSGSLNLCANLSISGKLGISQDDSDIPDTEHKLASRSPSNDCLDCQTAPSSGVRTLEVKPSSEESFSEEKVTVKIGPWTELQEDELFVNNLLPDFEALDSNDKSKSIDLPLEKDALQEAKCRCTEESLTKFRSNLPAPSTKEYHVVVSGDTIKLPDSNAAYASSRFSDSGVESEPSSFATHPNPEIAFETLQGPGPCNNERLLPQLLMKPDHNVKLSLGSHCTESTSALSEIQQSSLTSINSLPSDDELSPDDDCKRCAVADCQLSDSKTVLHPGTTSLPKWDDTKKSSVILQQQCVVFSGHLDNDTLAMHSLDLSSEDPLQLILSGEDASSGVRSHWGSKPHLDTVFTGSQSHSTSSINSVETVPTLNSKLICLGSPCVVSGSVCTDAELSEDRTVEGKSSEPLNHKQICSEGPVVESHPLSTGDDSLSSSTDVVKQGLVEDYFGSQSNTDVSDACAVTYHSLVSSQETCDKGIGDLQQEQGKEGMQDDQEMVQNGYHEETDFPATGGAVSVHCVRADELGGQRHELSENLSSDYLRAAVTVPAVCTSACLSFPSAPRESPCVKYSSRSKVDAITKQPSSISYNFTSSTSWYENSPKPQIHAFLQAKEELKQLKLPGFMYSDVPLLASSAPYFSMEEEEGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1540 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M6Z9L3-1", "protein_name": "Protein FAM135A isoform X1", "gene_name": "fam135a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTEVQATVEFSVELHKFYNVDLFQRGFYQVRASMKVPPRIPQRVEASLLHPIGSDLAFPASVQDDVVCSKTFQILYKNEEIVVNDVFVFKVMMLLDAKKGVFLLQVEESLNEVDFQLCLDLFFTDGDYSPEEPSSLQSISSRTLRLHFSLHRGIHHHVNVMFDYFHLSVISATIHASLVALHQPLISFPRPVKSTWLNRNAPAQSKDSLIPPLETVVFGSTYVKQLSPDGKSFLVSDQCLQHAFSLHQNMCANLLRAYQSLFCYLTSLTKNLPASQRMELAKPSMQVLYERVLRRPYPPGQRHVYIEELDVEVRLHELCEQVKQKAESPDELAELVNMNLAQLCSLLMALWGNFLEVVSLNERVFVLLAQEHHTLRVQRFAEAFFCLEHPRQSALAYQELHAHSHQQMTTAIKSSSYFLSLPPLPVECADLDGDVNSLPIIFEDRYLESVTEDRDGPWLGLQNNRSGSVSAKADRSNSKDCIASGALGPYPDKQQASFATAWPEQNEPSLKSKAKSIKLKKNTKTENSKKLIRQSSKDSVVLTGYKNLKVPHSEKTIKSKDIDHQCNQRDELEDGGKFLLQNETTTTHCAQNAKDCTSGNLQGNATILSDGFPNLMSLQMQARPQAGTGAEAAAARVDPTHPPAGLRHIDVKPSDKDPYQGDKVTVLLPHHPERTTKRDVPEITQTDFSEFKSRVGDGATFVGPCGAALRNDNIPQASSRLSDSGIESEPSSATQLAPVSPSPFAPIGIEAPTELIPHRPPPLSPASRGATALEGLNPESTSGVSGVQSSLTSINSLPSDDEVETEATSRKSSILVQEQSLIFSGESQSLLLTNSRVLAQQKASHGDGMDSALQSRCETSASDRLVGSNETDLPGGPEACSEPQTAAQSSTSVTSSTDMVKKGFVENYFGSRSSTDISEISPLETAAITLGIQTCPNANDEEDEEEEQEHEMIENGYYEETDGVVYVNGLPEDEGRCEDGGAEGRTLFYDHLGLEQLQETYIPSAGIRTRPTGPAPTSSDLCWYKSAPTAQMTAFVQAKEELKQLKLPGFLYSEVADLASTVPYFSMDEDENCDDGIHLIVCVHGLDGNSADLRLVKTYLELGLPGARIDFLMSERNQNDTFADFESMTDRLLDEIVQYIQIYNLTVSKISFVGHSLGNLIVRSVLTRPRFKCYLSRLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSKKAGLQFFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQTGPVYAEMIENLLLPVLQNKDCNLVRYDVIHALPNTANSLIGRAAHIAVLDSEIFLEKFFLVAGLKFFQ", "length": 1344 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0X9L1-1", "protein_name": "Family with sequence similarity 135 member A", "gene_name": "FAM135A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVVVSLSELLRFLMKFYSSFTSSSAMAVNKLTKVLTSFDIFILINMSEVQAMVEFSVELHKFFNVDLFQRGFYQIRASMKIPPRIPHKLEASLLHATGADLAFPASIHDNIVYSKTFQILYKNEEVSVNDVMIFKIKMLLDERKIEESLNEMNFLLTLDLHFTDTDYSPDDLSTLQPISSRTLKLHFNLHRGLHHYVNVMFDYFHLSVISVIVHASLVALHQPLISFPRPVKNTWLNRNAPAQNRDSVIPSLESVVFGNNYTKQLSADGCSFVVSESFLSHAYNFHYTLCASLLLAFKGLHSYFLMITKELPSSHRIELAKASMQVLYERLLRRKFPRTQRDAYLENIDVEVRLSELCEEVKKMENPDELAELINMNLAQLCSLLMALWGQFLEVITLQEEVTALLAQEHHTLRVRRFAEAFFCLEHPRQAALAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDTNSLPIIFEDRYLDSVTEDMDVPWLVVQNLPRSESNKLDKIEAEEGFVAGFTSPELKIRPAGASSLWHSENEKMLTKSLKGKNEDANKPKVKVTKLMKTMKPENTKKVVKQNSKDSVVLVGYKCLKSAALEDASKSPEGRPSCNTNEGLDPAVSGFPCDTKTCTRQVSQREFVCLSSGTEEKTAKIEGVQPSQGSPVHSENVAIFSRLTISQAGPGTVQADSALQPRDTLEGCHGGQPASLGVRTIEVKPSSKNPYEGEKVTVHIGSWAELPQDGVQGENLQTPNIQASESGNKLHSGEPVLEKEDVHEKSFQHTSDVLTKMKNNQPSLSTKESQLSVSGDVTKLPDVNVTYASSRFSDSGIESEPSSFATLPNPDQVFENVQGQSACNAERLFPQLLLKPDYAIKNALESHCTESTSAVSEIQSSLTSINSLPSDDDELSPDENSKITIVPECQLSDSKTVLDLGAIDLPKCDDSKKSSTNVQQHCVVFSGHSDKETLSIHSSVSGTKELLHLVVSDEVTSSDVKSNSLQADLGTTCTDSQVLERYCDTTEDAAKLHLEITCMGEPSVLSGPSSLNAGYEVEKPNEGKYNEPLELKEAVEELSAAKSDTGTDNPSPTSSTDIVKQGLVENYFGSRSSTDISDIWPMDNSNPVSPQKETYEKQIICSSQQDDEEEEDQEMIENGYYEETDYGILDGAAGAGQDPDLAEERALRSERIDSGHLRDGITVPPVCTPGCLSFPSSLRDSPCNVICSSRNKSDAITQQPGSTSYSSALPVSWYESSPKPQMLAFLQAKEELKQLKLPGFMYSDVFKLASSVPYFSMEEDDCSEEGIHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYNLTLSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSKKAGLHYFKNIVLVGSLQDRYVPYHSARIEMCKTALKDKQSGPIYAEMIQNLLLPVLQNKECNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1572 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9RX27-1", "protein_name": "Family with sequence similarity 135 member A", "gene_name": "FAM135A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPPRVPHRVEASLLHAAGMTLAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDEKKIEETLEEMNFLLSLDLHFTDGDYSADDLNALQLISSRTLKLHFSLQRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFVIADSFLRHAYRFHYTLCAALLLAFKGLHSYFIMVTEELPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRLLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEDLDAPWMGIQSLQRSESSRMDKCETEESTLAGLSSPELKIRPAGTSSFWSTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKPENTKKLIKQNSKDLVVLVGYKCLKSTASNDLFKSFEGNPTHSQKEGLDPTIYGYNFDPKTYMRQTSQKEASYLPANTERTEQKSPDIENVQPDLFDPLNSGSLNLCANLSISGKLDISQDDSEIAQVEHSVASRSSSDDCHDRQSAPTSGVRTIEVKPCNKDCFSGEKVTVKIGPWTELQQDEIFVDNLQLPNFESLDSNGKSKPMEITLEKEALQEAKCHSVGESLAKLRNNQPASTREYHLVVSGDTIKLPDISATCASSRFSDSGVESEPSSVAAHPNPDIVFETVPGQGLFISERLFPQLLMKPDCNVKFSLGSHCTESTSAFSEIQSSLTSINSLPSDDELSPDENPKKSAVSECHLSDSKTVLNLGTTDVPKCDDRKKSSIILQQQSVIFSGHLDNETIEIHSLNSSTKDPLQFVFSDEDTSSDVKSSCSSKPNLDTVCKDSQSPDKSSDSVGTTVPLSSELACSGTPCVVSGSVSTRADSSEDRTVKRKNSDALNPKQMCSEAPAVKDETYLGTGDAFSASPDMVKQGLVENYFGCQSSTDVSDTCAISYSHSVSPQKETSGKEMSSPQRDQGKDEEEEEQDQQMVQNGYYEEADYSSLEAAGDAHCADGADLGGERLAKSERLAGDYLSDGITMPTVCTSGCLSFPSAPRESPCGVKYSSKSKCDAVTKQPSSASHSCTSSLSWYENSPKPQIQAFLQAKDELKQLKLPGFMYSDVPLLASSVPYFCVEEEEEDHCGNGVHLIVCVHGLDGNSADLRLVKTYIELGLPGERIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSRLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFRNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1518 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M9PGQ5-1", "protein_name": "DUF676 domain-containing protein", "gene_name": "CG9137", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGDLQATIEFVVELHKFFNVDLFQRGLYQVRCGLRVSPRLLVQVETSIPEASGPGKQNGHANGANATDHGSSDSERGELSPGEVPRLHESPPGGSCSSASVINGSGASRIFQILYRNEEVPLRDIIHFRSHLLVDSRHLKESIERAEFSLQLELWFGEQNGSSSLNGNGGGSGMGSFSGPASSALTLASTRNLQLNFHPGRGLHYHLPVLFDYFHLAAISVGIHASLVALHQPYIKKSVFSYMKFCAPRSSKPWSAGKLSCRGNTSPGPLEAVFFGPQIGGTTKCSGGPAGRLLQSRAIHREICSLLLGAIEQLKATLNEFSTVLPPSINSQIGSPPLRENDTGERLQLLLDQAKQLEAEEDFAIRANSDIAQLCAESIFWWRRVLLASRSSTAVHTLLARKHHILRVRRFAEGFFVLEQPRHAAAAGCPDQTNGSPSPGHCQGYVAIAELARRSRYLQSLPPLPVHCTPIDGDASSLPLIFEDRYVTTNSTYARRRSGSDPQLEDAVSVVGVQKKKVDKTHSSSSLNGIKDCLACHFDYDYPQTNGSGPAHPHAKCVITPRFALGGEVLQASLTIAPSKEAAPEAVAPPTLRHNLSRHSVTGLLEDLDLDSSLPARHSKSLDQLDGCEGLATNPVSTTNNHTLPRLQADDLMRNICEFRQRYGKFDYLHEIKLLNPPKQQQQAVPQQQQQCNNGYNSLPKSMVPPRNSYPPPPPSQHTTMPRSSSSQIPRAVEIARVRVSDIKEMLRQGQLRKESSSSESDMMQKLQMLSSNSVPFRLEGTSNNNTTSSDPNTSGFSESLPNLAPPPEFDSDSQLRRQRSNSTSSLSEESGWVSSRRSSLAISSPDTITSTGMTNRQRHTQLNLGMGMAMETRLNGEQLRLRLQKVLEQQQLQQQHPHKNRKRQAGTSSQSRTPARQQTEVHKKISSVTVNIKRERSRYQLDRLRHLPNGESTEVEEMEPPPRRNRHKTACEKSKSDFDITSLKDMQPLDAVCLPPPQQFQDQEQELALVLAPPPPDEFRDPPPEPAPAAPIAPVPPPAAALPPTGKTKIVACHLPPPLKERQPIGAIDNPVYHIYESLRPISTPAIFSNKPVLKSHSLAELKRPQNLPNHSINHHCKTHAINANGNVLENGLDHEQDEIKENSNGQVRTNKQGHGSNTNSKHKRKGQLASAVQEAPPSISLLEFEKYREEFRKQIKYQGSIYSDYVQLASELPYFYISDEYRAFSPNGMHLVICVHGLDGNSADLRLVRTYLELGLPGVNLEFLMSERNQGDTFSDFDTMTDRLVTEILYHIDSCALNPARISFVAHSLGTIIVRSALARPQMRPLLPRLHTFLSLSGPHLGTLYNTSGLVNMGMWFMQKWKKSGSLLQLCMRDTTDMRNSFLYRLSQRSTLHHFKNILLCGSSQDRYVPAHSARLELCKAAMRDSSSLGTIYREMVHNIIAPILARPELTLARFDVHHALPHTANTLIGRAAHIAVLDSELFIEKFMLIAGLKYFS", "length": 1499 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q6NS59-1", "protein_name": "Protein FAM135A", "gene_name": "Fam135a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPARIPHRVEASLLHATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEISFLLSLGLHFTDGDYSADDLNALQLISSRTLKLHYSICRGLHHHANVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQSKDSAIPTLESVVFGINYTKQLSPDGCSFLIAESFLHHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLDLEEMDVEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEDLRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEDLDAPWMGIQSLQISEASKTDKHETEESSVVGLSSPELKVRPAVASSNCYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKTTASSDFTKCLEGSPSHSQKEGLDPTLCAGNFDPKTYTRQPSQKEASSLSANTDRSEHKSPDTENMQPDQFELLNSGSLNLCANLSISGKLAISQDNSDIPDTEHNLASTSSSNDCHDYQTTPSSGVRTLEVKSSSKESFNGEKITVKIGPWTELQEAELFVDNLLPDFEALDSNDKPKSIDIPLERDALQETKCHSTEESLTKFRSNLPAPSTKEYHVAVSSDTIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEIAFETLQGPGPCNNERLFPQLLMKPDHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPDCHLSDSKTVFNLGTMDLPKCDDTKKSSIILQQQSVVFSGHLDNDTLAMHSLDLSTEDPLRLVFLDEDASSGVRSSWGSKPHLDAPFTGPQSQGTSSNNSTESVPTLNSKLICLGSPCVVSGSVCTDAGLSADRTVEGKSGEPLNHKQVCSAAPVVESDPLSSSTDVVKQGLVENYFGSQSTTDVSDACAITCHSPVSSQETCDKGISDLQQEQGKEEEEEDQEMVQNGYHEETDFSATDGTVSVHYISGNELGEGRHEQSEKLSSNYLSAGVTVPAVCTSGCLSFPSALRESPCVKYSSRSKVDAITKQPSSISYNFSSSTSWYENSPKPQIHAFLQAKEELKQLRLPGFMYSDVPLLASSAPYFSMDEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1506 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2D6-1", "protein_name": "Protein FAM135A", "gene_name": "FAM135A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPSRIPHRVEASLLHATGMTLAFPASVHDSLICSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEMNFLLSLDLHFTDGDYSADDLNALQLISSRTLKLHFSPHRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKTTWLNRNAPAQNKDSVIPTLESVVFGINYTKQLSPDGCSFIIADSFLHHAYRFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELEEMDVEARLTELCEEVKKIENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRILLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVTEDLDAPWMGIQNLQRSESSKMDKYETEESSVAGLSSPELKVRPAGASSIWYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKSENTKKLIKQNSKDSVVLVGYKCLKSTASNDLIKCFEGNPSHSQKEGLDPTICGYNFDPKTYMRQTSQKEASCLPTNTERTEQKSPDIENVQPDQFDPLNSGNLNLCANLSISGKLDISQDDSEITQMEHNLASRRSSDDCHDHQTTPSLGVRTIEIKPSNKDPFSGENITVKLGPWTELRQEEILVDNLLPNFESLESNGKSKSIEITFEKEALQEAKCLSIGESLTKLRSNLPAPSTKEYHVVVSGDTIKLPDISATYASSRFSDSGVESEPSSFATHPNTDLVFETVQGQGPCNSERLFPQLLMKPDYNVKFSLGNHCTESTSAISEIQSSLTSINSLPSDDELSPDENSKKSVVPECHLNDSKTVLNLGTTDLPKCDDTKKSSITLQQQSVVFSGNLDNETVAIHSLNSSIKDPLQFVFSDEETSSDVKSSCSSKPNLDTMCKGFQSPDKSNNSTGTAITLNSKLICLGTPCVISGSISSNTDVSEDRTMKKNSDVLNLTQMYSEIPTVESETHLGTSDPFSASTDIVKQGLVENYFGSQSSTDISDTCAVSYSNALSPQKETSEKEISNLQQEQDKEDEEEEQDQQMVQNGYYEETDYSALDGTINAHYTSRDELMEERLTKSEKINSDYLRDGINMPTVCTSGCLSFPSAPRESPCNVKYSSKSKFDAITKQPSSTSYNFTSSISWYESSPKPQIQAFLQAKEELKLLKLPGFMYSEVPLLASSVPYFSVEEEDGSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKDCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1515 }, "evidence": [ { "id": "F1RTT1", "url": "https://omabrowser.org/oma/group/F1RTT1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1RTT1", "url": "https://www.uniprot.org/uniprotkb/F1RTT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1019, "end_pos": 1021, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1292, "end_pos": 1294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1367, "end_pos": 1369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" }, { "start_pos": 760, "end_pos": 762, "annotation": "n_glycosylation_sequon" }, { "start_pos": 906, "end_pos": 908, "annotation": "n_glycosylation_sequon" }, { "start_pos": 956, "end_pos": 958, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RTT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTT1" }, { "id": "PF05057", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUF676", "eco_id": "ECO_0000259", "start_pos": 1247, "end_pos": 1441, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1019, "end_pos": 1021 }, { "start_pos": 1292, "end_pos": 1294 }, { "start_pos": 1367, "end_pos": 1369 }, { "start_pos": 215, "end_pos": 217 }, { "start_pos": 381, "end_pos": 383 }, { "start_pos": 611, "end_pos": 613 }, { "start_pos": 760, "end_pos": 762 }, { "start_pos": 906, "end_pos": 908 }, { "start_pos": 956, "end_pos": 958 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RTV7-1", "uniprot_ac": "F1RTV7", "uniprot_id": "F1RTV7_PIG", "mass": { "chemical_mass": 13810.0, "monoisotopic_mass": 13810.0 }, "refseq": { "ac": "NP_001405228", "name": "ADP-ribosylation factor-like protein 9 isoform 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001405228" }, "gene_names": [ { "name": "ARL9", "type": "recommended", "evidence": [ { "id": "F1RTV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTV7" } ] }, { "name": "ARL9", "type": "synonym", "evidence": [ { "id": "NP_001405228", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001405228" } ] } ], "protein_names": [ { "name": "ADP ribosylation factor like GTPase 9", "type": "synonym", "evidence": [ { "id": "F1RTV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RTV7/entry#names_and_taxonomy" } ] }, { "name": "ADP-ribosylation factor-like protein 9 isoform 2", "type": "synonym", "evidence": [ { "id": "NP_001405228", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001405228" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RTV7", "url": "https://www.uniprot.org/uniprotkb/F1RTV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARL9", "url": "https://www.uniprot.org/uniprotkb/F1RTV7", "locus": {} } ], "crossref": [ { "id": "F1RTV7", "url": "https://alphafold.ebi.ac.uk/entry/F1RTV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008899", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008899", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521807", "url": "https://www.ncbi.nlm.nih.gov/gene/100521807", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521807", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521807", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FAHKQDL", "url": "https://omabrowser.org/oma/group/FAHKQDL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RTV7", "url": "https://www.orthodb.org/?gene=F1RTV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46724", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46724", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46724:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46724:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001405228", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001405228", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RTV7", "url": "https://www.uniprot.org/uniprotkb/F1RTV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RTV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RTV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFLEIGGSEPYRSYWEKYLSRGLLLIFVVDSADHGRLPEAKKHLHRLIGTNPVLPLVVFANKQDLESAYPIADIHEALALSEVGNDRKMFLFGTQVTEDGSEIPWVMQDARDLIAQLAADAQ", "length": 123, "header": "tr|F1RTV7-1|F1RTV7_PIG Isoform 1 of ADP ribosylation factor like GTPase 9 OS=Sus scrofa OX=9823 GN=ARL9 PE=4 SV=3 CANONICAL=F1RTV7-1" }, "isoforms": [ { "isoform_ac": "F1RTV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RTV7/entry", "sequence": { "sequence": "MEFLEIGGSEPYRSYWEKYLSRGLLLIFVVDSADHGRLPEAKKHLHRLIGTNPVLPLVVFANKQDLESAYPIADIHEALALSEVGNDRKMFLFGTQVTEDGSEIPWVMQDARDLIAQLAADAQ", "length": 123, "header": "tr|F1RTV7-1|F1RTV7_PIG Isoform 1 of ADP ribosylation factor like GTPase 9 OS=Sus scrofa OX=9823 GN=ARL9 PE=4 SV=3 CANONICAL=F1RTV7-1" }, "locus": { "chromosome": "8", "start_pos": 55775915, "end_pos": 55767421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009743.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009743.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009491.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009491.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., 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"database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13223:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13223:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05427", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05427", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231438", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231438", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RU24", "url": "https://www.uniprot.org/uniprotkb/F1RU24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU24-1", "url": "https://www.uniprot.org/uniprotkb/F1RU24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATAAVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQVDDMDMDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLKDVQLFLNQYSASVHSLDGFRHQALWDRYMGTLHGCLLRLYHD", "length": 357, "header": "tr|F1RU24-1|F1RU24_PIG Isoform 1 of FGF1 intracellular binding protein OS=Sus scrofa OX=9823 GN=FIBP PE=1 SV=1 CANONICAL=F1RU24-1" }, "isoforms": [ { "isoform_ac": "F1RU24-1", "url": "https://www.uniprot.org/uniprotkb/F1RU24/entry", "sequence": { "sequence": "MTSELDIFVGNTTLIDEDVYRLWLDGYSVNDAVALRVRSGILEQTGATAAVLQSDTMDHYRTFHMLERLLHAPPKLLHQLIFQIPPSRQALLIERYYAFDEAFVREVLGKKLSKGTKKDLDDISTKTGITLKSCRRQFDNFKRVFKVVEEMRGSLVDNIQQHFLLSDRLARDYAAIVFFANNRFETGKKKLQYLSFGDFAFCAELMIQNWTLGAVDSQVDDMDMDLDKEFLQDLKELKVLVADKDLLDLHKSLVCTALRGKLGVFSEMEANFKNLSRGLVNVAAKLTHNKDVRDLFVDLVEKFVEPCRSDHWPLKDVQLFLNQYSASVHSLDGFRHQALWDRYMGTLHGCLLRLYHD", "length": 357, "header": "tr|F1RU24-1|F1RU24_PIG Isoform 1 of FGF1 intracellular binding protein OS=Sus scrofa OX=9823 GN=FIBP PE=1 SV=1 CANONICAL=F1RU24-1" }, "locus": { "chromosome": "2", "start_pos": 6445871, "end_pos": 6440585, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014176.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014176.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013790.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013790.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RU24", "url": "https://www.uniprot.org/uniprotkb/F1RU24" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525557", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525557", "resource": "KEGG Pathway" } ], "orthologs": 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"https://www.ncbi.nlm.nih.gov/protein/XP_003122602" }, "gene_names": [ { "name": "C11orf68", "type": "recommended", "evidence": [ { "id": "F1RU27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU27" } ] }, { "name": "C2H11orf68", "type": "synonym", "evidence": [ { "id": "XP_003122602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122602" } ] } ], "protein_names": [ { "name": "Chromosome 2 C11orf68 homolog", "type": "synonym", "evidence": [ { "id": "F1RU27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU27/entry#names_and_taxonomy" } ] }, { "name": "UPF0696 protein C11orf68 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003122602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122602" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU27", "url": "https://www.uniprot.org/uniprotkb/F1RU27" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C11orf68", "url": "https://www.uniprot.org/uniprotkb/F1RU27", "locus": { "chromosome": "2", "start_pos": 6414280, "end_pos": 6411833, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012966", "url": "https://www.ensembl.org/id/ENSSSCG00000012966" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012966", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012966", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516777", "url": "https://www.ncbi.nlm.nih.gov/gene/100516777", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023398", "url": 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"categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RU27", "url": "https://www.uniprot.org/uniprotkb/F1RU27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU27-1", "url": "https://www.uniprot.org/uniprotkb/F1RU27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRLSIKLLLRRRGNKMAAAAAAVAGAGRGGGGAEPRQERSRARGWAGAERSEGRRMEPGEELEDEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYVPNSGDVQGLQAAWEALQTSGRPVTPGTLRQLAITHHVLSGKWLIHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADAAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT", "length": 307, "header": "tr|F1RU27-1|F1RU27_PIG Isoform 1 of Chromosome 2 C11orf68 homolog OS=Sus scrofa OX=9823 GN=C11orf68 PE=1 SV=2 CANONICAL=F1RU27-1" }, "isoforms": [ { "isoform_ac": "F1RU27-1", "url": "https://www.uniprot.org/uniprotkb/F1RU27/entry", "sequence": { "sequence": "MLRLSIKLLLRRRGNKMAAAAAAVAGAGRGGGGAEPRQERSRARGWAGAERSEGRRMEPGEELEDEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYVPNSGDVQGLQAAWEALQTSGRPVTPGTLRQLAITHHVLSGKWLIHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADAAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT", "length": 307, "header": "tr|F1RU27-1|F1RU27_PIG Isoform 1 of Chromosome 2 C11orf68 homolog OS=Sus scrofa OX=9823 GN=C11orf68 PE=1 SV=2 CANONICAL=F1RU27-1" }, "locus": { "chromosome": "2", "start_pos": 6413641, "end_pos": 6412032, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014173.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014173.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013787.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013787.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 167, "start_aa": "Thr", "end_pos": 167, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr167", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RU27", "url": "https://www.uniprot.org/uniprotkb/F1RU27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516777", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516777", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4IFA8-1", "protein_name": "UPF0696 protein C11orf68 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAAAAVAGAGRGGGGGAEPRQERSRARGWAGAERSEGRRMEPGEELEEEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARMTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYIPNSGDVQGLQAAWEALQTSGRPVTPGTLRQLAITHQVLSGKWLIHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADAAIRAAGVKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT", "length": 292 }, "evidence": [ { "id": "F1RU27", "url": "https://omabrowser.org/oma/group/F1RU27/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q566Q8-1", "protein_name": "UPF0696 protein C11orf68 homolog", "gene_name": "Bles03", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAAAAVAGAGRGGGGGADPGQERSRARSWVGAERSEGRRMEPNEELEEEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYTPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLIHLAPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGNARGSRVLDRANNVELT", "length": 292 }, "evidence": [ { "id": "F1RU27", "url": "https://omabrowser.org/oma/group/F1RU27/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NWH0-1", "protein_name": "UPF0696 protein C11orf68 homolog", "gene_name": "", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAADESPASPSELSECFSAEDYAAESLAADLDPWITFDARKTPRAEFSSWLQSHRPSSVSRYGDGEAGAGPVGWIAVRGPDYSEQSGDVEGLQDSWETLLTSGRSVSFQNIRELALNHSVLDGKWLMHLDTGFKVDRAWESIARATVLEGKIWSAKVSPRDPSSNSRHVICVYNQNFTDEEQVVRLDSAIRAAGVKCVLYYKPDVYTYLGIYRNNRWKLCPTIYESMFDLESVPRRSHILNKVTNLELS", "length": 249 }, "evidence": [ { "id": "F1RU27", "url": "https://omabrowser.org/oma/group/F1RU27/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8VD62-2", "protein_name": "UPF0696 protein C11orf68 homolog", "gene_name": "Bles03", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAAAVAGAGRGGGGGGGGGGAADPGQERSRARSWVGAERSEGRRMEPNEELEEEDSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAAYGQGYTPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLIHLSPGFKLDHAWAGIARAVVEGRLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGNTRGSRVLDRANNVELT", "length": 298 }, "evidence": [ { "id": "F1RU27", "url": "https://omabrowser.org/oma/group/F1RU27/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H3H3-2", "protein_name": "UPF0696 protein C11orf68", "gene_name": "C11orf68", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAAAAVAGVGRGGGGAEPRQERSRARGWAGVERSEGRRMEPGEELEEEGSPGGREDGFTAEHLAAEAMAADMDPWLVFDARTTPATELDAWLAKYPPSQVTRYGDPGSPNSEPVGWIAVYGQGYSPNSGDVQGLQAAWEALQTSGRPITPGTLRQLAITHHVLSGKWLMHLAPGFKLDHAWAGIARAVVEGQLQVAKVSPRAKEGGRQVICVYTDDFTDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRFQLGGSARGSRVLDRANNVELT", "length": 292 }, "evidence": [ { "id": "F1RU27", "url": "https://omabrowser.org/oma/group/F1RU27/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 167 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RU29-1", "uniprot_ac": "F1RU29", "uniprot_id": "F1RU29_PIG", "mass": { "chemical_mass": 60467.0, "monoisotopic_mass": 60467.0 }, "refseq": {}, "gene_names": [ { "name": "TSGA10IP", "type": "recommended", "evidence": [ { "id": "F1RU29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU29" } ] } ], "protein_names": [ { "name": "Testis specific 10 interacting protein", "type": "synonym", "evidence": [ { "id": "F1RU29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU29", "url": "https://www.uniprot.org/uniprotkb/F1RU29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSGA10IP", "url": "https://www.uniprot.org/uniprotkb/F1RU29", "locus": { "chromosome": "2", "start_pos": 6374617, "end_pos": 6387718, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012964", "url": "https://www.ensembl.org/id/ENSSSCG00000012964" } ] } } ], "crossref": [ { "id": "F1RU29", "url": "https://alphafold.ebi.ac.uk/entry/F1RU29", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012964", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012964", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR051655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DCGPQKQ", "url": "https://omabrowser.org/oma/group/DCGPQKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21501", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21501", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21501:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21501:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1RU29", "url": "https://www.uniprot.org/uniprotkb/F1RU29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU29-1", "url": "https://www.uniprot.org/uniprotkb/F1RU29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGQDTAMLNAHQPLVRTTSRRPGPDTRLQAPGTAAGLLQLLSRITQAEQGGLGSGDHKIRDQPQRSQSAGQTTKKDRRLRGRNKKSQGSAEAEDLLHSPRKPSFPFQWAWESFTEDGQALLQPGSASAPGHQGLPSPPGVTRPRARHSSAASLPEAHDFCWKTEVPSLEKRQQPGACSGLLGPPGKGAGQAREPPGECGSEWALESEEAAELEGPGAEEAKRGLSPGELPQLLRRGAILEEEQFAEEAEEGEPRTPPRRRAGSRRKGQNSGEETSDEHQLQCQAGSPSTNSLRGPQRRKPRAQEPEGLQDLERLRRQWQQELDCGEKQPWKALRTAVQASSWSGKAHTLRDDETFLFANFPNRTFHKRQEATRSLLQAWERQQLEELQQAELRRAREQRVQQQVARCLAAYAPRGSRGPGAAQRKLEELRRQERQRFAEYQAELQGIQHRVQARPYLFQQAMQVNARLTVTRRFSQVLSELGLDEEQLLAEAGKGDREGAPRKPRSHRSVGARMQDSSQSPTKTGSTGSQPDKHSNSSSDQESGV", "length": 546, "header": "tr|F1RU29-1|F1RU29_PIG Isoform 1 of Testis specific 10 interacting protein OS=Sus scrofa OX=9823 GN=TSGA10IP PE=4 SV=4 CANONICAL=F1RU29-1" }, "isoforms": [ { "isoform_ac": "F1RU29-1", "url": "https://www.uniprot.org/uniprotkb/F1RU29/entry", "sequence": { "sequence": "MGGQDTAMLNAHQPLVRTTSRRPGPDTRLQAPGTAAGLLQLLSRITQAEQGGLGSGDHKIRDQPQRSQSAGQTTKKDRRLRGRNKKSQGSAEAEDLLHSPRKPSFPFQWAWESFTEDGQALLQPGSASAPGHQGLPSPPGVTRPRARHSSAASLPEAHDFCWKTEVPSLEKRQQPGACSGLLGPPGKGAGQAREPPGECGSEWALESEEAAELEGPGAEEAKRGLSPGELPQLLRRGAILEEEQFAEEAEEGEPRTPPRRRAGSRRKGQNSGEETSDEHQLQCQAGSPSTNSLRGPQRRKPRAQEPEGLQDLERLRRQWQQELDCGEKQPWKALRTAVQASSWSGKAHTLRDDETFLFANFPNRTFHKRQEATRSLLQAWERQQLEELQQAELRRAREQRVQQQVARCLAAYAPRGSRGPGAAQRKLEELRRQERQRFAEYQAELQGIQHRVQARPYLFQQAMQVNARLTVTRRFSQVLSELGLDEEQLLAEAGKGDREGAPRKPRSHRSVGARMQDSSQSPTKTGSTGSQPDKHSNSSSDQESGV", "length": 546, "header": "tr|F1RU29-1|F1RU29_PIG Isoform 1 of Testis specific 10 interacting protein OS=Sus scrofa OX=9823 GN=TSGA10IP PE=4 SV=4 CANONICAL=F1RU29-1" }, "locus": { "chromosome": "2", "start_pos": 6387718, "end_pos": 6374659, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014171.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014171.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013785.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013785.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RU29", "url": "https://www.uniprot.org/uniprotkb/F1RU29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A494BAR6-1", "protein_name": "Testis specific 10 interacting protein", "gene_name": "Tsga10ip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMAERAVPELAGRGGRGQHANMLNTDQLLVRALSERPRQSTEPLVPGTSTGLFRLLSSISPEDQRCLGSGDSLQSQSCQLQRSYSAGQTTKKERKARRRNKKGRGSAEAEDLFSPPSRKPSFPFQWAWESFIIDGQALFQSSSSMAMGHRPLLLPPAAPQCKSRHKSVANLSEDLRACHKMEEQSVGRRHHLGGWANFPLPLSKVESQGLDQPSFWLSGKGSGSESEDVLEIEGQNSEEAEKSLSSGELPQLPGQSLILEEELISEAMEEEHSDPHKGKGSSVNKGGNSGEKGSEEGELQSHNQGSSSSFNSLRKPQKGISRAKDLKGPWDLERLHRQLQEELECGPQKQTWKALRAAVQASARNKKTPILGDDESFLSANFPNRTFHKRQEATRNLLRAWEQQQVKERQQAEVRRAREQQVQQQVARCLAAYTSGGNRGTLAPQRKLEELRRKERQRFAEYQAELQGIQHRVQARPFLFQQAMQTNARLTANRRFSQVLSALGVDEDQLLAEAGNAESTPRKHRSNRSLRAEMEPSSQSPPKTEPTSSQPGRRPSPTLDPDYSPREKN", "length": 570 }, "evidence": [ { "id": "F1RU29", "url": "https://omabrowser.org/oma/group/F1RU29/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5D7I0-1", "protein_name": "Testis-specific protein 10-interacting protein", "gene_name": "TSGA10IP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGQETNMLNAHQQLVRTSSGRPGHDKRQQTPGTATGLLKLLSSTPYAEQRSLGSGDGVIHAQKQRSRSAGQTPKKDRRLRGRNKKGQSSAEAEDVVPSSPRKPSFPFQWAWESFTTDGRALHQPSSVLAPGHQALPLPLAVHHHKSRRKSTPALPEAHSFCWKTEEPNLERRQQLRACSCTSIPPGRGTSQELEPSGEGGLQSPRKSSGSGLEPEESEPEGLGAEEAERGLIPGELPQLPRRGLILEEEQFSEATEEAEDGEHRAPWRRRTSSRRKGRNSGEEAWEESEVRRLESVSSSTNLREPQRRKPRAKELEGPWDLEKLQRKLQQELDCGPEKQPWKSLRAAVQASNWSRKAHPLGDDETFLFANFPNRTFHKRQEATRNLLRAWELQQREEQQQAEVRRAREQRVQHQVARCLAAYAPRGSRGPGAAQRKLEELRRQERQRFVEYQAELQGIQHRVQARPYLFQQAMQANARLNVTRRFSQVLSALGLDEEQLLAKAGKRDMEGAPRRHRSHRSVGARMEPSSQSPPKMEPTGSQADQHFAPNPDQELSP", "length": 556 }, "evidence": [ { "id": "F1RU29", "url": "https://omabrowser.org/oma/group/F1RU29/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3SY00-1", "protein_name": "Testis-specific protein 10-interacting protein", "gene_name": "TSGA10IP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQDTDMLNTYQQLVRTPSVRPGQDVRLQAPGTRTGLLKLLSTVSQDKQGCLGSGDGVPNQDLQQRSQSSRQTAKKDRKPRGQSKKGQGSEESEDHFPLLPRKPSFPFQWAWESIATDVRAVLQPSSPTPGHQALPMPSSFSQRQSRRKSTANLPEAHGCCWKTEAQNLKARQQLGAWGGVSIPTGKGELGSEPPSGLQLPGRRPGSGSASDKQVQLQSLGAEEAERGLSSGVLPQRPRRGSISEEEQFSEATEEAEEGEHRTPCRRRAGCQRKGQISGEEASDEGEVQGQSQGSSPSFNNLRRRQWRKTRAKELQGPWDLEKLHRQLQRDLDCGPQKLPWKTLRAAFQASKRNGKAYASGYDETFVSANLPNRTFHKRQEATRSLLQAWERQRQEERQQAELRRARTQHVQRQVAHCLAAYAPRGSRGPGAAQRKLEELRRQERQRFAEYQAELQGIQHRVQARPFLFQQAMQANARLTVTRRFSQVLSALGLDEEQLLSEAGKVDREGTPRKPRSHRSMGVRMEHSPQRPPRTEPTGSQPDRHYNPSLDPECSP", "length": 556 }, "evidence": [ { "id": "F1RU29", "url": "https://omabrowser.org/oma/group/F1RU29/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q66MI6-1", "protein_name": "Testis-specific protein 10-interacting protein", "gene_name": "Tsga10ip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLNTDQLLVRAISERPRKSTEPLVPGTPTGLFSLLSNISPEEQGRLGSGDSLQSQSCQQQRSYSAGQTTKKERKPRRRNKKGRGSAEAEDLFSSPRKPSFPFQWAWESFIIDGQALLQSGSSVAVGHRSLLFPPAAPQCKTRHKSVANLSEDLRACHKSEVQNLGRRYQPGAWANLSLPLGKAESQGLERPTFWSTGKGSGSECEDVSEVEGQNADEAEKSLSTGELPQLPGQGLTLEEELISEVMEEEEHNRRKGSSVNKGRNSGEKGSEEGELQSHNQGSSSNSNSLRKSPKGTSGAKEFKGPWDLERLHRQLQEELESGPQKQTWKALRAAVQASARNRKTPVTGEEESFLTANFPNRTFHKRQEATRNLLQAWEQQQLKEKQQAEMRRAREQQVQQQVARCLAAYTPGGNRGTLGPQRKLEELRRKERQRFAEYQAELQGIQHRVQARPFLFQQAMQTNARLTANRRFSQVLSALGVDEEQLLAEAGNAEGIPRKHRSYRSFGVEMESSPQSPPKTEPTSSQPGRHPSPTLD", "length": 536 }, "evidence": [ { "id": "F1RU29", "url": "https://omabrowser.org/oma/group/F1RU29/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RU29", "url": "https://www.uniprot.org/uniprotkb/F1RU29" } ], "pmid": "" }, { "name": "photoreceptor connecting cilium", "id": "GO:0032391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032391", "evidence": [ { "database": "UniProtKB", "id": "F1RU29", "url": "https://www.uniprot.org/uniprotkb/F1RU29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cilium organization", "id": "GO:0044782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044782", "evidence": [ { "database": "UniProtKB", "id": "F1RU29", "url": "https://www.uniprot.org/uniprotkb/F1RU29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RU29-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 546, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RU29-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RU29" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 363, "end_pos": 365 }, { "start_pos": 537, "end_pos": 539 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RU42-1", "uniprot_ac": "F1RU42", "uniprot_id": "F1RU42_PIG", "mass": { "chemical_mass": 51210.0, "monoisotopic_mass": 51210.0 }, "refseq": { "ac": "XP_003122547", "name": "transmembrane protein 151A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122547" }, "gene_names": [ { "name": "TMEM151A", "type": "recommended", "evidence": [ { "id": "F1RU42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU42" } ] }, { "name": "TMEM151A", "type": "synonym", "evidence": [ { "id": "XP_003122547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122547" } ] } ], "protein_names": [ { "name": "Transmembrane protein 151A", "type": "synonym", "evidence": [ { "id": "F1RU42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU42/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 151A", "type": "synonym", "evidence": [ { "id": "XP_003122547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122547" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU42", "url": "https://www.uniprot.org/uniprotkb/F1RU42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM151A", "url": "https://www.uniprot.org/uniprotkb/F1RU42", "locus": { "chromosome": "2", "start_pos": 6090543, "end_pos": 6095352, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012952", "url": "https://www.ensembl.org/id/ENSSSCG00000012952" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012952", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012952", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520884", "url": "https://www.ncbi.nlm.nih.gov/gene/100520884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520884", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520884", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IHSCGAV", "url": "https://omabrowser.org/oma/group/IHSCGAV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RU42", "url": "https://www.orthodb.org/?gene=F1RU42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31893", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31893", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31893:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31893:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122547", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RU42", "url": "https://www.uniprot.org/uniprotkb/F1RU42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU42-1", "url": "https://www.uniprot.org/uniprotkb/F1RU42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEGGGGDGGEVPALIPDGETLREEQRPLKQSLGSSLCRESHWKCLLLTLLIHACGAVVAWCRLATVPRLVLGPEAALARGAGGPPPTYPASPCSDGYLYIPLAFVSLLYLLYLAECWHCHVRSCQAPRTDAHTVLALIRRLQQAPPCVWWKATSYHYVRRTRQITRYRNGDAYTTTQVYHERADSRTARGEFDYSAHGVRDVSKELVGLADHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDVDFRESLMVFADPRSPPWYARAWVFWLVSAATLSWPLRVVAAYGTAHVHYQVEKLFGASSPPPGAVPSAPPLSRVATVDFTELEWHICSNRQLVPSYSEAVVMGAGSGAYLRGCQRCRRSVSSNSLPPARPSGPRLPFSRSRLSLGAGGRATPGVFRSLSGGPLGRRGEDTEPLESPPCYEDALYFPVLIVHGDSGCQGDGQGAL", "length": 468, "header": "tr|F1RU42-1|F1RU42_PIG Isoform 1 of Transmembrane protein 151A OS=Sus scrofa OX=9823 GN=TMEM151A PE=3 SV=1 CANONICAL=F1RU42-1" }, "isoforms": [ { "isoform_ac": "F1RU42-1", "url": "https://www.uniprot.org/uniprotkb/F1RU42/entry", "sequence": { "sequence": "MPEGGGGDGGEVPALIPDGETLREEQRPLKQSLGSSLCRESHWKCLLLTLLIHACGAVVAWCRLATVPRLVLGPEAALARGAGGPPPTYPASPCSDGYLYIPLAFVSLLYLLYLAECWHCHVRSCQAPRTDAHTVLALIRRLQQAPPCVWWKATSYHYVRRTRQITRYRNGDAYTTTQVYHERADSRTARGEFDYSAHGVRDVSKELVGLADHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDVDFRESLMVFADPRSPPWYARAWVFWLVSAATLSWPLRVVAAYGTAHVHYQVEKLFGASSPPPGAVPSAPPLSRVATVDFTELEWHICSNRQLVPSYSEAVVMGAGSGAYLRGCQRCRRSVSSNSLPPARPSGPRLPFSRSRLSLGAGGRATPGVFRSLSGGPLGRRGEDTEPLESPPCYEDALYFPVLIVHGDSGCQGDGQGAL", "length": 468, "header": "tr|F1RU42-1|F1RU42_PIG Isoform 1 of Transmembrane protein 151A OS=Sus scrofa OX=9823 GN=TMEM151A PE=3 SV=1 CANONICAL=F1RU42-1" }, "locus": { "chromosome": "2", "start_pos": 6095330, "end_pos": 6091641, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014157.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014157.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013771.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013771.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 415, "start_aa": "Thr", "end_pos": 415, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr415", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RU42", "url": "https://www.uniprot.org/uniprotkb/F1RU42" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520884", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520884", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M1RF26-1", "protein_name": "Transmembrane protein 151B", "gene_name": "LOC793560", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MQEATADGEEPILDGAAREEQRPVKQSLAASLCRESHWKCLLLTLLMFGCFGTLAWCKLCKVPVLAPTEPEAAVEESGHLSTTSASSDVFTPLEGDLDSPCSSGYIYIPLAFLAMLYVVYLVECWHCYSKTAMLAQAEVAEVYERVQRLQQATPCIWWKAISYHYVRRTRQVTRYRNGDAYTTTQVYHERVNTHAASSEFDYARYGVKDVSKELRGLMDHPAVRLRFTKCFSFASARAEAAYLTQRARFFGENEGLDDYMEAREGMHLKNVDFREHILAFPDPARQPWYARRKVFWLASALLLSWPLRVVAEYRTAYVHYHVEKLFGDADDNNRGDVTENGGSTENGNGPGTGSSYRAISRVNTVDMTELEWHIRCNQQMVPSYSEALLMDPGSGTNQGTNTPPAGQGANSTASGPTLPVAFTSAYLLQNCPRCRRTTSSASLPSRLRGPTAALLSGTMAGMRASGSGGGAGGPGRLVLSRSGFSLGRLQAPRPPSLFHSRSVGGGLAARGEDSGGGGGGFLGLGSRQDEESRRVLEGEGDEEEEAVNVVEREEEGEREGEQREQQEDAEEEEAREGDRPPTYQDAFFFPVLIVHGEESCHSGEDIS", "length": 607 }, "evidence": [ { "id": "F1RU42", "url": "https://omabrowser.org/oma/group/F1RU42/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A4IFG4-1", "protein_name": "Transmembrane protein 151B", "gene_name": "TMEM151B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPEDGGGDSGDVPEIIPDGEPLREEQRPLKQSLGSSLCRESHWKCLLLTLLIHACGAVVAWCRLATVPRLVLGPEAALARGGGGPPPTYPASPCSDGYLYIPLAFVSLLYLLYLAECWHCHVRSCQAPRTDASTVLALIRRLQQAPPCVWWKATSYHYVRRTRQITRYRNGDAYTTTQVYHERADSRTARGEFDYSAHGVRDVSKELVGLADHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDVDFRESLMVFADPRSPPWYARAWVFWLVSAATLSWPLRVVAAYGTAHVHYQVEKLFGASSPPPGAVPSGPPLSRVATVDFTELEWHICSNRQLVPSYSEAVVMGAGSGAYLRGCQRCRRSVSSNSLPPARPSGPRLPFSRSRLSLGAGGRATPGVFRSLSGGPLGRRGEDTEPLESPPCYEDALYFPVLIVHGDSGCQGDGQGAL", "length": 468 }, "evidence": [ { "id": "F1RU42", "url": "https://omabrowser.org/oma/group/F1RU42/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0RAG0-1", "protein_name": "Transmembrane protein 151A", "gene_name": "Tmem151a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQGKPIPPPPDLVNLTQHFFIPISQIKRLSLWLEHAGQKSCRLEFLWLQPTGLKSPADETVFPFWVLTVNKQSVWGEVWVGLALGPSPREEPGGRPHTMALFITQLGRLERRRARTRPRSQARAQLEKPGVRRPRLGFPQARGWRWGVPAVPGAASGATGAAGAGSAEGGAPGTAAANAAALGLGSVHSSAAAEPSGRPSGPRRSPPRPCLSCPGPGPGSRSSQDTMPEGEGGDCGEVPALVPDGEPLREEQRPLKQSLGGSLCRESHWKCLLLTLLIHACGAVVAWCRLATVPRLVLGPEAALARGAGGPPPTYPASPCSDGYLYIPLAFVSLLYLLYLAECWHCHVRSCQAPRTDANTVLALIHRLQQAPPCVWWKATSYHYVRRTRQITRYRNGDAYTTTQVYHERADSRTARGEFDYSAHGVRDVSKELVGLADHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDVDFRESLMVFADPRSPPWYARAWVFWLVSAATLSWPLRVVAAYGTAHVHYQVEKLFGASSPPPGAVPNGPPLSRVATVDFTELEWHICSNRQLVPSYSEAVVMGAGSGAYLRGCQRCRRSVSSNSLPPARPSGPRLPFSRSRLSLGAGGRTTPGVFRSLSGGPLGRRGEDTEPLESPPCYEDALYFPVLIVHGDSGCRGDGQGAL", "length": 694 }, "evidence": [ { "id": "F1RU42", "url": "https://omabrowser.org/oma/group/F1RU42/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6GQT5-1", "protein_name": "Transmembrane protein 151A", "gene_name": "Tmem151a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPEGEGGDCGEVPALVPDGEPLREEQRPLKQSLGGSLCRESHWKCLLLTLLIHACGAVVAWCRLATVPRLVLGPEAALARGAGGPPPTYPASPCSDGYLYIPLAFVSLLYLLYLAECWHCHVRSCQAPRTDANTVLALIHRLQQAPPCVWWKATSYHYVRRTRQITRYRNGDAYTTTQVYHERADSRTARGEFDYSAHGVRDVSKELVGLADHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDVDFRESLMVFADPRSPPWYARAWVFWLVSAATLSWPLRVVAAYGTAHVHYQVEKLFGASSPPPGAVPSGPPLSRVATVDFTELEWHICSNRQLVPSYSEAVVMGASSGAYLRGCQRCRRSVSSNSLPPARPSGPRLPFSRSRLSLGAGGRTTPGVFRSLSGGPLGRRGEDTEPLESPPCYEDALYFPVLIVHGDSGCRGDGQGAL", "length": 468 }, "evidence": [ { "id": "F1RU42", "url": "https://omabrowser.org/oma/group/F1RU42/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N4L1-1", "protein_name": "Transmembrane protein 151A", "gene_name": "TMEM151A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPEDGAGDGGEVPALIPDGEPLREEQRPLKQSLGSSLCRESHWKCLLLTLLIHACGAVVAWCRLATVPRLVLGPEAALARGAGGPPPTYPASPCSDGYLYIPLAFVSLLYLLYLAECWHCHVRSCQAPRTDAHTVLALIRRLQQAPPCVWWKATSYHYVRRTRQITRYRNGDAYTTTQVYHERADSRTARGEFDYSAHGVRDVSKELVGLAEHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDVDFRESLMVFADPRSPPWYARAWVFWLVSAATLSWPLRVVAAYGTAHVHYQVEKLFGASSPPPGAVPSGPPLSRVATVDFTELEWHICSNRQLVPSYSEAVVMGAGSGAYLRGCQRCRRSVSSNSLPPARPSGPRLPFSRSRLSLGAGGRATPGVFRSLSGGPLGRRGEDTEPLESPPCYEDALYFPVLIVHGDSGCQGDGQGAL", "length": 468 }, "evidence": [ { "id": "F1RU42", "url": "https://omabrowser.org/oma/group/F1RU42/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1RU42", "url": "https://www.uniprot.org/uniprotkb/F1RU42" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RU42", "url": "https://www.uniprot.org/uniprotkb/F1RU42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 415 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RU47-1", "uniprot_ac": "F1RU47", "uniprot_id": "F1RU47_PIG", "mass": { "chemical_mass": 15139.0, "monoisotopic_mass": 15139.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1RU47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU47/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU47", "url": "https://www.uniprot.org/uniprotkb/F1RU47" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RU47", "locus": {} } ], "crossref": [ { "id": "F1RU47", "url": "https://alphafold.ebi.ac.uk/entry/F1RU47", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012950", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012950", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "F1RU47", "url": "https://www.uniprot.org/uniprotkb/F1RU47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RU47-1", "url": "https://www.uniprot.org/uniprotkb/F1RU47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METTGEPGAGLLGTPNPTSFAPGHLERGKPSWCGNLTLASAKPCACGCLKPVAPPSFPATASKKALGASLWRAQSWCSRTWSSSSVPTATPGTFFSSRSSSPEPSTWQPPTRNWKPSPIWASSSGAPPSTPRLHRAQPRAHCCPG", "length": 145, "header": "tr|F1RU47-1|F1RU47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1RU47-1" }, "isoforms": [ { "isoform_ac": "F1RU47-1", "url": "https://www.uniprot.org/uniprotkb/F1RU47/entry", "sequence": { "sequence": "METTGEPGAGLLGTPNPTSFAPGHLERGKPSWCGNLTLASAKPCACGCLKPVAPPSFPATASKKALGASLWRAQSWCSRTWSSSSVPTATPGTFFSSRSSSPEPSTWQPPTRNWKPSPIWASSSGAPPSTPRLHRAQPRAHCCPG", "length": 145, "header": "tr|F1RU47-1|F1RU47_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1RU47-1" }, "locus": { "chromosome": "2", "start_pos": 6055946, "end_pos": 6054681, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014155.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014155.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013769.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013769.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 90, "start_aa": "Thr", "end_pos": 90, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr90", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RU47", "url": "https://www.uniprot.org/uniprotkb/F1RU47" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RU47-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 145, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RU47-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RU47" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 90 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RU77-1", "uniprot_ac": "F1RU77", "uniprot_id": "F1RU77_PIG", "mass": { "chemical_mass": 235579.0, "monoisotopic_mass": 235579.0 }, "refseq": {}, "gene_names": [ { "name": "DOCK11", "type": "recommended", "evidence": [ { "id": "F1RU77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU77" } ] } ], "protein_names": [ { "name": "Dedicator of cytokinesis 11", "type": "synonym", "evidence": [ { "id": "F1RU77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RU77/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RU77", "url": "https://www.uniprot.org/uniprotkb/F1RU77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DOCK11", "url": "https://www.uniprot.org/uniprotkb/F1RU77", "locus": { "chromosome": "X", "start_pos": 97267517, "end_pos": 97068355, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012634", "url": "https://www.ensembl.org/id/ENSSSCG00000012634" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012634", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012634", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08697", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08697", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11700", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11700", "database": "CDD", 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"MLSESSSFLKGVMLGSIFCALITTLGHIRIFHGNRMHHHEHHHLQAPNKEDILKISEDERMELSKSFQVYCIILVKPKDVSLWAAVKETWTKHCDQAEFFSSENVKVFESINMETNDMWLMMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTVKSGDLEYVSVEGGIVLSIESMKRLNSLLDIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDAEGKDVFNTKSVGLFIKEAMTNHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHIFSDALIFLPPNGSDND", "length": 318, "header": "tr|F1RUC2-1|F1RUC2_PIG Isoform 1 of C1GALT1-specific chaperone 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1RUC2-1" }, "isoforms": [ { "isoform_ac": "F1RUC2-1", "url": "https://www.uniprot.org/uniprotkb/F1RUC2/entry", "sequence": { "sequence": "MLSESSSFLKGVMLGSIFCALITTLGHIRIFHGNRMHHHEHHHLQAPNKEDILKISEDERMELSKSFQVYCIILVKPKDVSLWAAVKETWTKHCDQAEFFSSENVKVFESINMETNDMWLMMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTVKSGDLEYVSVEGGIVLSIESMKRLNSLLDIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDAEGKDVFNTKSVGLFIKEAMTNHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHIFSDALIFLPPNGSDND", "length": 318, "header": "tr|F1RUC2-1|F1RUC2_PIG Isoform 1 of C1GALT1-specific chaperone 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1RUC2-1" }, "locus": { "chromosome": "X", "start_pos": 98756037, "end_pos": 98755084, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013781.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013781.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013400.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013400.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RUC2", "url": "https://www.uniprot.org/uniprotkb/F1RUC2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511613", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511613", "resource": "KEGG Pathway" }, { "id": "R-SSC-913709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "resource": "Reactome", "description": "O-linked glycosylation of mucins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7K2E2-1", "protein_name": "C1GALT1-specific chaperone 1", "gene_name": "C1galt1c1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEIEYLFNLKSFVMARGKMLSESSSFLKGVMLGSIFYALITTLGHIRIGHRNRTHHHEHHHLQAPNKEDISKISAAERMELSKSFRVYCIVLVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINVDTDDMWLMMRKAYKYAFDKYKEQYNWFFLARPSTFAVIENLKYFLLKKDPSQPFYLGHTVKSGDLEYVSVDGGIVLSIESMKRLNSLLSVPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDADRKDVFNTKSVGLFIKEAMSNHPNQVVEGCCSNMAVTFNGLTPNQMHVMMYGVYRLRAFGHVFNDALVFLPPNGSDND", "length": 336 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BSH4-1", "protein_name": "C1GALT1 specific chaperone 1", "gene_name": "C1GALT1C1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLSESSSFMKGVLLGGIFCVVVTLLGHVKIGHGTRAHHHEHHHIQAPNKEEVLNLSEDEQLELSQSIRVYCIVLVKPKDIGHWAAVKETWSKHCDKAEFYSSEDVKVFNAVVLNTNDMWTMMRKAYKITYERYKDEFNWFFLAYPTTFAIIENLKYFLLKKDPAQPFYIGHTMKSGDLEYVDGEGGIVLSIESLRRLSHVFEDSDKCPEQGGMIWKLSEDKQLAVCLKYTGVIAENAEDSEGKDVFNTKSVNALIKEAMASRPEQVVDGCCSDMAITFNGLSPNHMHVMMYGVYRLRPYGHTYSDALVFLPPAGSDND", "length": 318 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7FBK8-1", "protein_name": "C1GALT1-specific chaperone 1", "gene_name": "c1galt1c1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSEGSSFMKGMIFGGIFCLIMSFFETFNPGTHSEGHNHLHHHLKPVSKDELQKLSESQMSEFAMQVRVYCLIMVTPKLLVHWATANDTWSKHCDKSVFYTSEASKALDAVDLQEQDEWTRLRKAIQHAYENAGDLHWFFIARPTTFAIIENLKYLVLDKDPSQPFYIGHTEKSGELDYVEYDSGIVLSYEAMRRLMEVFKDEDKCPERGRALWKMSEEKQLATCLKYSGVFAENGEDAQGKGLFNKKSVSSLISDSISQNPGDVVEACCSDMAITFAGMSPSQIQVLMYGVYRLRPYGHDFHDSLTFLPPKDSDND", "length": 317 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3SX46-1", "protein_name": "C1GALT1-specific chaperone 1", "gene_name": "C1GALT1C1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSESSSFLKGVMLGSIFCALITMLGHIRIGHGSRMHHHEHHHLQAPNKEDILKISEDERMELSKSFRVYCILLVRPKDVSLWAAVKETWTNHCDKVDFFSSENVKVFESINMETNDMWLMMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTVKSGDLEYVSMEGGIVLSIESMKRLNSLLSIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDSEGKDIFNTKSVGLFIKEAMTNHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHVFNDALVFLPPNGSDND", "length": 318 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q499P3-1", "protein_name": "C1GALT1-specific chaperone 1", "gene_name": "C1galt1c1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSESSSFLKGVMLGSIFCALITMLGHIRIGNRMHHHEHHHLQAPNKDDILKISETERMELSKSFQVYCIVLVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWLMMRKAYKYAYDKYKDQYNWFFLARPTTFAVIENLKYFLLRKDPSQPFYLGHTVKSGDLEYVSVDGGIVLSIESMKRLNGLLSVPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDADGKDVFNTKSVGLFIKEAMTNQPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHVFNDALVFLPPNGSEND", "length": 316 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96EU7-1", "protein_name": "C1GALT1-specific chaperone 1", "gene_name": "C1GALT1C1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSESSSFLKGVMLGSIFCALITMLGHIRIGHGNRMHHHEHHHLQAPNKEDILKISEDERMELSKSFRVYCIILVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWLMMRKAYKYAFDKYRDQYNWFFLARPTTFAIIENLKYFLLKKDPSQPFYLGHTIKSGDLEYVGMEGGIVLSVESMKRLNSLLNIPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDADGKDVFNTKSVGLSIKEAMTYHPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHIFNDALVFLPPNGSDND", "length": 318 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JMG2-1", "protein_name": "C1GALT1-specific chaperone 1", "gene_name": "C1galt1c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSESSSFLKGVMLGSIFCALITMLGHIRIGNRMHHHEHHHLQAPNKDDISKISEAERMELSKSFRVYCIVLVKPKDVSLWAAVKETWTKHCDKAEFFSSENVKVFESINMDTNDMWLMMRKAYKYAYDQYRDQYNWFFLARPTTFAVIENLKYFLLKKDQSQPFYLGHTVKSGDLEYVSVDGGIVLSIESMKRLNSLLSVPEKCPEQGGMIWKISEDKQLAVCLKYAGVFAENAEDADGKDVFNTKSVGLFIKEAMTNQPNQVVEGCCSDMAVTFNGLTPNQMHVMMYGVYRLRAFGHVFNDALVFLPPNGSEND", "length": 316 }, "evidence": [ { "id": "F1RUC2", "url": "https://omabrowser.org/oma/group/F1RUC2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RUC2", "url": "https://www.uniprot.org/uniprotkb/F1RUC2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation", "id": "GO:0006493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006493", "evidence": [ { "database": "UniProtKB", "id": "F1RUC2", "url": "https://www.uniprot.org/uniprotkb/F1RUC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00027JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00032MO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00033MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00034MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00034UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00063MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00069YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00079IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00094SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00139WK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00164QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00196CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00238CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00241VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00287UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00318OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00372ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00376RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00394CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00423TL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00428HK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00430ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00464AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00467QU", "type": "O-linked", "subtype": "Core 1" }, { 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"subtype": "Core 1" }, { "glytoucan_ac": "G00897BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00907IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00932UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00944OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00952LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00967VH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00978GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00979XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00980BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01040ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01116MS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01155GN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01287FH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01302LF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01316HN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01357LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01362WX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01376HR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01450RG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01453BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01464ES", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01471GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01520KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01532FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01534TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01546PE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01577DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01584VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01608UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01614ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01625GQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01643LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01657UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01666SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01674VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01682LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01707KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01759NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01763RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01769GP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01802HL", "type": "O-linked", "subtype": 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"https://www.uniprot.org/uniprotkb/F1RUL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUL8-1", "url": "https://www.uniprot.org/uniprotkb/F1RUL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMMAHEASSWIFINERTFITREQLNSLLKTYNIFYRNQENLHILYGQTEDGKLIVEGLLDIFWGVKRPLQLKIQDEKQIPSFTALKSPDVFSKRGMTRWGEFDDLHRISDLDRTQIPVSEATNSQEDYLSYQCSTLKPHTDEEPESPLLYRTMSEAALVRKRMKPPMMDRKARQKHRASINGHIYNHETSIFTPAFGSETKVRINSDMRTEEVIKQILQKFKIENSAQDFALYIIFSTGEQRRLKKTDIPLLHRLLQGPSKKNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQRTIIKFRTEKAIILKYLQSKRVIKTETTV", "length": 337, "header": "tr|F1RUL8-1|F1RUL8_PIG Isoform 1 of Ras association domain family member 6 OS=Sus scrofa OX=9823 GN=RASSF6 PE=4 SV=3 CANONICAL=F1RUL8-1" }, "isoforms": [ { "isoform_ac": "F1RUL8-1", "url": "https://www.uniprot.org/uniprotkb/F1RUL8/entry", "sequence": { "sequence": "MTMMAHEASSWIFINERTFITREQLNSLLKTYNIFYRNQENLHILYGQTEDGKLIVEGLLDIFWGVKRPLQLKIQDEKQIPSFTALKSPDVFSKRGMTRWGEFDDLHRISDLDRTQIPVSEATNSQEDYLSYQCSTLKPHTDEEPESPLLYRTMSEAALVRKRMKPPMMDRKARQKHRASINGHIYNHETSIFTPAFGSETKVRINSDMRTEEVIKQILQKFKIENSAQDFALYIIFSTGEQRRLKKTDIPLLHRLLQGPSKKNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQRTIIKFRTEKAIILKYLQSKRVIKTETTV", "length": 337, "header": "tr|F1RUL8-1|F1RUL8_PIG Isoform 1 of Ras association domain family member 6 OS=Sus scrofa OX=9823 GN=RASSF6 PE=4 SV=3 CANONICAL=F1RUL8-1" }, "locus": { "chromosome": "8", "start_pos": 69818329, "end_pos": 69776254, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009806.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009806.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009553.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009553.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RUL8", "url": "https://www.uniprot.org/uniprotkb/F1RUL8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525351", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525351", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BV82-1", "protein_name": "Ras association domain family member 6", "gene_name": "RASSF6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKKATMKAHHLPSFAINEEKFITREQLHSLLKTYNSYYSDQENLQLSYDQREGGKPFIEGILSIFWGVRHPIRLQIQDEKQIPSFVTLKSTENVGLFPSKRGMTRWGEFDDLHHISGETLKSTEEKLNSEKSYSYYESSTLKSKSEQEHDCATLPRAVSSTAAVRKRTKFSMIARTEVETHRFSINGHFYNYETSVFTPASGSETKIRINSHMRTREVIEQLLRKFKIENSPHDFALYIIHVSGEKKQLRSGDIPLLHRLLQGPSEEAAKFFLMDRDVEEVSSDVAQYIQFHLPFLESILQRIKEEEEQEIQQTIAKYFKEKHAICQHLQNRTFKKTETTV", "length": 341 }, "evidence": [ { "id": "F1RUL8", "url": "https://omabrowser.org/oma/group/F1RUL8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MDS2-1", "protein_name": "Ras association domain family member 6", "gene_name": "RASSF6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMAHQFSSWIFINERTFITGEQLNSLLKTYNFFYRNQKNLHILYGQTEDGKLIVEGTLDIFWGVKRPIQLKIQDEKQIPSFSVLESPEAFSKRGMTRWGQFDDLYRISDLDRDQIPVTGGTGSQEDYLSYHSSTLKPHANEEPESPLLYRTMSEATLVRKRMTPLTMDRKDRQKHRASINGHFYNHETSIFTPVFGSETKVRVNSNMRTEEVIKQILQKFKIENSAQDFALYIIFATGEQKRLKKTDIPLLHRLLQGPSKTNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQRTVAKFSTEKAIILKYLQSKRVIKTETTV", "length": 335 }, "evidence": [ { "id": "F1RUL8", "url": "https://omabrowser.org/oma/group/F1RUL8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4QR82-1", "protein_name": "Ras association domain-containing protein 6", "gene_name": "Rassf6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTMDHRFPSRIFVNERTSITREQLNSLLETYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFWGVKRPIQLKIQDEKQISSFDLLKSPETFSSKGRMTRWGEFDDLYRISEMDKTQALAPEARHTPEDYLSCYSVLKQCADEEPESPLLYRTVSEAALVRKRMRAPEMYRKDRMGTLAKHRASINGHVYDHETSIFTPTFGSETKVRANSIMKTEEVIKQLLQKFKIENSPRDFALYIIFGTGEKRKLKKTDVPLLQRLIQGPSKSNARIFLMDKDAEEISSDVAPYINFHFSFLKSILQRLDEEEKMEIERIMAKFNTERAFILKCLQSKRAAKTETTV", "length": 341 }, "evidence": [ { "id": "F1RUL8", "url": "https://omabrowser.org/oma/group/F1RUL8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ZTQ3-1", "protein_name": "Ras association domain-containing protein 6", "gene_name": "RASSF6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLWEETGAAPAPARASDLPYRISSDHLKKEEKMTMMAHQYPSWIFINEKTFITREQLNSLLKTYNIFYENQKNLHILYGETEDGKLIVEGMLDIFWGVKRPIQLKIQDEKPFSSFTSMKSSDVFSSKGMTRWGEFDDLYRISELDRTQIPMSEKRNSQEDYLSYHSNTLKPHAKDEPDSPVLYRTMSEAALVRKRMKPLMMDRKERQKNRASINGHFYNHETSIFIPAFESETKVRVNSNMRTEEVIKQLLQKFKIENSPQDFALHIIFATGEQRRLKKTDIPLLQRLLQGPSEKNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQRIVTKFNKEKAIILKCLQNKLVIKTETTV", "length": 369 }, "evidence": [ { "id": "F1RUL8", "url": "https://omabrowser.org/oma/group/F1RUL8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80UQ2-1", "protein_name": "Ras association domain-containing protein 6", "gene_name": "Rassf6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTAMDHQFPSWIVVNESTSISREQLNYLLETYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFWGVKRPIQLKIQDEKQISSFDLLNTPETFSSKGRMTRWGEFDDLYRISELDRTHVLASEARHSPEDYLSYHSTLTPYADEEPESPLLYRTMSEAALVRKRMRAPEMYRKDRMGVLSNHRASINGHVYDHETSIFTPTFGSETKVRANSIMRTEEVIKQLLQKFKIENSPRDFALYIIFGTGEQRKLKKTDVPLLQRLLQGPSKSNARIFLMDKDAEEISRDVAPYINFHFSFLESILQRLDEEEKMEIERIMAKFNTERAFILKCLQSKQAAKTETTV", "length": 341 }, "evidence": [ { "id": "F1RUL8", "url": "https://omabrowser.org/oma/group/F1RUL8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1RUL8", "url": "https://www.uniprot.org/uniprotkb/F1RUL8" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "F1RUL8", "url": "https://www.uniprot.org/uniprotkb/F1RUL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RUL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUL8" }, { "id": "PS50200", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50200" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-associating", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 274, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RUL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUL8" }, { "id": "PS50951", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50951" } ], "ann_type": "Domain_Extent_Annotation", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RUP0-1", "uniprot_ac": "F1RUP0", "uniprot_id": "F1RUP0_PIG", "mass": { "chemical_mass": 24518.0, "monoisotopic_mass": 24518.0 }, "refseq": {}, "gene_names": [ { "name": "ECHDC3", "type": "recommended", "evidence": [ { "id": "F1RUP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUP0" } ] } ], "protein_names": [ { "name": "Enoyl-CoA hydratase domain-containing protein 3, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1RUP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUP0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in fatty acid biosynthesis and insulin sensitivity.", "evidence": [ { "database": "UniProtKB", "id": "F1RUP0", "url": "https://www.uniprot.org/uniprotkb/F1RUP0#function" }, { "database": "UniProtKB", "id": "ARBA00037410", "url": "https://www.uniprot.org/uniprotkb/ARBA00037410#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RUP0", "url": "https://www.uniprot.org/uniprotkb/F1RUP0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ECHDC3", "url": "https://www.uniprot.org/uniprotkb/F1RUP0", "locus": { "chromosome": "10", "start_pos": 60117433, "end_pos": 60138588, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011119", "url": "https://www.ensembl.org/id/ENSSSCG00000011119" } ] } } ], "crossref": [ { "id": "F1RUP0", "url": "https://alphafold.ebi.ac.uk/entry/F1RUP0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011119", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011119", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06558", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06558", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43602", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43602", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43602:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43602:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00378", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00378", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RUP0", "url": "https://www.uniprot.org/uniprotkb/F1RUP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUP0-1", "url": "https://www.uniprot.org/uniprotkb/F1RUP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKSLQSDLLHDAESRDLKVIVISAEGPVFSSGHDLKELTAEQGPDYHAEVFRACSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVTIGLFCSTPGVAVGRALPRKVALEMLFTGEPMSAQEALLHGLLSRVVPEERLEEETMRIARKVASLSRPVLSLGKAAFYRQLAQDLRTAYHLASQTMVDNLGLPDAQEGIQAFLQKRDPVWSH", "length": 227, "header": "tr|F1RUP0-1|F1RUP0_PIG Isoform 1 of Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Sus scrofa OX=9823 GN=ECHDC3 PE=3 SV=3 CANONICAL=F1RUP0-1" }, "isoforms": [ { "isoform_ac": "F1RUP0-1", "url": "https://www.uniprot.org/uniprotkb/F1RUP0/entry", "sequence": { "sequence": "MLKSLQSDLLHDAESRDLKVIVISAEGPVFSSGHDLKELTAEQGPDYHAEVFRACSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVTIGLFCSTPGVAVGRALPRKVALEMLFTGEPMSAQEALLHGLLSRVVPEERLEEETMRIARKVASLSRPVLSLGKAAFYRQLAQDLRTAYHLASQTMVDNLGLPDAQEGIQAFLQKRDPVWSH", "length": 227, "header": "tr|F1RUP0-1|F1RUP0_PIG Isoform 1 of Enoyl-CoA hydratase 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUT1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM4", "url": "https://www.uniprot.org/uniprotkb/F1RUT1", "locus": { "chromosome": "2", "start_pos": 5776539, "end_pos": 5784337, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058325", "url": "https://www.ensembl.org/id/ENSSSCG00000058325" } ] } } ], "crossref": [ { "id": "ENSSSCG00000038008", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038008", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12606", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12606", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12607", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12607", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100144417", "url": "https://www.ncbi.nlm.nih.gov/gene/100144417", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PECAYER", "url": "https://omabrowser.org/oma/group/PECAYER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RUT1", "url": "https://www.orthodb.org/?gene=F1RUT1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48025", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48025", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48025:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48025:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1TGW5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TGW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIS0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUT1-1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASAYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRARYSAF", "length": 365, "header": "tr|F1RUT1-1|F1RUT1_PIG Isoform 1 of RNA binding motif protein 4 OS=Sus scrofa OX=9823 GN=RBM4 PE=1 SV=3 CANONICAL=F1RUT1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TGW5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TGW5/entry", "sequence": { "sequence": "MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGGMCVG", "length": 143, "header": "tr|A0A4X1TGW5-1|A0A4X1TGW5_PIG Computationally mapped isoform of RNA binding motif protein 4 OS=Sus scrofa OX=9823 GN=RBM4 PE=4 SV=1 CANONICAL=F1RUT1-1" }, "locus": { "chromosome": "2", "start_pos": 5783180, "end_pos": 5776929, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062687.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062687.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046603.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046603.2" } ] } }, { "isoform_ac": "A0A8W4FIS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIS0/entry", "sequence": { "sequence": "SLLPREAVSEMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASAYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRARYSAF", "length": 375, "header": "tr|A0A8W4FIS0-1|A0A8W4FIS0_PIG Computationally mapped isoform of RNA binding motif protein 4 OS=Sus scrofa OX=9823 GN=RBM4 PE=1 SV=1 CANONICAL=F1RUT1-1" }, "locus": { "chromosome": "2", "start_pos": 5783679, "end_pos": 5778812, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102128.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102128.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078208.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078208.1" } ] } }, { "isoform_ac": "F1RUT1-1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1/entry", "sequence": { "sequence": "MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADFTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASAYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRARYSAF", "length": 365, "header": "tr|F1RUT1-1|F1RUT1_PIG Isoform 1 of RNA binding motif protein 4 OS=Sus scrofa OX=9823 GN=RBM4 PE=1 SV=3 CANONICAL=F1RUT1-1" }, "locus": { "chromosome": "2", "start_pos": 5783180, "end_pos": 5778812, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059106.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059106.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052650.1", "url": "https://www.ensembl.org/id/ENSSSCP00000052650.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 298, "start_aa": "Thr", "end_pos": 298, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr298", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 321, "start_aa": "Thr", "end_pos": 321, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr321", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q3MHX3-1", "protein_name": "RNA-binding protein 4", "gene_name": "RBM4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRSGRVADFTEQYNEQYGAVRTPYTMGYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAASAYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAAAAAAAAAAAVTAASSSYYGRDRSPLRRATGPVPTVGEGYGYGHESELSQGSSAARNSLYDMARYEREQYADRARYSAF", "length": 362 }, "evidence": [ { "id": "F1RUT1", "url": "https://omabrowser.org/oma/group/F1RUT1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C7Q4-1", "protein_name": "RNA-binding protein 4", "gene_name": "Rbm4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNTYGALDAYYKRCRAARSYEAVAAAAASAYSNYAEQTLSQLPQVQNTAMASHLTSTSLDPYNRHLLPPSGAAAAAAAAAACTAASTSYYGRDRSPLRRATGPVLTVGEGYGYGHDSELSQASAAARNSLYDMARYEREQYADRARYSAF", "length": 361 }, "evidence": [ { "id": "F1RUT1", "url": "https://omabrowser.org/oma/group/F1RUT1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "pre-mRNA intronic pyrimidine-rich binding", "id": "GO:0097158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097158", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "miRNA binding", "id": "GO:0035198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035198", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "cyclin binding", "id": "GO:0030332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030332", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 13, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "response to arsenic-containing substance", "id": "GO:0046685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046685", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "negative regulation of translation in response to stress", "id": "GO:0032055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032055", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "regulation of nucleocytoplasmic transport", "id": "GO:0046822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046822", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "circadian rhythm", "id": "GO:0007623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007623", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "positive regulation of muscle cell differentiation", "id": "GO:0051149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051149", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "IRES-dependent translational initiation of linear mRNA", "id": "GO:0002192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002192", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "negative regulation of translational initiation", "id": "GO:0045947", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045947", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "miRNA-mediated gene silencing by inhibition of translation", "id": "GO:0035278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035278", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "entrainment of circadian clock by photoperiod", "id": "GO:0043153", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043153", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "regulation of alternative mRNA splicing, via spliceosome", "id": "GO:0000381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000381", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" }, { "name": "circadian regulation of translation", "id": "GO:0097167", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097167", "evidence": [ { "database": "UniProtKB", "id": "F1RUT1", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RUT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 162, "end_pos": 176, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RUT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUT1" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 72, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 298, 321 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 72, "end_pos": 74 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RUT6-1", "uniprot_ac": "F1RUT6", "uniprot_id": "F1RUT6_PIG", "mass": { "chemical_mass": 97688.0, "monoisotopic_mass": 97688.0 }, "refseq": { "ac": "XP_003480718", "name": "coiled-coil domain-containing protein 87", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480718" }, "gene_names": [ { "name": "CCDC87", "type": "recommended", "evidence": [ { "id": "F1RUT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ] }, { "name": "CCDC87", "type": "synonym", "evidence": [ { "id": "XP_003480718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480718" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 87", "type": "recommended", "evidence": [ { "id": "F1RUT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUT6/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 87", "type": "synonym", "evidence": [ { "id": "XP_003480718", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480718" } ] } ], "function": [ { "annotation": "Plays a role in spermatogenesis, where it is important for normal sperm head morphology. Also required for the acrosome reaction and thus normal male fertility.", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6#function" }, { "database": "UniProtKB", "id": "ARBA00057282", "url": "https://www.uniprot.org/uniprotkb/ARBA00057282#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC87", "url": "https://www.uniprot.org/uniprotkb/F1RUT6", "locus": { "chromosome": "2", "start_pos": 5836686, "end_pos": 5833464, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012933", "url": "https://www.ensembl.org/id/ENSSSCG00000012933" } ] } } ], "crossref": [ { "id": "F1RUT6", "url": "https://alphafold.ebi.ac.uk/entry/F1RUT6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012933", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012933", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737994", "url": "https://www.ncbi.nlm.nih.gov/gene/100737994", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737994", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737994", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GEWDWNT", "url": "https://omabrowser.org/oma/group/GEWDWNT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RUT6", "url": "https://www.orthodb.org/?gene=F1RUT6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16078", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16078", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16078:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16078:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03999", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03999", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480718", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480718", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUT6-1", "url": "https://www.uniprot.org/uniprotkb/F1RUT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPNKPEPELQRFYHKLLRPLSLFPRRATHTESEKRLPKEVPMLLPLPFSRLTVASLCRQVTERLASSGLEARAPAKVRLCFTQVILDELKCSWQEPPAEPGLSHLDNQRLRKRLLVYVLLSSELLFVRSLHLQKMLSTPASVFTESATLTRLAASLARECTIFLTSPDVYRGLLADFRALLKEEQAQARRSRLRPGGSPEAFRLCPIPWYESPSFAQVPNFNLSLNDLIQLSRPRESVSEPELDPVKELKSIPQLKKRKPLRWLSSVQKKRESNLGSPQPASLPACSAAPPSRTPAPSHLPLSFQLQRGQSLPSLREGWKLADELGLPPPSPRPLTPLVLVAESKPELAGDTVAEDLKQIMRNMELHRTRCSLVDSGLPPLLGALTYRPRPGHHMEELQRMLKGLEENEAAGQRPPTPPPLEAQPVTVTLKLRNQVVQAAAVQVSGRNFVDSFHVDGAGVLYNHLTGELEPRLVEEMDVDLSVGSSIREIYKELMSRVSKDHFSFDQGPLVEPAAIQDWSAFLSSAFLNQEKQRRSINTELAGLYPQGANTLQHPPDKMASLLSLQAGKSWEKRSHGALWMNWWKTALSVDDYFRYLANQETDFLHVIFHMYEEEVPAEPVTPVQETLKIQLPPPLLEEDEPDFVPGEWDWNTVLAHRLGPKKNNLLEDSHKILSLQKRLERLWSMLEVRDKDRLDMAVKYSSNARLRQLPSLVSAWERALQPIQLREILLGRLEWFERQASDPNRFFQKTATGLSRFLEESQIRSHLHRKLRLVEAPLVPLLEEIESVFGEPVTFKGRRYLDKMKQDKVEMLYWLQQWRRLRHLVRARRAPHPPTLSRKLSSQSLPVPGNTPNAL", "length": 857, "header": "tr|F1RUT6-1|F1RUT6_PIG Isoform 1 of Coiled-coil domain-containing protein 87 OS=Sus scrofa OX=9823 GN=CCDC87 PE=3 SV=2 CANONICAL=F1RUT6-1" }, "isoforms": [ { "isoform_ac": "F1RUT6-1", "url": "https://www.uniprot.org/uniprotkb/F1RUT6/entry", "sequence": { "sequence": "MEPNKPEPELQRFYHKLLRPLSLFPRRATHTESEKRLPKEVPMLLPLPFSRLTVASLCRQVTERLASSGLEARAPAKVRLCFTQVILDELKCSWQEPPAEPGLSHLDNQRLRKRLLVYVLLSSELLFVRSLHLQKMLSTPASVFTESATLTRLAASLARECTIFLTSPDVYRGLLADFRALLKEEQAQARRSRLRPGGSPEAFRLCPIPWYESPSFAQVPNFNLSLNDLIQLSRPRESVSEPELDPVKELKSIPQLKKRKPLRWLSSVQKKRESNLGSPQPASLPACSAAPPSRTPAPSHLPLSFQLQRGQSLPSLREGWKLADELGLPPPSPRPLTPLVLVAESKPELAGDTVAEDLKQIMRNMELHRTRCSLVDSGLPPLLGALTYRPRPGHHMEELQRMLKGLEENEAAGQRPPTPPPLEAQPVTVTLKLRNQVVQAAAVQVSGRNFVDSFHVDGAGVLYNHLTGELEPRLVEEMDVDLSVGSSIREIYKELMSRVSKDHFSFDQGPLVEPAAIQDWSAFLSSAFLNQEKQRRSINTELAGLYPQGANTLQHPPDKMASLLSLQAGKSWEKRSHGALWMNWWKTALSVDDYFRYLANQETDFLHVIFHMYEEEVPAEPVTPVQETLKIQLPPPLLEEDEPDFVPGEWDWNTVLAHRLGPKKNNLLEDSHKILSLQKRLERLWSMLEVRDKDRLDMAVKYSSNARLRQLPSLVSAWERALQPIQLREILLGRLEWFERQASDPNRFFQKTATGLSRFLEESQIRSHLHRKLRLVEAPLVPLLEEIESVFGEPVTFKGRRYLDKMKQDKVEMLYWLQQWRRLRHLVRARRAPHPPTLSRKLSSQSLPVPGNTPNAL", "length": 857, "header": "tr|F1RUT6-1|F1RUT6_PIG Isoform 1 of Coiled-coil domain-containing protein 87 OS=Sus scrofa OX=9823 GN=CCDC87 PE=3 SV=2 CANONICAL=F1RUT6-1" }, "locus": { "chromosome": "2", "start_pos": 5836092, "end_pos": 5833522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014138.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014138.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013752.2", "url": "https://www.ensembl.org/id/ENSSSCP00000013752.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737994", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737994", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8CDL9-1", "protein_name": "Coiled-coil domain-containing protein 87", "gene_name": "Ccdc87", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPHSQEPDLKPIYHRLLSPLSLFPSKAKPPPEPPKRPSQDATPLQSIPLAKLKVGPLCRQVSKRLASSGRAARVTAKDRLRLTEVILEELKCNWREPPIEPILDYENNQKLRQRLESYVLISSEQLFVRYLHLLVTLPTSRRVFTESATLSRLAVNLARDCTVFLTSPDVYRCLLADFQTLLNLKHAQGGIVKLRPPPCPPGTFKLCPIPWPHSTGLDHMPCSSLNLNYLVQLSRPYDFPSEPEPDPVEELKSIPQLKSRQQLLWVPSMIKDKEIESRPSPMVPLPSHSPSSESHQFPTSPVHSWLQRGQSMPCLHEGWSLADELCLLPPSPHPLTPLILASESKPLPFRDIVAEDLKQKMKIMRMEWSRYSLLDSGLPPLLGVLTRRLTAQHHLEKLQQMIKSLQEEEASGKWDLQPPRIIPLHPQPVTVALKVHDQVIVQVATVQLSERYFNDSFHVEGAGVLYNHLTGELDGKAIEEMDADRLVGNTTGEVYKELMSRVSVSHLSFEEGDQIEPSADKDWSSYLASSFLHQDKHMPIINRNLVGFYSRRTSTPKPVPEKVPSLTLLPRHKSWDKRPNRHGVWMNWLKPSVSSEDYFKYLSFQESDFLHVIFQMYEKEAPVEVPVPVQEYLDIQQPPPLLQDEELEFMQGKWDWSSVIEDGSGPGRAYIHNLQQRLKRLWVMLEVPEQNRLDMVIKYSSNARLQQLPALIKAWEQVLKPIQKRESLLGRLEWFEQQASDPNRFFQKPDLLMNRLLEENRFRSYLQRKLNRMESNLVSLLERIESVFGEPVTFKGRSYLKKMKQDKVEMLYWLQQQRRIRNLTQAQKTFRQSCTFTGSSSQALVAPGNTPTTH", "length": 855 }, "evidence": [ { "id": "F1RUT6", "url": "https://omabrowser.org/oma/group/F1RUT6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVE4-1", "protein_name": "Coiled-coil domain-containing protein 87", "gene_name": "CCDC87", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of acrosome reaction", "id": "GO:2000344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000344", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "pmid": "" }, { "name": "single fertilization", "id": "GO:0007338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007338", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "pmid": "" }, { "name": "positive regulation of fertilization", "id": "GO:1905516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905516", "evidence": [ { "database": "UniProtKB", "id": "F1RUT6", "url": "https://www.uniprot.org/uniprotkb/F1RUT6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RUT6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 857, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RUT6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RUT6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 223, "end_pos": 225 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RUW8-1", "uniprot_ac": "F1RUW8", "uniprot_id": "F1RUW8_PIG", "mass": { "chemical_mass": 54485.0, "monoisotopic_mass": 54485.0 }, "refseq": { "ac": "XP_005666021", "name": "fibroblast growth factor receptor substrate 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666021" }, "gene_names": [ { "name": "FRS3", "type": "recommended", "evidence": [ { "id": "F1RUW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUW8" } ] }, { "name": "FRS3", "type": "synonym", "evidence": [ { "id": "XP_005666021", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666021" } ] } ], "protein_names": [ { "name": "Fibroblast growth factor receptor substrate 3", "type": "synonym", "evidence": [ { "id": "F1RUW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RUW8/entry#names_and_taxonomy" } ] }, { "name": "fibroblast growth factor receptor substrate 3", "type": "synonym", "evidence": [ { "id": "XP_005666021", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666021" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RUW8", "url": "https://www.uniprot.org/uniprotkb/F1RUW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRS3", "url": "https://www.uniprot.org/uniprotkb/F1RUW8", "locus": { "chromosome": "7", "start_pos": 36959468, "end_pos": 36969478, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001624", "url": "https://www.ensembl.org/id/ENSSSCG00000001624" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001624", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001624", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01202", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01202", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153876", "url": "https://www.ncbi.nlm.nih.gov/gene/100153876", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153876", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153876", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CPEQPRQ", "url": "https://omabrowser.org/oma/group/CPEQPRQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RUW8", "url": "https://www.orthodb.org/?gene=F1RUW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5654693", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654693", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654712", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005666021", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666021", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RUW8", "url": "https://www.uniprot.org/uniprotkb/F1RUW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RUW8-1", "url": "https://www.uniprot.org/uniprotkb/F1RUW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSCCSCLNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEPVIITRNSHPAELDLPRAPQPPSALGYTVSSFSNGFPGCPGEGPRFSAPRRPSTSSLRHPSLGEESTHALIAPDEQSHTYVNTPTGEDEHRRSRHCLQPLPEGQAPLAPQARASDQRAPQVFLQPGQVKFVLGPTPARRQVTKCQGLCPGLQDAPPNNNNNEGPSECPAQPRCTYENISAGLRPGAGWRLSPEEPGWNGLAHRRAALLHYENLPSLPPVWESQAQPLGEEAAEDGDSRDGLTPSSNGFPEGEEDETPLQKPTSTRAALRSHGSFPVPLTRRRGSPRVFNFDFRRPGPEPPRQLNYIQVELKGWGGDRPKGPQNPSAPRAPVPITHPARSSDSYAVIDLKKTVAMSNLQRALPRDDGTARKTRHNSTDLPL", "length": 495, "header": "tr|F1RUW8-1|F1RUW8_PIG Isoform 1 of Fibroblast growth factor receptor substrate 3 OS=Sus scrofa OX=9823 GN=FRS3 PE=4 SV=1 CANONICAL=F1RUW8-1" }, "isoforms": [ { "isoform_ac": "F1RUW8-1", "url": "https://www.uniprot.org/uniprotkb/F1RUW8/entry", "sequence": { "sequence": 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"tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RV21-1", "uniprot_ac": "F1RV21", "uniprot_id": "F1RV21_PIG", "mass": { "chemical_mass": 57217.0, "monoisotopic_mass": 57217.0 }, "refseq": { "ac": "XP_013845364", "name": "monocarboxylate transporter 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845364" }, "gene_names": [ { "name": "SLC16A6", "type": "recommended", "evidence": [ { "id": "F1RV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV21" } ] }, { "name": "SLC16A6", "type": "synonym", "evidence": [ { "id": "XP_013845364", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845364" } ] } ], "protein_names": [ { "name": "Monocarboxylate transporter 7", "type": "recommended", "evidence": [ { "id": "F1RV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV21/entry#names_and_taxonomy" } ] }, { "name": "Monocarboxylate transporter 6", "type": "synonym", "evidence": [ { "id": "F1RV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV21/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 16 member 6", "type": "synonym", "evidence": [ { "id": "F1RV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV21/entry#names_and_taxonomy" } ] }, { "name": "monocarboxylate transporter 7", "type": "synonym", "evidence": [ { "id": "XP_013845364", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845364" } ] } ], "function": [ { "annotation": "Monocarboxylate transporter selective for taurine. May associate with BSG/CD147 or EMB/GP70 ancillary proteins to mediate facilitative efflux or influx of taurine across the plasma membrane. The transport is pH- and sodium-independent. Rather low-affinity, is likely effective for taurine transport in tissues where taurine is present at high concentrations.", "evidence": [ { "database": "UniProtKB", "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21#function" }, { "database": "UniProtKB", "id": "ARBA00058516", "url": "https://www.uniprot.org/uniprotkb/ARBA00058516#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC16A6", "url": "https://www.uniprot.org/uniprotkb/F1RV21", "locus": { "chromosome": "12", "start_pos": 11875313, "end_pos": 11857955, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017262", "url": "https://www.ensembl.org/id/ENSSSCG00000017262" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017262", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017262", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17422", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17422", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100739042", "url": "https://www.ncbi.nlm.nih.gov/gene/100739042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739042", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TFFCGVQ", "url": "https://omabrowser.org/oma/group/TFFCGVQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RV21", "url": "https://www.orthodb.org/?gene=F1RV21", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013845364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845364", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "66328", "url": "https://www.rhea-db.org/rhea/66328", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV21-1", "url": "https://www.uniprot.org/uniprotkb/F1RV21-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQKKSQLCSRANVYTQVPDGGWGWVVAVSFFFVEVFTYGIIKSFGVFFNDLMDSFDESNSRISWIISICVFVLTFTAPLSTVLSTRFGHRLVVMAGGLLVSTGMVTASFSQKVYHMYLAIGIISGLGYCFSFLPTVTILSQYFDKRRSVVTAVASTGECFAMFAFAPAITALKETIGWRYSLLFVGLLQLNIIVCGAMLRPIVISGPGTPKATTHENRREVQYMLENEKTRTSIDSIDSGVELTTSPRNVPSHPGVEPEPKADLQQILGKPSSKQSDQKPPLLDFSVLREKSFICYAFFGLFVTLGFFAPSLYIIPLGLSLGIDQDRSAFLLSTMAIAEVFGRIGAGLVLNREPIRKIYIELVCVILLTVSLFAFTFATDFWGLMSCSIFFGAMVGTVGGTHIPLLAEDDVVGIEKMSSAAGVYVFFQSVAGLAGPPLAGLLVDQSKIYSRAFYSCAAGMFLAALCLALVRPCKRGLCQRPRAHEGTAETHRGKALQDIPEDFLEMDLGKHEHKGHLKTEPV", "length": 523, "header": "tr|F1RV21-1|F1RV21_PIG Isoform 1 of Monocarboxylate transporter 7 OS=Sus scrofa OX=9823 GN=SLC16A6 PE=4 SV=3 CANONICAL=F1RV21-1" }, "isoforms": [ { "isoform_ac": "F1RV21-1", "url": "https://www.uniprot.org/uniprotkb/F1RV21/entry", "sequence": { "sequence": "MTQKKSQLCSRANVYTQVPDGGWGWVVAVSFFFVEVFTYGIIKSFGVFFNDLMDSFDESNSRISWIISICVFVLTFTAPLSTVLSTRFGHRLVVMAGGLLVSTGMVTASFSQKVYHMYLAIGIISGLGYCFSFLPTVTILSQYFDKRRSVVTAVASTGECFAMFAFAPAITALKETIGWRYSLLFVGLLQLNIIVCGAMLRPIVISGPGTPKATTHENRREVQYMLENEKTRTSIDSIDSGVELTTSPRNVPSHPGVEPEPKADLQQILGKPSSKQSDQKPPLLDFSVLREKSFICYAFFGLFVTLGFFAPSLYIIPLGLSLGIDQDRSAFLLSTMAIAEVFGRIGAGLVLNREPIRKIYIELVCVILLTVSLFAFTFATDFWGLMSCSIFFGAMVGTVGGTHIPLLAEDDVVGIEKMSSAAGVYVFFQSVAGLAGPPLAGLLVDQSKIYSRAFYSCAAGMFLAALCLALVRPCKRGLCQRPRAHEGTAETHRGKALQDIPEDFLEMDLGKHEHKGHLKTEPV", "length": 523, "header": "tr|F1RV21-1|F1RV21_PIG Isoform 1 of Monocarboxylate transporter 7 OS=Sus scrofa OX=9823 GN=SLC16A6 PE=4 SV=3 CANONICAL=F1RV21-1" }, "locus": { "chromosome": "12", "start_pos": 11873317, "end_pos": 11864126, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018791.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018791.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018289.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018289.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739042", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AI09-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "SLC16A6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTVKAVKMPCTTPNVYTKVPDGGWGWAIAVAFFFVEALTYGVIKSFGVFFNDLMESFDETNSRISWIISICVFVQTFTAPLSTVLTNRFGHRFVVMAGGVLVSTGMITASFARSVVHMYITIGIISGLGYCLSFLPTVTILSQYFDKRRSLVTAVASTGECFAVFLFAPVNTHLKEQIGWRYSLLFVGALQLSIVICGSLLRPMIIKEQEEEEEVKVQPPEEPAETKYMLENEQTRTSIESIDSGVEITTSPKNVPGNTKAEPKSEEPKDHVQITVENNSTPTEPKTKLLDFSVMRDYSFICYAFFGLFATLGFFAPSLYVIPLSRSLGISKDHSAYILSAMAIAEVLGRISAGWVLNREPIRKIHIELICVILLSVALFAFPFASEFWGLMTCSIFFGFMLGTVAGTHIPLLAEDDVVGIARMSSAAGVYVFIQSFSGLAGPPLAGVIVDRTQNYSSAFYSCAAGTVMGAVFLSLVRPCKVGMCHQQPAGAEGSVVEGTQDSPEDFIDMDIGKADHSGKGSDSVA", "length": 526 }, "evidence": [ { "id": "F1RV21", "url": "https://omabrowser.org/oma/group/F1RV21/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B1AT66-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRASGQGPQRRRRGWATRDDSAVTFRDPQPRQPAGGARALRGPDPRGPARAHQAGPLLAGARRSQHMVGGAPPRPAETGCSRSRMTQKNSKLCARANVYTQVPDGGWGWAVAVSFFFVEVFTYGIIKSFGVFFNDLMDSFDESNSKISWIISICVFVLTFTAPLSTVLSNRFGHRLVVMAGGLLISLGMITASFSQRVYHMYISIGVISGLGYCFSFLPTVTILSQYFDKRRSVVTAVASTGECFAVFAFAPAITALKEHIGWRYSLLFVGLLQLNIMVCGALLRPIIIQGPGQSPKAVTLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKMEQETRAEQQQTLVTAPKHSQMKAPLLDFSVLKEKSFICYALFGLFATLGFFAPSLYIIPLGISLGIDPDRAAFLLSTMAIAEVFGRIGAGFVLNREPIRKIYIELICVILLTASLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPMLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMCLAAVCLALVRPCKKGLCQNSHSGENQTDRQRGKALQDIPEDFLEMDLGKCEHRAHMKMDPV", "length": 607 }, "evidence": [ { "id": "F1RV21", "url": "https://omabrowser.org/oma/group/F1RV21/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MBH6-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "SLC16A6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSHKKSQLCCRANVYTQVPDGGWGWVVAVFFFVEVFTYGIIKSFGVFFNDLMDSFNESNSRISWIISICVFVLTFTAPLSTVLSSRFGHRLVVMLGGLLVSAGMVTAAFSQKVYHMYIAIGIVSGLGFCFSFLPTVTILSQYFDRRRSVVTAVASTGECFAMFAFAPAITALKETVGWRYSMLFVGLLQLNLVVCGALLRPIVIVGAPGTPKTPAPEHRKEAQYMLENEKTRTSIDSIDSGVELTTSPKNVPGHPAMVEPAAELQARGQPGAPLLDFSVLTERSFICYTLFGLFVTLGFFAPSLYIIPLGLSLGLDRDRAALLLCAMAVAEVFGRIGAGLVLNREPIRKVYIELICVILLTLSLFTFTFAAGFWGLMACSVFSGAMIGTVAGTHIPLLAEDDVVGIQKMSSAAGVYVFFQSISGLAGPPLAGLLVDQSRIYSRAFYSCAAGMLVAAVCLALVRPCKQGLCCRPRAREGKAGGPRGKKVLQDIPEDFLEMDLGKTEHRAPARTEPV", "length": 515 }, "evidence": [ { "id": "F1RV21", "url": "https://omabrowser.org/oma/group/F1RV21/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O15403-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "SLC16A6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTQNKLKLCSKANVYTEVPDGGWGWAVAVSFFFVEVFTYGIIKTFGVFFNDLMDSFNESNSRISWIISICVFVLTFSAPLATVLSNRFGHRLVVMLGGLLVSTGMVAASFSQEVSHMYVAIGIISGLGYCFSFLPTVTILSQYFGKRRSIVTAVASTGECFAVFAFAPAIMALKERIGWRYSLLFVGLLQLNIVIFGALLRPIFIRGPASPKIVIQENRKEAQYMLENEKTRTSIDSIDSGVELTTSPKNVPTHTNLELEPKADMQQVLVKTSPRPSEKKAPLLDFSILKEKSFICYALFGLFATLGFFAPSLYIIPLGISLGIDQDRAAFLLSTMAIAEVFGRIGAGFVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMSCSIFFGFMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYIFIQSIAGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKMGLCQHHHSGETKVVSHRGKTLQDIPEDFLEMDLAKNEHRVHVQMEPV", "length": 523 }, "evidence": [ { "id": "F1RV21", "url": "https://omabrowser.org/oma/group/F1RV21/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q08777-1", "protein_name": "Riboflavin transporter MCH5", "gene_name": "MCH5", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSSDSLTPKDTIVPEEQTNQLRQPDLDEDSIHYDPEADDLESLETTASYASTSVSAKVYTKKEVNKGTDIESQPHWGENTSSTHDSDKEEDSNEEIESFPEGGFKAWVVTFGCFLGLIACFGLLNSTGVIESHLQDNQLSSESVSTIGWLFSLFLFVCSASCIISGTYFDRNGFRTIMIVGTVFHVAGLFATANSTKYWHFILSFAIVCGFGNGIVLSPLVSVPAHYFFKRRGTALAMATIGGSVGGVVFPIMLRSFFSMKSDTDPTYGFVWGIRTLGFLDLALLTLSIILVKERLPHVIENSKDGESRWRYILRVYILQCFDAKAFLDMKYLFCVLGTVFSELSINSALTYYGSYATSHGISANDAYTLIMIINVCGIPGRWVPGYLSDKFGRFNVAIATLLTLFIVMFVGWLPFGTNLTNMYVISALYGFCSGSVFSLLPVCCGQISKTEEFGKRYSTMYFVVGFGTLVGIPITGAIISIKTTADYQHYIIFCGLATFVSAVCYIISRAYCVGFKWVRF", "length": 521 }, "evidence": [ { "id": "F1RV21", "url": "https://omabrowser.org/oma/group/F1RV21/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "monocarboxylic acid transmembrane transporter activity", "id": "GO:0008028", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008028", "evidence": [ { "database": "UniProtKB", "id": "F1RV21", "url": "https://www.uniprot.org/uniprotkb/F1RV21" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "66328", "name": "", "equation": "taurine(out) = taurine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "66328", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/66328" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RV21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV21" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 476, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], 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"common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTNAP1", "url": "https://www.uniprot.org/uniprotkb/F1RV34", "locus": { "chromosome": "12", "start_pos": 7710279, "end_pos": 7725080, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017246", "url": "https://www.ensembl.org/id/ENSSSCG00000017246" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017246", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017246", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517602", "url": "https://www.ncbi.nlm.nih.gov/gene/100517602", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517602", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517602", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RV34", "url": "https://www.orthodb.org/?gene=F1RV34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16270:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16270:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28519", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28519", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RV34", "url": "https://www.uniprot.org/uniprotkb/F1RV34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV34-1", "url": "https://www.uniprot.org/uniprotkb/F1RV34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVCPYCKKPFKRLKSHLPHCKMLRPPVPADQDVCQSKPAALPHAKKVKGPVRDPIKARERELGTDHEKRNPGLKGDKSERTGKSSLLLAIDLKKASSAKADKDIRDQVQPSLKMLKNTATEITFHEEPTAPFSASENITHKKGLPEDLPKSGEGRNNPSETEASLFLGPVEPSLSSQDRKYCSAFPNDVQTTCANLRLDRIDAPRQNLRVKLQTVPFGDHHSSPGDLDCDGRRVSTSWPSRVRVPKAGEPLSGVATDLGDTRTQEKNTEPRIAAFKVSPLGAIQVRENQDQGLNLATEAQGSSGNAENCVFVTEIQRWAPLNDDPKKAFSINDSVTAKNPRGEGPNIDLITPQETACRELLSASQSRNPSLVSLAIQFLQEGKAEACSPAGKASAEHEEQASLAPSSGCRPQALHPGGQLSLCSAQPHAAKNPLARKTLSSALGLEWFPELYPGYLGLGVLPGKPQLWSAVAQKPLLISPQGERLSQVPLLERSSTAVRSLEPSTELTASSFSLLRILGAVQKGWIRCSTTMKSGVGGITMLFAGYFVLCCSWSFKHLKLQRWRKQH", "length": 568, "header": "tr|F1RV34-1|F1RV34_PIG Isoform 1 of Mitochondrial nucleoid associated protein 1 OS=Sus scrofa OX=9823 GN=MTNAP1 PE=4 SV=3 CANONICAL=F1RV34-1" }, "isoforms": [ { "isoform_ac": "F1RV34-1", "url": "https://www.uniprot.org/uniprotkb/F1RV34/entry", "sequence": { "sequence": "MEVCPYCKKPFKRLKSHLPHCKMLRPPVPADQDVCQSKPAALPHAKKVKGPVRDPIKARERELGTDHEKRNPGLKGDKSERTGKSSLLLAIDLKKASSAKADKDIRDQVQPSLKMLKNTATEITFHEEPTAPFSASENITHKKGLPEDLPKSGEGRNNPSETEASLFLGPVEPSLSSQDRKYCSAFPNDVQTTCANLRLDRIDAPRQNLRVKLQTVPFGDHHSSPGDLDCDGRRVSTSWPSRVRVPKAGEPLSGVATDLGDTRTQEKNTEPRIAAFKVSPLGAIQVRENQDQGLNLATEAQGSSGNAENCVFVTEIQRWAPLNDDPKKAFSINDSVTAKNPRGEGPNIDLITPQETACRELLSASQSRNPSLVSLAIQFLQEGKAEACSPAGKASAEHEEQASLAPSSGCRPQALHPGGQLSLCSAQPHAAKNPLARKTLSSALGLEWFPELYPGYLGLGVLPGKPQLWSAVAQKPLLISPQGERLSQVPLLERSSTAVRSLEPSTELTASSFSLLRILGAVQKGWIRCSTTMKSGVGGITMLFAGYFVLCCSWSFKHLKLQRWRKQH", "length": 568, "header": "tr|F1RV34-1|F1RV34_PIG Isoform 1 of Mitochondrial nucleoid associated protein 1 OS=Sus scrofa OX=9823 GN=MTNAP1 PE=4 SV=3 CANONICAL=F1RV34-1" }, "locus": { "chromosome": "12", "start_pos": 7720534, "end_pos": 7710405, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018775.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018775.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018273.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018273.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RV34", "url": "https://www.uniprot.org/uniprotkb/F1RV34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517602", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517602", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial nucleoid", "id": "GO:0042645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042645", "evidence": [ { "database": "UniProtKB", "id": "F1RV34", "url": "https://www.uniprot.org/uniprotkb/F1RV34" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RV34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV34" }, { "id": "PF28519", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28519" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mitochondrial nucleoid-associated protein 1 zinc finger", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 24, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 138, "end_pos": 140 }, { "start_pos": 333, "end_pos": 335 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RV38-1", "uniprot_ac": "F1RV38", "uniprot_id": "F1RV38_PIG", 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"https://alphafold.ebi.ac.uk/entry/F1RV38", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005890", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005890", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156915", "url": "https://www.ncbi.nlm.nih.gov/gene/100156915", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1RV38", "url": "https://www.orthodb.org/?gene=F1RV38", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF246", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF246", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013843422", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843422", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV38-1", "url": "https://www.uniprot.org/uniprotkb/F1RV38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAVTFGDVAVHFSREEWQCLDPGQRALYKEVMLENHSSVAGLAGFLVFKPELISRLEQGQEPWVLDLQGTEGREAPRPSRTDSMIGSNSQQACEDVDILKPDSRVTMVKLLPQDFPQSPCFGATSDLEVWSESQPGFLFQGNCSNTGILAPKGKAKVRGEQGSSGRLGCQLDKSQGWSRRCDVCGKRFRSNSDVALHVETNAQKKPNRCQECQKKLPDCLQGRHQSTFHAEKPYECEECGKVFRLCSQLHQHQRIHTGEKPFKCIECGKAFRLSSKLIQHQRIHTGEKPYRCEECGKAFGQSSSLIHHQRVHTGERPYPCRECGKAFSQQSQLVRHQRTHTGERPYPCLECGKAFSQSSTLAQHQRMHAGEKLELPKNPDSPIPVAHQRTHAMEKPFKCDECGKAFRWVSRLSQHQLTHTGEKPYKCNKCSKAFGCSSRLIRHQRTHTGEKPFKCDECGKGFVQGSHLIQHQRIHTGEKPYECSDCGKAFSQSSSLIYHQRIHKGEKPYECLECGKAFSMSTQLTIHQRVHTGERPYKCSECGKAFSQNSTLFQHQIIHAGVKPYGCSECGKAFSRSSYLIEHQRIHTRAQWNHEYGNALEGSTHVSRRKVSTVKKLHKCNECEKIFRWRSHLIIHQRTHTGEKPYKCNECGKAFNRSSRLTQHQKIHTG", "length": 671, "header": "tr|F1RV38-1|F1RV38_PIG Isoform 1 of Zinc finger protein 7 OS=Sus scrofa OX=9823 GN=ZNF7 PE=3 SV=4 CANONICAL=F1RV38-1" }, "isoforms": [ { "isoform_ac": "F1RV38-1", "url": "https://www.uniprot.org/uniprotkb/F1RV38/entry", "sequence": { "sequence": "MEAVTFGDVAVHFSREEWQCLDPGQRALYKEVMLENHSSVAGLAGFLVFKPELISRLEQGQEPWVLDLQGTEGREAPRPSRTDSMIGSNSQQACEDVDILKPDSRVTMVKLLPQDFPQSPCFGATSDLEVWSESQPGFLFQGNCSNTGILAPKGKAKVRGEQGSSGRLGCQLDKSQGWSRRCDVCGKRFRSNSDVALHVETNAQKKPNRCQECQKKLPDCLQGRHQSTFHAEKPYECEECGKVFRLCSQLHQHQRIHTGEKPFKCIECGKAFRLSSKLIQHQRIHTGEKPYRCEECGKAFGQSSSLIHHQRVHTGERPYPCRECGKAFSQQSQLVRHQRTHTGERPYPCLECGKAFSQSSTLAQHQRMHAGEKLELPKNPDSPIPVAHQRTHAMEKPFKCDECGKAFRWVSRLSQHQLTHTGEKPYKCNKCSKAFGCSSRLIRHQRTHTGEKPFKCDECGKGFVQGSHLIQHQRIHTGEKPYECSDCGKAFSQSSSLIYHQRIHKGEKPYECLECGKAFSMSTQLTIHQRVHTGERPYKCSECGKAFSQNSTLFQHQIIHAGVKPYGCSECGKAFSRSSYLIEHQRIHTRAQWNHEYGNALEGSTHVSRRKVSTVKKLHKCNECEKIFRWRSHLIIHQRTHTGEKPYKCNECGKAFNRSSRLTQHQKIHTG", "length": 671, "header": "tr|F1RV38-1|F1RV38_PIG Isoform 1 of Zinc finger protein 7 OS=Sus scrofa OX=9823 GN=ZNF7 PE=3 SV=4 CANONICAL=F1RV38-1" }, "locus": { "chromosome": "4", "start_pos": 169041, "end_pos": 160798, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006469.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006469.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006298.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006298.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1RV38", "url": "https://www.uniprot.org/uniprotkb/F1RV38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 657, "end_pos": 659, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RV38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 671, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RV38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RV38" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RV38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV38" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 180, "end_pos": 207, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RV38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV38" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 76, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 36, "end_pos": 38 }, { "start_pos": 550, "end_pos": 552 }, { "start_pos": 657, "end_pos": 659 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RV52-1", "uniprot_ac": "F1RV52", "uniprot_id": "F1RV52_PIG", "mass": { "chemical_mass": 25911.0, "monoisotopic_mass": 25911.0 }, "refseq": { "ac": "NP_001231232", "name": "CMRF35-like molecule 6 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231232" }, "gene_names": [ { "name": "CD300C", "type": "recommended", "evidence": [ { "id": "F1RV52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV52" } ] }, { "name": "CD300C", "type": "synonym", "evidence": [ { "id": "NP_001231232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231232" } ] } ], "protein_names": [ { "name": "CD300c molecule", "type": "synonym", "evidence": [ { "id": "F1RV52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV52/entry#names_and_taxonomy" } ] }, { "name": "CMRF35-like molecule 6 precursor", "type": "synonym", "evidence": [ { "id": "NP_001231232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231232" } ] }, { "name": "CMRF35-like molecule 6", "type": "synonym", "evidence": [ { "id": "NP_001231232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231232" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RV52", "url": "https://www.uniprot.org/uniprotkb/F1RV52" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD300C", "url": "https://www.uniprot.org/uniprotkb/F1RV52", "locus": { "chromosome": "12", "start_pos": 6635986, "end_pos": 6632136, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017236", "url": "https://www.ensembl.org/id/ENSSSCG00000017236" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017236", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017236", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05716", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05716", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514248", "url": "https://www.ncbi.nlm.nih.gov/gene/100514248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514248", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514248", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGAMWLR", "url": "https://omabrowser.org/oma/group/CGAMWLR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RV52", "url": "https://www.orthodb.org/?gene=F1RV52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11860", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11860", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11860:SF115", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11860:SF115", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231232", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RV52", "url": "https://www.uniprot.org/uniprotkb/F1RV52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV52-1", "url": "https://www.uniprot.org/uniprotkb/F1RV52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPRVGAVWLPSALLLLRVPGCLSLSGPPTAMGTKGGSLSVQCRYEEEYIDDKKYWDKSPCFLSWKHIVETTESAREVRRGRVSIRDDPANLTFTVTLERLTEEDAGTYCCGITAQFSVDPTHEVEVVVFPALGTSRPPSMPGPPTTLPATTWSFVSERETMANNLGKGPASQDPGQHPRSKHPSIRLLLLVFLEVPLFLGMLGAVLWVHRPLRSSESRSVAMDPVPGNTAPSAGWK", "length": 237, "header": "tr|F1RV52-1|F1RV52_PIG Isoform 1 of CD300c molecule OS=Sus scrofa OX=9823 GN=CD300C PE=4 SV=2 CANONICAL=F1RV52-1" }, "isoforms": [ { "isoform_ac": "F1RV52-1", "url": "https://www.uniprot.org/uniprotkb/F1RV52/entry", "sequence": { "sequence": "MTPRVGAVWLPSALLLLRVPGCLSLSGPPTAMGTKGGSLSVQCRYEEEYIDDKKYWDKSPCFLSWKHIVETTESAREVRRGRVSIRDDPANLTFTVTLERLTEEDAGTYCCGITAQFSVDPTHEVEVVVFPALGTSRPPSMPGPPTTLPATTWSFVSERETMANNLGKGPASQDPGQHPRSKHPSIRLLLLVFLEVPLFLGMLGAVLWVHRPLRSSESRSVAMDPVPGNTAPSAGWK", "length": 237, "header": "tr|F1RV52-1|F1RV52_PIG Isoform 1 of CD300c molecule OS=Sus scrofa OX=9823 GN=CD300C PE=4 SV=2 CANONICAL=F1RV52-1" }, "locus": { "chromosome": "12", "start_pos": 6635785, "end_pos": 6632460, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018765.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018765.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018263.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018263.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": 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GN=BMP15 PE=3 SV=2 CANONICAL=F1RV73-1" }, "isoforms": [ { "isoform_ac": "F1RV73-1", "url": "https://www.uniprot.org/uniprotkb/F1RV73/entry", "sequence": { "sequence": "MLLNKSFKMVLLSIIRTLLLWGLVLFMEHRVQMTQVGQPSVALLPEACTLPLIRELLEEAPGKQQRKPQVLGHPLRYMLELYQRSADARGHPRENRTIGATMVRLVRPLVNGARPLRGPWHIQTLDFPLRPNRVAYQLVRATVVYRHQLHLAPFHLSCHVEPWIQKSTTSHFPSSGRGSLKPSLLPQAWTEMDVTQHVGQKLWNHKGRRVLRLRFMCQQQNGSEILEFRGRGISSLDTAFLLLYFNDTRSVQKAKLLPRGLEEFMARDPSLLLRKARQAGSIASEVLGPSREHDGPESNQCSLHPFQVSFHQLGWDHWIIAPHFYTPNYCKGVCPRVLHYGLNSPNHAIIQNLVNELVDQSVPQPSCVPYKYVPISILLIEANGSILYKEYEDMIAQSCTCR", "length": 402, "header": "tr|F1RV73-1|F1RV73_PIG Isoform 1 of Bone morphogenetic protein 15 OS=Sus scrofa OX=9823 GN=BMP15 PE=3 SV=2 CANONICAL=F1RV73-1" }, "locus": { "chromosome": "X", "start_pos": 44619359, "end_pos": 44613175, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013461.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013461.4" }, { "database": "Ensembl Peptide", "id": 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"Reproduction (Cambridge, England)", "date": "2009-07", "authors": "Paradis Francois, Novak Susan, Murdoch Gordon K, Dyck Michael K, Dixon Walter T, Foxcroft George R", "evidence": [ { "database": "RefSeq", "id": "NP_001005155", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001005155" } ], "reference": [ { "type": "PubMed", "id": "19359354", "url": "https://glygen.org/publication/PubMed/19359354" } ] }, { "title": "Effects of growth differentiation factor 9 and bone morphogenetic protein 15 on the in vitro maturation of porcine oocytes.", "journal": "Reproduction in domestic animals = Zuchthygiene", "date": "2014-04", "authors": "Lin Z-L, Li Y-H, Xu Y-N, Wang Q-L, Namgoong S, Cui X-S, Kim N-H", "evidence": [ { "database": "RefSeq", "id": "NP_001005155", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001005155" } ], "reference": [ { "type": "PubMed", "id": "24313324", "url": "https://glygen.org/publication/PubMed/24313324" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RV73", "url": "https://www.uniprot.org/uniprotkb/F1RV73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Efficient generation of bone morphogenetic protein 15-edited Yorkshire pigs using CRISPR/Cas9\u2020.", "journal": "Biology of reproduction", "date": "2020-10-29", "authors": "Shi Xuan, Tang Tao, Lin Qiyuan, Liu Hongbo, Qin Yufeng, Liang Xinyu, Cong Peiqing, Mo Delin, Liu Xiaohong, Chen Yaosheng, He Zuyong", "evidence": [ { "database": "RefSeq", "id": "NP_001005155", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001005155" } ], "reference": [ { "type": "PubMed", "id": "32761111", "url": "https://glygen.org/publication/PubMed/32761111" } ] }, { "title": "Molecular characterization of the follicular development of BMP15-edited pigs.", "journal": "Reproduction (Cambridge, England)", "date": "2023-10-01", "authors": "Jiao Yafei, Jiang Tiantuan, Lin Qiyuan, Guo Jinming, Bei Chang, Cong Peiqing, Mo Delin, Liu Xiaohong, Chen Yaosheng, He Zuyong", "evidence": [ { "database": "RefSeq", "id": "NP_001005155", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001005155" } ], "reference": [ { "type": "PubMed", "id": "37561570", "url": "https://glygen.org/publication/PubMed/37561570" } ] } ], "pathway": [ { "id": "ssc:448811", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:448811", "resource": "KEGG Pathway" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7H225-1", "protein_name": "Bone morphogenetic protein 15", "gene_name": "Bmp15", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RV92-1", "uniprot_ac": "F1RV92", "uniprot_id": "F1RV92_PIG", "mass": { "chemical_mass": 17543.0, "monoisotopic_mass": 17543.0 }, "refseq": {}, "gene_names": [ { "name": "C6orf52", "type": "recommended", "evidence": [ { "id": "F1RV92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RV92" } ] } ], "protein_names": [ { "name": "Chromosome 7 C6orf52 homolog", "type": "synonym", "evidence": [ { "id": "F1RV92", "database": "UniProtKB", "url": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YYWYWQS", "url": "https://omabrowser.org/oma/group/YYWYWQS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR37457", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37457", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37457:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37457:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RV92", "url": "https://www.uniprot.org/uniprotkb/F1RV92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RV92-1", "url": "https://www.uniprot.org/uniprotkb/F1RV92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGQESCAGFGTAQQNNFYWYWQRVKPDSQPCLSYSFGNWFGQQHSGCSPSGYSCGFAMAGNGPNLYSAPETPGCTAGTWLPPKETTALAENQDEDSLEDPNLHLNIDASNEEFMVKSEELYDSLMNCHWQPLDTVHSEIPDEIPHKQNVHPATQLSH", "length": 158, "header": "tr|F1RV92-1|F1RV92_PIG Isoform 1 of Chromosome 7 C6orf52 homolog OS=Sus scrofa OX=9823 GN=C6orf52 PE=4 SV=1 CANONICAL=F1RV92-1" }, "isoforms": [ { "isoform_ac": "F1RV92-1", "url": "https://www.uniprot.org/uniprotkb/F1RV92/entry", "sequence": { "sequence": "MAGQESCAGFGTAQQNNFYWYWQRVKPDSQPCLSYSFGNWFGQQHSGCSPSGYSCGFAMAGNGPNLYSAPETPGCTAGTWLPPKETTALAENQDEDSLEDPNLHLNIDASNEEFMVKSEELYDSLMNCHWQPLDTVHSEIPDEIPHKQNVHPATQLSH", "length": 158, "header": "tr|F1RV92-1|F1RV92_PIG Isoform 1 of Chromosome 7 C6orf52 homolog OS=Sus scrofa OX=9823 GN=C6orf52 PE=4 SV=1 CANONICAL=F1RV92-1" }, "locus": { "chromosome": "7", "start_pos": 7437550, "end_pos": 7430569, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001134.3", "url": "https://www.ensembl.org/id/ENSSSCT00000001134.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001111.1", "url": "https://www.ensembl.org/id/ENSSSCP00000001111.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVD5-1", "uniprot_ac": "F1RVD5", "uniprot_id": "F1RVD5_PIG", "mass": { "chemical_mass": 102935.0, "monoisotopic_mass": 102935.0 }, "refseq": { "ac": "XP_003129402", "name": "DNA transposase THAP9 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129402" }, "gene_names": [ { "name": "THAP9", "type": "recommended", "evidence": [ { "id": "F1RVD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVD5" } ] }, { "name": "THAP9", "type": "synonym", "evidence": [ { "id": "XP_003129402", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129402" } ] } ], "protein_names": [ { "name": "DNA transposase THAP9 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003129402", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129402" } ] }, { "name": "THAP domain containing 9", "type": "synonym", "evidence": [ { "id": "F1RVD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVD5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVD5", "url": "https://www.uniprot.org/uniprotkb/F1RVD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "THAP9", "url": "https://www.uniprot.org/uniprotkb/F1RVD5", "locus": { "chromosome": "8", "start_pos": 135394779, "end_pos": 135420733, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009243", "url": "https://www.ensembl.org/id/ENSSSCG00000009243" } ] } } ], "crossref": [ { "id": "F1RVD5", "url": "https://alphafold.ebi.ac.uk/entry/F1RVD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009243", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009243", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525594", "url": "https://www.ncbi.nlm.nih.gov/gene/100525594", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048366", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048366", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525594", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525594", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HWQHLVD", "url": "https://omabrowser.org/oma/group/HWQHLVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVD5", "url": "https://www.orthodb.org/?gene=F1RVD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47577", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47577", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47577:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47577:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05485", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05485", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21787", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21787", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21789", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21789", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129402", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129402", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RVD5", "url": "https://www.uniprot.org/uniprotkb/F1RVD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVD5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSQWIRAVNRMDPRSKKIWIPGPGAMLCSKHFQESDFESYGIRRKLKKGAVPSVSLYKVLQGAHLKGKARQKILKQPLPDNSQEVATEDHNYSLKGPLTIGAEKLAEVQQMLQVSRKRLASAKNYRMIKKRKGLRLIDALVEEKLLSEETEYLLRAQFSDFKWELYNWRETAGYSTEMKQFACTLYLCSSKVYDYVRKILKLPHSSILRTWLSRCKPGPGFHSNVFSFLQQKVENGDQLYQYCSLIIKGISLKQQLQWDPSSHQLQGFMDFGLGKLDADEMPLASETVVLMAVGISGHWRTPLGYFFVNRASGYLQAQLLRLTIGKLSDIGVTVLAVTSDATADSVQMAKSLGIRMDGDNMKCTFQHPSSSGQQVAYFFDPCHLLRLVRNAFQNFQSIQFINGTAHWQHLVELVTFQEQELSNIERIPRKLASLKHHILKTNGAAQLFSESMASALECLRSLGLPPFQNCVGTIHFLRLINNLFDIFNSRNYYGKGLKGPLVPKTFNKINHVLIEAKTIFVTLSDSNNNQIIKGKRKLGFLGFLLNAESLQWLYQNYVSPKVTPFPYLLTYKFSQDHLELFLKMLRQVLVASSNPTCMAFQKAYHNLETRHRLQEEVFLGEVSVLDISIARRADLALRTVQQQYDVSVTKTLFHKEDVCQDWSDRLLSEALLDLSDHRRSLTCCAGYIANKLSALLTCEDCIGALYASDLKASKIGSLLCVKKVNGLHFPSQSLCQVINVCEQVVRTHSRTTAYERLLPKQREFYLQQKILHELSGHIYLFVDLNEHLFDGEVCAINHFVKLLKDIVVCFLRLRAAGVAQRPLKPHPERPDMKTLSRKHWSAFQNYRCSGFANTSKCRHLLSNKGCPFR", "length": 903, "header": "tr|F1RVD5-1|F1RVD5_PIG Isoform 1 of THAP domain containing 9 OS=Sus scrofa OX=9823 GN=THAP9 PE=4 SV=3 CANONICAL=F1RVD5-1" }, "isoforms": [ { "isoform_ac": "F1RVD5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVD5/entry", "sequence": { "sequence": "MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSQWIRAVNRMDPRSKKIWIPGPGAMLCSKHFQESDFESYGIRRKLKKGAVPSVSLYKVLQGAHLKGKARQKILKQPLPDNSQEVATEDHNYSLKGPLTIGAEKLAEVQQMLQVSRKRLASAKNYRMIKKRKGLRLIDALVEEKLLSEETEYLLRAQFSDFKWELYNWRETAGYSTEMKQFACTLYLCSSKVYDYVRKILKLPHSSILRTWLSRCKPGPGFHSNVFSFLQQKVENGDQLYQYCSLIIKGISLKQQLQWDPSSHQLQGFMDFGLGKLDADEMPLASETVVLMAVGISGHWRTPLGYFFVNRASGYLQAQLLRLTIGKLSDIGVTVLAVTSDATADSVQMAKSLGIRMDGDNMKCTFQHPSSSGQQVAYFFDPCHLLRLVRNAFQNFQSIQFINGTAHWQHLVELVTFQEQELSNIERIPRKLASLKHHILKTNGAAQLFSESMASALECLRSLGLPPFQNCVGTIHFLRLINNLFDIFNSRNYYGKGLKGPLVPKTFNKINHVLIEAKTIFVTLSDSNNNQIIKGKRKLGFLGFLLNAESLQWLYQNYVSPKVTPFPYLLTYKFSQDHLELFLKMLRQVLVASSNPTCMAFQKAYHNLETRHRLQEEVFLGEVSVLDISIARRADLALRTVQQQYDVSVTKTLFHKEDVCQDWSDRLLSEALLDLSDHRRSLTCCAGYIANKLSALLTCEDCIGALYASDLKASKIGSLLCVKKVNGLHFPSQSLCQVINVCEQVVRTHSRTTAYERLLPKQREFYLQQKILHELSGHIYLFVDLNEHLFDGEVCAINHFVKLLKDIVVCFLRLRAAGVAQRPLKPHPERPDMKTLSRKHWSAFQNYRCSGFANTSKCRHLLSNKGCPFR", "length": 903, "header": "tr|F1RVD5-1|F1RVD5_PIG Isoform 1 of THAP domain containing 9 OS=Sus scrofa OX=9823 GN=THAP9 PE=4 SV=3 CANONICAL=F1RVD5-1" }, "locus": { "chromosome": "8", "start_pos": 135420622, "end_pos": 135403629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010123.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010123.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009857.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009857.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVD5", "url": "https://www.uniprot.org/uniprotkb/F1RVD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525594", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525594", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XF82-1", "protein_name": "THAP domain containing 6", "gene_name": "THAP6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTRSCSALGCSARDNGRSRERGISFHQFPVDAAQRREWIRAVNRLDPRSRRAWSPGPGAILCSRHFAEADFERYGLRRKLRRGAVPSRFPLAEAPRGHPRKVPLRSALRSQDHTYSRSGAGPASPAAGPRRLCGPVRELAARRGLPRAVLRVLRALFPDLPRGARHWRRPAEYCPAMRQFVCLLHLRHHAAYEQLRKVFPLPHPASLSNWLSNDAAAPGFSNDMFLQLQEKVERGEQAYCYCALMVQEMSLQKCQEWDRQSQRLTGFIDLGAGSLDADEAPLASEVVVVMAAGISSPWRAPLGYFFVSGVTGCLLAQLLRQAISKLNNIGVTVLAVTSGATACGAETARALGVRINPQRIRCAFHHPPSSAHCIAYFFDVCHALHLIRNTLQYFQKIQWLSDTVQWQHVVELATLQEEKLLGPRSGHPVSKETYQLKVNLAAPLFSEGVADALEHLQKLGLASFQNCGGTVKFLRTMSRLCDVFHGRGPYGSGLKGPLLAGNYNKVSPLFHEAKSFFVTLTDSTGRYIIKSKRRLGFLSFLLNAESLKWLYSNPVLQEGAASPRLLTSAFSLNPLERFLGTLRQTCSAGSGNPTCATFQAAYRKVLAGCSLAPDTLHSTASISSLDLSLSHGTDLTLGSIRSQYSPARGRMLAAGLPCCAGLLLRDSPLSNALTDLSLHKQSITFAAGLVAEQLASNLRCEACVASLFESDRSRLRCGAVLYIKKLHGLSLPSASVHHVSHISEQVLSRHRQLGDDHKNSKLRYLSLEQKIFHELLGQNHLFPTLSEHLLEGELHIDNHYTILVKGIAECYLNIRTNQAQKLNFSYHCSRHKLKRVKGKHLFFSQLGSCWSSQTHAGS", "length": 858 }, "evidence": [ { "id": "F1RVD5", "url": "https://omabrowser.org/oma/group/F1RVD5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MY07-1", "protein_name": "THAP domain containing 9", "gene_name": "THAP9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRMDPRSKKIWIPGPGAMLCSKHFQESDFESYGIRRKLKKGAVPSVSLYKVLQGVHLKGKARQKILKQPLPDNSQEVATEDHNYSLKRPLTIGAEKLAEVQQMLQVSKKRLASAKNYRMIKKRKGLRLIDALIEEKLLTEETECLLRAQFSDFKWELYNWRETAEYSAEMKQFACTLYLCSSKVYDYVRKILKLPHSSILRTWLSKCKPGPGFNSNIFSFLQQKVENGDQRYQSCSLVIKGLSLTQQLQWDPSGHHLQGFMDFGLGTLDADEMPLASETILLMAVGISGHWSTPLGYFFVNRASGYLQAQLLRLTIGRLSDIGITVLAVTSDASAHSVQMAKALGIHLDGDNTKCTFQHPSSSSQQIAYFFDSCHLLKLIRNAFQNFQSIQFINGTAHWQHLVELAALEEQELSHMERIPRKLANLKNHILKTNCAAQVFSESVVRALECLLSLGLPSFQNCVGTIHFLRLINNLFDIFNSRNFYGKGFKGPLLPETFNKINHVLTEAKTIFVTLSDTSNNQILKGKRKLGFLGFLLNAESLKWLYQNYVFPKVMPFPYLLMYKFSQDHLELFLKMLRQVSVTTSNPTCVAFQKAYHNLETRHRLQDEVFLSEVSSLDISIARRTDLALGTVQREYGVSVIESLFYKEDICPDWSDCLLSEALLDLSVRRRNLTSCAGYIANKLSALLTCEDCLSALYASDLKASKIGSLLCVKKENGVHFPSESLCRVINTCERVVRTHSKPTVHEPLLPKQREYYLQQKILYELSGHIYLFVELDEHLFDGEVYAINHFVKLLKNIIICFLKIRAKDVTQYSLKHHSERIELKTLSSKHWSSSQNYRCSSFANTNKFRHLLRNNR", "length": 899 }, "evidence": [ { "id": "F1RVD5", "url": "https://omabrowser.org/oma/group/F1RVD5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9H5L6-1", "protein_name": "DNA transposase THAP9", "gene_name": "THAP9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTRSCSAVGCSTRDTVLSRERGLSFHQFPTDTIQRSKWIRAVNRVDPRSKKIWIPGPGAILCSKHFQESDFESYGIRRKLKKGAVPSVSLYKIPQGVHLKGKARQKILKQPLPDNSQEVATEDHNYSLKTPLTIGAEKLAEVQQMLQVSKKRLISVKNYRMIKKRKGLRLIDALVEEKLLSEETECLLRAQFSDFKWELYNWRETDEYSAEMKQFACTLYLCSSKVYDYVRKILKLPHSSILRTWLSKCQPSPGFNSNIFSFLQRRVENGDQLYQYCSLLIKSMPLKQQLQWDPSSHSLQGFMDFGLGKLDADETPLASETVLLMAVGIFGHWRTPLGYFFVNRASGYLQAQLLRLTIGKLSDIGITVLAVTSDATAHSVQMAKALGIHIDGDDMKCTFQHPSSSSQQIAYFFDSCHLLRLIRNAFQNFQSIQFINGIAHWQHLVELVALEEQELSNMERIPSTLANLKNHVLKVNSATQLFSESVASALEYLLSLDLPPFQNCIGTIHFLRLINNLFDIFNSRNCYGKGLKGPLLPETYSKINHVLIEAKTIFVTLSDTSNNQIIKGKQKLGFLGFLLNAESLKWLYQNYVFPKVMPFPYLLTYKFSHDHLELFLKMLRQVLVTSSSPTCMAFQKAYYNLETRYKFQDEVFLSKVSIFDISIARRKDLALWTVQRQYGVSVTKTVFHEEGICQDWSHCSLSEALLDLSDHRRNLICYAGYVANKLSALLTCEDCITALYASDLKASKIGSLLFVKKKNGLHFPSESLCRVINICERVVRTHSRMAIFELVSKQRELYLQQKILCELSGHINLFVDVNKHLFDGEVCAINHFVKLLKDIIICFLNIRAKNVAQNPLKHHSERTDMKTLSRKHWSSVQDYKCSSFANTSSKFRHLLSNDGYPFK", "length": 903 }, "evidence": [ { "id": "F1RVD5", "url": "https://omabrowser.org/oma/group/F1RVD5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1RVD5", "url": "https://www.uniprot.org/uniprotkb/F1RVD5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RVD5", "url": "https://www.uniprot.org/uniprotkb/F1RVD5" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1RVD5", "url": "https://www.uniprot.org/uniprotkb/F1RVD5" } ], "pmid": "" }, { "name": "transposase activity", "id": "GO:0004803", "url": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVS5-1", "uniprot_ac": "F1RVS5", "uniprot_id": "F1RVS5_PIG", "mass": { "chemical_mass": 19890.0, "monoisotopic_mass": 19890.0 }, "refseq": {}, "gene_names": [ { "name": "TMEM217B", "type": "recommended", "evidence": [ { "id": "F1RVS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVS5" } ] } ], "protein_names": [ { "name": "Transmembrane protein 217B", "type": "synonym", "evidence": [ { "id": "F1RVS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVS5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVS5", "url": "https://www.uniprot.org/uniprotkb/F1RVS5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM217B", "url": "https://www.uniprot.org/uniprotkb/F1RVS5", "locus": { "chromosome": "7", "start_pos": 32817959, "end_pos": 32818471, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001574", "url": "https://www.ensembl.org/id/ENSSSCG00000001574" } ] } } ], "crossref": [ { "id": "F1RVS5", "url": "https://alphafold.ebi.ac.uk/entry/F1RVS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001574", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001574", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34928", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34928", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34928:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34928:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RVS5", "url": "https://www.uniprot.org/uniprotkb/F1RVS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVS5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNDKKFSFMLGVFSLLNTIQFLIFEMNEVRSIGYEDQFSIYKVTNLKLVSWVLTYESSINICLSTITIVLSSVLLGCIHVNNYVGLLCYAVWIITYELLSFTVVLLTYGAIKEQFKELGYLHLVFQISRMLLHFCCLPFLTKHMYTLYKNPRMLSKLGHRRHSSVSTVTSW", "length": 171, "header": "tr|F1RVS5-1|F1RVS5_PIG Isoform 1 of Transmembrane protein 217B OS=Sus scrofa OX=9823 GN=TMEM217B PE=4 SV=3 CANONICAL=F1RVS5-1" }, "isoforms": [ { "isoform_ac": "F1RVS5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVS5/entry", "sequence": { "sequence": "MNDKKFSFMLGVFSLLNTIQFLIFEMNEVRSIGYEDQFSIYKVTNLKLVSWVLTYESSINICLSTITIVLSSVLLGCIHVNNYVGLLCYAVWIITYELLSFTVVLLTYGAIKEQFKELGYLHLVFQISRMLLHFCCLPFLTKHMYTLYKNPRMLSKLGHRRHSSVSTVTSW", "length": 171, "header": "tr|F1RVS5-1|F1RVS5_PIG Isoform 1 of Transmembrane protein 217B OS=Sus scrofa OX=9823 GN=TMEM217B PE=4 SV=3 CANONICAL=F1RVS5-1" }, "locus": { "chromosome": "7", "start_pos": 32818471, "end_pos": 32817959, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001753.3", "url": "https://www.ensembl.org/id/ENSSSCT00000001753.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001709.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001709.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVS5", "url": "https://www.uniprot.org/uniprotkb/F1RVS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVS5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 171, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVS5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVS5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVV5-1", "uniprot_ac": "F1RVV5", "uniprot_id": "F1RVV5_PIG", "mass": { "chemical_mass": 64234.0, "monoisotopic_mass": 64234.0 }, "refseq": { "ac": "XP_020922328", "name": "otopetrin-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922328" }, "gene_names": [ { "name": "OTOP3", "type": "recommended", "evidence": [ { "id": "F1RVV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ] }, { "name": "OTOP3", "type": "synonym", "evidence": [ { "id": "XP_020922328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922328" } ] } ], "protein_names": [ { "name": "Otopetrin 3", "type": "synonym", "evidence": [ { "id": "F1RVV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVV5/entry#names_and_taxonomy" } ] }, { "name": "otopetrin-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020922328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922328" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OTOP3", "url": "https://www.uniprot.org/uniprotkb/F1RVV5", "locus": { "chromosome": "12", "start_pos": 6311696, "end_pos": 6322080, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017220", "url": "https://www.ensembl.org/id/ENSSSCG00000017220" } ] } } ], "crossref": [ { "id": "F1RVV5", "url": "https://alphafold.ebi.ac.uk/entry/F1RVV5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017220", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017220", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515337", "url": "https://www.ncbi.nlm.nih.gov/gene/100515337", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NRVDMGA", "url": "https://omabrowser.org/oma/group/NRVDMGA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21522", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21522", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21522:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21522:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922328", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922328", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVV5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVV5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAPASAPTEALPVVSPEAQEPGKTPAKESQAAMGAEGTKAPAPPVQKSWLVRHFSLLLRRDRQAQKAGQLFSGLLALNVVFLGGAFICSMIFNNVAITLGDVWILLATLKSLSLLWLLYYTAGTTRRPHAVPHQDPHAGPIWVLGSLVLFGSCTICLNIFRVGYDISHSGCKSQLELIFPAIEIIFMGVQTWVLWKHCKDCVQVQTNFTRCGLMLTLATNLLLWLLAVTNDSMHHEIESELNTLVKKFSGNDTNTCLCLNVTMCKVFQKGYLMLYPFSTEYCLICCAVLFVMWKNVGRRLASHVDGHPRTPPFHLHGAIFGPLLGLLVLVAGVCVFVLFQIQASGPAIARQYFTIYYAFYVAVLPAMSLACLAGTAIHGLEERELDTLKNPTRSLDVMLLMGAALGQIGISYFSIVAIVATRPHELLNRLILAYSLLLILQHIAQNLFIIEGLHRRPLWEAAPESLAGKREAEPPRRGSLLELGQDLRRASLAYIHSYSHLNWKRRALKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYRTWFTIVNFGLPLGVFYRMHSVGGLVEVYLGA", "length": 578, "header": "tr|F1RVV5-1|F1RVV5_PIG Isoform 1 of Otopetrin 3 OS=Sus scrofa OX=9823 GN=OTOP3 PE=3 SV=3 CANONICAL=F1RVV5-1" }, "isoforms": [ { "isoform_ac": "F1RVV5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVV5/entry", "sequence": { "sequence": "MPAPASAPTEALPVVSPEAQEPGKTPAKESQAAMGAEGTKAPAPPVQKSWLVRHFSLLLRRDRQAQKAGQLFSGLLALNVVFLGGAFICSMIFNNVAITLGDVWILLATLKSLSLLWLLYYTAGTTRRPHAVPHQDPHAGPIWVLGSLVLFGSCTICLNIFRVGYDISHSGCKSQLELIFPAIEIIFMGVQTWVLWKHCKDCVQVQTNFTRCGLMLTLATNLLLWLLAVTNDSMHHEIESELNTLVKKFSGNDTNTCLCLNVTMCKVFQKGYLMLYPFSTEYCLICCAVLFVMWKNVGRRLASHVDGHPRTPPFHLHGAIFGPLLGLLVLVAGVCVFVLFQIQASGPAIARQYFTIYYAFYVAVLPAMSLACLAGTAIHGLEERELDTLKNPTRSLDVMLLMGAALGQIGISYFSIVAIVATRPHELLNRLILAYSLLLILQHIAQNLFIIEGLHRRPLWEAAPESLAGKREAEPPRRGSLLELGQDLRRASLAYIHSYSHLNWKRRALKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYRTWFTIVNFGLPLGVFYRMHSVGGLVEVYLGA", "length": 578, "header": "tr|F1RVV5-1|F1RVV5_PIG Isoform 1 of Otopetrin 3 OS=Sus scrofa OX=9823 GN=OTOP3 PE=3 SV=3 CANONICAL=F1RVV5-1" }, "locus": { "chromosome": "12", "start_pos": 6321964, "end_pos": 6312217, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018745.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018745.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018243.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018243.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JTK7-1", "protein_name": "Otopetrin 3", "gene_name": "Otop3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQTSAPEPAPMPSSEAETTEAASTYDQANMDVETKHTGPPGAPKQKSWLALHFSLLLRRDRQAQKAGQLFSGLLALNVVFLGGAFICSMIFNKVAVTLGDVWILLAALKVLSLLWLLYYTVGTTRKPHAVLYRDPHAGPVWVRGSLVLFGSCTVCLNVFRMGYDVSHIHCKSEVELIFPAIEIVFMIIQTWVLWKHCKDCVQVQTNFTRCGLMLTLATNLLMWVLAVTNDSMHREIEAELDALMEKFSGNGTNTCMCLNATVCEVFRKGFLMLYPFSTEYCLICCAVLFVMWKNVGRSLAAHSGAHPNRPPFRLHGAIFGPLLGLLALVAGVCVFVLFQIEASGPDIARQYFTLYYAFYVAVLPTMSLACLAGTAIHGLEERELDTLKNPTRSLDVVLLMGAALGQMGIAYFSIVAIVATQPHQLLNQLILAYSLLLILQHITQNLFIIEGLHRRPLWEPVISGVPEKQDIELPRRGSLRELGQDLRRASRAYIHSFSHLNWKRRMLKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYRTWFTIVNFGLPLGVFYRMHSVGGLVEVYLGA", "length": 578 }, "evidence": [ { "id": "F1RVV5", "url": "https://omabrowser.org/oma/group/F1RVV5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AEM0-1", "protein_name": "Otopetrin 3", "gene_name": "OTOP3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGNKASKQKFCHHCNSRSASAPPGTSTIHYEKSWLYRHCSLQQRDRQAQKSGQLFSGLLALNVVFLGSAFISSMIFNHVAITLADVWILLSILKVLCLCWIIYYLLGTSRQPHAVLYRDTHAGPVWIRGSLLLFGTFSILLNVFQIGYSVIQINCKSKVEIVFPSIEILFVATQAFFLWHHSKDCIQVQHNLTRCGLMLTIATNLLLWLLAVTNDSIHMEIESQLQDKQLLRILRLLHYRMLTDSCACPNTTTCKVFQKGYILLYPFNTEYCLICCSVLYVMWKNVGRRISHHHITHIKPKFKLQGVVFGPLLGAAAVIIGICVFMMYQIQATGSAPNYQVFVLYYSYYIVLLPLMCVVAIIGTIIHTLEKRELDTLKNPTRSLDVVLLMGAALGQIAMSYFSIVAIVATNPRDMLNSLILSYSVLLIFQYITQNIFIIDGLQRQPFAAAEAQHTTHAGQLSAVPELPGEGVTTPSSNQERSQTFPSKEEEVSEEHNREAPDQRRVSVLELGQEFRRVSLSYIHTYSHLGWKRKALKEISFFLVLCNIILWIMPTFGAHPVFENGLQKSFYGYSTWFAIVNFGLPLSVFYRMHSVGGLLEVYVSA", "length": 606 }, "evidence": [ { "id": "F1RVV5", "url": "https://omabrowser.org/oma/group/F1RVV5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q7RTS5-1", "protein_name": "Proton channel OTOP3", "gene_name": "OTOP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRGARAAAAQSRWGRASRASVSPGRTIRSAPAVGEAQETEAAPEKENRVDVGAEERAAATRPRQKSWLVRHFSLLLRRDRQAQKAGQLFSGLLALNVVFLGGAFICSMIFNKVAVTLGDVWILLATLKVLSLLWLLYYVASTTRRPHAVLYQDPHAGPLWVRGSLVLFGSCTFCLNIFRVGYDVSHIRCKSQLDLVFSVIEMVFIGVQTWVLWKHCKDCVRVQTNFTRCGLMLTLATNLLLWVLAVTNDSMHREIEAELGILMEKSTGNETNTCLCLNATACEAFRRGFLMLYPFSTEYCLICCAVLFVMWKNVGRHVAPHMGAHPATAPFHLHGAIFGPLLGLLVLLAGVCVFVLFQIEASGPAIACQYFTLYYAFYVAVLPTMSLACLAGTAIHGLEERELDTVKNPTRSLDVVLLMGAALGQMGIAYFSIVAIVAKRPHELLNRLILAYSLLLILQHIAQNLFIIEGLHRRPLWETVPEGLAGKQEAEPPRRGSLLELGQGLQRASLAYIHSYSHLNWKRRALKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYQIWFAIVNFGLPLGVFYRMHSVGGLVEVYLGA", "length": 596 }, "evidence": [ { "id": "F1RVV5", "url": "https://omabrowser.org/oma/group/F1RVV5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80UF9-1", "protein_name": "Proton channel OTOP3", "gene_name": "Otop3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQTSAPAEPAPMPSPEAKTTEGASSYDQADMETKHAGSPCPPKQKSWLARHFSLLLRRDRQAQKAGQLFSGLLALNVVFLGGAFICSMIFNKVSVTLGDVWILLAALKVLSLLWLLYYTVGTTRKPHAVLYRDPHAGPIWVRGSLVLFGSCTVCLNIFRMGYDVSHIHCKSEVELIFPAIEIVFMIIQTWVLWRHCKDCVQVQTNFTRCGLMLTLATNLLMWVLAVTNDSMHREIEAELDALMEKFSGNGTNTCMCLNTTVCEVFRKGYLMLYPFSTEYCLICCAVLFVMWKNVSRSLAAHTGAHPNRSPFRLHGTIFGPLLGLLALVAGVCVFVLFQIEASGPDIARQYFTLYYAFYVAVLPTMSLACLAGTAIHGLEERELDTLKNPTRSLDVVLLMGAALGQMGIAYFSIVAIVATQPHELLNQLILAYSLLLILQHITQNLFIIEGLHRRPLWEPAVSGVMEKQDVELPRRGSLRELGQDLRRASRAYIHSFSHLNWKRRMLKEISLFLILCNITLWMMPAFGIHPEFENGLEKDFYGYRTWFTIVNFGLPLGVFYRMHSVGGLVEVYLGA", "length": 577 }, "evidence": [ { "id": "F1RVV5", "url": "https://omabrowser.org/oma/group/F1RVV5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ], "pmid": "" }, { "name": "proton channel activity", "id": "GO:0015252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015252", "evidence": [ { "database": "UniProtKB", "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proton transmembrane transport", "id": "GO:1902600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902600", "evidence": [ { "database": "UniProtKB", "id": "F1RVV5", "url": "https://www.uniprot.org/uniprotkb/F1RVV5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVV5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 578, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVV5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVV5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 }, { "start_pos": 231, "end_pos": 233 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 520, "end_pos": 522 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVV7-1", "uniprot_ac": "F1RVV7", "uniprot_id": "F1RVV7_PIG", "mass": { "chemical_mass": 53124.0, "monoisotopic_mass": 53124.0 }, "refseq": { "ac": "XP_003482997", "name": "cerebellar degeneration-related protein 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482997" }, "gene_names": [ { "name": "CDR2L", "type": "recommended", "evidence": [ { "id": "F1RVV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVV7" } ] }, { "name": "CDR2L", "type": "synonym", "evidence": [ { "id": "XP_003482997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482997" } ] } ], "protein_names": [ { "name": "Cerebellar deration related protein 2 like", "type": "synonym", "evidence": [ { "id": "F1RVV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVV7/entry#names_and_taxonomy" } ] }, { "name": "cerebellar degeneration-related protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_003482997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482997" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVV7", "url": "https://www.uniprot.org/uniprotkb/F1RVV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDR2L", "url": "https://www.uniprot.org/uniprotkb/F1RVV7", "locus": { "chromosome": "12", "start_pos": 6270575, "end_pos": 6282422, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017218", "url": "https://www.ensembl.org/id/ENSSSCG00000017218" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017218", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017218", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511219", "url": "https://www.ncbi.nlm.nih.gov/gene/100511219", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511219", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511219", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RVV7", "url": "https://www.orthodb.org/?gene=F1RVV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19232:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19232:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482997", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RVV7", "url": "https://www.uniprot.org/uniprotkb/F1RVV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RVV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRAARMEDFTAEEEEPWYDQQDLEQDLHLAAELGKTLLERNKELEESLQQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLAARDLELTNQKLVLESKAAQQKIHGLSETIERLQTQVEELQAQVEQLRGLEQLRVRREKRERRRTIHTFPCLKELCTSPRCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKERAEREYAAVLQEYSELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLGREDHLAEALLAPLTQAPEADDPQPGSGDDSGTQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRLAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGDEGQGEAKAGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFSRIQKTKADINATKVKTHSSK", "length": 465, "header": "tr|F1RVV7-1|F1RVV7_PIG Isoform 1 of Cerebellar deration related protein 2 like OS=Sus scrofa OX=9823 GN=CDR2L PE=3 SV=2 CANONICAL=F1RVV7-1" }, "isoforms": [ { "isoform_ac": "F1RVV7-1", "url": "https://www.uniprot.org/uniprotkb/F1RVV7/entry", "sequence": { "sequence": "MRRAARMEDFTAEEEEPWYDQQDLEQDLHLAAELGKTLLERNKELEESLQQMYSTNEEQVQEIEYLTKQLDTLRHVNEQHAKVYEQLDLAARDLELTNQKLVLESKAAQQKIHGLSETIERLQTQVEELQAQVEQLRGLEQLRVRREKRERRRTIHTFPCLKELCTSPRCEDAFRLHSSSLELGPRPLEQENERLQTLVGVLRSQVSQERQRKERAEREYAAVLQEYSELERQLCEMEGCRLRVQELEAELLELQQMKQAKTYLLGREDHLAEALLAPLTQAPEADDPQPGSGDDSGTQDGVSSPAASPGHVVRKSCSDTALNAIVAKDPASRLAGNLTLHANSVRKRGMSILREVDEQYHALLEKYEELLSKCRQHGAGVRHAGVQTSRPISRDSSWRDLRGGDEGQGEAKAGEKSLSQHVEAVDKRLEQSQPEYKALFKEIFSRIQKTKADINATKVKTHSSK", "length": 465, "header": "tr|F1RVV7-1|F1RVV7_PIG Isoform 1 of Cerebellar deration related protein 2 like OS=Sus scrofa OX=9823 GN=CDR2L PE=3 SV=2 CANONICAL=F1RVV7-1" }, "locus": { "chromosome": "12", "start_pos": 6282038, "end_pos": 6272217, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018743.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018743.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018241.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018241.2" } ] } } ], 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{ "uniprot_canonical_ac": "D4ADR7-1", "protein_name": "Cysteine rich tail 1", "gene_name": "Cysrt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDPHEMVVKNPYVHLSIPRAHLRSDSGQQSEEVPSSSSSSETQPLPPGACAPEPVGLLHTVEAPGPKAIKGAKGEQCQQTWQSPCNPYSSGQRPSGLTYAGLPPVGRGDDIAHHCCCCPCCSCCHCPRFCRCHSCCCVVS", "length": 140 }, "evidence": [ { "id": "F1RVW1", "url": "https://omabrowser.org/oma/group/F1RVW1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D1E4-1", "protein_name": "Cysteine-rich tail protein 1", "gene_name": "Cysrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPHEMVVKNPYAHISIPRAHLRSDLGQQLEEVPSSSSSSETQPLPAGTCIPEPVGLLQTTEAPGPKGIKGIKGTAPEHGQQTWQSPCNPYSSGQRPSGLTYAGLPPVGRGDDIAHHCCCCPCCSCCHCPRFCRCHSCCVIS", "length": 142 }, "evidence": [ { "id": "F1RVW1", "url": "https://omabrowser.org/oma/group/F1RVW1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVW2-1", "uniprot_ac": "F1RVW2", "uniprot_id": "F1RVW2_PIG", "mass": { "chemical_mass": 17448.0, "monoisotopic_mass": 17448.0 }, "refseq": {}, "gene_names": [ { "name": "RNF224", "type": "recommended", "evidence": [ { "id": "F1RVW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVW2" } ] } ], "protein_names": [ { "name": "Ring finger protein 224", "type": "synonym", "evidence": [ { "id": "F1RVW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVW2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVW2", "url": "https://www.uniprot.org/uniprotkb/F1RVW2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF224", "url": "https://www.uniprot.org/uniprotkb/F1RVW2", "locus": {} } ], "crossref": [ { "id": "F1RVW2", "url": "https://alphafold.ebi.ac.uk/entry/F1RVW2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005856", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005856", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47454:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47454:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RVW2", "url": "https://www.uniprot.org/uniprotkb/F1RVW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVW2-1", "url": "https://www.uniprot.org/uniprotkb/F1RVW2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQDATARGSPGLPRGHSRWPPARCIICYSAYDLAGHLPRRLYCGHTFCQACVRRLDAPAHEQRWILCPQCRQSTPTPRGGVAMLDLDLAAFLAIKAEREPSRTEPQSPMPLKSGSATITQQPGQLCPPLGPQPRFPQPRRCCWGCGSFCWDPLGDPQV", "length": 158, "header": "tr|F1RVW2-1|F1RVW2_PIG Isoform 1 of Ring finger protein 224 OS=Sus scrofa OX=9823 GN=RNF224 PE=4 SV=3 CANONICAL=F1RVW2-1" }, "isoforms": [ { "isoform_ac": "F1RVW2-1", "url": "https://www.uniprot.org/uniprotkb/F1RVW2/entry", "sequence": { "sequence": "MQDATARGSPGLPRGHSRWPPARCIICYSAYDLAGHLPRRLYCGHTFCQACVRRLDAPAHEQRWILCPQCRQSTPTPRGGVAMLDLDLAAFLAIKAEREPSRTEPQSPMPLKSGSATITQQPGQLCPPLGPQPRFPQPRRCCWGCGSFCWDPLGDPQV", "length": 158, "header": "tr|F1RVW2-1|F1RVW2_PIG Isoform 1 of Ring finger protein 224 OS=Sus scrofa OX=9823 GN=RNF224 PE=4 SV=3 CANONICAL=F1RVW2-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 679941, "end_pos": 679197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006435.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006435.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006266.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006266.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVW2", "url": "https://www.uniprot.org/uniprotkb/F1RVW2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RVW2", "url": "https://www.uniprot.org/uniprotkb/F1RVW2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVW2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVW2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVW2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RVW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVW2" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 71, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVW3", "url": "https://www.uniprot.org/uniprotkb/F1RVW3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EXD3", "url": "https://www.uniprot.org/uniprotkb/F1RVW3", "locus": {} } ], "crossref": [ { "id": "F1RVW3", "url": "https://alphafold.ebi.ac.uk/entry/F1RVW3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005855", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005855", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06146", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06146", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517075", "url": "https://www.ncbi.nlm.nih.gov/gene/100517075", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037432", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037432", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47765", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47765", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47765:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47765:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013844732", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013844732", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A4S5", "url": "https://www.uniprot.org/uniprotkb/A0A287A4S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4S5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVW3", "url": "https://www.uniprot.org/uniprotkb/F1RVW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVW3-1", "url": "https://www.uniprot.org/uniprotkb/F1RVW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPRAPADDPAAGDATAGDATAGDPAAGDTTAGDPTAGDPTAGDATAGDPAAGDATAGDPTAGDATAGDPAAGDATAGDPAAGDATAGDPAGDPVSGCGPLLFLQALQRLWSTRQLRQLQEEAWRGFAALADPLAGLLDMLDGSRGWRGRGPSLEAWVARELKRWLQARPHPGPPQGGPGLRQLQARAVKILVESPPALVEPLVSIFQLQDADRSPLLAHVHRLRQEGRFKEAVVLSTKLRLQPHLDVEEMSTPLLLQDKLGLVERYVDGFPGLQRRLLSLLDSWCRPGFDVHVVARRHPQAAWRPDRLSPRVLSRQVLRLRERFGLDPALCPHVVTQQRLASLRYLCYKRLVERSLSQESWVEHVHGLVGQNEWLQEQLLQLLASHDDAAVVAQCALDLSLPEGRLPATVVTELSRLRLQGSAAEAPSEGRTDDCYQLPIAREDIRFLASWEDLARHEAELLQPGQVVSVDLEWRPSFGVGGRPQASLMQVAVEGRVFLLDLPQLLSPARGQEPQAFSQLVSRLLADPSITKLGYGMAGDLRSLGASCPALAQAQKQLRGSLDLLQVHKQLRVVDAPAPGVDGAAGPRGLSLLVQQVLGKPLDKTQQLSNWDRRPLGEEQLVYAAADAYCLLEVYWALCREPARFHLSGDLGRSLRPGRSEKPPLPQQALAYPQQVLEVKEAAPEVQARAFRVVCDSMLQGLARRLRCLGVDVLVLGTGEDHRRAAEVARQEGRIVLTSGLPYHKLQAQLGAGRCLAVDCSLKAQQQAKAVIRHFNVRVTQDDIFSRCQACNCDQYLKVSKDMMKQLVRLSGHREGPGRTGEEAAQSEDELETGSAPEEPPGPCTYDPPCRWLEEADLQTRVPATLGSGAQLQLSGVPAGVLRRPGLRHFYCCTGCGKVFWEGSHLRRVAANFRDILQMAPGIPEPSQALGPAGSPS", "length": 938, "header": "tr|F1RVW3-1|F1RVW3_PIG Isoform 1 of Exonuclease 3'-5' domain containing 3 OS=Sus scrofa OX=9823 GN=EXD3 PE=4 SV=4 CANONICAL=F1RVW3-1" }, "isoforms": [ { "isoform_ac": "A0A287A4S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4S5/entry", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF10629", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RVX7", "url": "https://www.uniprot.org/uniprotkb/F1RVX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVX7-1", "url": "https://www.uniprot.org/uniprotkb/F1RVX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTTQKHNLFPPEPHYIPGYAGFYPQLRYQVGDTYGRTTAQLLTDPSVRKSPCSVLSPIAKPKFIEDFSKSKPPLVPCRDLTEPYLPHYTGRKPYKNFEVLGRFPPQGVDAQGPLEAEKVAWPAPLPAGFMPYPPYPPCPPGRKGDSRDLGHPGLRLALGEEGWKSTTPAHEAPGQYQLYHCRQDKYPPPGRQQETLDVGRLHGLPQLDHPNLIQRKAISGYAGFIPRFAWVMGMNYHDGLMQAMDEFDKSQFLLRNPICALGERLPRTHWPSNAIYNSQGLRPFYMGFIPSAQDNYALTFGNSTRKAYQKEMERRKQPL", "length": 320, "header": "tr|F1RVX7-1|F1RVX7_PIG Isoform 1 of Ciliary microtubule inner protein 2A OS=Sus scrofa OX=9823 GN=CIMIP2A PE=3 SV=1 CANONICAL=F1RVX7-1" }, "isoforms": [ { "isoform_ac": "F1RVX7-1", "url": "https://www.uniprot.org/uniprotkb/F1RVX7/entry", "sequence": { "sequence": "MTTTQKHNLFPPEPHYIPGYAGFYPQLRYQVGDTYGRTTAQLLTDPSVRKSPCSVLSPIAKPKFIEDFSKSKPPLVPCRDLTEPYLPHYTGRKPYKNFEVLGRFPPQGVDAQGPLEAEKVAWPAPLPAGFMPYPPYPPCPPGRKGDSRDLGHPGLRLALGEEGWKSTTPAHEAPGQYQLYHCRQDKYPPPGRQQETLDVGRLHGLPQLDHPNLIQRKAISGYAGFIPRFAWVMGMNYHDGLMQAMDEFDKSQFLLRNPICALGERLPRTHWPSNAIYNSQGLRPFYMGFIPSAQDNYALTFGNSTRKAYQKEMERRKQPL", "length": 320, "header": "tr|F1RVX7-1|F1RVX7_PIG Isoform 1 of Ciliary microtubule inner protein 2A OS=Sus scrofa OX=9823 GN=CIMIP2A PE=3 SV=1 CANONICAL=F1RVX7-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 665659, "end_pos": 662301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006427.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006427.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006258.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006258.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVX7", "url": "https://www.uniprot.org/uniprotkb/F1RVX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3IG45-1", "protein_name": "Protein FAM166A", "gene_name": "Fam166a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTATQKHNLFTPEPHYIPGYAGFYPQLRYQVGNTYGRTTAQLLTDPSVQKSPCSVLSPMSKPKFIEDFSKSKPPWIPCRDLTEPYIPHYTSLKPHKNFEILGQVPRQVDTQGPPQVENICREVPMSADFLPYPPYPPFPPGRKGEARDLGHPGLLLAYGEEAWKNAAPLKETPGQYQLYHYRRDECLPPHPPQETLDVGRFQRLPQLDHPNLIQRKAISGYAGFVPRFAWVMGMNYRDGVTQAMDEFDKNQFTFRNPVCALGERLPKTHWPNNTIYRSQGLIPFYMGFIPSMQDNYALTFGNSTRKAYQKELERRGHML", "length": 319 }, "evidence": [ { "id": "F1RVX7", "url": "https://omabrowser.org/oma/group/F1RVX7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3X6E2-1", "protein_name": "Ciliary microtubule inner protein 2A", "gene_name": "CIMIP2A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"MTATQKHNLFTPEPHYIPGYAGFYPQLRYQVGNTYGRTTAQLLTDPSVQKSPCSVLSPMTKPKFIEDFSKSKPPWIPCRDLREPYIPHYTSLKPYKNFEILGQLPRQDVDTQGPPQVENRQGPLTAGFMPYPPYPACPPGRKGEARDLGHPGLLLAYGEEAWKDAAPLQDTPGKNNQLYHCRRDEYLPPHPPQETLDVGRFQRLPQLDHPNLIQRKAISGYAGFVPRFAWVMGMNYRDGVTQAMDDFDKNQFVFRHPVCALGERLPRTHWPNTTIYRSQGLIPFYMGFIPSMQDNYALTFGNSTRRAYQKELDRRSHTL", "length": 319 }, "evidence": [ { "id": "F1RVX7", "url": "https://omabrowser.org/oma/group/F1RVX7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1RVX7", "url": "https://www.uniprot.org/uniprotkb/F1RVX7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1RVX7", "url": "https://www.uniprot.org/uniprotkb/F1RVX7" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1RVX7", "url": "https://www.uniprot.org/uniprotkb/F1RVX7" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "F1RVX7", "url": "https://www.uniprot.org/uniprotkb/F1RVX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVX7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 320, "overlap": "1.0", "method": 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"TMNFDQKAVKFLANFHIYGGKHWTHGPLRQMTLLPSLRPGAAVLLSALELELGAAWGERWPPGVQELPAGPRMHMGLLSEPPPACAWTQKEPLLERRSPVGTDMDVPGPARYQGPDASIRSSFPHPYFSIGRKHPPHEGGGRRAWQTMWFQSESPFTQKADFNQEQKWPSPADYQPLSPPAGPAFSFGGHPGSRTPRARALPGQLQARGVGPWAQRPLQPPPPAPRDETGPSPNSYNILPGCRLRSPSPPAFSMSRSPLLASWVGSSCTPGPTAYDVEDRYSTRFPWAPRVVIQGVRRPKRHDTGPFCTL", "length": 310, "header": "tr|F1RVX8-1|F1RVX8_PIG Isoform 1 of Sperm-tail PG-rich repeat containing 3 OS=Sus scrofa OX=9823 GN=STPG3 PE=4 SV=4 CANONICAL=F1RVX8-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 660048, "end_pos": 658674, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006426.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006426.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006257.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006257.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 273, "start_aa": "Thr", "end_pos": 273, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr273", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVX8", "url": "https://www.uniprot.org/uniprotkb/F1RVX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1RVX8", "url": "https://www.uniprot.org/uniprotkb/F1RVX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVX8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 310, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVX8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVX8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 273 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVY0-1", "uniprot_ac": "F1RVY0", "uniprot_id": "F1RVY0_PIG", "mass": { "chemical_mass": 45907.0, "monoisotopic_mass": 45907.0 }, "refseq": { "ac": "XP_003122389", "name": "torsin-4A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122389" }, "gene_names": [ { "name": "TOR4A", "type": "recommended", "evidence": [ { "id": "F1RVY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ] }, { "name": "TOR4A", "type": "synonym", "evidence": [ { "id": "XP_003122389", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122389" } ] } ], "protein_names": [ { "name": "Torsin-4A", "type": "recommended", "evidence": [ { "id": "F1RVY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY0/entry#names_and_taxonomy" } ] }, { "name": "Torsin family 4 member A", "type": "synonym", "evidence": [ { "id": "F1RVY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY0/entry#names_and_taxonomy" } ] }, { "name": "torsin-4A", "type": "synonym", "evidence": [ { "id": "XP_003122389", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122389" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TOR4A", "url": "https://www.uniprot.org/uniprotkb/F1RVY0", "locus": {} } ], "crossref": [ { "id": "F1RVY0", "url": "https://alphafold.ebi.ac.uk/entry/F1RVY0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005845", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005845", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514387", "url": "https://www.ncbi.nlm.nih.gov/gene/100514387", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514387", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514387", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFAITGC", "url": "https://omabrowser.org/oma/group/EFAITGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVY0", "url": "https://www.orthodb.org/?gene=F1RVY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10760", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10760", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10760:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10760:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06309", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06309", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003122389", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122389", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVY0-1", "url": "https://www.uniprot.org/uniprotkb/F1RVY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRGQPSPEPAAAAPARGPNVIAPVRAVVRLRRRVCLLRTRRLPTPGAGPDFGPGAPRANLHQPQFFTFEGPAELSSRAPRKRRRRSRVVLYPETSRKYRPQAERRSRAQRCLLLLVAIVGFQVLNAIENLDDNALRYDLDGLEKALQRAVFGQPSAVGRIVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHFRAVLEDSALVLQYDARHHCPDPRAAQDCREELAQRVADVVARAEAEEKTPLLVLDEVELLPQALLDELHGFLQPQRSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALALRPDGAHGARAAAMAAQAEEELRVRLQALLVREHPLWQAAAIVPFLLLDKRDVVNCFRDEMAGEGFFPEQAHAELLAARLSYYRVAGREFAVTGCKQVVATVNLL", "length": 415, "header": "tr|F1RVY0-1|F1RVY0_PIG Isoform 1 of Torsin-4A OS=Sus scrofa OX=9823 GN=TOR4A PE=3 SV=3 CANONICAL=F1RVY0-1" }, "isoforms": [ { "isoform_ac": "F1RVY0-1", "url": "https://www.uniprot.org/uniprotkb/F1RVY0/entry", "sequence": { "sequence": "MDRGQPSPEPAAAAPARGPNVIAPVRAVVRLRRRVCLLRTRRLPTPGAGPDFGPGAPRANLHQPQFFTFEGPAELSSRAPRKRRRRSRVVLYPETSRKYRPQAERRSRAQRCLLLLVAIVGFQVLNAIENLDDNALRYDLDGLEKALQRAVFGQPSAVGRIVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHFRAVLEDSALVLQYDARHHCPDPRAAQDCREELAQRVADVVARAEAEEKTPLLVLDEVELLPQALLDELHGFLQPQRSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALALRPDGAHGARAAAMAAQAEEELRVRLQALLVREHPLWQAAAIVPFLLLDKRDVVNCFRDEMAGEGFFPEQAHAELLAARLSYYRVAGREFAVTGCKQVVATVNLL", "length": 415, "header": "tr|F1RVY0-1|F1RVY0_PIG Isoform 1 of Torsin-4A OS=Sus scrofa OX=9823 GN=TOR4A PE=3 SV=3 CANONICAL=F1RVY0-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 643867, "end_pos": 642623, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006424.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006424.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006255.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006255.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514387", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514387", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZG57-1", "protein_name": "Torsin-4A", "gene_name": "Tor4a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDRGHPSLEPQAKGPCVIAPVRAVLRLRRRVCVLRKRRLLQTGTEPSVGTGTLGSSASLGTLRADLDQPKFFTFDSLTELSSRTPRKRRRRSRVVLYPETSRKCRPRTERQSRAQRCLLLLVAIVGFQVLNAIENLDDNAQRYDLDGLEKALQRSVFGQPAAVSRIMALLRDYLATHVHSHPLLLALHGPSGVGKSHVGRLLARHFRAVLEDGALVLQYHARHHCPELRPVQDCRKELAQRVADVVAQAEAEEKTPLLVLDEAELLPPALLDELHDLLQPQRSHHFHNAIYVLLSGAGGIEITHFVLQNASRMLPSLRHSVGRTQTEESPALEELQTSLRELLAREHPLWHTAAIVPFLLLDKPDVVNCFREEMAGEGFFPEQAQAEHLAEQLSYYHVAGHEFAITGCKQVVAKVNLLQHKPAHAGHESVGPGV", "length": 434 }, "evidence": [ { "id": "F1RVY0", "url": "https://omabrowser.org/oma/group/F1RVY0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NLT2-1", "protein_name": "Torsin family 4 member A", "gene_name": "TOR4A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDGELLGTEVDGEAPTAMGDVGGEASCAEGDAKGEVSCAEVGGELPTAMGDAAEEASCAESGAKEEGPYADGHVEGEMGCSDSDGEGELRCATTDVKEEASCSESEGEEVPDAEIPAASKRVSFISSPLRAIVRLKQRYRVQKKGRLHFELPQEKSSEPVHARVLQRQFSLNRSGLYGSSKSFFNQSGFKTSQYFTFDTSVEEWAMSKPRRKKKRRKSRVVLYPDKTKRYLPAEEKSNAKRCLLLLIVIIFFQILNAIENLDDNLQKYDLDGLEKTMHREVFGQKLAVESIMQLLKDYLATHIHNKPLVLSLNGPTGVGKSHVGWLLAKHFRSVMDNDFVLQYFVMHHCPSGAAPLTCETDLSKKISDMVTRAEIEEKIPLFILDEVELMSPVLLDTLSRFFEPNQTNEFLNAIYILISNIGGGEITKFVIQNASAELLQQRSGAEELLSVIQPVLTHTHPLWKAADVVPFVLLERSHVIDCFLEEMRREGLYPEQSHVERLASQLSYYTTGDKQFSRLGCKQVVAKVNLL", "length": 531 }, "evidence": [ { "id": "F1RVY0", "url": "https://omabrowser.org/oma/group/F1RVY0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3X7J5-1", "protein_name": "Torsin-4A", "gene_name": "TOR4A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDRGQSSPEPSAPVAPSPSVIAPVRAVVRLRHQVHLLRKRRPPSPAVAPDPGAAALRVPREQPQFFTFDGPAERASRPARKRRRRSRLVLYPETSRKFGPRAERQSRAQRCLLLLVAIVGFQVLNAIENLDDNALRYDLDGLEKTLQRAVFGQPAAVGRLVALLRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHFRAVLEDGALVLQYHTRHHCPAPRAATGCREELARRVADVLARAEAEEKTPLLVLDDAELLPPALLDELHGLLQPQRPPRFHNAVYVLLSGAGGAEVTRFVLQNASRAGRADGAEELRAAEEELRASLHALLVRQHPLWEAAAIVPFLLLDKRDVVNCFRDEMAGEGFFPEQARAELLAAQLSYYRVAGREFAVNGCKQVVAAVNLL", "length": 406 }, "evidence": [ { "id": "F1RVY0", "url": "https://omabrowser.org/oma/group/F1RVY0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q568B8-1", "protein_name": "Torsin-4A", "gene_name": "tor4a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGEQDPSDRLRGDQLKEPNQNGKGSFSQFSSSVRAMVRIRMKYQAIKKRRMEIASATPQIFTSPRSTSPKVFTFDNLHEPVNSNPASPRKRKKKRKGRVLYPTSSLRAVPTKESSRAKNCLYLLCIIVFLQVYNAIENLDDHVLKYDLEGLEKTLKREVFGQQEVAEGLLGHLQDYLSTYVHNKPLVLSFHGPTGVGKSHVGRLLAQHFRSVVGEELVMQYFVLHHCPTDDDIPVCTKSLESHISEMVSQGEEEEKIPVFIFDEVEHMPRQLMDTLRELIQPQNSNKYLNAIYILISNLGHEDITKFVLHNSSIAISGRLSLTQELTPWLRNYLQEHHGLFLDAEYLPFMLLEKSHVMDCFIDEMSREGFYPDRSHVERLAEELSYYIVGEREFSHTGCRQVVAKVNLL", "length": 409 }, "evidence": [ { "id": "F1RVY0", "url": "https://omabrowser.org/oma/group/F1RVY0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BH02-1", "protein_name": "Torsin-4A", "gene_name": "Tor4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"MDRGQPSLEPAAAAPRASGRCVIAPVRAVLRLRRRVCVLRKRRLLQPGGGPDVGTGAPRPGCSPRAPRADLDQPKFFTFDSPAELPSRTPRKKRRRSRLVLYPETSRKYRPRVEHRSRAQRCLLLLVAIVGFQVLNAIENLDDNAQRYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRLLARHFRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLDDVELMPRPLLDELHGFLQPQRSHHFHNAIYVLLSGAGGAEVTRFVLQNASRALPLRPDGFRSAEAAAAQAEEDLRASLLAVLSREHPLWQAAAIVPFLLLDKRDVVSCFRDEMAGEGFFPDQARAENLAAQLSFYRVAGREFAVTGCKQVVATVNLL", "length": 423 }, "evidence": [ { "id": "F1RVY0", "url": "https://omabrowser.org/oma/group/F1RVY0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "pmid": "" }, { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RVY0", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVY0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 415, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVY0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVY0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RVY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY0" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 176, "end_pos": 346, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 304, "end_pos": 306 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVY3-1", "uniprot_ac": "F1RVY3", "uniprot_id": "F1RVY3_PIG", "mass": { "chemical_mass": 13668.0, "monoisotopic_mass": 13668.0 }, "refseq": { "ac": "XP_003122381", "name": "transmembrane protein 141", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122381" }, "gene_names": [ { "name": "TMEM141", "type": "recommended", "evidence": [ { "id": "F1RVY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY3" } ] }, { "name": "TMEM141", "type": "synonym", "evidence": [ { "id": "XP_003122381", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122381" } ] } ], "protein_names": [ { "name": "Transmembrane protein 141", "type": "synonym", "evidence": [ { "id": "F1RVY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY3/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 141", "type": "synonym", "evidence": [ { "id": "XP_003122381", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122381" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVY3", "url": "https://www.uniprot.org/uniprotkb/F1RVY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM141", "url": "https://www.uniprot.org/uniprotkb/F1RVY3", "locus": {} } ], "crossref": [ { "id": "F1RVY3", "url": "https://alphafold.ebi.ac.uk/entry/F1RVY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005842", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005842", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512883", "url": "https://www.ncbi.nlm.nih.gov/gene/100512883", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026788", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026788", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512883", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512883", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQSNAFM", "url": "https://omabrowser.org/oma/group/CQSNAFM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVY3", "url": "https://www.orthodb.org/?gene=F1RVY3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47229", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47229", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47229:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47229:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15110", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15110", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122381", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RVY3", "url": "https://www.uniprot.org/uniprotkb/F1RVY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVY3-1", "url": "https://www.uniprot.org/uniprotkb/F1RVY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNLGLSRVDDAVADKHPGLGEYAACQSNAFMKGIFTFVTGTGATFGLQMLVQKKFPYPFQWNLLVAVVAGSVASYWVTRVESQKCSNLWLFLETGKLPKDVGTDRHDQESSSRGHRRHGAGEF", "length": 124, "header": "tr|F1RVY3-1|F1RVY3_PIG Isoform 1 of Transmembrane protein 141 OS=Sus scrofa OX=9823 GN=TMEM141 PE=4 SV=1 CANONICAL=F1RVY3-1" }, "isoforms": [ { "isoform_ac": "F1RVY3-1", "url": "https://www.uniprot.org/uniprotkb/F1RVY3/entry", "sequence": { "sequence": "MVNLGLSRVDDAVADKHPGLGEYAACQSNAFMKGIFTFVTGTGATFGLQMLVQKKFPYPFQWNLLVAVVAGSVASYWVTRVESQKCSNLWLFLETGKLPKDVGTDRHDQESSSRGHRRHGAGEF", "length": 124, "header": "tr|F1RVY3-1|F1RVY3_PIG Isoform 1 of Transmembrane protein 141 OS=Sus scrofa OX=9823 GN=TMEM141 PE=4 SV=1 CANONICAL=F1RVY3-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1021346, "end_pos": 1019854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006421.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006421.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006252.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006252.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVY3", "url": "https://www.uniprot.org/uniprotkb/F1RVY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512883", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512883", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QJC6-1", "protein_name": "Transmembrane protein 141", "gene_name": "Tmem141", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVNLGLSRVDDAVAAKHPGLEEYAVCQSNAFMKGVFTFVTGTGATFGLQLFIKRKFPYPVQWNFLVSAVVGSVASYKVTRMESQKCRDLWLFLETGKLPKDMSTDHQD", "length": 108 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A2AJB2-1", "protein_name": "Transmembrane protein 141", "gene_name": "Tmem141", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNLGLSRVDDAVAARHPGLEEFAACQSHAFMKGVFTFVTGTGATFGLLMFIKRKFPYPVQWSFLVSAIAGSVASYRVTSMECQKCSNLWLFLETGQLPKDISTDPHD", "length": 108 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZK53-1", "protein_name": "Transmembrane protein 141", "gene_name": "Tmem141", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNLGLSRVDDAVAAKHPGLEEYAACQSNAFMKGVFTFVTGTGVTFGLQMFIKRKFPYPVQWGFLVSAGKRKGEEGGLSAMSAYTLLARTKPHGASAVRRLRKAALL", "length": 107 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1JIX4-1", "protein_name": "Transmembrane protein 141", "gene_name": "Dmel\\CG42488", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNDIKRLKDQQREKHPGFDGYMDCMTRSLFTGLATFCLSFSGTYFAQKIVQSKIRYPIKYNILISSLVATGVSYQITSTRTKACQAAWMAFEDKHSVLKEKTF", "length": 103 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q0D285-1", "protein_name": "Transmembrane protein 141", "gene_name": "tmem141", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVNIGLSKVDDAIVAKHPGLQQYVACQSYAFMKGTASFILGTVGIFFGQRALQKIIKYPLQWNLFVSIVSSSVFSYSVTRWETMKCSDVWLFLETGNIPDRNSDKEEPETSADSTTTQHEDVLE", "length": 124 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3SZU9-1", "protein_name": "Transmembrane protein 141", "gene_name": "TMEM141", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVNLGLSRVDDAVASKHPGLGEYAACQSNAFVKGVSTFVTGTGATFGLQMLVQRKLPYPFQWKVLLAVVAGSVASYWVTRVESQKCSNLWLFLETGQLPKDMGTDRRS", "length": 108 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96I45-1", "protein_name": "Transmembrane protein 141", "gene_name": "TMEM141", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNLGLSRVDDAVAAKHPGLGEYAACQSHAFMKGVFTFVTGTGMAFGLQMFIQRKFPYPLQWSLLVAVVAGSVVSYGVTRVESEKCNNLWLFLETGQLPKDRSTDQRS", "length": 108 }, "evidence": [ { "id": "F1RVY3", "url": "https://omabrowser.org/oma/group/F1RVY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RVY3", "url": "https://www.uniprot.org/uniprotkb/F1RVY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 124, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVY3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": 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"sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVY7-1", "uniprot_ac": "F1RVY7", "uniprot_id": "F1RVY7_PIG", "mass": { "chemical_mass": 42092.0, "monoisotopic_mass": 42092.0 }, "refseq": { "ac": "XP_003131241", "name": "galactokinase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131241" }, "gene_names": [ { "name": "GALK1", "type": "recommended", "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ] }, { "name": "GALK1", "type": "synonym", "evidence": [ { "id": "XP_003131241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131241" } ] } ], "protein_names": [ { "name": "Galactokinase", "type": "recommended", "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7/entry#names_and_taxonomy" } ] }, { "name": "2.7.1.6", "type": "synonym", "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7/entry#names_and_taxonomy" } ] }, { "name": "Galactose kinase", "type": "synonym", "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7/entry#names_and_taxonomy" } ] }, { "name": "galactokinase", "type": "synonym", "evidence": [ { "id": "XP_003131241", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131241" } ] } ], "function": [ { "annotation": "Catalyzes the transfer of a phosphate from ATP to alpha-D-galactose and participates in the first committed step in the catabolism of galactose.", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7#function" }, { "database": "UniProtKB", "id": "ARBA00055336", "url": "https://www.uniprot.org/uniprotkb/ARBA00055336#function" }, { "database": "UniProtKB", "id": "A0A5G2QDU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GALK1", "url": "https://www.uniprot.org/uniprotkb/F1RVY7", "locus": { "chromosome": "12", "start_pos": 5651183, "end_pos": 5642025, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017203", "url": "https://www.ensembl.org/id/ENSSSCG00000017203" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017203", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017203", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521514", "url": "https://www.ncbi.nlm.nih.gov/gene/100521514", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F1RVY7", "url": "https://www.ebi.ac.uk/intact/interactors/id:F1RVY7*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR000705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019741", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019741", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036554", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036554", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521514", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521514", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VMPCAIN", "url": "https://omabrowser.org/oma/group/VMPCAIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVY7", "url": "https://www.orthodb.org/?gene=F1RVY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10457", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10457", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10457:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10457:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00288", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00288", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08544", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08544", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10509", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10509", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70370", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70370", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131241", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131241", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13553", "url": "https://www.rhea-db.org/rhea/13553", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QDU1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVY7-1", "url": "https://www.uniprot.org/uniprotkb/F1RVY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASEQPRAEELLARARRAFLEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGCTVTLLEASAASLVMQHIQEQYSGAATFFLSQAADGAKVLHF", "length": 392, "header": "tr|F1RVY7-1|F1RVY7_PIG Isoform 1 of Galactokinase OS=Sus scrofa OX=9823 GN=GALK1 PE=1 SV=3 CANONICAL=F1RVY7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QDU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU1/entry", "sequence": { "sequence": "MAASEQPRAEELLARARRAFLEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALLIDCRSGALLVPSHLVIRSSWMGHVHCLARQTHTRPCHLPLLCLCPRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGCTVTLLEASAASLVMQHIQVDR", "length": 414, "header": "tr|A0A5G2QDU1-1|A0A5G2QDU1_PIG Computationally mapped isoform of Galactokinase OS=Sus scrofa OX=9823 GN=GALK1 PE=1 SV=1 CANONICAL=F1RVY7-1" }, "locus": { "chromosome": "12", "start_pos": 5650969, "end_pos": 5642097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084628.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084628.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061807.1" } ] } }, { "isoform_ac": "F1RVY7-1", "url": "https://www.uniprot.org/uniprotkb/F1RVY7/entry", "sequence": { "sequence": "MAASEQPRAEELLARARRAFLEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVLVGSPRTDGLVSLLTTSEDADEPRRLQFPLPTDKRPLEPGTPHWANYVKGVIQHYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQREELEAGRELVSGEAFRRARHVVGEIQRTAQAAAALSRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGCTVTLLEASAASLVMQHIQEQYSGAATFFLSQAADGAKVLHF", "length": 392, "header": "tr|F1RVY7-1|F1RVY7_PIG Isoform 1 of Galactokinase OS=Sus scrofa OX=9823 GN=GALK1 PE=1 SV=3 CANONICAL=F1RVY7-1" }, "locus": { "chromosome": "12", "start_pos": 5651119, "end_pos": 5642097, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018728.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018728.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018226.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018226.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521514", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521514", "resource": "KEGG Pathway" }, { "id": "R-SSC-70370", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70370", "resource": "Reactome", "description": "Galactose catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AMB6-1", "protein_name": "Galactokinase", "gene_name": "GALK1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAVADRGPCSVLAAARGAYEAAFGGAAAVAAWAPGRVNLIGEHTDYNGGFVLPMALQLGTVLVGSPTQDGTISILTTAPGADEPHRVRFPAPTQSRPLSPGRPHWANYVKGVIQHYRGGPVPGFNAVIASDVPLGSGLSSSASLEVATYTFLQQLCPDDGDLVAKALACQQAEHTFASVPCGIMDQFISVMAKENHALLIDCRSLDAVPVPLRDANLAVLITNSNVRHALTGSEYPTRRRQCQEAAAALGRTTLRDVTMAELEASRSRLGEEVYRRARHVVGEMERTARAAQALRDGDYVTFGMLMVESHNSLRDDYAVSCPELDQLVEAALEVDGVYGSRMTGGGFGGCTVTLLVAEATERAQQHIQEKYSGTATFYITKPSDGAKVLPL", "length": 392 }, "evidence": [ { "id": "F1RVY7", "url": "https://omabrowser.org/oma/group/F1RVY7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6H768-1", "protein_name": "Galactokinase", "gene_name": "GALK1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAASEQPQAGELLAKARRAFLEEFGAEPELAVSAPGRVNLIGEHTDYNRGLVLPMALELVTVLVGSPRVDGLVSLLTTSEDADEPRRLQFPLPTSQRPLEPGTPHWANYVKGVIQHYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQRGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPLRRRQCEEVARALGKESLREVQLEELEAGRDLMSTEAFRRARHVVGEIQRTAQAAAALRRGDYRAFGRLMVESHHSLRDDYEVSCPELDQLVEAALSAPGVYGSRMTGGGFGGCTVTLLEASAAPRVMQHIQEQYHGTATFYLSQAADGAKVLHF", "length": 392 }, "evidence": [ { "id": "F1RVY7", "url": "https://omabrowser.org/oma/group/F1RVY7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7EZK6-1", "protein_name": "Galactokinase", "gene_name": "Galk1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAWRPPRVEELLAEARRAFMEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVMVGSPRTDGLVSLLTTSKDADEPQRLQFPLPSAQWSLEPGIPQWANYVKGVIQYYPASPLCGFSAVVVSSVPLGGGLSSSASLEVATYAFLQQLCPDSGSIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPLSDPKLTVLITNSNVRHSLASSEYPIRRRQCEEVAQALGKESLREVRMEELEAGRELMSKEGFRRARHVVSEIRRTAQGAAALSRGDYKAFGRLMVESHYSLRDDYEVSCPELDLLVEAALSVPGVYGSRMTGGGFGGCTVTLLEASVAPLVMHHIQEQYSGTATFYLTQAADGAQVLAL", "length": 392 }, "evidence": [ { "id": "F1RVY7", "url": "https://omabrowser.org/oma/group/F1RVY7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P51570-1", "protein_name": "Galactokinase", "gene_name": "GALK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYGGTATFYLSQAADGAKVLCL", "length": 392 }, "evidence": [ { "id": "F1RVY7", "url": "https://omabrowser.org/oma/group/F1RVY7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9R0N0-1", "protein_name": "Galactokinase", "gene_name": "Galk1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAWRPPRVEELLAEARRAFMEEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELVTVMVGSPRTDGLVSLLTTSKDADEPQRLQFPLPSAQWSLEPGIPQWANYVKGVIQHYPASPLVGFSAVVVSSVPLGGGLSSSASLEVATYTFIQQLCPDSGAIAARAQVCQRAEHSFAGVPCGIMDQLIALLGQKGYALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSLGSSEYPVRRRQCEEVAQALGKESLREVRMEELEAGRELMSKEGFRRARHVVSEIRRTAQAAAAMSRGDYKAFGRLMVESHYSLRDDYEVSCPELDQLVEAALSVPGVYGSRMTGGGFGGCTVTLLEASVAPLVIDHIQEQYSGTATFYLSQAADGAQVLSL", "length": 392 }, "evidence": [ { "id": "F1RVY7", "url": "https://omabrowser.org/oma/group/F1RVY7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" }, { "name": "galactokinase activity", "id": "GO:0004335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004335", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" }, { "name": "galactose binding", "id": "GO:0005534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005534", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "galactose catabolic process via UDP-galactose, Leloir pathway", "id": "GO:0033499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033499", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" }, { "name": "galactose metabolic process", "id": "GO:0006012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006012", "evidence": [ { "database": "UniProtKB", "id": "F1RVY7", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13553", "name": "", "equation": "alpha-D-galactose + ATP = alpha-D-galactose 1-phosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13553", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13553" } ] }, { "id": "R-SSC-70355", "name": "GALK1 phosphorylates Gal to Gal1P", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-9931851" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70355", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70355" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9931851", "participant_name": "alpha-D-Gal [cytosol]", "crossref": [ { "id": "28061", "database": "ChEBI", "url": "" }, { "id": "G09546QO", "database": "GlyTouCan", "url": "" }, { "id": "C00984", "database": "COMPOUND", "url": "" }, { "id": "4646", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "ZINC000000901155", "database": "ZINC", "url": "" }, { "id": "HMDB0000143", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" }, { "id": "PF08544", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08544" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GHMP kinase C-terminal", "eco_id": "ECO_0000259", "start_pos": 292, "end_pos": 373, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" }, { "id": "PF00288", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00288" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GHMP kinase N-terminal", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 193, "start_aa": "Asn", "end_aa": "Gly", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RVY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVY7" }, { "id": "PF10509", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10509" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Galactokinase N-terminal", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 67, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVZ0-1", "uniprot_ac": "F1RVZ0", "uniprot_id": "F1RVZ0_PIG", "mass": { "chemical_mass": 70417.0, "monoisotopic_mass": 70417.0 }, "refseq": { "ac": "XP_003131238", "name": "tripartite motif-containing protein 47", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131238" }, "gene_names": [ { "name": "TRIM47", "type": "recommended", "evidence": [ { "id": "F1RVZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ] }, { "name": "TRIM47", "type": "synonym", "evidence": [ { "id": "XP_003131238", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131238" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase TRIM47", "type": "recommended", "evidence": [ { "id": "F1RVZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1RVZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0/entry#names_and_taxonomy" } ] }, { "name": "Tripartite motif-containing protein 47", "type": "synonym", "evidence": [ { "id": "F1RVZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 47", "type": "synonym", "evidence": [ { "id": "XP_003131238", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131238" } ] } ], "function": [ { "annotation": "E3 ubiquitin-protein ligase that mediates the ubiquitination and proteasomal degradation of CYLD.", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0#function" }, { "database": "UniProtKB", "id": "ARBA00056230", "url": "https://www.uniprot.org/uniprotkb/ARBA00056230#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM47", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0", "locus": { "chromosome": "12", "start_pos": 5539715, "end_pos": 5535236, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017199", "url": "https://www.ensembl.org/id/ENSSSCG00000017199" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017199", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017199", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15808", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15808", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19769", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19769", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19842", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19842", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520974", "url": "https://www.ncbi.nlm.nih.gov/gene/100520974", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042780", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042780", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520974", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520974", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GWVSMGV", "url": "https://omabrowser.org/oma/group/GWVSMGV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVZ0", "url": "https://www.orthodb.org/?gene=F1RVZ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR25465", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR25465", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR25465:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR25465:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003131238", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131238", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGGWPFSCPICLEPLREPVTLPCGHNFCLACLSALWPHRGAGGAGGPGGTARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSGPGPGPGPAPTPAAALAPEPAAPSAPPSSPPSAPEPSAPSAPEPWPEGEEPVRCDACPEGAALPAALSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEESLCPRHLRPLERYCRADRVCLCETCAAQEHRGHELVPLEQERALQEAEQPKVLSAVEDRMDELGAGIAQSRRTVALIKSAAVAERERVSRLFAEAAAVLQRFQTEVLGFIDEGEATMLGHSQGDLRRQEDQRSRLSQARHNLSQVPEADSVSFLQELLALRLALEEGCGPGPAPPRELSFTKSSQAVRKVRDVLASACTSQWEQLQGLGSDEDGLQKPGTEAETETQDPDSTNSLESEAPRDYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPESPTRFTHCEQVLGEGALDRGTYYWEVEIIEGWVSVGVMAEDFSPLEPYDRGRLGRNAHSCCLQWNGRSFSVWFHGLEAALPHPFSPTVGICLEYADRALAFYAVQDGKMSLLRRLKASRARRTGTPASPVDPFQSRLDSHFAGLFTRRLKPAFFLESVDAHLQIGPLKKSCISVLKRR", "length": 646, "header": "tr|F1RVZ0-1|F1RVZ0_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM47 OS=Sus scrofa OX=9823 GN=TRIM47 PE=1 SV=1 CANONICAL=F1RVZ0-1" }, "isoforms": [ { "isoform_ac": "F1RVZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0/entry", "sequence": { "sequence": "MDGGWPFSCPICLEPLREPVTLPCGHNFCLACLSALWPHRGAGGAGGPGGTARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSGPGPGPGPAPTPAAALAPEPAAPSAPPSSPPSAPEPSAPSAPEPWPEGEEPVRCDACPEGAALPAALSCLSCLASFCPAHLGPHERSPALRGHRLVPPLRRLEESLCPRHLRPLERYCRADRVCLCETCAAQEHRGHELVPLEQERALQEAEQPKVLSAVEDRMDELGAGIAQSRRTVALIKSAAVAERERVSRLFAEAAAVLQRFQTEVLGFIDEGEATMLGHSQGDLRRQEDQRSRLSQARHNLSQVPEADSVSFLQELLALRLALEEGCGPGPAPPRELSFTKSSQAVRKVRDVLASACTSQWEQLQGLGSDEDGLQKPGTEAETETQDPDSTNSLESEAPRDYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPESPTRFTHCEQVLGEGALDRGTYYWEVEIIEGWVSVGVMAEDFSPLEPYDRGRLGRNAHSCCLQWNGRSFSVWFHGLEAALPHPFSPTVGICLEYADRALAFYAVQDGKMSLLRRLKASRARRTGTPASPVDPFQSRLDSHFAGLFTRRLKPAFFLESVDAHLQIGPLKKSCISVLKRR", "length": 646, "header": "tr|F1RVZ0-1|F1RVZ0_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM47 OS=Sus scrofa OX=9823 GN=TRIM47 PE=1 SV=1 CANONICAL=F1RVZ0-1" }, "locus": { "chromosome": "12", "start_pos": 5539414, "end_pos": 5535337, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018724.6", "url": "https://www.ensembl.org/id/ENSSSCT00000018724.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018222.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018222.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 555, "start_aa": "Thr", "end_pos": 555, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr555", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 94, "start_aa": "Thr", "end_pos": 94, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr94", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520974", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520974", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZA22-1", "protein_name": "E3 ubiquitin-protein ligase TRIM47", "gene_name": "Trim47", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSSPGPMSAPAPGSARGATPEPSAPSAPPPAPEPSAPCAPEPWPAGEEPVRCDACPEGAALPAALSCLSCLASFCSAHLAPHERSPALRGHRLVPPLRRLEESLCPRHLRPLERYCRVERVCLCEACATQEHRGHELVPLEQERALQEVEQSKVLSAVEDRMDELGAGIAQSRRTVALIKSAAVAERERVSQMFAEATASLQSFQTEVLGFIEEGEAAMLGRSQGDLRRQEEQRSRLSRARHNLSQVPEADSVSFLQELLALRLALEEGCGPGPGPPRELSFTKSSQAVRAVRDILVSACASQWEQLRGLGSGEDELQKLGSEADVESQDPDSTNLLESEAPRDYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPESPTRFTHCEQVLGEGALDRGTYYWEVEIIEGWVSVGVMAEGFSPQEPYDRGRLGRNAHSCCLQWNGRGYSVWFCGLEAPLPHAFSPTVGVCLEYADHALAFYAVREGKLSLLRRLKASRPRRSGALASPTDPFQSRLDSHFSGLFNYRLKPAFFLESVDAHLQIGPLKKSCISVLKRR", "length": 642 }, "evidence": [ { "id": "F1RVZ0", "url": "https://omabrowser.org/oma/group/F1RVZ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8C0E3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM47", "gene_name": "Trim47", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ0", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RVZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ0" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 185, "end_pos": 225, "start_aa": "Leu", "end_aa": 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 94, 555 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 328, "end_pos": 330 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { 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"field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVZ5-1", "uniprot_ac": "F1RVZ5", "uniprot_id": "F1RVZ5_PIG", "mass": { "chemical_mass": 48340.0, "monoisotopic_mass": 48340.0 }, "refseq": {}, "gene_names": [ { "name": "DIPK1B", "type": "recommended", "evidence": [ { "id": "F1RVZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5" } ] } ], "protein_names": [ { "name": "Divergent protein kinase domain 1B", "type": "synonym", "evidence": [ { "id": "F1RVZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVZ5", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DIPK1B", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5", "locus": {} } ], "crossref": [ { "id": "F1RVZ5", "url": "https://alphafold.ebi.ac.uk/entry/F1RVZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005837", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005837", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513642", "url": "https://www.ncbi.nlm.nih.gov/gene/100513642", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513642", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513642", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WALLHIN", "url": "https://omabrowser.org/oma/group/WALLHIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RVZ5", "url": "https://www.orthodb.org/?gene=F1RVZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21093", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21093", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21093:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21093:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14875", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14875", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RVZ5", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRLRRLAHLVLFCPFSKGLQGRLPGLRVKYVFLVWLGVFAGSWMAYTHYSSYAELCRGHICQVVICDQFRKGIISGSICQDLCHLHQVEWRTCLSSVPGQQVYSGLWQGKEVTIKCGIEESLNSKAGSDGAPRRELVLFDKPSRGTSIKEFREMTLSFLKANLGDLPSLPALVGRVLLMADFNKDNRVSLAEAKSVWALLQRNEFLLLLSLQEKEHASRLLGYCGDLYVTEGVPLSSWPGATLPPLLRPLLPPALHGALQQWLGPAWPWRAKIAMGLLEFVEDLFHGAYGNFYMCETTLANVGYTAKYDFRMADLQQVAPEAAVRRFLRGRRCEHSADCTYGRDCRAPCDTLMRQCKGDLVQPNLAKVCELLRDYLLPGAPAALRPELGKQLRTCTTLSGLASQVEAHHSLVLSHLKSLLWKEISDSRYT", "length": 431, "header": "tr|F1RVZ5-1|F1RVZ5_PIG Isoform 1 of Divergent protein kinase domain 1B OS=Sus scrofa OX=9823 GN=DIPK1B PE=3 SV=4 CANONICAL=F1RVZ5-1" }, "isoforms": [ { "isoform_ac": "F1RVZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5/entry", "sequence": { "sequence": "MRRLRRLAHLVLFCPFSKGLQGRLPGLRVKYVFLVWLGVFAGSWMAYTHYSSYAELCRGHICQVVICDQFRKGIISGSICQDLCHLHQVEWRTCLSSVPGQQVYSGLWQGKEVTIKCGIEESLNSKAGSDGAPRRELVLFDKPSRGTSIKEFREMTLSFLKANLGDLPSLPALVGRVLLMADFNKDNRVSLAEAKSVWALLQRNEFLLLLSLQEKEHASRLLGYCGDLYVTEGVPLSSWPGATLPPLLRPLLPPALHGALQQWLGPAWPWRAKIAMGLLEFVEDLFHGAYGNFYMCETTLANVGYTAKYDFRMADLQQVAPEAAVRRFLRGRRCEHSADCTYGRDCRAPCDTLMRQCKGDLVQPNLAKVCELLRDYLLPGAPAALRPELGKQLRTCTTLSGLASQVEAHHSLVLSHLKSLLWKEISDSRYT", "length": 431, "header": "tr|F1RVZ5-1|F1RVZ5_PIG Isoform 1 of Divergent protein kinase domain 1B OS=Sus scrofa OX=9823 GN=DIPK1B PE=3 SV=4 CANONICAL=F1RVZ5-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1071859, "end_pos": 1064386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006416.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006416.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006247.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006247.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RVZ5", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513642", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513642", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AF70-1", "protein_name": "Divergent protein kinase domain 1B", "gene_name": "FAM69B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRRVRRLVHLVLFCPISKGLQSRLPGIKVKYLLVVWLGIFVGSWVAYMHYSSYSELCRGHVCRMIICDQYKKGIISGSTCKDLCEEHSLRFQHCLSSSPTQQVYSGLWKEKEVIIKCGIEEALKADSNPDSVPRRDVVLFDKPTRGTSMDEFKEMLLNFLKSNLGDQTSLAALVSQIITMADVNRDGKVSLAEAKSIWALLQLNEFLLMLSLHEKEHTSKLLGYCGDLYVTEKIPHNSLYGADIPAFLQSLLPAAVHQVVHQWFAPAWPWRAKITIGLLEFVEEIFHGTYGNFYICETSFRNVGYNDKYDFKMVNLRKVATEMTIRGFLKGRHCEQNVDCTYGKDCMATCDKLMKQCKSDMVQPNLAKVCGLLQDYLLYGAPPDLKEELQKQLRTCMTLSGLASQMEVHHSLVLNNLKTLLWKKISNTKYS", "length": 431 }, "evidence": [ { "id": "F1RVZ5", "url": "https://omabrowser.org/oma/group/F1RVZ5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TJW0-1", "protein_name": "Divergent protein kinase domain 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[], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RVZ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 431, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RVZ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RVZ5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RVZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ5" }, { "id": "SM01299", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01299" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM69 N-terminal", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 180, "start_aa": "Gly", "end_aa": "Met", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], 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}, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RVZ6-1", "uniprot_ac": "F1RVZ6", "uniprot_id": "F1RVZ6_PIG", "mass": { "chemical_mass": 22233.0, "monoisotopic_mass": 22233.0 }, "refseq": {}, "gene_names": [ { "name": "LCN10", "type": "recommended", "evidence": [ { "id": "F1RVZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6" } ] } ], "protein_names": [ { "name": "Lipocalin 10", "type": "synonym", "evidence": [ { "id": "F1RVZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RVZ6", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LCN10", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6", "locus": {} } ], "crossref": [ { "id": "F1RVZ6", "url": "https://alphafold.ebi.ac.uk/entry/F1RVZ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005836", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005836", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1RVZ6", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RVZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LF76", "url": "https://www.uniprot.org/uniprotkb/I3LF76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LF76-1", "url": "https://www.uniprot.org/uniprotkb/I3LF76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPGWLLPVLGLALVLAEGSQAQEQLPRASHNLNWSKFSGFWYILAVASEARGFLPGRDKRKLGASVVRVQKPGQLKVVLAFNRSGCQAHSLILRRDGKKAVFRNAPRGVEGFRVLSTDYSAGVVDLRLGRAGRATKTLLLFSRRDTSSFLSLKKFADVCRVLELSDALTILPKDGKRGPRRAGCRDSTVPGPTPIPWGAERQG", "length": 204, "header": "tr|F1RVZ6-1|F1RVZ6_PIG Isoform 1 of Lipocalin 10 OS=Sus scrofa OX=9823 GN=LCN10 PE=3 SV=3 CANONICAL=F1RVZ6-1" }, "isoforms": [ { "isoform_ac": "F1RVZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1RVZ6/entry", "sequence": { "sequence": "MGPGWLLPVLGLALVLAEGSQAQEQLPRASHNLNWSKFSGFWYILAVASEARGFLPGRDKRKLGASVVRVQKPGQLKVVLAFNRSGCQAHSLILRRDGKKAVFRNAPRGVEGFRVLSTDYSAGVVDLRLGRAGRATKTLLLFSRRDTSSFLSLKKFADVCRVLELSDALTILPKDGKRGPRRAGCRDSTVPGPTPIPWGAERQG", "length": 204, "header": "tr|F1RVZ6-1|F1RVZ6_PIG Isoform 1 of Lipocalin 10 OS=Sus scrofa OX=9823 GN=LCN10 PE=3 SV=3 CANONICAL=F1RVZ6-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1052960, "end_pos": 1050245, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006415.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006415.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006246.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006246.3" } ] } }, { "isoform_ac": "I3LF76-1", "url": "https://www.uniprot.org/uniprotkb/I3LF76/entry", "sequence": { "sequence": "MGPGWLLPVLGLALVLAEGSQAQEQLPRASHNLNWSKFSGFWYILAVASEARGFLPGRDKRKLGASVVRVQKPGQLKVVLAFNRSVDKGRAGVLAPSLGVEGFRVLSTDYSAGVVDLRLGRAGRATKTLLLFSRRDTSSFLSLKKFADVCRVLELSDALTILPKDGKRGPRRAGCRDSTVPGPTPIPWGAERQG", "length": 194, "header": "tr|I3LF76-1|F1RVZ6_PIG Computationally mapped isoform of Lipocalin 10 OS=Sus scrofa OX=9823 GN=LCN10 PE=3 SV=3 CANONICAL=F1RVZ6-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1052960, "end_pos": 1050245, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030391.3", "url": "https://www.ensembl.org/id/ENSSSCT00000030391.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022716.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022716.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 194, "start_aa": "Thr", "end_pos": 194, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr194", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFARGSRRRRSGRAPPEAEDPDRGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHAVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEVQYCTALEEEEKKELRAFSQQRKRENLGRGTVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCSTCRELLVDLIYFYHAGKVYCGRHHAERLRPRCQACDEIIFSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGSEPTAPGPGRRSWSAGTVSTPLAASTASFSAVEGASETTTKGTSTEPASAAGPEEPARFLRGAPHRHSMPELGLRSAPEPPSGPPGQPDPHPEDGAFGRQSAPRVSFRDPLVSDGGPRRTLSAPPAQRRRPRSPPPRAPTRRRHRRHHHHHHHHHHHHHHRRHSSRRRHHQCDSGSGSDSGSCSSSSTSPSSESSEDDGFFLGERIPLPPHLCRSVPARDTAAETPNSPSPQLPGTSRPGMSRQARDKNCIVA", "length": 622, "header": "tr|F1RW44-1|F1RW44_PIG Isoform 1 of Prickle planar cell polarity protein 3 OS=Sus scrofa OX=9823 GN=PRICKLE3 PE=3 SV=4 CANONICAL=F1RW44-1" }, "isoforms": [ { "isoform_ac": "F1RW44-1", "url": "https://www.uniprot.org/uniprotkb/F1RW44/entry", "sequence": { "sequence": 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"https://www.ensembl.org/id/ENSSSCT00000013442.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013082.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013082.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RW44", "url": "https://www.uniprot.org/uniprotkb/F1RW44" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512323", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512323", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "O43900-1", "protein_name": "Prickle planar cell polarity protein 3", "gene_name": "PRICKLE3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFARGSRRRRSGRAPPEAEDPDRGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVHAVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGIVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLGSEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETTTKGTSTELAPATGPEEPSRFLRGAPHRHSMPELGLRSVPEPPPESPGQPNLRPDDSAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRPRSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGSGSDSESCSSSPSSSSSESSEDDGFFLGERIPLPPHLCRPMPAQDTAMETFNSPSLSLPRDSRAGMPRQARDKNCIVA", "length": 615 }, "evidence": [ { "id": "F1RW44", "url": "https://omabrowser.org/oma/group/F1RW44/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80VL3-1", "protein_name": "Prickle planar cell polarity protein 3", "gene_name": "Prickle3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFARGSRRRRSGRAPPEAEDPARGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVRTVPVDLERIMCRLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRATVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHAGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMGHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCSRPLLGRPFLPRRGLIFCSRACSLGSETTAPGPGRRSWSAGTVTTPLTTSTASFSATEGTSETASKGTCTKAEPAAGPEEPSHFLRGAPHRHSMPELGLRSAPEPPTESPGHPAPHPDDNAFGRQSTPRVSFRDPLVSEGGPRRTLSAPPAQRRRPRSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGHHRCDLGSGSDSGSCSSSPSSPSSESSEDDGFFLGERIPLPPHLCRPRTTQDTSTETFNSPAQPLVQESHPVMPRQTRDKNCIVA", "length": 624 }, "evidence": [ { "id": "F1RW44", "url": "https://omabrowser.org/oma/group/F1RW44/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RW44", "url": "https://www.uniprot.org/uniprotkb/F1RW44" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RW44", "url": "https://www.uniprot.org/uniprotkb/F1RW44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RW44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW44" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 184, "end_pos": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"F1RW58", "uniprot_id": "F1RW58_PIG", "mass": { "chemical_mass": 79917.0, "monoisotopic_mass": 79917.0 }, "refseq": { "ac": "XP_013846334", "name": "zinc finger protein 630 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846334" }, "gene_names": [ { "name": "ZNF630", "type": "recommended", "evidence": [ { "id": "F1RW58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW58" } ] }, { "name": "ZNF630", "type": "synonym", "evidence": [ { "id": "XP_013846334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846334" } ] } ], "protein_names": [ { "name": "Zinc finger protein 630", "type": "synonym", "evidence": [ { "id": "F1RW58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW58/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 630 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013846334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846334" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1RW58", "url": "https://www.uniprot.org/uniprotkb/F1RW58#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RW58", "url": "https://www.uniprot.org/uniprotkb/F1RW58" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF630", "url": "https://www.uniprot.org/uniprotkb/F1RW58", "locus": { "chromosome": "X", "start_pos": 42518211, "end_pos": 42540232, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012286", "url": "https://www.ensembl.org/id/ENSSSCG00000012286" } ] } } ], "crossref": [ { "id": "F1RW58", "url": "https://alphafold.ebi.ac.uk/entry/F1RW58", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525971", "url": "https://www.ncbi.nlm.nih.gov/gene/100525971", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525971", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525971", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YTGMKPC", "url": "https://omabrowser.org/oma/group/YTGMKPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RW58", "url": "https://www.orthodb.org/?gene=F1RW58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013846334", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846334", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RW58", "url": "https://www.uniprot.org/uniprotkb/F1RW58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RW58-1", "url": "https://www.uniprot.org/uniprotkb/F1RW58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRHPDPPKRAGRGRDFRGMLSPFVQAGSPAWLEKELLGPESRVREPLTFEDVAVNFTQEEWQQLDPAQKTLHRDVMLEIYSHLVSVGCSGIKPDIISKLEHGEDPWIRESELPRWTYSDREKSPDSFQQIISGEFSFQREILERTPRDNSLYSIFKVWHIDGQIYRYQGNQGRALRQITIFSHETMTKNRGPKFNTFGKIFSGCIDLDPSSKTLHHFDSCEKSLKSNLDSLTCNRSCIRKNPIERFGCGRLPSYSSSCYMPEKIHIRMKSHGPSQCENVLSQKQAHIQYKKVQAVEKPNVCSVCEKGFIKKSQLIIHQRIHTGEKPYICGDCGKAFSEKSHLVVHQRIHTGEKPYECTECGRAFSQKSPFIVHQRVHTGEKPYECFECQKAFSQKSHLIIHQRVHTREKHFKCHECGKAFCEKSHLIHQITHTGEKPFECTECGKTFPRKTQLVIHQRTHTGEKPYKCSECGKTFCQQSHLIGHQRIHTGEKPYICTDCGKAFSQKSHLTGHHRLHTGEKPYICTQCGRAFSQKSPLIIHQRIHTGEKPYECSECGKTFSQKSPLIIHQRIHTGEKPYECTECGSAFSLKSHLIIHQRAHTGEKPYECSECGKTFCEKSLLVVHQRIHTREKASESTDYGITFSWKSQMITYQRVPMREKPSKCSDCGKVFCHQRHCTGHQNPRKRETLYTY", "length": 692, "header": "tr|F1RW58-1|F1RW58_PIG Isoform 1 of Zinc finger protein 630 OS=Sus scrofa OX=9823 GN=ZNF630 PE=3 SV=3 CANONICAL=F1RW58-1" }, "isoforms": [ { "isoform_ac": "F1RW58-1", "url": "https://www.uniprot.org/uniprotkb/F1RW58/entry", "sequence": { "sequence": "MRHPDPPKRAGRGRDFRGMLSPFVQAGSPAWLEKELLGPESRVREPLTFEDVAVNFTQEEWQQLDPAQKTLHRDVMLEIYSHLVSVGCSGIKPDIISKLEHGEDPWIRESELPRWTYSDREKSPDSFQQIISGEFSFQREILERTPRDNSLYSIFKVWHIDGQIYRYQGNQGRALRQITIFSHETMTKNRGPKFNTFGKIFSGCIDLDPSSKTLHHFDSCEKSLKSNLDSLTCNRSCIRKNPIERFGCGRLPSYSSSCYMPEKIHIRMKSHGPSQCENVLSQKQAHIQYKKVQAVEKPNVCSVCEKGFIKKSQLIIHQRIHTGEKPYICGDCGKAFSEKSHLVVHQRIHTGEKPYECTECGRAFSQKSPFIVHQRVHTGEKPYECFECQKAFSQKSHLIIHQRVHTREKHFKCHECGKAFCEKSHLIHQITHTGEKPFECTECGKTFPRKTQLVIHQRTHTGEKPYKCSECGKTFCQQSHLIGHQRIHTGEKPYICTDCGKAFSQKSHLTGHHRLHTGEKPYICTQCGRAFSQKSPLIIHQRIHTGEKPYECSECGKTFSQKSPLIIHQRIHTGEKPYECTECGSAFSLKSHLIIHQRAHTGEKPYECSECGKTFCEKSLLVVHQRIHTREKASESTDYGITFSWKSQMITYQRVPMREKPSKCSDCGKVFCHQRHCTGHQNPRKRETLYTY", "length": 692, "header": "tr|F1RW58-1|F1RW58_PIG Isoform 1 of Zinc finger protein 630 OS=Sus scrofa OX=9823 GN=ZNF630 PE=3 SV=3 CANONICAL=F1RW58-1" }, "locus": { "chromosome": "X", "start_pos": 42540178, "end_pos": 42518608, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013435.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013435.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013075.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013075.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RW58", "url": "https://www.uniprot.org/uniprotkb/F1RW58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525971", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525971", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2M218-1", "protein_name": "Zinc finger protein 630", "gene_name": "ZNF630", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"MAEPQGLMTFEDVAVDFTQEEWQYLNPLQRTLYRDVMLETYSNLVSVAGQHVTKPTLILKLEVEEPCLAEGKIPVWNFPEEACQVDEQIERQHEDDQDKYLLQIGLPDKKTVITKSGHDYNEFGSILHLSTNFVASIQIPYKHESFGHNMVDNLDLFNRSSVGKKHDNGCAKLFFHTEYEKTTPGVKAYGYKDYGKTLRQKKGLSLHQRIKNGEKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIHQRTHTGEKPYACTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHTGKKAHGKGHTRKSKLIAH", "length": 622, "header": "tr|F1RW59-1|F1RW59_PIG Isoform 1 of Zinc finger protein 182 OS=Sus scrofa OX=9823 GN=ZNF182 PE=3 SV=3 CANONICAL=F1RW59-1" }, "isoforms": [ { "isoform_ac": "A0A287B3E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3E6/entry", "sequence": { "sequence": "MAEPQGLMTFEDVAVDFTQEEWQYLNPLQRTLYRDVMLETYSNLVSVEEACQVDEQIERQHEDDQDKYLLQIGLPDKKTVITKSGHDYNEFGSILHLSTNFVASIQIPYKHESFGHNMVDNLDLFNRSSVGKKHDNGCAKLFFHTEYEKTTPGVKAYGYKDYGKTLRQKKGLSLHQRIKNGEKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIHQRTHTGEKPYACTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHTGKKAHGKGHTRKSKLIAH", "length": 590, "header": "tr|A0A287B3E6-1|A0A287B3E6_PIG Computationally mapped isoform of Zinc finger protein 182 OS=Sus scrofa OX=9823 GN=ZNF182 PE=3 SV=2 CANONICAL=F1RW59-1" }, "locus": { "chromosome": "X", "start_pos": 42471820, "end_pos": 42445495, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061397.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061397.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050993.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050993.2" } ] } }, { "isoform_ac": "F1RW59-1", "url": "https://www.uniprot.org/uniprotkb/F1RW59/entry", "sequence": { "sequence": "MAEPQGLMTFEDVAVDFTQEEWQYLNPLQRTLYRDVMLETYSNLVSVAGQHVTKPTLILKLEVEEPCLAEGKIPVWNFPEEACQVDEQIERQHEDDQDKYLLQIGLPDKKTVITKSGHDYNEFGSILHLSTNFVASIQIPYKHESFGHNMVDNLDLFNRSSVGKKHDNGCAKLFFHTEYEKTTPGVKAYGYKDYGKTLRQKKGLSLHQRIKNGEKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIHLRTHTGERPFECPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTKCGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVHQRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNECEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIHQRTHTGEKPYACTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHTGKKAHGKGHTRKSKLIAH", "length": 622, "header": "tr|F1RW59-1|F1RW59_PIG Isoform 1 of Zinc finger protein 182 OS=Sus scrofa OX=9823 GN=ZNF182 PE=3 SV=3 CANONICAL=F1RW59-1" }, "locus": { "chromosome": "X", "start_pos": 42471820, "end_pos": 42445495, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013433.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013433.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013073.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013073.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., 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"MLCWGYWSLGQPGISTNLQGIVAEPQVCGFISDRSVKEVACGGDHSVFLLEDGEVYTCGLNTKGQLGHEREGNKPEQIGALADEHIVHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEESVAVPRLIQKLNQQTILQVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEEDRESPCHVKLLRAQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSMNDEVNPRRVLELMGSEVTQIACGRQHTLAFVPSSGLIYAFGCGARGQLGTGHTCNVKCPSPVKGYWAAHSGQLSARADRFKYHIVKQIFSGGDQTFVLCSKYENSSPAVDFRTMNQAHYTSLINDETIAVWRQKLAEHNNANTINGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRVLFEKLMNSQHSVILEQILNSFESCLIPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLDTNPSKVLDNWWSQVCPKYFTKLVNLYKGAVVYLLRGRKTFLIPVLFNNYITAALRLLEKLYKVNLKVKHVEYDTFYIPEISSLVDIQEDYLMWFLHQAGMKARPSIIQDTVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSPFLVLHVRRNNLVGDALRELSIHSDIDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELLNPIYGMFTYYQDSNLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVQPGLEDLKELSPAEGRSLQELLDYPGEDIEETFCLNFTICRESYGVVEQKKLIPGGDRVTVCKENRQEFVDAYVNYVFQISVGEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWEELEETAVYKGDYSAAHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQIVIQSTASGEDYLPVAHTCYNLLDLPKYSSKEVLRARLTQALDNYEGFSLA", "length": 1050, "header": "tr|F1RW66-1|F1RW66_PIG Isoform 1 of HECT-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=HERC3 PE=4 SV=3 CANONICAL=F1RW66-1" }, "locus": { "chromosome": "8", "start_pos": 130454866, "end_pos": 130347751, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010082.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010082.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009816.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009816.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RW66", "url": "https://www.uniprot.org/uniprotkb/F1RW66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517903", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517903", "resource": "KEGG Pathway" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RW66", "url": "https://www.uniprot.org/uniprotkb/F1RW66" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RW66", "url": "https://www.uniprot.org/uniprotkb/F1RW66" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1RW66", "url": "https://www.uniprot.org/uniprotkb/F1RW66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1RW66", "url": "https://www.uniprot.org/uniprotkb/F1RW66" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1RW66", "url": "https://www.uniprot.org/uniprotkb/F1RW66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" }, { "start_pos": 856, "end_pos": 858, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RW66-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1050, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RW66-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RW66" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RW66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW66" }, { "id": "PS50237", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50237" } ], "ann_type": "Domain_Extent_Annotation", 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"https://data.glygen.org/ln2downloads/pdb/current/AF-F1RW79-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RW79" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RW79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RW79" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 302, "end_pos": 329, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 165, 490, 662 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 410, "end_pos": 412 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", 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"https://www.ncbi.nlm.nih.gov/gene/100511391", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511391", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511391", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RPPACTK", "url": "https://omabrowser.org/oma/group/RPPACTK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RWC7", "url": "https://www.orthodb.org/?gene=F1RWC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005666707", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666707", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RWC7", "url": "https://www.uniprot.org/uniprotkb/F1RWC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWC7-1", "url": "https://www.uniprot.org/uniprotkb/F1RWC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METPPRPPACTKQGHQKPLDSKDDNTEKHCPVTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDMEISAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQDVKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMKYHLLPTEQRILMKSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATANEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPASNTWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL", "length": 593, "header": "tr|F1RWC7-1|F1RWC7_PIG Isoform 1 of Kelch like family member 2 OS=Sus scrofa OX=9823 GN=KLHL2 PE=4 SV=4 CANONICAL=F1RWC7-1" }, "isoforms": [ { "isoform_ac": "F1RWC7-1", "url": "https://www.uniprot.org/uniprotkb/F1RWC7/entry", "sequence": { "sequence": "METPPRPPACTKQGHQKPLDSKDDNTEKHCPVTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDMEISAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQDVKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMKYHLLPTEQRILMKSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATANEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPASNTWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL", "length": 593, "header": "tr|F1RWC7-1|F1RWC7_PIG Isoform 1 of Kelch like family member 2 OS=Sus scrofa OX=9823 GN=KLHL2 PE=4 SV=4 CANONICAL=F1RWC7-1" }, "locus": { "chromosome": "8", "start_pos": 43870784, "end_pos": 43750520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009698.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009698.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009449.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009449.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RWC7", "url": "https://www.uniprot.org/uniprotkb/F1RWC7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511391", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511391", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LWA6-1", "protein_name": "Kelch like family member 2", "gene_name": "KLHL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METPPRPPACTNQGHQKSLDSKDDNTEKHCPVTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDMEISAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQDVKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMKYHLLPTEQRILMKSIRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYSATANEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPATNTWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL", "length": 593 }, "evidence": [ { "id": "F1RWC7", "url": "https://omabrowser.org/oma/group/F1RWC7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8M9PKI1-1", "protein_name": "Kelch-like protein 2 isoform X1", "gene_name": "klhl2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEIHPLCTKLCHHKAVELKDDVYEKQSAVTINPRHMKKAFRIMNELRSQSVLCDVTIIAEDVEIAAHRVVLAAGSPYFHAMFTGEMTESRQKKVRIKEIDGWTLGMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQEVKKACCEFLITQLHPTNCLGIRAFADLHACTELLNLANTYAEQHFSEVVQSEEFLNLGMDQVCSLIASDKLTIPSEEKVFEAVIAWVMHDKDVRQEHLAHLMEHVRLPLLSREYLVQRVEEETLVKNSSACKDYLIEAMKYHLLPADQRSMMKTIRTRVRTPISYPKVMMVVGGQAPKAIRSVECYDFEEERWFQVAELPSRRCRAGVVFMGGVVYAVGGFNGSLRVRTVDAYDPVKDEWCCVSSMQDRRSTLGCAFLSGLLYAVGGFDGSTGLATVEAYNAKANEWFHVNPMNTRRSSVGVGVVGGLLYAVGGYDGATRQCLSTVEAYNPNTNEWSYTAEMGTRRSGAGVGVLKGLLYAVGGHDGPLVRKSCEVFDPATNTWKQVADMNMCRRNAGVCALSNLLYVIGGDDGSCNLASVEFYNPNTDKWTLLPTCMSTGRSYAGVTVIDKPL", "length": 590 }, "evidence": [ { "id": "F1RWC7", "url": "https://omabrowser.org/oma/group/F1RWC7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1LZF0-1", "protein_name": "Kelch-like protein 2", "gene_name": "Klhl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESPPLPPACTKQGHQKPLDSKDENPEKHCPLTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDMEIPAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQDVKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMKYHLLPTEQRMLMKSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATANEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL", "length": 593 }, "evidence": [ { "id": "F1RWC7", "url": "https://omabrowser.org/oma/group/F1RWC7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O95198-1", "protein_name": "Kelch-like protein 2", "gene_name": "KLHL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METPPLPPACTKQGHQKPLDSKDDNTEKHCPVTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDMEISAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLIDYVYTAEIQVTEENVQVLLPAAGLLQLQDVKKTCCEFLESQLHPVNCLGIRAFADMHACTDLLNKANTYAEQHFADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHVRLPLLPREYLVQRVEEEALVKNSSACKDYLIEAMKYHLLPTEQRILMKSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDGASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKPL", "length": 593 }, "evidence": [ { "id": "F1RWC7", "url": "https://omabrowser.org/oma/group/F1RWC7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8JZP3-1", "protein_name": "Kelch-like protein 2", "gene_name": "Klhl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RWE6-1", "uniprot_ac": "F1RWE6", "uniprot_id": "F1RWE6_PIG", "mass": { "chemical_mass": 8406.0, "monoisotopic_mass": 8406.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "KRAB domain-containing protein", 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"database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RWE6", "url": "https://www.uniprot.org/uniprotkb/F1RWE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWE6-1", "url": "https://www.uniprot.org/uniprotkb/F1RWE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QPYSGDGPALGKNFFSFQAPLTFKDVAIEFSQEEWDCLDPDQRALFWDVMLETYGNLLSVGEGNFPLKLGSALGCL", "length": 76, "header": "tr|F1RWE6-1|F1RWE6_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1RWE6-1" }, "isoforms": [ { "isoform_ac": "F1RWE6-1", "url": "https://www.uniprot.org/uniprotkb/F1RWE6/entry", "sequence": { "sequence": "QPYSGDGPALGKNFFSFQAPLTFKDVAIEFSQEEWDCLDPDQRALFWDVMLETYGNLLSVGEGNFPLKLGSALGCL", "length": 76, "header": "tr|F1RWE6-1|F1RWE6_PIG Isoform 1 of KRAB domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1RWE6-1" }, "locus": { "chromosome": "6", "start_pos": 56869357, "end_pos": 56868583, "strand": "+", "evidence": [ { "database": 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"chemical_mass": 67228.0, "monoisotopic_mass": 67228.0 }, "refseq": { "ac": "XP_013836450", "name": "zinc finger protein 652", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836450" }, "gene_names": [ { "name": "ZNF652", "type": "recommended", "evidence": [ { "id": "F1RWF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ] }, { "name": "ZNF652", "type": "synonym", "evidence": [ { "id": "XP_013836450", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836450" } ] } ], "protein_names": [ { "name": "Zinc finger protein 652", "type": "recommended", "evidence": [ { "id": "F1RWF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWF4/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 652", "type": "synonym", "evidence": [ { "id": "XP_013836450", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836450" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF652", "url": "https://www.uniprot.org/uniprotkb/F1RWF4", "locus": { "chromosome": "12", "start_pos": 25492537, "end_pos": 25553715, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017546", "url": "https://www.ensembl.org/id/ENSSSCG00000017546" } ] } } ], "crossref": [ { "id": "F1RWF4", "url": "https://alphafold.ebi.ac.uk/entry/F1RWF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017546", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017546", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524338", "url": "https://www.ncbi.nlm.nih.gov/gene/100524338", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524338", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524338", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VESCAVH", "url": "https://omabrowser.org/oma/group/VESCAVH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RWF4", "url": "https://www.orthodb.org/?gene=F1RWF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF106", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF106", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013836450", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013836450", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWF4-1", "url": "https://www.uniprot.org/uniprotkb/F1RWF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHTTSSCQELVENCAVHVAGMAQEESRRGQVPSTFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPFFRETRAVSDVHAVKEDRENSDDTEEEEEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEESEEEATDDSNDYGENERQKKKEKIVEKVSVTQRRTRRAASVAAAATSPTPRATRGRRKSVEPPKRKKRAAKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLTSAPATPVPSVVNTPATPAPPITMNPVSTLPPRPIPHPFSHLHIHAHPHHPHHLPIPPVPHLPPLQLSLRASP", "length": 585, "header": "tr|F1RWF4-1|F1RWF4_PIG Isoform 1 of Zinc finger protein 652 OS=Sus scrofa OX=9823 GN=ZNF652 PE=3 SV=2 CANONICAL=F1RWF4-1" }, "isoforms": [ { "isoform_ac": "F1RWF4-1", "url": "https://www.uniprot.org/uniprotkb/F1RWF4/entry", "sequence": { "sequence": "MSHTTSSCQELVENCAVHVAGMAQEESRRGQVPSTFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPFFRETRAVSDVHAVKEDRENSDDTEEEEEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEESEEEATDDSNDYGENERQKKKEKIVEKVSVTQRRTRRAASVAAAATSPTPRATRGRRKSVEPPKRKKRAAKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLTSAPATPVPSVVNTPATPAPPITMNPVSTLPPRPIPHPFSHLHIHAHPHHPHHLPIPPVPHLPPLQLSLRASP", "length": 585, "header": "tr|F1RWF4-1|F1RWF4_PIG Isoform 1 of Zinc finger protein 652 OS=Sus scrofa OX=9823 GN=ZNF652 PE=3 SV=2 CANONICAL=F1RWF4-1" }, "locus": { "chromosome": "12", "start_pos": 25508720, "end_pos": 25493310, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019100.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019100.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018594.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018594.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 529, "start_aa": "Thr", "end_pos": 529, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr529", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524338", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524338", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A1L1J6-1", "protein_name": "Zinc finger protein 652", "gene_name": "Znf652", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSYTASPCQELVEPCAVHAEGMAQEESHRSQAPPTFYHGASQELDLSTKVYKRESGSPYSVLADSKMSKPHLHETEEQPYFREPRAVSDVHTVKEDRENSDDTEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEETEEDATDNSSDYGENGRQKKKEKQVEKVRVTQRRTRRAASVAAATTSPTPRTTRGRRKSAELPKRKKRAAKEPKAPVQKAKCDEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFACEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLASAPAAPAPAVANTPTSPAPAVSMNPVGSALPSRPVPHPFSHLHIHTHPHHSHHLPIPPVPHLPPPPALFKSEPLNHRSQSEDTFLRHLAEKNSPAQAQHH", "length": 608 }, "evidence": [ { "id": "F1RWF4", "url": "https://omabrowser.org/oma/group/F1RWF4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BQL6-1", "protein_name": "Zinc finger protein 652", "gene_name": "ZNF652", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSQTANSCQQLVENCAVHVAGMAQEDSRRGQVPPTFYHGASQELDLSTKVYKRESGSPYPVLVDSKMSKPHLHEREEQPYFRENRSVGEVRAVKEDRENSDDSEEEEEEEDEVTYKREQIIVEVNLNNQTLNVSKGEKGVPSQSKETAVLKTSSEEEEGDSGEEATEDSNDYEENERQKKKEKRVEKVSVAQRRTRRAASAAAATTSPSPRTTRGRRKSVEPPKRKKKAAKEPKAPVQKSKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVSSAVQIPLSTTSATTVPAVVNTPTAPTPPINLNPVSTLPPRPIPHPYSHLHLHPHPHHPHHLPVPPVPHLPPPPALFKSEPLNHRGQSEDSFLRHLAEKNSSAQHH", "length": 609 }, "evidence": [ { "id": "F1RWF4", "url": "https://omabrowser.org/oma/group/F1RWF4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N440-1", "protein_name": "Zinc finger protein 652", "gene_name": "ZNF652", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSHTASSCQELAENRAVHGAGMAQEDSRRGQVPSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPYFRETRAVSDVHGVKEDRENSDDTEEEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEESEEEATDDSNDYGENERQKKKEKTVEKVSVTQRRTRRAASVAAAATSPTPRATRGRRKSVEPPKRKKRATKEPKAAVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLTTSPATPVPSAVNTPTTPAPPVSMNPVGTLPPRPIPHPFSHLHIHAHPHHPHHLPIPPVPHLPPPPALFKSEPLNNRGQGEDTFLRHLAEKNSAAQHH", "length": 608 }, "evidence": [ { "id": "F1RWF4", "url": "https://omabrowser.org/oma/group/F1RWF4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HJP5-1", "protein_name": "Zinc finger protein 652", "gene_name": "Znf652", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSYPASPCQELAENCAVHATGMAQEESRRSQAPPAFYRGASQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPYFRETRAVSDVHTVKEDRENSDDTEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEGEEESEEATDDSNDYGENERQKKKEKRAEKVRVTQRRTRRTASVAAAATSPTPRTTRGRRKSAELPKRKKRATKEPKAAVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFACEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLASAPAAPAPAVASTPTSPAPAVSMNPVGGALPSRPVPHPFSHLHIPTHPHHAHHLPIPPVPHLPPPPALFKSEPLNHRGQSEDTFLRHLAEKNNTAQAQHH", "length": 607 }, "evidence": [ { "id": "F1RWF4", "url": "https://omabrowser.org/oma/group/F1RWF4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5DU09-1", "protein_name": "Zinc finger protein 652", "gene_name": "Znf652", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYTASPCPELVEPCAVHAEGMAQEESHRSQAPPTFYHGASQELDLSTKVYKRESGSPYSVLADTKMSKPHLHETEEQPYFREPRAVSDVHTVKEDRENSDDTEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEDEEETEEEATDNSSDYGENGRQKKKEKQVERVRVTQRRTRRAASAAAATTSPAPRTTRGRRKSAELPKRKKRATKEAKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFACEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLASAPAAPAPAVANTPTSPAPAVSMSPVGAVLPSRPVPHPFSHLHIHTHPHHAHHLPIPPVPHLPPPPALFKSEPLNHRSQSEDTFLRHLAEKNSAAPAQHH", "length": 608 }, "evidence": [ { "id": "F1RWF4", "url": "https://omabrowser.org/oma/group/F1RWF4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y2D9-1", "protein_name": "Zinc finger protein 652", "gene_name": "ZNF652", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSHTASSCQELVENCAVHVAGMAQEDSRRGQVPSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLHETEEQPYFRETRAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLNNQTLNVSKGEKGVSSQSKETPVLKTSSEEEEEESEEEATDDSNDYGENEKQKKKEKIVEKVSVTQRRTRRAASVAAATTSPTPRTTRGRRKSVEPPKRKKRATKEPKAPVQKAKCEEKETLTCEKCPRVFNTRWYLEKHMNVTHRRMQICDKCGKKFVLESELSLHQQTDCEKNIQCVSCNKSFKKLWSLHEHIKIVHGYAEKKFSCEICEKKFYTMAHVRKHMVAHTKDMPFTCETCGKSFKRSMSLKVHSLQHSGEKPFRCENCDERFQYKYQLRSHMSIHIGHKQFMCQWCGKDFNMKQYFDEHMKTHTGEKPFICEICGKSFTSRPNMKRHRRTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVTSPVNVPPAVQIPLTTSPATPVPSVVNTATTPTPPINMNPVSTLPPRPIPHPFSHLHIHPHPHHPHHLPIPPVPHLPPPPALFKSEPLNHRGQSEDNFLRHLAEKNSSAQHH", "length": 606 }, "evidence": [ { "id": "F1RWF4", "url": "https://omabrowser.org/oma/group/F1RWF4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1RWF4", "url": "https://www.uniprot.org/uniprotkb/F1RWF4" } ], "pmid": "" } ] }, { "name": 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"MRSSLTMVGTLWAFLSLVTAVTSSTSYFLPYWLFGSQMGKPVSFSTFRRCNYPVRGEGHSLIMVEECGRYASFNAIPSLAWQMCTVVTGAGCALLLLVALAAVLGCCMEELISRMMGRCMGAAQFVGGLLISSGCALYPLGWNSPEIMQTCGNVSNQFQLGTCRLGWAYYCAGGGAAAAMLICTWLSCFAGRNPKPVILVESIMRNTNSYAMELDHCLKP", "length": 220 }, "evidence": [ { "id": "F1RWT8", "url": "https://omabrowser.org/oma/group/F1RWT8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RWT8", "url": "https://www.uniprot.org/uniprotkb/F1RWT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RWY9-1", "uniprot_ac": "F1RWY9", "uniprot_id": "F1RWY9_PIG", "mass": { "chemical_mass": 10675.0, "monoisotopic_mass": 10675.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1RWY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWY9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RWY9", "url": "https://www.uniprot.org/uniprotkb/F1RWY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RWY9", "locus": {} } ], "crossref": [ { "id": "F1RWY9", "url": "https://alphafold.ebi.ac.uk/entry/F1RWY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001005", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001005", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR032157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR33559", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33559", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33559:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33559:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1RWY9", "url": "https://www.uniprot.org/uniprotkb/F1RWY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RWY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEPRVGAVSQNNFRTSLWEQIVHFHVTRLMDSLFLWVKATRKLSNLAVAMCCRCGSDPRLLWLCRRPAAAVTTGPLAWEPSYAKDVALKSQNE", "length": 94, "header": "tr|F1RWY9-1|F1RWY9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1RWY9-1" }, "isoforms": [ { "isoform_ac": "F1RWY9-1", "url": "https://www.uniprot.org/uniprotkb/F1RWY9/entry", "sequence": { "sequence": "MEEPRVGAVSQNNFRTSLWEQIVHFHVTRLMDSLFLWVKATRKLSNLAVAMCCRCGSDPRLLWLCRRPAAAVTTGPLAWEPSYAKDVALKSQNE", "length": 94, "header": "tr|F1RWY9-1|F1RWY9_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1RWY9-1" }, "locus": { "chromosome": "2", "start_pos": 10488503, "end_pos": 10487594, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001097.4", "url": "https://www.ensembl.org/id/ENSSSCT00000001097.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001075.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001075.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 73, "start_aa": "Thr", "end_pos": 73, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr73", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RWY9", "url": "https://www.uniprot.org/uniprotkb/F1RWY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteasome assembly", "id": "GO:0043248", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043248", "evidence": [ { "database": "UniProtKB", "id": "F1RWY9", "url": "https://www.uniprot.org/uniprotkb/F1RWY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RWY9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 94, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RWY9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RWY9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 73 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { 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"https://www.uniprot.org/uniprotkb/F1RWZ4/entry#names_and_taxonomy" } ] }, { "name": "Peroxisomal 3,2-trans-enoyl-CoA isomerase", "type": "synonym", "evidence": [ { "id": "F1RWZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Able to isomerize both 3-cis and 3-trans double bonds into the 2-trans form in a range of enoyl-CoA species. 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43684:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43684:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00378", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00378", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00887", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00887", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-390247", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390247", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9033241", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "29847", "url": "https://www.rhea-db.org/rhea/29847", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45228", "url": "https://www.rhea-db.org/rhea/45228", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "45900", "url": "https://www.rhea-db.org/rhea/45900", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46044", "url": "https://www.rhea-db.org/rhea/46044", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46068", "url": "https://www.rhea-db.org/rhea/46068", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47476", "url": "https://www.rhea-db.org/rhea/47476", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "49852", "url": "https://www.rhea-db.org/rhea/49852", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RWZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMSRLLPAVSGRVPGVPPTPAMARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVSSLSASSCSQVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGNDLSNFKDIPPDKVEERAQSSAVLLRDFVDCFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL", "length": 415, "header": "tr|F1RWZ4-1|F1RWZ4_PIG Isoform 1 of Enoyl-CoA delta isomerase 2 OS=Sus scrofa OX=9823 GN=ECI2 PE=1 SV=3 CANONICAL=F1RWZ4-1" }, "isoforms": [ { "isoform_ac": "F1RWZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4/entry", "sequence": { "sequence": "MMSRLLPAVSGRVPGVPPTPAMARVVGLLAHRWFSGAFRGPLQVIRCPAPQLHVSGPAMAASQEDFAKAMNQVKLLKEDPGNEVKLKLYALYKQATEGPCNAPKPGMLDFILKAKWDAWNALGNLPKETARQNYVDLVSSLSASSCSQVTPAADKKQAESDSLVVTSEDGITTIRLNRPAKKNALTTQMYRDIMRALEAASEDSSRITVLTGSGDYYCSGNDLSNFKDIPPDKVEERAQSSAVLLRDFVDCFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVWARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKKAKL", "length": 415, "header": "tr|F1RWZ4-1|F1RWZ4_PIG Isoform 1 of Enoyl-CoA delta isomerase 2 OS=Sus scrofa OX=9823 GN=ECI2 PE=1 SV=3 CANONICAL=F1RWZ4-1" }, "locus": { "chromosome": "7", "start_pos": 2446231, "end_pos": 2426706, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001092.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001092.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001070.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001070.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 19, "start_aa": "Thr", "end_pos": 19, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr19", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-390247", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390247", "resource": "Reactome", "description": "Beta-oxidation of very long chain fatty acids" }, { "id": "R-SSC-9033241", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "resource": "Reactome", "description": "Peroxisomal protein import" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TZC7-1", "protein_name": "Enoyl-CoA delta isomerase 2", "gene_name": "ECI2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGLAGRFARRWFSGLLGSPLQVPALGLHVRGPAMLASQKDFNNAVSQVKLLKEDPGNEVKLKLYALYKQATEGPCNVPKPGMLDFINKTKWDAWNALGSLSKEAARQNYVDLVSRLSASSESPSPEAPAADRKQPESDSLVVTSEDGITTIRLNRPAKKNALTTQMYHDIIAALQAASKDESAITVLTGSGDYYCSGNDLTNFTHLPAGGLEEMARSAAALLRDFVNCFIDFPKPLVAVVNGPAVGISVTILGLFDVVYATDRASFHTPFSHLGQSPEGCSSYTFPKIMGSSKAAEMLLFGKKLTAQEACAQGLVTEVFPDGTFQKEVWARLKAYSKLPPNNAVLEPEVCGHRARPTPAKVTCAHSNIQEALSSLQGHENFQADHQKQGERKVARGQRGRKQCPKGEVAVRRMHECHRKLPVQKGEALMACAAARRLQGSAVPLLPCVSPRAE", "length": 454 }, "evidence": [ { "id": "F1RWZ4", "url": "https://omabrowser.org/oma/group/F1RWZ4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O75521-1", "protein_name": "Enoyl-CoA delta isomerase 2", "gene_name": "ECI2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAMAYLAWRLARRSCPSSLQVTSFPVVQLHMNRTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDRKSTGFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSKL", "length": 394 }, "evidence": [ { "id": "F1RWZ4", "url": "https://omabrowser.org/oma/group/F1RWZ4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5XIC0-1", "protein_name": "Enoyl-CoA delta isomerase 2", "gene_name": "Eci2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVTWSRARCWCPSLLQVLRLPVTKLHLGRPAMRATQQDFENAMNQVKLLKKDPGNEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEASSQGKGGADGKAQESKGILVTSEGGITKITFNRPSKKNAITFQMYQDIILALKNASTDDTVITVFTGAGDYYSSGNDLTNFTSASGGMEEAANKGAIVLREFVNTFIDFPKPLVAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRLKTYAKLPPNSMRISKELIRKNEKEKLHAVNEEECTTLRARWLSEECINAIMSFVTRKPKL", "length": 391 }, "evidence": [ { "id": "F1RWZ4", "url": "https://omabrowser.org/oma/group/F1RWZ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9WUR2-1", "protein_name": "Enoyl-CoA delta isomerase 2", "gene_name": "Eci2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVTWSRARCWCPSVLQVFRLQVAKLHLGRPTMRASQQDFENALNQVKLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPSQGKRGADEKARESKDILVTSEDGITKITFNRPTKKNAISFQMYRDIILALKNASTDNTVMAVFTGTGDYYCSGNDLTNFTSATGGIEEAASNGAVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFDAVFASDRATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRLKTYAKLPPNAMRISKELIRKNEKEKLYAVNAEECTTLQARWLSEECMNAIMSFVSRKPKL", "length": 391 }, "evidence": [ { "id": "F1RWZ4", "url": "https://omabrowser.org/oma/group/F1RWZ4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4" } ], "pmid": "" }, { "name": "peroxisomal matrix", "id": "GO:0005782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005782", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fatty acid beta-oxidation", "id": "GO:0006635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006635", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "fatty-acyl-CoA binding", "id": "GO:0000062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000062", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4" } ], "pmid": "" }, { "name": "delta(3)-delta(2)-enoyl-CoA isomerase activity", "id": "GO:0004165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004165", "evidence": [ { "database": "UniProtKB", "id": "F1RWZ4", "url": "https://www.uniprot.org/uniprotkb/F1RWZ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29847", "name": "", "equation": "(2E)-tetradecenoyl-CoA = (3Z)-tetradecenoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29847", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29847" } ] }, { "id": "45228", "name": "", "equation": "a (3E)-enoyl-CoA = a 4-saturated (2E)-enoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45228", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45228" } ] }, { "id": "45900", "name": "", "equation": "a (3Z)-enoyl-CoA = a 4-saturated (2E)-enoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "45900", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/45900" } ] }, { "id": "46044", "name": "", "equation": "(3Z)-octenoyl-CoA = (2E)-octenoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46044", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46044" } ] }, { "id": "46068", "name": "", "equation": "(3E)-nonenoyl-CoA = (2E)-nonenoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46068", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46068" } ] }, { "id": "47476", "name": "", "equation": "(3E)-tetradecenoyl-CoA = (2E)-tetradecenoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47476", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47476" } ] }, { "id": "49852", "name": "", "equation": "(3E)-octenoyl-CoA = (2E)-octenoyl-CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "49852", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/49852" } ] }, { "id": "R-SSC-6809808", "name": "ECI2 isomerizes 3Z-enoyl-CoA to 2E-enoyl-CoA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal matrix", "input_participant_list": [ "R-ALL-6809801" ], "output_participant_list": [ "R-ALL-6809800" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6809808", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809808" } ] }, { "id": "R-SSC-9033235", "name": "Cargo of PEX5S,L translocates from the cytosol to the peroxisomal matrix", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033235", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033235" } ] }, { "id": "R-SSC-9033236", "name": "PEX5S,L:Cargo binds PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Module)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033236", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033236" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-6809800", "participant_name": "2E-octenoyl-CoA [peroxisomal matrix]", "crossref": [ { "id": "62242", "database": "ChEBI", "url": "" }, { "id": "ZINC000096014547", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-6809801", "participant_name": "3Z-octenoyl-CoA [peroxisomal matrix]", "crossref": [ { "id": "85640", "database": "ChEBI", "url": "" }, { "id": "ZINC000195443525", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RWZ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 415, "overlap": "1.0", "method": "AlphaFold", 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"https://www.uniprot.org/uniprotkb/K7GMY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATRNPPPQDYESDDDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVSGWCAGFLFQKVGKLAATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNIIEEATEFVKQNIVISSGFVGGFLLGLAS", "length": 155, "header": "tr|F1RWZ9-1|F1RWZ9_PIG Isoform 1 of FUN14 domain containing 1 OS=Sus scrofa OX=9823 GN=FUNDC1 PE=1 SV=1 CANONICAL=F1RWZ9-1" }, "isoforms": [ { "isoform_ac": "F1RWZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RWZ9/entry", "sequence": { "sequence": "MATRNPPPQDYESDDDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVSGWCAGFLFQKVGKLAATAVGGGFLLLQIASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNIIEEATEFVKQNIVISSGFVGGFLLGLAS", "length": 155, "header": "tr|F1RWZ9-1|F1RWZ9_PIG Isoform 1 of FUN14 domain containing 1 OS=Sus scrofa OX=9823 GN=FUNDC1 PE=1 SV=1 CANONICAL=F1RWZ9-1" }, "locus": { "chromosome": "X", "start_pos": 39737459, "end_pos": 39727587, "strand": "+", "evidence": [ { "database": 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"https://www.ensembl.org/id/ENSSSCP00000029231.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GMY2", "url": "https://www.uniprot.org/uniprotkb/K7GMY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518350", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518350", "resource": "KEGG Pathway" }, { "id": "R-SSC-8934903", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8934903", "resource": "Reactome", "description": "Receptor Mediated Mitophagy" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061HV22-1", "protein_name": "FUN14 domain-containing protein 1", "gene_name": "Fundc1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASRNPPPQDYESDDESYEVLDLTEYARRHHWWNRVFGHTSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQVASHSGYVQIDWKRVEKDVNKAKRQIKKRANKAAPEINNVIEEATEFIKQNIVISSGFVGGFLLGLAS", "length": 155 }, "evidence": [ { "id": "F1RWZ9", "url": "https://omabrowser.org/oma/group/F1RWZ9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BWM5-1", "protein_name": "FUN14 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"https://www.ensembl.org/id/ENSSSCP00000060951.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RX04", "url": "https://www.uniprot.org/uniprotkb/F1RX04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158124", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158124", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RSL3-1", "protein_name": "G protein-coupled receptor 82", "gene_name": "GPR82", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRNSTCVLHPSIATTVALPVIYSLLFITGSFGNILTAWVFSRQASTKRTQYIYLVNLVTANLLVCSTMPFLAGYFAKGHEWTYSSDVCRAAYHLGTTVMHVCMYVTITILCTIALSQYATLKKNNNARHSPAVTKSLYKRGLQKFRQPKFAKYFCIFIWLIVLCATITAIAFDAQARREQIFHTCYNTKVEIGEFTAKTAASFATACFFLFFLTVLLSYYSLTRHLSKIQKNTHFGQNHMIYRTVKRNILVIQIILTVCFLPYHIFKPIFYVLLPEEDCSRINYLVEIKNFLTCLCVSRSSIDPVMTLLIDKTFKKSLYSLFKKSIPDHHQRRADIFTEEIPPM", "length": 344 }, "evidence": [ { "id": "F1RX04", "url": "https://omabrowser.org/oma/group/F1RX04/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2LTU5-1", "protein_name": "Probable G-protein coupled receptor 82", "gene_name": "Gpr82", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNNNSTCIQPSMISTTALPIIYIFLCIIGLFGNSLAQWVFLTKIGKKTSTHVYLANLVTANLLVCTAMPFMGIYFLKGFYWKYQSLQCRLVNFLGTLSMHVSMFVSLLILSWIAISRYATLMKKESMQEATSCYERMFYGHLLKRFRQPNFARKMCIYIWGVVLVIIIPVILYYSVVEATEEGESQCYNRRMELGASISQIAGLIGTTFIGFSFLVVVTSYYSFVSHLRRVRTCTSITERDLTYRSVRKHLLIIQVLLVVCFLPYSIFKPIFYVLHQREDCQQLNYLIEAKNILTCLASARSSTDPIIFLLLDKTFKKTLHNLLTKS", "length": 327 }, "evidence": [ { "id": "F1RX04", "url": "https://omabrowser.org/oma/group/F1RX04/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A217-1", "protein_name": "G protein-coupled receptor 82", "gene_name": "Gpr82", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNNNSTCIQPSVISTTALPITYIFLCIVGLFGNSLAQWVFLTKIGKKTSTHIYLANLVTANLLVCTAMPFMGAYFLRGFYWKYQSVQCRLVNFLGTLSLHVSMFVSLIILSWIAISRYATLMKKESMQEATSCYERIFYGHLLKRFRQPKFARATCIYIWGVVLVVIIPVILYYSVVEATEDGESHCYNRRMELGASPSQIAGLIGTTFIGFSFLVVVTSYYSFVSHLRRVRTCTSITERDLTYRSVKRHLLIIQVLLVVCFLPYSIFKPIFYVLHQKEEDCQQLNYLIEAKNILTCLASARSSTDPIIFLLLDKTFKKTLYDLITKS", "length": 328 }, "evidence": [ { "id": "F1RX04", "url": "https://omabrowser.org/oma/group/F1RX04/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G5E6S1-1", "protein_name": "G protein-coupled receptor 82", "gene_name": "GPR82", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RX04", "url": "https://www.uniprot.org/uniprotkb/F1RX04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RX04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RX04" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 309, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": [] } ], 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"F1RX63", "url": "https://alphafold.ebi.ac.uk/entry/F1RX63", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR004299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MDWLQLF", "url": "https://omabrowser.org/oma/group/MDWLQLF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13906", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13906", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13906:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13906:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03062", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03062", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-422085", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-422085", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RX63", "url": "https://www.uniprot.org/uniprotkb/F1RX63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RX63-1", "url": "https://www.uniprot.org/uniprotkb/F1RX63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWLQLFFLHPVLFYQGAAFPFALLFNYLCITDSFSTRARYLFLLAGGGALAVAAMGAFAVLVFVPALGAVVLIHSLGPRHVHRPTFLFQMSWQTLCHLGLHYTEYYLQESPSTRFCITLSSLMLLTQRVTSLSLDIFEGKVEVASEAVGSESSLPKRLWKALPYCSYLLFFPALLGGPLCSFQRFQSRVQGPRSWDPRHSLWALTCGLQILGLECLKVAMRWAVSVGAGLTDCRHLQCVYVMWSMAGLFKLTYYSHWILDESLLQAAGFGSGFGGSTGEESFVPDADIWTLETTHKLSLFTRKWNHSTAQWLRRVFQQGRTWPLLQTFVFSAWWHGLHPGQVFGFLCWAVMVKADYLIHTFAKVSIRSQLMWLLYRTLTWAHTQLIIAYIILAVEARSLSSLWLLCNSYNSVFPMVYCILFFLLAKRKHKCN", "length": 433, "header": "tr|F1RX63-1|F1RX63_PIG Isoform 1 of Membrane bound O-acyltransferase domain containing 4 OS=Sus scrofa OX=9823 GN=MBOAT4 PE=4 SV=2 CANONICAL=F1RX63-1" }, "isoforms": [ { "isoform_ac": "F1RX63-1", "url": "https://www.uniprot.org/uniprotkb/F1RX63/entry", "sequence": { "sequence": "MDWLQLFFLHPVLFYQGAAFPFALLFNYLCITDSFSTRARYLFLLAGGGALAVAAMGAFAVLVFVPALGAVVLIHSLGPRHVHRPTFLFQMSWQTLCHLGLHYTEYYLQESPSTRFCITLSSLMLLTQRVTSLSLDIFEGKVEVASEAVGSESSLPKRLWKALPYCSYLLFFPALLGGPLCSFQRFQSRVQGPRSWDPRHSLWALTCGLQILGLECLKVAMRWAVSVGAGLTDCRHLQCVYVMWSMAGLFKLTYYSHWILDESLLQAAGFGSGFGGSTGEESFVPDADIWTLETTHKLSLFTRKWNHSTAQWLRRVFQQGRTWPLLQTFVFSAWWHGLHPGQVFGFLCWAVMVKADYLIHTFAKVSIRSQLMWLLYRTLTWAHTQLIIAYIILAVEARSLSSLWLLCNSYNSVFPMVYCILFFLLAKRKHKCN", "length": 433, "header": "tr|F1RX63-1|F1RX63_PIG Isoform 1 of Membrane bound O-acyltransferase domain containing 4 OS=Sus scrofa OX=9823 GN=MBOAT4 PE=4 SV=2 CANONICAL=F1RX63-1" }, "locus": { "chromosome": "15", "start_pos": 54910611, "end_pos": 54902583, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017255.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017255.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016793.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016793.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RX63", "url": "https://www.uniprot.org/uniprotkb/F1RX63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-422085", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-422085", "resource": "Reactome", "description": "Synthesis, secretion, and deacylation of Ghrelin" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IKL6-1", "protein_name": "Ghrelin O-acyltransferase", "gene_name": "Mboat4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDWLQLFFLHPISLYQGAAFPFALLFNYLCIMDSFSTRARYLFLLAGGGVLALAAMGPYALLIFISALCAVALVSLSGPQEVHRLTFSFQMGWQTLCHLGLHYTEYYLQEPAPVRFYIALSSLMLLTQRVTSLSLDIREGKVEAASGGTRNRSSLSVCPSETLPFASYLLFFPALLGGPLCSFQRFRACVERSSSLHPCLSLWALTRRGLQIVGLECLQVALRRVVSAGAGLDDCQQLECIYIMWSTAGLFKLTYYSHWILDDALLHAAGFGSETGQRSGEEGYIPDVDLWTLETTHRISVFARQWNRSTARWLRRLIFRNSQRWPVLQTFAFSAWWHGLHPGQVFGFLCWSVMVEADYLIHTFANLSISFWPLRLLYRAFTWAHTQLIIAYIMLAVEGRSLSFLSRLCCSYNSIFPGVYCVLLFLLVKRKQKCN", "length": 435 }, "evidence": [ { "id": "F1RX63", "url": "https://omabrowser.org/oma/group/F1RX63/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XGU5-1", "protein_name": "Membrane bound O-acyltransferase domain containing 4", "gene_name": "MBOAT4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRWADLLILLPAAWYQLAAFLFAALFHYLCALGHLSLTSRYIFLLAGGCLLAGTAMGSYATLLLIPAVSSVLMFLLVSPAYVHTWVFSLQMCWQTLCHLGLGSLVLESQDTRPAVTLSAIMLLTQKVTSLAMDIHEGTVLPQPGQGLLQRALPLCSYLLFFPALLGGPLCSFSKFQAQVMSLGAVPCPLRAVGWRYLGVLVLQVLRAWLEGWLPCMQGWASMGHMWAQALLFRLAYYSQWVLDEALLEAAGFGAAVEHRDLSGHDLWTLETTHRLSVFSRTWNRSTSLWLRRLVFQRCPVQPLLATFAFSAWWHGLRPGQIFGFLCWAIMVEADYRIHPFLSSRATSCVAKLLYRGTTWVFTQLIIAYIQMAVETESFSMLCLLWTSYNSILPLTYGLVLLLLLLFAQKPKQNRACPGLTRLAG", "length": 424 }, "evidence": [ { "id": "F1RX63", "url": "https://omabrowser.org/oma/group/F1RX63/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B1Q005-1", "protein_name": "Membrane-bound ghrelin O-acyltransferase MBOAT4", "gene_name": "Mboat4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDWLQFFFLHPVSLYQGAAFPFALLFNYLCITESFPTRARYLFLLAGGGVLALAAMGPYALLIFIPALCAVAMISSLSPQEVHGLTFFFQMGWQTLCHLGLHYKEYYLCEPPPVRFYITLSSLMLLTQRVTSLSLDISEGKVEAAWRGTRSRSSLCEHLWDALPYISYLLFFPALLGGSLCSFQRFQACVQRPRSLYPSISFWALTWRGLQILGLECLKVALRRVVSAGAGLDDCQRLECIYIMWSTAGLFKLTYYSHWILDDSLLHAAGFGSEAGQRPGEERYVPDVDIWTLETTHRISLFARQWNRSTAQWLKRLVFQRSRRWPVLQTFAFSAWWHGLHPGQVFGFLCWSVMVKADYLIHTFANGCIRSWPLRLLYRSLTWAHTQIIIAYVMLAVEGRSFSSLCRLCCSYNSIFPVTYCLLLFLLARRKHKCN", "length": 435 }, "evidence": [ { "id": "F1RX63", "url": "https://omabrowser.org/oma/group/F1RX63/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BAE4-1", "protein_name": "Membrane bound O-acyltransferase domain containing 4", "gene_name": "MBOAT4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDWLQLFFLDPVSLYQGAAFPFALLFNHLCVMDSFSTQARYLFLLAGGGALAVAAMGAFAVLVFIPALCTVVLIHSLGPQDVHRPTFLFQMTWQTLCHLGLHYTEYYLQEAPSTRFCITLSSLMLLTQKITSLSLDIREGKVVAPSGRIPNKNSLSEHLHAALPYLSYLLFFPALLGGPLCSFQRFQARVEGSSSLWSRHSFWALTWRALQILGLESLKVIVSGVVGVGAGLGGCRQLQCVFVLWSTAGLFKLTYYSHWLLDDALLRAAGFGSELGRSPGEEGLLPDADIWTLETTHRIALFARKWNQSTARWLRRLVFQQRRTWPLLQTFLFSAWWHGLHPGQVFGFLCWAVMVEADYLIHAFASVFISSWPMRLLYRALAWAHTQLIIAYIMLAVEARSLSSLWLLWNSYSSVFPTVYCILLLLLAKRKHKCN", "length": 435 }, "evidence": [ { "id": "F1RX63", "url": "https://omabrowser.org/oma/group/F1RX63/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C7A3-1", "protein_name": "Membrane-bound ghrelin O-acyltransferase MBOAT4", "gene_name": "Mboat4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1RX63", "url": "https://www.uniprot.org/uniprotkb/F1RX63" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine O-acyltransferase activity", "id": "GO:0016412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016412", "evidence": [ { "database": "UniProtKB", "id": "F1RX63", "url": "https://www.uniprot.org/uniprotkb/F1RX63" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid modification", "id": "GO:0030258", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030258", "evidence": [ { "database": "UniProtKB", "id": "F1RX63", "url": "https://www.uniprot.org/uniprotkb/F1RX63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], 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"header": "tr|A0A287AMF4-1|A0A287AMF4_PIG Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 24 OS=Sus scrofa OX=9823 GN=MED24 PE=1 SV=1 CANONICAL=F1RXB3-1" }, "locus": { "chromosome": "12", "start_pos": 22331779, "end_pos": 22309541, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057549.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057549.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045188.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045188.2" } ] } }, { "isoform_ac": "F1RXA9-1", "url": "https://www.uniprot.org/uniprotkb/F1RXA9/entry", "sequence": { "sequence": 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"length": 1007, "header": "tr|F1RXA9-1|F1RXA9_PIG Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 24 OS=Sus scrofa OX=9823 GN=MED24 PE=1 SV=3 CANONICAL=F1RXB3-1" }, "locus": { "chromosome": "12", "start_pos": 22331779, "end_pos": 22309541, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019035.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019035.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018530.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018530.4" } ] } }, { "isoform_ac": "F1RXB3-1", "url": "https://www.uniprot.org/uniprotkb/F1RXB3/entry", "sequence": { "sequence": "MKVVNLKQAILQAWKERWSDYQWSINMKKFFPKGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGDILANLSNPQLRSQAEQCGTLIRSIPTMLSVHSEQLHKTGFPTVHALVLLEGTMNLTGETQPLVEQLMMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTGELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNSAFEFLLKLTPLLDKADQRCNCDCTNFLLQECSKQGLLSEASMNNLMAKRKADREHAPQLKSDENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTHGSEESTKAASVRALLFDISFLMLCHVAQTYGSEVILSDSSTGAEVFFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNFSEMKLVQMKWNEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLNSENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPAMGMDSMPYWNLLPPKRIKEVLTDVFAKVLERGWVDSRSIHVFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASSRQKKRHREDIEDYISLFPLDDMQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGSRGSILQFMPFTTVSELVKVSAMSSPRVVLAITDLSLPLGRQVAAKAIAAL", "length": 988, "header": "tr|F1RXB3-1|F1RXB3_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 24 OS=Sus scrofa OX=9823 GN=MED24 PE=1 SV=3 CANONICAL=F1RXB3-1" }, "locus": { "chromosome": "12", "start_pos": 22331779, "end_pos": 22309541, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019040.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019040.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018535.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018535.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXB3", "url": "https://www.uniprot.org/uniprotkb/F1RXB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9841922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "resource": "Reactome", "description": "MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of transcription initiation by RNA polymerase II", "id": "GO:0060261", "url": 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thyroid hormone receptor binding", "id": "GO:0046966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046966", "evidence": [ { "database": "UniProtKB", "id": "F1RXB3", "url": "https://www.uniprot.org/uniprotkb/F1RXB3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "F1RXB3", "url": "https://www.uniprot.org/uniprotkb/F1RXB3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RXB3-F1", 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[], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNS4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4", "locus": { "chromosome": "12", "start_pos": 21952189, "end_pos": 21924226, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017470", "url": "https://www.ensembl.org/id/ENSSSCG00000017470" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017470", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017470", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521862", "url": "https://www.ncbi.nlm.nih.gov/gene/100521862", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521862", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521862", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SQPSMKF", "url": "https://omabrowser.org/oma/group/SQPSMKF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXE4", "url": "https://www.orthodb.org/?gene=F1RXE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08416", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08416", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8875513", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875513", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131518", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131518", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXE4-1", "url": "https://www.uniprot.org/uniprotkb/F1RXE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQVMSSPLLAGGPAVGLAPCEEPRRALRPTPSPGLPPQYPYYTTEGWGAQVLMAPAPCKGPPSRLQQAPQAGAKASCLLPSPGEQTSGALEELDSYIDFSLESLNQMILELDPTFQLLPPGPGSPWAEPTQSTTSRRKKEEPEALDIKYIEVTSARSRCHDGPQSCSSPSVTPPFGSPRSGGLLLSRDIPWETRSSSESLIFSGSQGRGHQRPSPPAGAPSSLPPSSPSISIPSMRHKASGPPGLGSPLVASPGLEKGVGGPAPQLGGRVSVLSSSLASDVSCVFGSSQSLLHSSISSHQSSSRSLESPASSSSSLHSFGPVSSHTRSSDLQVPSNPTPSMGQPRAPHSPSLAKEHASSCPPSIANSMVDIPIVLINGQPEPGSPPCQRTRGHQDFVRPGVASSSNPCPATRSHSQTLPDAPLTTSPEGPTRDMQPTMKFVMDTSKYWFKPSITREQAIELLRKEEPGAFIVRDSSSYRGSFGLALKVHEAPVPAQNRPGEDGSDLIRHFLIESSAKGVHLKGADEEPYFGSLSAFVCQHSIMALALPCKLVIPQKELGGGDGASDPSADGRASCLKKSAGCHALYLSSVSVETLSGALAVQKAITTALETDVLPTPTVVHFKVTEQGITLTDVQRKLFFRRHYPLATLRFCGMDPEHRKWQKYCKPSWIFGFVAKSQTESQENVCHLFAEYDPVQPASQVISLVGALLQDPEKM", "length": 716, "header": "tr|F1RXE4-1|F1RXE4_PIG Isoform 1 of Tensin 4 OS=Sus scrofa OX=9823 GN=TNS4 PE=3 SV=1 CANONICAL=F1RXE4-1" }, "isoforms": [ { "isoform_ac": "F1RXE4-1", "url": "https://www.uniprot.org/uniprotkb/F1RXE4/entry", "sequence": { "sequence": "MSQVMSSPLLAGGPAVGLAPCEEPRRALRPTPSPGLPPQYPYYTTEGWGAQVLMAPAPCKGPPSRLQQAPQAGAKASCLLPSPGEQTSGALEELDSYIDFSLESLNQMILELDPTFQLLPPGPGSPWAEPTQSTTSRRKKEEPEALDIKYIEVTSARSRCHDGPQSCSSPSVTPPFGSPRSGGLLLSRDIPWETRSSSESLIFSGSQGRGHQRPSPPAGAPSSLPPSSPSISIPSMRHKASGPPGLGSPLVASPGLEKGVGGPAPQLGGRVSVLSSSLASDVSCVFGSSQSLLHSSISSHQSSSRSLESPASSSSSLHSFGPVSSHTRSSDLQVPSNPTPSMGQPRAPHSPSLAKEHASSCPPSIANSMVDIPIVLINGQPEPGSPPCQRTRGHQDFVRPGVASSSNPCPATRSHSQTLPDAPLTTSPEGPTRDMQPTMKFVMDTSKYWFKPSITREQAIELLRKEEPGAFIVRDSSSYRGSFGLALKVHEAPVPAQNRPGEDGSDLIRHFLIESSAKGVHLKGADEEPYFGSLSAFVCQHSIMALALPCKLVIPQKELGGGDGASDPSADGRASCLKKSAGCHALYLSSVSVETLSGALAVQKAITTALETDVLPTPTVVHFKVTEQGITLTDVQRKLFFRRHYPLATLRFCGMDPEHRKWQKYCKPSWIFGFVAKSQTESQENVCHLFAEYDPVQPASQVISLVGALLQDPEKM", "length": 716, "header": "tr|F1RXE4-1|F1RXE4_PIG Isoform 1 of Tensin 4 OS=Sus scrofa OX=9823 GN=TNS4 PE=3 SV=1 CANONICAL=F1RXE4-1" }, "locus": { "chromosome": "12", "start_pos": 21950723, "end_pos": 21929368, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019019.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019019.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018514.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018514.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 173, "start_aa": "Thr", "end_pos": 173, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr173", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 31, "start_aa": "Thr", "end_pos": 31, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr31", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 339, "start_aa": "Thr", "end_pos": 339, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr339", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 432, "start_aa": "Thr", "end_pos": 432, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr432", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 617, "start_aa": "Thr", "end_pos": 617, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr617", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521862", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521862", "resource": "KEGG Pathway" }, { "id": "R-SSC-8875513", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875513", "resource": "Reactome", "description": "MET interacts with TNS proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZWA2-1", "protein_name": "Tensin 4", "gene_name": "TNS4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSQVIHSHVLRVGQSVCVPSQEGTQRLPTPCSYYSTDAWAEPGAVRCAAAPLPTRGLQGGHPTPQEPSLQWEDVGTEPNTHLGSPILDISIENLNRMILELDPSFQPLSCQPRKDVAVPTARGNTAGTPQHDVEAADIKYIEMTPTRAKCTEALQGSPSPFSRSPQSSGLLSHPAAPRGHCTNGSVVFSSPAWPDSPRSAPPGCAVSESIAMPLPRAGQSVSPRASPGADQLLKPLQAVRAQQRGSEVSLLSMSPGSDTSYVFGSSTHSLHASDPDAACPSPPGSMGSPQTSSPGTRSRSGEALCPPRPPAACPVPPSLSLKGQASSCPPSILPDVPVLLVNGCLEPGGVPLPGLSTAPPAPVQPSPGLSTLNNTLSAPVLTCGPDSPLWAGQPTLKFVMDTSKFWFKPTMSRDRAIQLLQDREPGAFLVRDSTSYRGSFGLAMKVPGVPGDESSDLVRHFLIESSAKGVHLRGASEELYFGSLPAFVYQHAITPLALPCALRIPTQDLADGEDSPDCGPDPTQSPLKRSAECNALYLGTVSTETLVGAPAVQKATSCTLELDPLPTPTLVRLRVSEQGVTLTDVQRRVFFRRHYPLTAVRFCGMDPEGRKWQKYCKSSRIFGFVAKSQTDSENLCHLFAEYDPVQSAALIIDLITKLLPAP", "length": 662 }, "evidence": [ { "id": "F1RXE4", "url": "https://omabrowser.org/oma/group/F1RXE4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q32PJ7-1", "protein_name": "Tensin-4", "gene_name": "TNS4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSQVMSSPLLAGGPAVGLAPCEEPRRVLHPAPSPSLPPPCPYYTTEGWGAQALMAPMPCKGPPGRLQPAPQAGANASCLLKAPGEQVSGAQEDLDSYIDFSLESLNQMILELDPTFQLLPPGPGGPEAQPTQSTTLGKKKEEPEALDIKYIEVTSTRSRCHDGPRSCCSPSVTPPFGSPRTGGLLLSRDLPRETRSSSESLIFSGSQGRGHQHPAPPSAVPSSHPPTSPSISIPGMGSKASGPHGLGSPLVASPSLEKGLGGQGPQLSSRVSMLSGSPASDISYVFGSSQSLLHSSISSHQSSSRSLESPSSSSSSLNNLGPVSLYTRASDLQVPSNATPSMGQPRATRSPPLAKEHASSCPPSITNSMTDIPIVLINGFPEPGSPPSQRTPGPQDFVRPGATSSSMPCPATRSHSQTLPEAPPTASPEGPARDMQPTMKFVMDTSKYWFKPSISREQAIELLRKEEPGAFIVRDSSSYRGSFGLALKVQEAPTPAQSRPGEDSSDLIRHFLIESSAKGVHLKGADEEPYFGSLSAFVCQHSIMALALPCKLVIPQKELGGGDGASDPSADGQASCLKKSAGCHALYLSSVSVETLSGALAVEKAISATLERDVLPTPTVVHFKVTEQGITLTDVQRKVFFRRHYPLATLRFCGMDPEQRKWQKYCKPSRIFGFVAKSQTESQENVCHLFAEYDTLQPASQVIRLVGALLQDPERM", "length": 716 }, "evidence": [ { "id": "F1RXE4", "url": "https://omabrowser.org/oma/group/F1RXE4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4V8I3-1", "protein_name": "Tensin-4", "gene_name": "Tns4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSSLLTGGHVVSLTPHEESRMALHPTPSHDLPALCPYYTTESWGTQPLMDPTLCKGSSNRLQQAQQAEARAQCLLQCPGEQASGASQDLDSCIDFSLEALNKMILELDPTFQLLPSGIAGPQAEPTNSVASRTKKEEPDALDIKYIEVTSTRSRCLDSPQRCSSPCVTPPFGSPRSGGLFLSRDIPRETRSSSNESLIFSGNQGRGSSPHTPSSLSNSIPCRESRASGSPLATPPGWEKGLRAPQWGSRVSTLSASPVSDISYVFGSNQSLPHSSLSSYPPSSRSLGSPASSSSSLHSLDRGSQCVRSSDAQVPSNPIVGMGQPQAVPSTPVAKEQASSCPPSVTNSMADIPIVLINGNPEPQSPPAQQTPRYQDSVQSRATSPSHLCQATKSHSKTLPDVPLTSPSHLCQATKSHSKTLPDVPLTASPESPAKDMQPTMKFVMDTSKYWFKPSITREQAINLLRTEKPGTFVIRDSSSYRGSFGLALKVQETPASAPNRPGEDSTDFIRHFLVESSAKGVHLKGADEEPYFGSLSAFVCQHSIMALALPCKLTIPQKELGGAEPASDSPTHGQTSCLKISAGCHTLYLTSVSVETLSGALAVQKAISVMLERDVLPTPTVVHFKVTEQGITLTDVQRKVFFRRHYPLIALRFCGMDPEQRKWQKYCKPSRIFGFVAKSQTEPQENACHLFAEYDAAQPASQVISLVTALLKDTERV", "length": 718 }, "evidence": [ { "id": "F1RXE4", "url": "https://omabrowser.org/oma/group/F1RXE4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BZ33-1", "protein_name": "Tensin-4", "gene_name": "Tns4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSSLLAGGHMVSLTPCEESRMALHPTPSPGLPALCPYYTTESWGTQPLMAPTLRKGSSDRLQQAQQAEARAHCLLQGPGEQASGASQDLESCIDFSLEALNQMILEIDPTFQLLPSGTAGPQAESTNSIMSRNKKEEPEALDIKYIEVTSTRSRYLDGPQRCSSPCATPPFGSPRSGSLFLSRDIPRETRSSSNESLIFSGNQGRGPSPLTPSSLSNAIPCRESRTSGSPLATPPGWEKGLRAPQRGSRVSILSASPVSDVSYVFGSNQSLPHSSLSSYPSSSRSLGSPASSSSSLHSLDRGSQCGRPSDAQAPSNPILGMGQPQAVQSTPVAKEQASSCPASVTNSMADIPIVLINGSPEPQSPPAQRTPGHQDSVQSRVTSPSHLCQAIKSPSKTLPDVPLPASPDGPAKDMQPTMKFVMDTSKYWFKPSITREQAINLLRTEKPGAFVIRDSSSYRGSFGLALKVQETSASAPNRPGEDSSDLIRHFLIESSAKGVHLKGADEEPYFGSLSSFVCQHSIMALALPCKLTIPQKELGGAEPASDSPTHGQTSCLKISAGCHTLYLSSVSVETLSGALAVQKAISVTLERDVLPTPTVVHFKVTEQGITLTDVQRKVFFRRHYPLSALRFCGMDPEQRKWQKYCKPSRIFGFVAKSQTEPQENVCHLFAEYDAVQPASQVISLVTALLQDTERM", "length": 696 }, "evidence": [ { "id": "F1RXE4", "url": "https://omabrowser.org/oma/group/F1RXE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZW8-1", "protein_name": "Tensin-4", "gene_name": "TNS4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSQVMSSPLLAGGHAVSLAPCDEPRRTLHPAPSPSLPPQCSYYTTEGWGAQALMAPVPCMGPPGRLQQAPQVEAKATCFLPSPGEKALGTPEDLDSYIDFSLESLNQMILELDPTFQLLPPGTGGSQAELAQSTMSMRKKEESEALDIKYIEVTSARSRCHDGPQHCSSPSVTPPFGSLRSGGLLLSRDVPRETRSSSESLIFSGNQGRGHQRPLPPSEGLSPRPPNSPSISIPCMGSKASSPHGLGSPLVASPRLEKRLGGLAPQRGSRISVLSASPVSDVSYMFGSSQSLLHSSNSSHQSSSRSLESPANSSSSLHSLGSVSLCTRPSDFQAPRNPTLTMGQPRTPHSPPLAKEHASSCPPSITNSMVDIPIVLINGCPEPGSSPPQRTPGHQNSVQPGAASPSNPCPATRSNSQTLSDAPFTTCPEGPARDMQPTMKFVMDTSKYWFKPNITREQAIELLRKEEPGAFVIRDSSSYRGSFGLALKVQEVPASAQSRPGEDSNDLIRHFLIESSAKGVHLKGADEEPYFGSLSAFVCQHSIMALALPCKLTIPQRELGGADGASDSTDSPASCQKKSAGCHTLYLSSVSVETLTGALAVQKAISTTFERDILPTPTVVHFKVTEQGITLTDVQRKVFFRRHYPLTTLRFCGMDPEQRKWQKYCKPSWIFGFVAKSQTEPQENVCHLFAEYDMVQPASQVIGLVTALLQDAERM", "length": 715 }, "evidence": [ { "id": "F1RXE4", "url": "https://omabrowser.org/oma/group/F1RXE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "F1RXE4", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXE4" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 449, "end_pos": 556, "start_aa": "Trp", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 31, 173, 339, 432, 617 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", 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51918.0 }, "refseq": { "ac": "XP_003131530", "name": "keratin, type I cytoskeletal 26", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131530" }, "gene_names": [ { "name": "KRT26", "type": "recommended", "evidence": [ { "id": "F1RXG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXG0" } ] }, { "name": "KRT26", "type": "synonym", "evidence": [ { "id": "XP_003131530", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131530" } ] } ], "protein_names": [ { "name": "Keratin 26", "type": "synonym", "evidence": [ { "id": "F1RXG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXG0/entry#names_and_taxonomy" } ] }, { "name": "keratin, type I cytoskeletal 26", "type": "synonym", "evidence": [ { "id": "XP_003131530", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131530" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXG0", "url": "https://www.uniprot.org/uniprotkb/F1RXG0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT26", "url": "https://www.uniprot.org/uniprotkb/F1RXG0", "locus": { "chromosome": "12", "start_pos": 21695847, "end_pos": 21689145, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017463", "url": "https://www.ensembl.org/id/ENSSSCG00000017463" } ] } } ], "crossref": [ { "id": "F1RXG0", "url": "https://alphafold.ebi.ac.uk/entry/F1RXG0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017463", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017463", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523992", "url": "https://www.ncbi.nlm.nih.gov/gene/100523992", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523992", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523992", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IQCETLS", "url": "https://omabrowser.org/oma/group/IQCETLS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXG0", "url": "https://www.orthodb.org/?gene=F1RXG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239:SF162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239:SF162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131530", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131530", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RXG0", "url": "https://www.uniprot.org/uniprotkb/F1RXG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXG0-1", "url": "https://www.uniprot.org/uniprotkb/F1RXG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFPISSGSRRLCSPAGAGRWSGGRTGFRAGNACGGSRAGSSFSCTLGSVSSGGGFYNGGRGLGSGICAGFLGKEHSLLSRNERMTMQNLNDRLASYLDHVRALEEANADLEQKIKGWYEKYEPGPCRGLDQDYHRYFSVIEDLKRQIIAETSCNAGVVLQKDNARLTANDFRLKYENERALRQSVEADISGLHGGMDELALCTTDLELQCDALRKELMCLKKNHAEEMKVLQCSAAGNVTVEINAAPGVDLTVLLNDMRAEYEALAEQNHKDAEARFHQKRASLQQQISDHAGAATTARNELRELKCNLQSLEIELQSLMAMKYSHECSLAETEGSYCLQLQQIQEQIGALEERLQQIRTETEGQKLEYERLLDVKIFLEKEIETYCKLIDGGERKSNSTCYKSKGYGPINSENQVKDSKEETVVKTVVGELDQLGSILSLRVHSVEEKSPKISSITTEQRVPSKVPK", "length": 469, "header": "tr|F1RXG0-1|F1RXG0_PIG Isoform 1 of Keratin 26 OS=Sus scrofa OX=9823 GN=KRT26 PE=4 SV=1 CANONICAL=F1RXG0-1" }, "isoforms": [ { "isoform_ac": "F1RXG0-1", "url": "https://www.uniprot.org/uniprotkb/F1RXG0/entry", "sequence": { "sequence": "MPFPISSGSRRLCSPAGAGRWSGGRTGFRAGNACGGSRAGSSFSCTLGSVSSGGGFYNGGRGLGSGICAGFLGKEHSLLSRNERMTMQNLNDRLASYLDHVRALEEANADLEQKIKGWYEKYEPGPCRGLDQDYHRYFSVIEDLKRQIIAETSCNAGVVLQKDNARLTANDFRLKYENERALRQSVEADISGLHGGMDELALCTTDLELQCDALRKELMCLKKNHAEEMKVLQCSAAGNVTVEINAAPGVDLTVLLNDMRAEYEALAEQNHKDAEARFHQKRASLQQQISDHAGAATTARNELRELKCNLQSLEIELQSLMAMKYSHECSLAETEGSYCLQLQQIQEQIGALEERLQQIRTETEGQKLEYERLLDVKIFLEKEIETYCKLIDGGERKSNSTCYKSKGYGPINSENQVKDSKEETVVKTVVGELDQLGSILSLRVHSVEEKSPKISSITTEQRVPSKVPK", "length": 469, "header": "tr|F1RXG0-1|F1RXG0_PIG Isoform 1 of Keratin 26 OS=Sus scrofa OX=9823 GN=KRT26 PE=4 SV=1 CANONICAL=F1RXG0-1" }, "locus": { "chromosome": "12", "start_pos": 21695847, "end_pos": 21689199, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019011.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019011.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018506.1", "url": "https://www.ensembl.org/id/ENSSSCP00000018506.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXG0", "url": "https://www.uniprot.org/uniprotkb/F1RXG0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523992", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523992", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JZM4-1", "protein_name": "Keratin 26", "gene_name": "Krt26", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFRFSGGSRVCSRAGSVRLSRGGAGFVAGNVCVGPGAESSFSCTLAGISSGGSFGNEGSSRGNSVGFINNEPGLFSGNEKVAMQNLNDRLALYLNHVSSLEEANTDLEKKIEDWYEKCRPGKGRRLDHDCSRYFPVIEDLKRQILSMTTCNANLVLQNDNARLTADDFKMKYENELALHQSVEADTNGLRRVLDELTLSTTDLEIQREALSEELTYLQKNHEEEMGVLQNASGGNINVEMNAAPGLDLTAMLNNMRAEYEDLAEQNRKDAEASFKEKSASLQQQISDDAGAITAARNELMELKRNLQTLEIELQSITAMKQSYESSLAETEGNYYAQLQQIQEQIGLREEQLQQTRTETESQKLEHEQLLGIKTCLEKEIDTYCNLLDREEQKSESTGYKPKDRKPASEVNDSAEETFARTVAEELDQLGNLLSLRVHSVEEKSSKISNITMEQWLPSKAP", "length": 462 }, "evidence": [ { "id": "F1RXG0", "url": "https://omabrowser.org/oma/group/F1RXG0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6H712-1", "protein_name": "Keratin, type I cytoskeletal 26", "gene_name": "KRT26", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFRLSSGSRRLCSPAGSGQLTGGRTGFRAGNACGGLGAGSSFSGPLGSVSSRGSFSHGGGGLGSGVCTGFLENEHGLLPGNEKVTLQNLNDRLASYLDHVCTLEEANADLEQKIKGWYEKYGPGSGRQLAYDCSKYFSVTEDLKRQIISVTTCNASIALQNENARLTADDFRLKYENELALNQSVEADINGLHRVMEELTLCTSDLEIQCEALSEELTCLKKNHQEEMKVMQGAAGGNVNVEINAAPGVDLTVLLNNMRAEYEDLAEQNREDAEAWFNEKSTSLHQQISDDAGAATAARNELMELKRNLQTLEIELQSLMAMKHSYECSLAETESNYCHQLQQIQEQIGATEDQLQQIRMETEGQKLEHERLLDVKIFLEKEIEMYCKLIDGEGRKSKSTYCKSEGRGPKNSENQVKDSKEEAVVKTVVGELDQLGSVLSLRVHSVEEKSSKISNITMEQRLPSKVPQ", "length": 469 }, "evidence": [ { "id": "F1RXG0", "url": "https://omabrowser.org/oma/group/F1RXG0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3TRJ4-1", "protein_name": "Keratin, type I cytoskeletal 26", "gene_name": "Krt26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFRFSGRSRVCSRAGSVRLSRGGAGFVAGNVCVGPGAEGSFSCTLGGLSSGGSFASEGSGRGSSIGFLNNEPGLFSGNEKVAMQNLNDRLALYLNHVSALEEANTDLEKKIEGWYEKCGPGRGRRLDHDCSRYFSVIEDLKRQILSMTTCNANLVLQNDNARLTADDFKMKYENELALHQSVEADTNGLRRVLDELTLSTTDLEIQREALSEELTYLQKNHEEEMVVLQNASGGNINVEMNAAPSVDLTAMLNNMRAEYEDLAEQNRKDAEASFKEKSASLQQQISDDAGAATAARNELMELKRNLQTLEIELQSITAMKQSYENSLAETEGNYYAQLQQIQEQIGAREEQLQQIRTETEGQKLEHEQLLGIKTCLEKEIDTYCNLLDGEEQRSESTSYKPKDGKPASEFNDSAEETFARTVAEELDQLGNLLSLRVHSVEEKSSKISNITMEQRVPSKAP", "length": 462 }, "evidence": [ { "id": "F1RXG0", "url": "https://omabrowser.org/oma/group/F1RXG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7Z3Y9-1", "protein_name": "Keratin, type I cytoskeletal 26", "gene_name": "KRT26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"url": "https://omabrowser.org/oma/group/F1RXG2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6BLY7-1", "protein_name": "Keratin, type I cytoskeletal 28", "gene_name": "Krt28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLRFSGGSRHVGIQSGSLRPPSGGAGFAGSSVAGGSVAGSGFSWALGGTLGSAPGGSHATGALGNVSGVCFIGSEGGLLSGNEKVTMQNLNNRLASYLDNVKALEEANSELERKIKTWHEKYGPGSCRGLDRDYSKYHLTIEDLKSKIISSTAANANIILQIDNARLAADDFRLKYENELTLHQNVEADINGLRRVLDELTLCRTDQELQYESLSEEMTYLKKNHEEEMKVLQCAAGGNVNVEMNAAPGVDLTVLLNNMRAEYEALAEQNRRDAEAWFQEKSATLQQQISNDLGAATSARTELTELKRSLQTLEIELQSLSATKHSLECSLAETEGNYCSQLAQIQAQISALEEQLHQVRTETEGQKLEHEQLLDIKAHLEKEIETYCRLIDGDENSCSVSKGFESGTSGNSPKDVSKTTLVKTVVEEIDQRGKVLSSRIHSIEEKMSKMSNGKAEQRVPF", "length": 462 }, "evidence": [ { "id": "F1RXG2", "url": "https://omabrowser.org/oma/group/F1RXG2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q148H6-1", "protein_name": 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"hair follicle morphogenesis", "id": "GO:0031069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031069", "evidence": [ { "database": "UniProtKB", "id": "F1RXG2", "url": "https://www.uniprot.org/uniprotkb/F1RXG2" } ], "pmid": "" }, { "name": "morphogenesis of an epithelium", "id": "GO:0002009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002009", "evidence": [ { "database": "UniProtKB", "id": "F1RXG2", "url": "https://www.uniprot.org/uniprotkb/F1RXG2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "F1RXG2", "url": "https://www.uniprot.org/uniprotkb/F1RXG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RXG2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 463, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RXG2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RXG2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXG2" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 400, "start_aa": "Glu", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 413, "end_pos": 415 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXM4-1", "uniprot_ac": "F1RXM4", "uniprot_id": "F1RXM4_PIG", "mass": { "chemical_mass": 78869.0, "monoisotopic_mass": 78869.0 }, "refseq": {}, "gene_names": [ { "name": "PWWP3B", "type": "recommended", "evidence": [ { "id": "F1RXM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXM4" } ] } ], "protein_names": [ { "name": "PWWP domain containing 3B", "type": "synonym", "evidence": [ { "id": "F1RXM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXM4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXM4", "url": "https://www.uniprot.org/uniprotkb/F1RXM4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PWWP3B", "url": "https://www.uniprot.org/uniprotkb/F1RXM4", "locus": { "chromosome": "X", "start_pos": 86814625, "end_pos": 86785325, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012548", "url": "https://www.ensembl.org/id/ENSSSCG00000012548" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012548", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012548", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06080", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06080", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100739251", "url": "https://www.ncbi.nlm.nih.gov/gene/100739251", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR035504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739251", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739251", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KYRKHEG", "url": "https://omabrowser.org/oma/group/KYRKHEG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXM4", "url": "https://www.orthodb.org/?gene=F1RXM4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31333", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31333", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31333:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31333:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF20884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20887", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20887", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RXM4", "url": "https://www.uniprot.org/uniprotkb/F1RXM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXM4-1", "url": "https://www.uniprot.org/uniprotkb/F1RXM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAEYVLCNWQDQLWPAKVLSRSEASSNSKRKKTFSLEVQILLLDEKIKVESTETKILNKSQVEAIVSSLAAESEASDPPREETAYGRALKAALDILNERTNLIQASSSDEEENPTLSQNALQKLSDSPPHKKYRKHEGDLPKCLEENENPPSLLVSSESDDSLSDDKSQVRAIIDAIPSEMETKSSQDFSWCQTFPSLSEDEEEKESKKKIDISAVMPLHSTIKEEDVCVKEEKFSPPLPLDYFTVPKALKEEAEDICPEAPAISSECSTFTENIEDPGEGPSNPCSGTSQNQPTVESETGACARPSSWECQVSLSASSRAMDYSLLLGNNERNLQRLDFEDLGEERQASDKSVHVSSIDASILDDNEEDEELPRFLFHYEPRSFETGMIVWFKYQKYPFWPAVVKSIRRKERKASVLFVEANMNPEKRGIRVPFRRLKKFDCKEKQALVDQAREEYSESIDWCISLICDYRVRIGCGSFAGSFLEYYAADISYPLRKVIKQDTFRNLFPKLQNENPTESMVVTSQTKKMSFQKILPDRMKSARDRANKNLVDFIVNAKGTESHLLAILKGTKGSRWLKSFLNANRFTPCIETYFEDEDQLDEVVKYLQEIYKQIDEKMLTLIRDDKIKFILEVLLPEAIICSISAVDGLDYKAAEAKYLKGPSLGYRERELFDAKIIFEKRRKPLTNEAR", "length": 692, "header": "tr|F1RXM4-1|F1RXM4_PIG Isoform 1 of PWWP domain containing 3B OS=Sus scrofa OX=9823 GN=PWWP3B PE=3 SV=1 CANONICAL=F1RXM4-1" }, "isoforms": [ { "isoform_ac": "F1RXM4-1", "url": "https://www.uniprot.org/uniprotkb/F1RXM4/entry", "sequence": { "sequence": "MEAEYVLCNWQDQLWPAKVLSRSEASSNSKRKKTFSLEVQILLLDEKIKVESTETKILNKSQVEAIVSSLAAESEASDPPREETAYGRALKAALDILNERTNLIQASSSDEEENPTLSQNALQKLSDSPPHKKYRKHEGDLPKCLEENENPPSLLVSSESDDSLSDDKSQVRAIIDAIPSEMETKSSQDFSWCQTFPSLSEDEEEKESKKKIDISAVMPLHSTIKEEDVCVKEEKFSPPLPLDYFTVPKALKEEAEDICPEAPAISSECSTFTENIEDPGEGPSNPCSGTSQNQPTVESETGACARPSSWECQVSLSASSRAMDYSLLLGNNERNLQRLDFEDLGEERQASDKSVHVSSIDASILDDNEEDEELPRFLFHYEPRSFETGMIVWFKYQKYPFWPAVVKSIRRKERKASVLFVEANMNPEKRGIRVPFRRLKKFDCKEKQALVDQAREEYSESIDWCISLICDYRVRIGCGSFAGSFLEYYAADISYPLRKVIKQDTFRNLFPKLQNENPTESMVVTSQTKKMSFQKILPDRMKSARDRANKNLVDFIVNAKGTESHLLAILKGTKGSRWLKSFLNANRFTPCIETYFEDEDQLDEVVKYLQEIYKQIDEKMLTLIRDDKIKFILEVLLPEAIICSISAVDGLDYKAAEAKYLKGPSLGYRERELFDAKIIFEKRRKPLTNEAR", "length": 692, "header": "tr|F1RXM4-1|F1RXM4_PIG Isoform 1 of PWWP domain containing 3B OS=Sus scrofa OX=9823 GN=PWWP3B PE=3 SV=1 CANONICAL=F1RXM4-1" }, "locus": { "chromosome": "X", "start_pos": 86812909, "end_pos": 86810834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089021.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089021.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065782.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065782.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXM4", "url": "https://www.uniprot.org/uniprotkb/F1RXM4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739251", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739251", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B5DEG0-1", "protein_name": "PWWP domain containing 3B", "gene_name": "Pwwp3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGEYVLCSWKDQLWPAKVLDRSESPSDSKRKKTLSVEVEILSLDEKITVESKDTKVLTKSAVEAIMSSLTVQSEVSFTPTEETAYERSLKMALEIVEERTNQSHESMAEEQHMATASENVPQQPPDSPPHKKFRKLESNLQEDSASMLLCSESDDSLSDEKLQVHTTSENMPSEVEMKSENLSCCQTYPSFSDDDDKKEEKKKIDISAIMSVNLSLKEESEFIKEEKFVPSSEDLAVPKEESQDILPDAPAVSSECFIVSENNMEDPGEGPSNQNPGSYGSQSQSTVESDVGAETSTAGCSGDYQVSLPARDTVNSDLLLQRLDLEDLEEEARASGKLLSLNPACAAALENDDEDDDEDLPRFILRYETRAFETGMIVWFKYQKYPFWPAVIKSIRRKERKASVLLVEADMNPQKRGVRVSLRRLKKYDCKEKQALVEKAREEYKESIDWCVSLICDYRVRLGCGSFTGSFFEYYAADISYPVRKIIKQDTFRNIFPKLYNEDAGEQLPVASHAKRVSFRKILPDRMKPARDRANKNLVDFIVNAKGTEDHLLGILKGTKKSKWLKSFLNAKSFTPCIETYFEDEDQLDEVVKYLQEIYKQIDQKMLTLIKDDKIKFVLEVLLPEAIICSISAVDGLDYEAAEAKYLKGPSLGYRERELYDSKILFEKRRRSLPNEGR", "length": 679 }, "evidence": [ { "id": "F1RXM4", "url": "https://omabrowser.org/oma/group/F1RXM4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BJ16-1", "protein_name": "PWWP domain containing 3B", "gene_name": "PWWP3B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDAEYVLCNWQDQLWPAKVLSRSEASSNSKRKKVFSLEVQILSLDEKIQMESTETKILTKSQVEAIASSLATQSEVSDPPGEETAYARSLKMALDILNERTNLIQVSSSDEEETTILSQNIPQKPSDSPPRKKYRKHEGEGDLPKCLEENENSTILLVSSESDDSLDDDKSQVHAMIDNIPNETETKSSQNLSWCQTFPSLLEDEDEKESKKKIDLSILPLLSTIKEEDVYVKEEKFSPTLPSDGFIVPKALKEEPEDIYPEALAASSECSAFSENIEDPGEGPSDPCSVASQNQPTVESEMDAEAFPQPSSQEQQVSFSASSHSGDYSLLGSNERNLQRLDFEEFEEEFQASDKSARISSIAASILDDDEEDEELPRFLFNYEQRSFETGMIVWFKYQKYPFWPSVIKSIRRKERKASVVFVEANMNPEKRGVRVPFRRLKKFDCKEKQALVEKAREEYSESIDWCISLICDYRVRLGCGSFAGSFFEYYAADISYPVRKIIKQDTFRNLFPKLQNENTGGSMSVTSQTKKMSFQKLLPDRMKSARDRANKNLVDFIVNAKGTESHLLAILNGTKGSRWLKSFLNAHRFTPCIETYFEDEDQLDEVVKYLQEVYKQIDEKMLTRIRNDKIKFILEVLLPEAIICSISAVDGLDYKAAEAKYLKGPSLGYRERELFDSKILFEKRRKPLTKEDH", "length": 694 }, "evidence": [ { "id": "F1RXM4", "url": "https://omabrowser.org/oma/group/F1RXM4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4VA55-1", "protein_name": "PWWP domain-containing DNA repair factor 3B", "gene_name": "Pwwp3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGKYVLCNWKDQLWPAKVLDRSESPSESKRKNTSSLEVEILSLDEKITVESTDTKVLSKSAVEAIMSSLAVQSEVIIAPREETAYERSLKMALEMVKEGTNLSQESMSEEQPTATASENVPEQPPDSPPHKKFRKLESNTQEDSASILLCSESDDSMTDDKLQVHTTGESMPSEMDTKATENLGCCQTDPSLADEDDKKEEKKKIDISAIMSVNLSLKEESEYIKEEKFVPSSEDLTVPKEESQDILPEAPLAVSSECSIVSENNMEDPGEGPSNQNLVSYANQNQSSVESDVGAETSTAGCSGDFQVSLPTRDTVSSDLLLQRLDLEDLEEEARASGKLLSLNPASAAALENDNEDDDEDLPRFILHYETRAFETGMIVWFKYQKYPFWPAVIKSIRRKERKASVLLVEADMSPQKKGVRVSLRRLKKYDCKEKQALVEKAREEYRESIDWCVSLICDYRVRLGCGSFTGSFFEYYAADISYPVRKIIKQDTFRNIFPKLYNENVGEQLPMASQAKRVSFQKILPDRMKPARDRANKNLVDFIVNAKGTEDHLLGILKGTKKSKWLKSFLNAKSFTPCIETYFEDEDQLDEVVKYLQEIYKQIDQKMLTLIKDDKIKFVLEVLLPEAIICSISAVDGLDYEAAEAKYLKGPSLGCRERELYDSKILFEKRRRSLPNEGH", "length": 681 }, "evidence": [ { "id": "F1RXM4", "url": "https://omabrowser.org/oma/group/F1RXM4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5H9M0-1", "protein_name": "PWWP domain-containing DNA repair factor 3B", "gene_name": "PWWP3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESEYVLCNWKDQLWPAKVLSRSETSSNSKRKKAFSLEVQILSLDEKIKLDSTETKILNKSQIEAIAASLGLQSEDSAPPTEETAYGRSLKVALGILNERTNLSQASTSDEEEITMLSQNVPQKQSDSPPHKKYRKDEGDLPGCLEERENSACLLASSESDDSLYDDKSQAPTMVDTIPSEVETKSLQNSSWCETFPSLSEDNDEKENKNKIDISAVMSVHSAVKEESACVKDEKFAPPLSPLSSDMLIMPKALKEESEDTCLETLAVPSECSAFSENIEDPGEGPSNPCLDTSQNQPSMESEMGAAACPGSCSRECEVSFSASNPVWDYSHLMSSERNFQRLDFEELEEEGQASDKSLLPSRINLSLLDDDEEDEELPRFILHYETHPFETGMIVWFKYQKYPFWPAVIKSIRRKERKASVLFVEANMNSEKKGIRVNFRRLKKFDCKEKQMLVDKAREDYSESIDWCISLICDYRVRIGCGSFTGSLLEYYAADISYPVRKETKQDTFRNKFPKLHNEDAREPMAVTSQTKKMSFQKILPDRMKAARDRANKNLVDFIVNAKGTENHLLAIVNGTKGSRWLKSFLNANRFTPCIETYFEDEDQLDEVVKYLQEVCNQIDQIMPTWIKDDKIKFILEVLLPEAIICSISAVDGLDYEAAEAKYLKGPCLGYRERELFDAKIIYEKRRKAPTNEAH", "length": 696 }, "evidence": [ { "id": "F1RXM4", "url": "https://omabrowser.org/oma/group/F1RXM4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXM4" }, { "id": "PF20884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MUM1-like PWWP", "eco_id": "ECO_0000259", "start_pos": 386, "end_pos": 465, "start_aa": "Phe", "end_aa": "Cys", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RXM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXM4" }, { "id": "PF20887", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20887" }, { 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXQ7-1", "uniprot_ac": "F1RXQ7", "uniprot_id": "F1RXQ7_PIG", "mass": { "chemical_mass": 27587.0, "monoisotopic_mass": 27587.0 }, "refseq": { "ac": "XP_020936421", "name": "tetraspanin-7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936421" }, "gene_names": [ { "name": "TSPAN7", "type": "recommended", "evidence": [ { "id": "F1RXQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7" } ] }, { "name": "TSPAN7", "type": "synonym", "evidence": [ { "id": "XP_020936421", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936421" } ] } ], "protein_names": [ { "name": "Tetraspanin", "type": "recommended", "evidence": [ { "id": "F1RXQ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7/entry#names_and_taxonomy" } ] }, { "name": "tetraspanin-7", "type": "synonym", "evidence": [ { "id": "XP_020936421", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936421" } ] } ], "function": [ { "annotation": "May be involved in cell proliferation and cell motility.", "evidence": [ { "database": "UniProtKB", "id": "F1RXQ7", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7#function" }, { "database": "UniProtKB", "id": "ARBA00056010", "url": "https://www.uniprot.org/uniprotkb/ARBA00056010#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXQ7", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSPAN7", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7", "locus": { "chromosome": "X", "start_pos": 34660212, "end_pos": 34522933, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012238", "url": "https://www.ensembl.org/id/ENSSSCG00000012238" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012238", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012238", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03161", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03161", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100526026", "url": "https://www.ncbi.nlm.nih.gov/gene/100526026", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526026", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526026", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NWSTSHY", "url": "https://omabrowser.org/oma/group/NWSTSHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXQ7", "url": "https://www.orthodb.org/?gene=F1RXQ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282:SF257", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282:SF257", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416993", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416993", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020936421", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936421", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RXQ7", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXQ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV", "length": 249, "header": "tr|F1RXQ7-1|F1RXQ7_PIG Isoform 1 of Tetraspanin OS=Sus scrofa OX=9823 GN=TSPAN7 PE=3 SV=3 CANONICAL=F1RXQ7-1" }, "isoforms": [ { "isoform_ac": "F1RXQ7-1", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7/entry", "sequence": { "sequence": "MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDCNPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV", "length": 249, "header": "tr|F1RXQ7-1|F1RXQ7_PIG Isoform 1 of Tetraspanin OS=Sus scrofa OX=9823 GN=TSPAN7 PE=3 SV=3 CANONICAL=F1RXQ7-1" }, "locus": { "chromosome": "X", "start_pos": 34659024, "end_pos": 34522973, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033070.3", "url": "https://www.ensembl.org/id/ENSSSCT00000033070.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031024.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXQ7", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526026", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526026", "resource": "KEGG Pathway" }, { "id": "R-SSC-416993", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416993", "resource": "Reactome", "description": "Trafficking of GluR2-containing AMPA receptors" } ], "orthologs": [ { "uniprot_canonical_ac": "B0BNE7-1", "protein_name": "Tetraspanin", "gene_name": "Tspan7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASRRMETKPVITCLKTLLIIYSFVFWITGAILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGKDERSRAVDHVQRSLSCCGVQNYTNWSSSPYFLEHGIPPSCCMNETDCNPLDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV", "length": 249 }, "evidence": [ { "id": "F1RXQ7", "url": "https://omabrowser.org/oma/group/F1RXQ7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0VEQ2-1", "protein_name": "Tetraspanin", "gene_name": "tspan7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASRRMETKPVITCLKTLLIVYSFVFWITGAILLAVGLWGKFILGPYISLIAENSTNAPYVLIGTGTTIIVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKGTFLRTYNEAVQNYNAQDERSIAVDNVQRSLRCCGVLNYTSWFSSVYFPVNGIPPSCCANISDCNASDLRNATIAPTKVYQQGCYELVTTFIETNMGIIAGVTFGIAFSQLIGMLLACCLSRFITANQYEMV", "length": 249 }, "evidence": [ { "id": "F1RXQ7", "url": "https://omabrowser.org/oma/group/F1RXQ7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q55CW7-1", "protein_name": "Probable tetraspanin tspB", "gene_name": "tspB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVDTTNLIPNTPRYLKVPLIAFNTILWVLGLVLVIIGSIGVSFFSNFKDFTKVSKASAALSNLTTGAPAGVLVIGIFFVILTVIGCFVAGKEKLVGLVIYTMLMLIILVALIGVGGKALTLHNDDVVKQIGNAWEDVSNGPKNSTILKLENFLKCCYWNSTSSRNPLLCPKDSKGIPKYTDTCDSVISSKISSNLYLVGAAAVSIGVIEFICMLFALFLIIRICRAPRTKSYDYQ", "length": 235 }, "evidence": [ { "id": "F1RXQ7", "url": "https://omabrowser.org/oma/group/F1RXQ7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q62283-1", "protein_name": "Tetraspanin-7", "gene_name": "Tspan7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLRTYTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSSSPYFLDHGIPPSCCMNETDCNPLDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFITANQYEMV", "length": 249 }, "evidence": [ { "id": "F1RXQ7", "url": "https://omabrowser.org/oma/group/F1RXQ7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1RXQ7", "url": "https://www.uniprot.org/uniprotkb/F1RXQ7" } ], "pmid": "" } ] } ] }, "pro_annotation": 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"count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXT5-1", "uniprot_ac": "F1RXT5", "uniprot_id": "F1RXT5_PIG", "mass": { "chemical_mass": 211113.0, "monoisotopic_mass": 211113.0 }, "refseq": {}, "gene_names": [ { "name": "SBF1", "type": "recommended", "evidence": [ { "id": "F1RXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ] } ], "protein_names": [ { "name": "SET binding factor 1", "type": "synonym", "evidence": [ { "id": "F1RXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXT5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SBF1", "url": "https://www.uniprot.org/uniprotkb/F1RXT5", "locus": { "chromosome": "5", "start_pos": 284509, "end_pos": 260935, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000968", "url": "https://www.ensembl.org/id/ENSSSCG00000000968" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000968", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000968", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01235", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01235", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14588", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14588", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030564", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030564", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10807", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10807", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10807:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10807:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483248", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483248", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AUI1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8L8", "url": "https://www.uniprot.org/uniprotkb/A0A287B8L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8L8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXT5-1", "url": "https://www.uniprot.org/uniprotkb/F1RXT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARLADYFVLVAFGPHPRGDGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPERNPPTFFVAVLTDINSERHYCACLTFWEPAEPSQEGVCPGDTERAEEADEGVPPSPAAAGSPGQLFAPKTLVLVSRLDHAEVFRNSLGLIYTIHVEGLNVGLENVVGSLLTCIIPLAGGSQLDSVEDGVRTISLGAGDRQVIQTPLTDSLPISRCSVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLSDACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAEAQELLDVIVADLDGGTVTVPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTMSVSSLKMQDKELRAVFLRLFAQLLQGYRWCLHMVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKVLEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVKELAEQLYKNENPYPAVAMHKVQRPGEASHLRRAPRPFPRLDEGLVQWIVDQATAKMQGAPPAVKAEKRTTVPSGPPMTAILERSSGLHGNSARRLEVVRNCISYVFEGKMLEAKKLLPAVLRALKGRAARRCLAQELHLHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLSPGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPAEDRDPSQVGEAPAQEDQRSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRMSYLLLPLDSSKSRLLRERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCTESGVTSDHLKGLHVMVPDIVQMHIETLEAVHRESKRLPPIQKPKLLRPRLLPGEECVLDGLRVYLLPDGREEGAGGSGGGPALLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQTPVDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSVELFRKQLHKLRYPPDIRGTFALTLGSAHTPGRPPRATKDKGPSFRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPAPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHLGSHVPSPRARVTTLSNPMAASASRRTAPRGKWGSVRASGRSAGLGTDVGSRLAGRDMLGPPQANGAPPDPGFLRPQRAALYIIGDKAQLKGVRPDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPATEPGPASFLRSLEDSEWLIQIHRLLQVSVLVVELLDSGSSVLVSLEDGWDITTQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVYQIHLQFPMEFEFSPFYLKFLGYHHASRRFRTFLLDSDYERIELGLLYEEKGERRAPQACRSVWEYAERLSKRAPIFYNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERPDAGAPQSRRRVVWPCYDSRPRAQPDAISRLLEELQRLETELGRPPERWKDAWDRVKAAQRLEGRPDGRGTPSSLLASSVPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTASGSRQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRVDTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDQIQSCLSDA", "length": 1897, "header": "tr|F1RXT5-1|F1RXT5_PIG Isoform 1 of SET binding factor 1 OS=Sus scrofa OX=9823 GN=SBF1 PE=1 SV=4 CANONICAL=F1RXT5-1" }, "isoforms": [ { "isoform_ac": "A0A287AUI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUI1/entry", "sequence": { "sequence": "MVLAGQEVMGAECLSWGLPEGQGLAHWRGFWLGMLPQRRDPGVREREQGVLSTLGWHVCALGVQPHSRGFSLCPLVASGAGAGLVPAEGQGPAVSPHGPWGSQPAAREVGGGWCSEWLLSSGSGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPERNPPTFFVAVLTDINSERHYCACLTFWEPAEPSQEGVCPGDTERAEEADEGVPPSPAAAGSPGQLFAPKTLVLVSRLDHAEVFRNSLGLIYTIHVEGLNVGLENVVGSLLTCIIPLAGGSQRTISLGAGDRQVIQTPLTDSLPISRCSVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLSDACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAEAQELLDVIVADLDGGTVTVPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTMSVSSLKMQDKELRAVFLRLFAQLLQGYRWCLHMVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKVLEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVKELAEQLYKNENPYPAVAMHKVQRPGEASHLRRAPRPFPRLDEGLVQWIVDQATAKMQGAPPAVKAEKRTTVPSGPPMTAILERSSGLHGNSARRLEVVRNCISYVFEGKMLEAKKLLPAVLRALKGRAARRCLAQELHLHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLSPGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPAEDRDPSQVVGEAPAQEDQRSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRMSYLLLPLDSSKSRLLRERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCTESGVTSDHLKGLHVMVPDIVQMHIETLEAVHRESKRLPPIQKPKLLRPRLLPGEECVLDGLRVYLLPDGREEGAGGSGGGPALLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQTPVDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSVELFRKQLHKLRYPPDIRGTFALTLGSAHTPGRPPRATKDKGPSFRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPAPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHLGSHVPSPRARVTTLSNPMAASASRRTAPRGKWGSVRASGRSAGLGTDVGSRLAGRDMLGPPQANGAPPDPGFLRPQRAALYIIGDKAQLKGVRPDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPATEPGPASFLRSLEDSEWLIQIHRLLQVSVLVVELLDSGSSVLVSLEDGWDITTQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVYQIHLQFPMEFEFSPFYLKFLGYHHASRRFRTFLLDSDYERIELGLLYEEKGERRAPQACRSVWEYAERLSKRAPIFYNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERPDAGAPQSRRRVVWPCYDSRPRAQPDAISRLLEELQRLETELGRPPERWKDAWDRVKAAQRLEGRPDGRGTPSSLLASSVPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTASGSRQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRVDTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDQIQSCLSDA", "length": 1993, "header": "tr|A0A287AUI1-1|A0A287AUI1_PIG Computationally mapped isoform of SET binding factor 1 OS=Sus scrofa OX=9823 GN=SBF1 PE=1 SV=2 CANONICAL=F1RXT5-1" }, "locus": { "chromosome": "5", "start_pos": 284160, "end_pos": 266515, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037842.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037842.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047770.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047770.2" } ] } }, { "isoform_ac": "A0A287B8L8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8L8/entry", "sequence": { "sequence": "MARLADYFVLVAFGPHPRGDGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPERNPPTFFVAVLTDINSERHYCACLTFWEPAEPSQEGVCPGDTERAEEADEGVPPSPAAAGSPGQLFAPKTLVLVSRLDHAEVFRNSLGLIYTIHVEGLNVGLENVVGSLLTCIIPLAGGSQRTISLGAGDRQVIQTPLTDSLPISRCSVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLSDACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAEAQELLDVIVADLDGGTVTVPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTMSVSSLKMQDKELRAVFLRLFAQLLQGYRWCLHMVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKVLEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVKELAEQLYKNENPYPAVAMHKVQRPGEASHLRRAPRPFPRLDEGLVQWIVDQATAKMQGAPPAVKAEKRTTVPSGPPMTAILERSSGLHGNSARRLEVVRNCISYVFEGKMLEAKKLLPAVLRALKGRAARRCLAQELHLHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLSPGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPAEDRDPSQVGEAPAQEDQRSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRMSYLLLPLDSSKSRLLRERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCTESGVTSDHLKGLHVMVPDIVQMHIETLEAVHRESKRLPPIQKPKLLRPRLLPGEECVLDGLRVYLLPDGREEGAGGSGGGPALLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQTPVDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSVELFRKQLHKLRYPPDIRGTFALTLGSAHTPGRPPRATKDKGPSFRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPAPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHLGSHGKWGSVRASGRSAGLGTDVGSRLAGRDMLGPPQANGAPPDPGFLRPQRAALYIIGDKAQLKGVRPDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPATEPGPASFLRSLEDSEWLIQIHRLLQVSVLVVELLDSGSSVLVSLEDGWDITTQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVYQIHLQFPMEFEFSPFYLKFLGYHHASRRFRTFLLDSDYERIELGLLYEEKGERRAPQACRSVWEYAERLSKRAPIFYNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERPDAGAPQSRRRVVWPCYDSRPRAQPDAISRLLEELQRLETELGRPPERWKDAWDRVKAAQRLEGRPDGRGTPSSLLASSVPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTASGSRQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQVSGRELGGGEEPGGGPALTGRPCSAALLRPPRGHGVQGGH", "length": 1827, "header": "tr|A0A287B8L8-1|A0A287B8L8_PIG Computationally mapped isoform of SET binding factor 1 OS=Sus scrofa OX=9823 GN=SBF1 PE=1 SV=2 CANONICAL=F1RXT5-1" }, "locus": { "chromosome": "5", "start_pos": 283884, "end_pos": 260935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060312.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060312.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052871.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052871.2" } ] } }, { "isoform_ac": "F1RXT5-1", "url": "https://www.uniprot.org/uniprotkb/F1RXT5/entry", "sequence": { "sequence": "MARLADYFVLVAFGPHPRGDGEGQGQILQRFPEKDWEDNPFPQGIELFCQPSGWQLCPERNPPTFFVAVLTDINSERHYCACLTFWEPAEPSQEGVCPGDTERAEEADEGVPPSPAAAGSPGQLFAPKTLVLVSRLDHAEVFRNSLGLIYTIHVEGLNVGLENVVGSLLTCIIPLAGGSQLDSVEDGVRTISLGAGDRQVIQTPLTDSLPISRCSVALLFRQLGITNVLSLFCAALTEHKVLFLSRSYQRLSDACRGLLALLFPLRYSFTYVPILPAQLLEVLSTPTPFIIGVNAAFQAEAQELLDVIVADLDGGTVTVPECVHIPPLPEPLQSQTHSVLSMVLDPELELADLAFPPPTMSVSSLKMQDKELRAVFLRLFAQLLQGYRWCLHMVRIHPEPVIRFHKAAFLGQRGLVEDDFLMKVLEGMAFAGFVSERGVPYRPTDLFDELVAHEVARMRADENHPQRVLRHVKELAEQLYKNENPYPAVAMHKVQRPGEASHLRRAPRPFPRLDEGLVQWIVDQATAKMQGAPPAVKAEKRTTVPSGPPMTAILERSSGLHGNSARRLEVVRNCISYVFEGKMLEAKKLLPAVLRALKGRAARRCLAQELHLHVQQNRAVLDHQQFDFVVRMMNCCLQDCTSLDEHGIAAALLPLVTAFCRKLSPGVTQFAYSCVQEHVVWSTPQFWEAMFYGDVQTHIRALYLEPAEDRDPSQVGEAPAQEDQRSALDVASEQRRLWPTLSREKQQELVQKEESTVFSQAIHYANRMSYLLLPLDSSKSRLLRERAGLGDLESASNSLVTNSMAGSVAESYDTESGFEDAETCDVAGAVVRFINRFVDKVCTESGVTSDHLKGLHVMVPDIVQMHIETLEAVHRESKRLPPIQKPKLLRPRLLPGEECVLDGLRVYLLPDGREEGAGGSGGGPALLPAEGAVFLTTYRVIFTGMPTDPLVGEQVVVRSFPVAALTKEKRISVQTPVDQLLQDGLQLRSCTFQLLKMAFDEEVGSDSVELFRKQLHKLRYPPDIRGTFALTLGSAHTPGRPPRATKDKGPSFRTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPAPEDQEDEISVSEELEPSTLTPSSALKPSDRMTMSSLVERACCRDYQRLGLGTLSSSLSRAKSEPFRISPVNRMYAICRSYPGLLIVPQSVQDNALQRVSRCYRQNRFPVVCWRSGRSKAVLLRSGGLHGKGVVGLFKAQNAPSPGQSQADSSSLEQEKYLQAVVSSMPRYADASGRNTLSGFSSAHLGSHVPSPRARVTTLSNPMAASASRRTAPRGKWGSVRASGRSAGLGTDVGSRLAGRDMLGPPQANGAPPDPGFLRPQRAALYIIGDKAQLKGVRPDPLQQWELVPIEVFEARQVKASFKKLLKACVPGCPATEPGPASFLRSLEDSEWLIQIHRLLQVSVLVVELLDSGSSVLVSLEDGWDITTQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSGFTPVFLQFLDCVYQIHLQFPMEFEFSPFYLKFLGYHHASRRFRTFLLDSDYERIELGLLYEEKGERRAPQACRSVWEYAERLSKRAPIFYNYMYAPEDAEVLRPYSNVSNLKVWDFYTEETLAEGPPYDWELAQGPPEPPEEERPDAGAPQSRRRVVWPCYDSRPRAQPDAISRLLEELQRLETELGRPPERWKDAWDRVKAAQRLEGRPDGRGTPSSLLASSVPHHRRSLGVYLQEGPVGSTLSLSLDSDQSSGSTASGSRQAARRSTSTLYSQFQTAESENRSYEGTLYKKGAFMKPWKARWFVLDKTKHQLRYYDHRVDTECKGVIDLAEVEAVAPGTPTMGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDQIQSCLSDA", "length": 1897, "header": "tr|F1RXT5-1|F1RXT5_PIG Isoform 1 of SET binding factor 1 OS=Sus scrofa OX=9823 GN=SBF1 PE=1 SV=4 CANONICAL=F1RXT5-1" }, "locus": { "chromosome": "5", "start_pos": 284160, "end_pos": 260935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001058.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001058.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001036.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001036.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1483248", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483248", "resource": "Reactome", "description": "Synthesis of PIPs at the ER membrane" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1RXT5", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1615, "end_pos": 1617, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1791, "end_pos": 1793, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" }, { "id": "PS51339", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51339" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myotubularin phosphatase", "eco_id": "ECO_0000259", "start_pos": 1124, "end_pos": 1626, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 1791, "end_pos": 1895, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RXT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXT5" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 444, "start_aa": "Tyr", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1615, "end_pos": 1617 }, { "start_pos": 1791, "end_pos": 1793 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXU8-1", "uniprot_ac": "F1RXU8", "uniprot_id": "F1RXU8_PIG", "mass": { "chemical_mass": 161468.0, "monoisotopic_mass": 161468.0 }, "refseq": { "ac": "XP_020931065", "name": "ankyrin and armadillo repeat-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931065" }, "gene_names": [ { "name": "ANKAR", "type": "recommended", "evidence": [ { "id": "F1RXU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXU8" } ] }, { "name": "ANKAR", "type": "synonym", "evidence": [ { "id": "XP_020931065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931065" } ] } ], "protein_names": [ { "name": "Ankyrin and armadillo repeat containing", "type": "synonym", "evidence": [ { "id": "F1RXU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXU8/entry#names_and_taxonomy" } ] }, { "name": "ankyrin and armadillo repeat-containing protein", "type": "synonym", "evidence": [ { "id": "XP_020931065", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931065" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXU8", "url": "https://www.uniprot.org/uniprotkb/F1RXU8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKAR", "url": "https://www.uniprot.org/uniprotkb/F1RXU8", "locus": { "chromosome": "15", "start_pos": 94336791, "end_pos": 94274741, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016042", "url": "https://www.ensembl.org/id/ENSSSCG00000016042" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016042", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016042", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624643", "url": "https://www.ncbi.nlm.nih.gov/gene/100624643", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624643", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624643", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1RXU8", "url": "https://www.orthodb.org/?gene=F1RXU8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46464", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46464", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46464:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46464:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00514", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00514", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931065", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931065", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RXU8", "url": "https://www.uniprot.org/uniprotkb/F1RXU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXU8-1", "url": "https://www.uniprot.org/uniprotkb/F1RXU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRLPKKGAPRFDQIQDEETYLENLAVQRNASAFFEKYDRSEVQELLTTALVSWLSAKEDVRSQLDIPCGIMSQMNNVGFSTAILLTPVDPTALLDYREVHQIIRELAVGIYCLNQIPSISLEANYDQSSSCQLPPAYYDTRIGQILINIDYMLKALWHGIYMPKEKRARFSELWRTIMDIDPDGKPQTNRDIFAEFSSAGLIDITKDSDFNGIYDEDMNEDPTYNPNSPEEKALFMKYAENILLKLTFSTTQVQQYENVFIFETAYWLTNAVKYNQDYLDICTYQRLQQRLYLQKKIIQKHFEKKKEIRKGIGYLKLICFLTPFLLSLKKKMKVPYLSSLLQPFSDDKVKTERELPPFIYGRDFKCQNFHYKEDQYFHVHGGIEFDISTPSIENALEDFKNNLEKIRDCAANTFAEDSGYREYYSIPVLKFNGKSYYVISFELETFYQQLYKTQWWGAINEIVNNLRLKRLPLTDAQLHEQFKKKFGFKKAMKCKSIPFGMKSAVERGLSAVFHTFSRKTSSSTINVSDEAGYAIFHYAALHNRVPIVCQLCNANFNVNQRRFIIVSQGPTPLHLAAQACSLETAICLLCFKADYTLSEKRGWMPIHFAAFYDNICIIIVLCRKDPSLLEAEATAENQCTPLLLAATSGALDTIQYLLSLGANWRKTDIKGNNIIHLSVLTFHTEVLKHIIELNIPELPVWKTLVEMLQCESYKRRMMAVMSLEVICLANDGYWKSILDAGTIPALINLLKGTKIKLQCKTVGLLSNISTHASVVHALVEAGAIPALINLLVSDEPELHSRCAVILYDIAQFENKDVIAKCNGIPALINLLNLDIESVLVNVMNCIRVLCMGNENNQRAVRDHKGIPYLITFLSSDSDVLKAVSSVTIAEVARDNKEVQDAMAMEGAIPPLVALFKGKQLSVQVKGAVAVEALASSNPAIQRAFLEKSLSKYLLKLLKAFQIDIKEQGAVALWALAGQTLKQQKYMAEQIGYNFIINMLLSPSAKMQYVGGEAVIALSKDSRIHQNQICEGNGIAPLVRLLRISKIAEGTLLSVIRAVGSICIGVAHTSNPISQQYVVDENAFPVLIQLLRNHPSPNIKVEVAFSLACIVLRNDLLQNELQGNEGFNYADVLYLLHSQDKDICLKAGYALTLFAFNNRFQQYLMLESGRITISIFEPFLESTVETEKAMAAFQIIILAKVIIDVDHITLTARGITILVDSLYSDHSTTIALTGNLIASLAHSRAGIPEAFTTLGTIQRLCYHLYSGQEEVRMACSSALGYLTYNANAFRILLKECRNKPNQFLRITNNISRDASINPMFLKEFQMQQRVGLPSLSLERNGGPSIIPVFKKGKEHRRKLKPKIQPRDSLTSIPPVTNFMGLFKTTKKTTVSHNVFSFSSAISSDIINVSRPRIVLLSQLGKHVQNANSEPAEG", "length": 1433, "header": "tr|F1RXU8-1|F1RXU8_PIG Isoform 1 of Ankyrin and armadillo repeat containing OS=Sus scrofa OX=9823 GN=ANKAR PE=4 SV=4 CANONICAL=F1RXU8-1" }, "isoforms": [ { "isoform_ac": "F1RXU8-1", "url": "https://www.uniprot.org/uniprotkb/F1RXU8/entry", "sequence": { "sequence": "MLRLPKKGAPRFDQIQDEETYLENLAVQRNASAFFEKYDRSEVQELLTTALVSWLSAKEDVRSQLDIPCGIMSQMNNVGFSTAILLTPVDPTALLDYREVHQIIRELAVGIYCLNQIPSISLEANYDQSSSCQLPPAYYDTRIGQILINIDYMLKALWHGIYMPKEKRARFSELWRTIMDIDPDGKPQTNRDIFAEFSSAGLIDITKDSDFNGIYDEDMNEDPTYNPNSPEEKALFMKYAENILLKLTFSTTQVQQYENVFIFETAYWLTNAVKYNQDYLDICTYQRLQQRLYLQKKIIQKHFEKKKEIRKGIGYLKLICFLTPFLLSLKKKMKVPYLSSLLQPFSDDKVKTERELPPFIYGRDFKCQNFHYKEDQYFHVHGGIEFDISTPSIENALEDFKNNLEKIRDCAANTFAEDSGYREYYSIPVLKFNGKSYYVISFELETFYQQLYKTQWWGAINEIVNNLRLKRLPLTDAQLHEQFKKKFGFKKAMKCKSIPFGMKSAVERGLSAVFHTFSRKTSSSTINVSDEAGYAIFHYAALHNRVPIVCQLCNANFNVNQRRFIIVSQGPTPLHLAAQACSLETAICLLCFKADYTLSEKRGWMPIHFAAFYDNICIIIVLCRKDPSLLEAEATAENQCTPLLLAATSGALDTIQYLLSLGANWRKTDIKGNNIIHLSVLTFHTEVLKHIIELNIPELPVWKTLVEMLQCESYKRRMMAVMSLEVICLANDGYWKSILDAGTIPALINLLKGTKIKLQCKTVGLLSNISTHASVVHALVEAGAIPALINLLVSDEPELHSRCAVILYDIAQFENKDVIAKCNGIPALINLLNLDIESVLVNVMNCIRVLCMGNENNQRAVRDHKGIPYLITFLSSDSDVLKAVSSVTIAEVARDNKEVQDAMAMEGAIPPLVALFKGKQLSVQVKGAVAVEALASSNPAIQRAFLEKSLSKYLLKLLKAFQIDIKEQGAVALWALAGQTLKQQKYMAEQIGYNFIINMLLSPSAKMQYVGGEAVIALSKDSRIHQNQICEGNGIAPLVRLLRISKIAEGTLLSVIRAVGSICIGVAHTSNPISQQYVVDENAFPVLIQLLRNHPSPNIKVEVAFSLACIVLRNDLLQNELQGNEGFNYADVLYLLHSQDKDICLKAGYALTLFAFNNRFQQYLMLESGRITISIFEPFLESTVETEKAMAAFQIIILAKVIIDVDHITLTARGITILVDSLYSDHSTTIALTGNLIASLAHSRAGIPEAFTTLGTIQRLCYHLYSGQEEVRMACSSALGYLTYNANAFRILLKECRNKPNQFLRITNNISRDASINPMFLKEFQMQQRVGLPSLSLERNGGPSIIPVFKKGKEHRRKLKPKIQPRDSLTSIPPVTNFMGLFKTTKKTTVSHNVFSFSSAISSDIINVSRPRIVLLSQLGKHVQNANSEPAEG", "length": 1433, "header": "tr|F1RXU8-1|F1RXU8_PIG Isoform 1 of Ankyrin and armadillo repeat containing OS=Sus scrofa OX=9823 GN=ANKAR PE=4 SV=4 CANONICAL=F1RXU8-1" }, "locus": { "chromosome": "15", "start_pos": 94336481, "end_pos": 94277096, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017467.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017467.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016997.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016997.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 572, "start_aa": "Thr", "end_pos": 572, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr572", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXU8", "url": "https://www.uniprot.org/uniprotkb/F1RXU8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624643", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624643", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1309, "end_pos": 1311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1407, "end_pos": 1409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 768, "end_pos": 770, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 572 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1309, "end_pos": 1311 }, { "start_pos": 1407, "end_pos": 1409 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 527, "end_pos": 529 }, { "start_pos": 768, "end_pos": 770 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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} ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXV0-1", "uniprot_ac": "F1RXV0", "uniprot_id": "F1RXV0_PIG", "mass": { "chemical_mass": 71630.0, "monoisotopic_mass": 71630.0 }, "refseq": { "ac": "XP_003133589", "name": "asparagine synthetase domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133589" }, "gene_names": [ { "name": "ASNSD1", "type": "recommended", "evidence": [ { "id": "F1RXV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXV0" } ] }, { "name": "ASNSD1", "type": "synonym", "evidence": [ { "id": "XP_003133589", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133589" } ] } ], "protein_names": [ { "name": "Asparagine synthetase domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1RXV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXV0/entry#names_and_taxonomy" } ] }, { "name": "asparagine synthetase domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_003133589", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133589" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXV0", "url": "https://www.uniprot.org/uniprotkb/F1RXV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASNSD1", "url": "https://www.uniprot.org/uniprotkb/F1RXV0", "locus": { "chromosome": "15", "start_pos": 94272119, "end_pos": 94266701, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016041", "url": "https://www.ensembl.org/id/ENSSSCG00000016041" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016041", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016041", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01991", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01991", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03766", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03766", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513955", "url": "https://www.ncbi.nlm.nih.gov/gene/100513955", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001962", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001962", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513955", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513955", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SVYESCP", "url": "https://omabrowser.org/oma/group/SVYESCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXV0", "url": "https://www.orthodb.org/?gene=F1RXV0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45937:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45937:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00733", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00733", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133589", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RXV0", "url": "https://www.uniprot.org/uniprotkb/F1RXV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXV0-1", "url": "https://www.uniprot.org/uniprotkb/F1RXV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCGICCAVSFSIEHFSKNLKEDLLCNLKRRGPNSSKQLLKSNADYHCLFSGHVLHLRGVLTAQPVEDERGNVFLWNGEVFGGIKVAPEENDTQIMFNYLSSCKNESDILSVFSEVQGPWSFIYYQASSHSLWFGRDFFGRRSLLWQFSNLGKSFCLSSVATQTSGVVNQWQEVPASGIFRIDLLSASISKSVVLKLYPWKYNAGNNVIKECAGSLTLISADLPTFVSVVENEAKLYLKEPVVPLNMMLPQAPFEIHCSGISSIPPRETLKVFLTDGHMNEVVQQFIDVLSAAVKRRVLCLPRDENLSPSEVLKTNNRKANVAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFIMKEKSTPTHFNKEGKKQKNHYEIPPEESSKNALAAASASPDEQFNVPDRITGRTGLRELQAANPSRVWNFVEINVSLEELQKFRRTRISHLVQPLDTVLDDSIGCAVWFASGGVGWLVTQDEAKHYQSRAKVVLTGIGADEQLGGYSRHRVRFQKHGLEGLNKEIEMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPVWEKANLTLPRGIGEKLILRLAAMELGLTTSALLPKRAMQFGSRIAKMEKNNEKASDKCGRLQVISLENLSIEEEIQL", "length": 642, "header": "tr|F1RXV0-1|F1RXV0_PIG Isoform 1 of Asparagine synthetase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ASNSD1 PE=4 SV=1 CANONICAL=F1RXV0-1" }, "isoforms": [ { "isoform_ac": "F1RXV0-1", "url": "https://www.uniprot.org/uniprotkb/F1RXV0/entry", "sequence": { "sequence": "MCGICCAVSFSIEHFSKNLKEDLLCNLKRRGPNSSKQLLKSNADYHCLFSGHVLHLRGVLTAQPVEDERGNVFLWNGEVFGGIKVAPEENDTQIMFNYLSSCKNESDILSVFSEVQGPWSFIYYQASSHSLWFGRDFFGRRSLLWQFSNLGKSFCLSSVATQTSGVVNQWQEVPASGIFRIDLLSASISKSVVLKLYPWKYNAGNNVIKECAGSLTLISADLPTFVSVVENEAKLYLKEPVVPLNMMLPQAPFEIHCSGISSIPPRETLKVFLTDGHMNEVVQQFIDVLSAAVKRRVLCLPRDENLSPSEVLKTNNRKANVAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFIMKEKSTPTHFNKEGKKQKNHYEIPPEESSKNALAAASASPDEQFNVPDRITGRTGLRELQAANPSRVWNFVEINVSLEELQKFRRTRISHLVQPLDTVLDDSIGCAVWFASGGVGWLVTQDEAKHYQSRAKVVLTGIGADEQLGGYSRHRVRFQKHGLEGLNKEIEMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPVWEKANLTLPRGIGEKLILRLAAMELGLTTSALLPKRAMQFGSRIAKMEKNNEKASDKCGRLQVISLENLSIEEEIQL", "length": 642, "header": "tr|F1RXV0-1|F1RXV0_PIG Isoform 1 of Asparagine synthetase domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ASNSD1 PE=4 SV=1 CANONICAL=F1RXV0-1" }, "locus": { "chromosome": "15", "start_pos": 94272061, "end_pos": 94266731, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017466.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017466.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016996.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016996.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXV0", "url": "https://www.uniprot.org/uniprotkb/F1RXV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513955", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513955", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LZM2-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "ASNSD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCGICCAVSFSVEHFSRDLKEDLLCNLKRRGPDSSKQLLRSTVNYQCLFSGHVLHLRGLLTAQPVEDERGNVFLWNGEVFSGIKVEAEENDTQIMFHYLSSCKNESDILSLFSEVQGPWSFIYYQASSHSLWFGRDFFGRRSLLWHFSNLGKSFCLSSVGTQASGVADQWQEVPASGIFRIDLKSASISQSVVLKLYPWKYSSGGDDIRECVHNSLTEISADLPTLVLVAANEAKLYLKDPVVPLNMALPQAAFETHCSSISRSPLTRETLRVFLTDGHTKEVVQQFIGVLSTAVKRRVLCLPRDENLAPSKVLKTSNGKANVAVLFSGGIDSMVIAALADHHIPLDEPIDLLNVAFMTKEKTIPVNFNKKGRKQANHCEMPSEEFSKRAAATAAASPGEQLSVPDRVTGRAGLKELQAANPSRIWNFVEINVSLEELQRLRRTRISHLIQPLDTVLDDSIGCAVWFASRGAGWLVTQDGAQPYQSSAKVVLTGIGADEQLAGYSRHRVRFLAHGLEGLNKEIEMELGRISSRNLGRDDRVISDHGKEARFPFLDENVVSFLNSLPVWEKANLTLPRGIGEKLILRLAAVELGLTASALLPKRALQFGSRIAKMEKNNEKASDKCGRLQIISLENLSVEN", "length": 640 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0YHN9-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "ASNSD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MCGICCVVALSSQHTICDYFSKDLHCCLRRRGPDSSQQLIKTVSEPSYECLFSGHVLHLRGLMTPQPLEDVNNNIFLWNGEIFNGVHVGDSENDTEVMFRHLALCSSEADILSLFSSLRGPWSFIYYQASGHSLWFGRDYFGRRSLLWQLSNVSDGAFCLTSVSVNSESCNQCQEVPASGIFKMDLRDCATTKSLSLTLFPWKYKCTEKNEEEIFIDVLDQVSKDLPNHITVVMNESKLCLSAPVIPLNRTISEASVEHVSSDSSETSSVVSLETLQGYLAVEHKRKVVHQFIDVLDEAVKRRVLLLRRGEDEGTGQVQGVSPRKAHVAVLFSGGVDSMVIAALADRHVPLEEPIDLLNVAFMTKEQTKRTGTTKNCIRQEMQLDLHRGEENHKDLDAKMGDDLSCFDVPDRITGRAGLKELEALNPSRTWNFVEINVTLKELKEMRRQFINHLIYPLDTVLDDSIGCAIWFASRGEGYINKQGEMKPYKSPAKVVLTGIGADEQLAGYSRHRICFRKCGPEGLNKELEMELGRISSRNLGRDDRIIGDHGKEARFPFIDEDVVSFLNSLPISEKADLTLPRGVGEKLILRLGAKELGLEAASILPKRAVQFGSRIAKLESNNEKAYHTCSRLKLF", "length": 636 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A8MRC1-1", "protein_name": "Asparagine synthase family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MCGIAIVVCGVRIELSTLSSSLSETETPFERLQVSVEDVKAVLSQRGPDSVGEKTIHLRPNCGQESATLSVVETSEGTYKLEETTSLGELHFIGSTLQLRGTSPIRQPLVDSSGNILAYNGEVFGGIELNSYDNDTEVLLKSLEKAKSLVPDVLSMIKGPWAIIYWQESSRTLWFGKDPFGRRSLLVHSPTVEDPRFLLSSVSPASSVSQGLDTENGNSLHRYWEELPCGVYSISFGVSELCIHGEVTKHEWRNTIWKELIEWERKLVVPRPEDLSTSSLSGVQEDKSVSTSLGFAQTVLVVLKESVRRRTSLHSIYQGDKEAVPVAVLFSGGLDSMILAALLHQCLDPKYEVDLLNVSFDGPNAPDRISAKAGIKELKKIAPFRRWKLVEIDADLSKLGFETKRVMSLINPADTYMDLNIGTALWLAARGDGWIHEDNGNPSVEENNQRVKYKSDARILLVGAGADEQCAGYGRHRTKYRNGSWVALDQEMKLDMQRIWKRNLGRDDRCIADNGKEGRFPFLDEDVIKTLLDIPLWEIADLEQPSGTGDKKILRQVASLLGVHEVAKMPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVRFLAPSH", "length": 610 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "D3ZWR3-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "Asnsd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCGICCSVSFSVEHFSKDLKEDLLYNLRRRGPSSSRQLLKSAVNYQCLFSGHVLHLRGVLTAQPVEDECGNVFLWNGEVFNGVQVEAEDNDTQVMFSSLSACKNESEILSLFSKVHGPWSFIYYQASSHCLWFGRDVFGRRSLLWQFSNLGKSFCLSSVGAQISGGADQWQEVPASGIFQIDLNSAAVSRCVILKLYPWKSISKENVAEECANELTQTPAELPEFVSVVINKANLYLSKPIVPLNKTLPEVPLETQCRNSSSVPGSRETLEILLRDEHTQRIVQQFIDVLSVAVKRRTLCLAREENLASKDVLKTCGKKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFLPKQKAGLPIPNVERNQQNHCEIPPEESSPSTAVPQGPHDAEVPDRVTGKAGLKELQSVNPSRTWNFVEINVSLEELQKLRRARICHLVQPSDTVLDDSIGCAVWFASRGIGWLVTEDAVQSYKSSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIADHGKEARFPFLDENVVSFLNSLPVWEKVDLALPRGVGEKLILRLAAVELGLSSSALLPKRAIQFGSRIAKLEETNEKASDKCGRLQILP", "length": 627 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IMR5-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "Asnsd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCGICCSVGFSDEHFSKELKEDLLCNLRRRGPNNSKQLLKSGVNYQCLFSGHVLHLRGVLTAQPVEDESGNVFLWNGEVFDGVQVEAEDSDTQVMFSSLSACKNESDILSLFSRVQGPWSFIYYQASSHYLWFGRDFFGRRSLLWRFNNLGNSFFLSSVGDQISGLADKWQEVPASGIFQIDLNSSAVSRHVSIKLYPWKYVSKENFIEKCSNDLPHTAAELPAFVSVVANEDKLYLSKPVVPLNKMLPQAPLETHCRNSSGVPHSRETLAMFLTDEHTKKVVHQFIDVLSVAVKRRVLCLVRKENPVSKEVLKTWNKTANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVTKRKTGPSVTKVERKRQTHHEIPSEESSWGATVAQGLDDVEVPDRVTGKAGLKELQSINPSRTWNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGVGWLVTQDAVRSYKSSAKVILTGIGADEQLAGYSRHRVRFQSLGLEGLNEEIAMELGRISSRNLSRDDRVIGDHGKEARFPFLDENVVSFLNSLPVWEKVDLSLPRGVGEKLILRLAAVELGLTASALLPKRAMQFGSRIAKLEKTDEKASDKCGRLQILP", "length": 627 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q54YK5-1", "protein_name": "Glutamine amidotransferase type-2 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MCGISVIINGIKILEPINKNGQNKDLKETITTSTSTPTPIAIGDYYTIKNDIESRLINRGPDSIKSKLIEIKCFQKDIDKEISISMELISSVLGLRGPLTIQPLTDENNGNTLLWNGELFGGYEIGIHDNDTCLLLHLLSKINENESENQEINENEIERELIEIMLKIKGPFAFLYWQEKKRKLWFGRDVLGRRSLLVNNETIINDKPSLIISSMGSFPNGIDDSIRLPKWDEINTFGLFSIHFPKIIETNIIHFKIHPWDISNINLNIGMISLDYDNDNDNEEESNTNTTTTTTTTTTKEIEEIEGNNIDQLHFYPFGRREKLDIEKGEWSEKVFNDYVNGFYEAISDSINVRLNNLPIASLEIPDLIRAPFLQEKPLPLVSRLGILFSGGLDSMVLAAMSNKHMETPDEPIHLINVAFGDDDSPFEEYDKVPDRKAAISGLKELQTIAPNRQWKLIKVNVGTKEMEWAKKIVYQLSYPAITIMDMTICLALWFAGRGEGILHGEELKGQGQQQQQRYMTTFVYPRFPYLDESLISYLNGIELPYICDLSLPQGTGDKRILREVGPIQFGSRSSKQLNKNVPARITQKCGKDVFSFTTPIYDPLQDPGYEALQKQKLKQKMSLERKEKKNKEKSEKIEKKINFKNQQEKQKQQPNDDENILRKKEVKNCN", "length": 671 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BFS9-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "Asnsd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCGICCSVSFSIEHFSKELKEDLLHNLRRRGPNSSRQLLKSAVNYQCLFSGHVLHLRGVLTIQPVEDEHGNVFLWNGEVFNGVKVEAEDNDTQVMFNSLSACKNESEILLLFSKVQGPWSFIYYQASSHHLWFGRDFFGRRSLLWQFSNLGKSFCLSSVGTQVYGVADQWQEVPASGIFQIDLNSAAVSRSVILKLYPWRYISKEDIAEECGNDLTQTPAGLPEFVSVVINEANLYLSKPVVPLNKKLPESPLEIQCRNSSSTSGTRETLEVFLTDEHTKKIVQQFIAILNVSVKRRILCLAREENLASKEVLKTCSSKANIAILFSGGVDSMVIAALADRHIPLDEPIDLLNVAFVPKQKTGLPIPNIERKQQNHHEIPSEESSQSPAADEGPGEAEVPDRVTGKAGLKELQSVNPSRTWNFVEINVSLEELQKLRRARICHLVQPLDTVLDDSIGCAVWFASRGIGWLVTQDAVRSYKSSAKVILTGIGADEQLAGYSRHRARFQSLGLEGLNEEIAMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPVWEKVDLTLPRGVGEKLILRLAAMELGLPASALLPKRAIQFGSRIAKLEKSNEKASDKCGRLQILP", "length": 627 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWL6-1", "protein_name": "Asparagine synthetase domain-containing protein 1", "gene_name": "ASNSD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCGICCSVNFSAEHFSQDLKEDLLYNLKQRGPNSSKQLLKSDVNYQCLFSAHVLHLRGVLTTQPVEDERGNVFLWNGEIFSGIKVEAEENDTQILFNYLSSCKNESEILSLFSEVQGPWSFIYYQASSHYLWFGRDFFGRRSLLWHFSNLGKSFCLSSVGTQTSGLANQWQEVPASGLFRIDLKSTVISGCIILQLYPWKYISRENIIEENVNSLSQISADLPAFVSVVANEAKLYLEKPVVPLNMMLPQAALETHCSNISNVPPTREILQVFLTDVHMKEVIQQFIDVLSVAVKKRVLCLPRDENLTANEVLKTCDRKANVAILFSGGIDSMVIATLADRHIPLDEPIDLLNVAFIAEEKTMPTTFNREGNKQKNKCEIPSEEFSKDVAAAAADSPNKHVSVPDRITGRAGLKELQAVSPSRIWNFVEINVSMEELQKLRRTRICHLIRPLDTVLDDSIGCAVWFASRGIGWLVAQEGVKSYQSNAKVVLTGIGADEQLAGYSRHRVRFQSHGLEGLNKEIMMELGRISSRNLGRDDRVIGDHGKEARFPFLDENVVSFLNSLPIWEKANLTLPRGIGEKLLLRLAAVELGLTASALLPKRAMQFGSRIAKMEKINEKASDKCGRLQIMSLENLSIEKETKL", "length": 643 }, "evidence": [ { "id": "F1RXV0", "url": "https://omabrowser.org/oma/group/F1RXV0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "L-asparagine biosynthetic process", "id": "GO:0070981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070981", "evidence": [ { "database": "UniProtKB", "id": "F1RXV0", "url": "https://www.uniprot.org/uniprotkb/F1RXV0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 633, "end_pos": 635, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RXV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXV0" }, { "id": "PS51278", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51278" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glutamine amidotransferase type-2", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 221, "start_aa": "Cys", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 305, "end_pos": 307 }, { "start_pos": 33, "end_pos": 35 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 570, "end_pos": 572 }, { "start_pos": 633, "end_pos": 635 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXW5-1", "uniprot_ac": "F1RXW5", "uniprot_id": "F1RXW5_PIG", "mass": { "chemical_mass": 33810.0, "monoisotopic_mass": 33810.0 }, "refseq": { "ac": "XP_003133358", "name": "transmembrane protein 177", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133358" }, "gene_names": [ { "name": "TMEM177", "type": "recommended", "evidence": [ { "id": "F1RXW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXW5" } ] }, { "name": "TMEM177", "type": "synonym", "evidence": [ { "id": "XP_003133358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133358" } ] } ], "protein_names": [ { "name": "Transmembrane protein 177", "type": "recommended", "evidence": [ { "id": "F1RXW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXW5/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 177", "type": "synonym", "evidence": [ { "id": "XP_003133358", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133358" } ] } ], "function": [ { "annotation": "Plays a role in the early steps of cytochrome c oxidase subunit II (MT-CO2/COX2) maturation and is required for the stabilization of COX20 and the newly synthesized MT-CO2/COX2 protein.", "evidence": [ { "database": "UniProtKB", "id": "F1RXW5", "url": "https://www.uniprot.org/uniprotkb/F1RXW5#function" }, { "database": "UniProtKB", "id": "ARBA00003998", "url": "https://www.uniprot.org/uniprotkb/ARBA00003998#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXW5", "url": "https://www.uniprot.org/uniprotkb/F1RXW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM177", "url": "https://www.uniprot.org/uniprotkb/F1RXW5", "locus": { "chromosome": "15", "start_pos": 31578224, "end_pos": 31582437, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015742", "url": "https://www.ensembl.org/id/ENSSSCG00000015742" } ] } } ], "crossref": [ { "id": "F1RXW5", "url": "https://alphafold.ebi.ac.uk/entry/F1RXW5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015742", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015742", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523095", "url": "https://www.ncbi.nlm.nih.gov/gene/100523095", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523095", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523095", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HTFGLKY", "url": "https://omabrowser.org/oma/group/HTFGLKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RXW5", "url": "https://www.orthodb.org/?gene=F1RXW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21824", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21824", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21824:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21824:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-9864848", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003133358", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133358", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RXW5", "url": "https://www.uniprot.org/uniprotkb/F1RXW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXW5-1", "url": "https://www.uniprot.org/uniprotkb/F1RXW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPLWRATAFVQRHRTGLLVGSCAGLFGAQISYHLFPDPVVQWLYQYWPQGRPAPLSPELQGLFQEVLQDIGVPSGHHFEAFTTFTFQPVSAGFPRLHAGAVVGIPASFLGGPVTKADEPVVVHGQRVDWQNPAGARLRDALTLSRDAQKFALAREVVYLESSAAALQALPAPACLAGTWALSVVAKHALGLYGGPLNLRAAFNLLAAVAGFVAYAFCTDSLTHALEAWLDWRAASLSVAYAWGGVEFYEKVLSCNLALRSLLGRPGEQLYTPSGNVVPRHWFRIKHLPYTTRRDLVLQLWRAAHSSSSS", "length": 311, "header": "tr|F1RXW5-1|F1RXW5_PIG Isoform 1 of Transmembrane protein 177 OS=Sus scrofa OX=9823 GN=TMEM177 PE=3 SV=1 CANONICAL=F1RXW5-1" }, "isoforms": [ { "isoform_ac": "F1RXW5-1", "url": "https://www.uniprot.org/uniprotkb/F1RXW5/entry", "sequence": { "sequence": "MAGPLWRATAFVQRHRTGLLVGSCAGLFGAQISYHLFPDPVVQWLYQYWPQGRPAPLSPELQGLFQEVLQDIGVPSGHHFEAFTTFTFQPVSAGFPRLHAGAVVGIPASFLGGPVTKADEPVVVHGQRVDWQNPAGARLRDALTLSRDAQKFALAREVVYLESSAAALQALPAPACLAGTWALSVVAKHALGLYGGPLNLRAAFNLLAAVAGFVAYAFCTDSLTHALEAWLDWRAASLSVAYAWGGVEFYEKVLSCNLALRSLLGRPGEQLYTPSGNVVPRHWFRIKHLPYTTRRDLVLQLWRAAHSSSSS", "length": 311, "header": "tr|F1RXW5-1|F1RXW5_PIG Isoform 1 of Transmembrane protein 177 OS=Sus scrofa OX=9823 GN=TMEM177 PE=3 SV=1 CANONICAL=F1RXW5-1" }, "locus": { "chromosome": "15", "start_pos": 31580223, "end_pos": 31579291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057476.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057476.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039779.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039779.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RXW5", "url": "https://www.uniprot.org/uniprotkb/F1RXW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523095", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523095", "resource": "KEGG Pathway" }, { "id": "R-SSC-9864848", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "resource": "Reactome", "description": "Complex IV assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z1I4-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGARFLRKASVWLKKHKITLLATSCVGLFGANLSYHVFPEQTFKLLHECWSDGRPAELSQSLCAVFQDVLQDTAVKSANYQAFAASGFHPVSAGIPWLPAGSLVGIPPNFDSTIEDKRGIVDHVVVIGGKEVDWESNEGVALKEALTFSLEAQKFALAREVVYLQNGSPLASAAVAPTCLAGTCLCGTVIKVVLGLYSGPRVLRSICNLIIAAAGLILYYISYDAMTYHLDCKADRNAATVSKDYAKGGVEFYDKILSRNRILRALMGKEGTKIYAPSGNIFPRHWFRIKYTPYTYRRDLIVNILKELQA", "length": 310 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1Z9W2-1", "protein_name": "Transmembrane protein 177", "gene_name": "CG10220", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLPKLKTGGGFFSYFKTEKGRKLVFYAAGATTVGLFLGNFLPHTFGLKYYRDFVQCYQHGVGRPVPEAVQQRLEKALDQLGVTPFERKFVKPFTVFGFDVFQAGTTKFRFGGALGIPVNYGYDSLEEIKRADIRFRDKQINWSSPSGKLLEEAIVLNEDEQIFGLSKAVLQMQTHRVLLNSIFPSVSFLMVYTMGHYLNLRLDLFARHGSVRFVLYSILGLFGLGLWSFMKDYNQVSTDAEIDQRLATMGPQLVAAGASFYDKHLKKNIALRELIGNDVYTALGNENYMIRQKSMPLTARKSFFLEKLEELKKAQQPETE", "length": 320 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "E1BDP4-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGPLWRATVFVQRHRTGLLVGSCAGLFGAQISYHLFPDPVVQWLYQYWPQGQPAPLSPELERLFQEVQQDIGIPSGHHFEAFTTFTFQPVSAGFPRLPGGAIVGIPASFLGGPVTNTDQPVVVHGQRVDWRSPAGTRLRDALTLSHDAQKFALAKEVVYLESGAAALQALPAPACLAGTWALGVGAKHALGLYGGPMSLRAAFNLVAAVAGFVAYAFSTDSLTHGLEAWLDRRTASLSAAYARGGVEFYEKVLSGNLALRSLLGQRGKKLYTPSGNVIPRHWFRIKHLPYTARRDSVLQMWRAALGPGSS", "length": 311 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4KM93-1", "protein_name": "Transmembrane protein 177", "gene_name": "Tmem177", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGPLWRAAVFIQRHRTSLLVGSCVGLFGVQISFHLFPDPIVQWLYQYWPQGQPAPLSPQLRSLFQEVLKDIGVPSGHCYKPFTAFTFQPVSAGFPQLPAGAVVGIPAIFLGGLVTNIDHTVVIHGQKVDWQSPAGTRLRDALTLSHDAQKFALAKEVVYLESGMAALQTLPAPVCLAGTWAISVGAKHALGLYGGPMSLRAAFNLVAIVVGYVAYAFSKDSLTVALEGWLDHRTASLSAAYVRGGVEFYEKILSGNLALRSLLGRQGEKLYTPSGNIVPRHWFRINHLPYTTRRDSLLQMWRAKVSPGHF", "length": 311 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGPLWRTAAFVQRHRTGLLVGSCAGLFGVPISYHLFPDPVVQWLYQYWPQGQPAPLPPQLQSLFQEVLQDIGVPSGHCYKPFTTFTFQPVSAGFPRLPAGAVVGIPASFLGDLVINTNHPVVIHGHTVDWRSPAGARLRASLTLSREAQKFALAREVVYLESSTTAVHALLAPACLAGTWALGVGAKYTLGLHAGPMNLRAAFSLVAAVAGFVAYAFSQDSLTHAVESWLDRRTASLSAAYACGGVEFYEKLLSGNLALRSLLGKDGEKLYTPSGNIVPRHLFRIKHLPYTTRRDSVLQMWRGMLNPGRS", "length": 311 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PBI8-1", "protein_name": "Transmembrane protein 177", "gene_name": "tmem177", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSRFLKISVFIQKYRTPLLLIGCGGVFSANIFYHIFPDHTYKKVYQAWHKGEPASLSEKLQNIFQEVLKDSSISTSGNFSAFAAFGFHPVGAGVPWLPSGAQIGIPANFNSSTADLEGITNRTILINGKELEWDSDSGVALKNSLVFSLEAQKFAIAREVARLGSGGPILHAAVAPVCLAGACVYSVALKQIFRFQAGSIIFRGVVNLLSLGLGVMTYVLAADSVSQWLDYRSDRRAAGLSRDYAKGGLEFYEKILTRNKTLRSLMGQKGEEMYAPSGNLFPAHLLQLRHATYTSRRDRILNLLKNENV", "length": 310 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BPE4-1", "protein_name": "Transmembrane protein 177", "gene_name": "Tmem177", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGPLWRAAAFIQRHRTSLLVGSCAGLFGVQISFHLFPDPIVQWLYQYWPQGQPAPLSPHLWSLFQEVLKDIGVPSGHCYKPFTAFTFQPVSAGFPRLPAGAVVGIPAIFLGGPVTNIEHSVIIHGQRVDWQSPAGTRLRDALTMSHNAQKFALAKEVVYLESGVAALQTLPAPACLAGTWAISVGAKHALGLYGGPMSLRTAFNLVAIVVGYVAYTFSKDSLTLALEGWLDRRTASLSAAYVQGGVEFYEKILSGNLALRSLLGRQGEKLYTPSGNIVPRHWFRINHLPYTTRRDSLQQMWRATVSPGRF", "length": 311 }, "evidence": [ { "id": "F1RXW5", "url": "https://omabrowser.org/oma/group/F1RXW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1RXW5", "url": "https://www.uniprot.org/uniprotkb/F1RXW5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1RXW5", "url": "https://www.uniprot.org/uniprotkb/F1RXW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RXW5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RXW5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RXW5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RXX8-1", "uniprot_ac": "F1RXX8", "uniprot_id": "F1RXX8_PIG", "mass": { "chemical_mass": 38682.0, "monoisotopic_mass": 38682.0 }, "refseq": {}, "gene_names": [ { "name": "MCHR2", "type": "recommended", "evidence": [ { "id": "F1RXX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXX8" } ] } ], "protein_names": [ { "name": "Melanin-concentrating hormone receptor 2", "type": "recommended", "evidence": [ { "id": "F1RXX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXX8/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 145", "type": "synonym", "evidence": [ { "id": "F1RXX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXX8/entry#names_and_taxonomy" } ] }, { "name": "MCH-2R", "type": "synonym", "evidence": [ { "id": "F1RXX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RXX8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for melanin-concentrating hormone, coupled to G proteins that activate phosphoinositide hydrolysis.", "evidence": [ { "database": "UniProtKB", "id": "F1RXX8", "url": "https://www.uniprot.org/uniprotkb/F1RXX8#function" }, { "database": "UniProtKB", "id": "ARBA00057175", "url": "https://www.uniprot.org/uniprotkb/ARBA00057175#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RXX8", "url": "https://www.uniprot.org/uniprotkb/F1RXX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MCHR2", "url": "https://www.uniprot.org/uniprotkb/F1RXX8", "locus": { "chromosome": "1", "start_pos": 66837600, "end_pos": 66877276, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004356", "url": "https://www.ensembl.org/id/ENSSSCG00000004356" } ] } } ], "crossref": [ { "id": "F1RXX8", "url": "https://alphafold.ebi.ac.uk/entry/F1RXX8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004356", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004356", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15339", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15339", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FLIHQWV", "url": "https://omabrowser.org/oma/group/FLIHQWV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24229", "url": 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"expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYD0", "url": "https://www.uniprot.org/uniprotkb/F1RYD0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RYD0", "locus": {} } ], "crossref": [ { "id": "F1RYD0", "url": "https://alphafold.ebi.ac.uk/entry/F1RYD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012531", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012531", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524295", "url": "https://www.ncbi.nlm.nih.gov/gene/100524295", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100621480", "url": "https://www.ncbi.nlm.nih.gov/gene/100621480", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524295", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524295", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:100621480", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621480", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MMRECAN", "url": "https://omabrowser.org/oma/group/MMRECAN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RYC9", "url": "https://www.orthodb.org/?gene=F1RYC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1RYD0", "url": "https://www.orthodb.org/?gene=F1RYD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF04538", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04538", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005657953", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657953", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RYC9", "url": "https://www.uniprot.org/uniprotkb/F1RYC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYC9-1", "url": "https://www.uniprot.org/uniprotkb/F1RYC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYD0", "url": "https://www.uniprot.org/uniprotkb/F1RYD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYD0-1", "url": "https://www.uniprot.org/uniprotkb/F1RYD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264, "header": "tr|F1RYD0-1|F1RYD0_PIG Isoform 1 of Transcription elongation factor A like 3 OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=F1RYD0-1" }, "isoforms": [ { "isoform_ac": "F1RYC9-1", "url": "https://www.uniprot.org/uniprotkb/F1RYC9/entry", "sequence": { "sequence": "MEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 200, "header": "tr|F1RYC9-1|F1RYD0_PIG Computationally mapped isoform of Transcription elongation factor A like 3 OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=F1RYD0-1" }, "locus": { "chromosome": "X", "start_pos": 83598030, "end_pos": 83597431, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025815.5", "url": "https://www.ensembl.org/id/ENSSSCT00000025815.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024586.1", "url": "https://www.ensembl.org/id/ENSSSCP00000024586.1" } ] } }, { "isoform_ac": "F1RYD0-1", "url": "https://www.uniprot.org/uniprotkb/F1RYD0/entry", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264, "header": "tr|F1RYD0-1|F1RYD0_PIG Isoform 1 of Transcription elongation factor A like 3 OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=F1RYD0-1" }, "locus": { "chromosome": "X", "start_pos": 84489756, "end_pos": 84487811, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013699.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013699.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013322.3", "url": "https://www.ensembl.org/id/ENSSSCP00000013322.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 14, "start_aa": "Thr", "end_pos": 14, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr14", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYC9", "url": "https://www.uniprot.org/uniprotkb/F1RYC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524295", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524295", "resource": "KEGG Pathway" }, { "id": "ssc:100621480", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621480", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBL8-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "Tceal6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEELHGENEGKLEKEGKPEDEVEPEDEEKSDEEEKPDKKAKPARQGKLEEAAKPDEQGQDEGKPEKQGKSDGEGKHQGESKPDSQAKSASEARAAEKRPAEDYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEAMRECADMTRAQEELRKRQKMGGFHWVPRDAQEALVPRGQRGVRGMRGGGGRSQRGLHDIPYL", "length": 199 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R0A5-1", "protein_name": "Transcription elongation factor A protein-like 3", "gene_name": "Tceal3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEVRGENEGKLEKEGKPEDEVEPEDEEKSDEDEKPDKKAKPAPRQGKPEEEAKPDEQGQDEGKPEKQGKSDGEGKRQGESKPDSQAKSASEARAAEKRPAEDYVPRKAKRKTDRGTDDSPKNSQEDLQDRHVSSEEMMRECADMTRAQEELRKRQKMGGFHWVPRDAQDALVPRGPRGVRGVRGGGGRSQRGLHDIPYL", "length": 200 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1RYD0", "url": "https://omabrowser.org/oma/group/F1RYD0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RYD0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 264, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RYD0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RYD0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 14 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RYG3-1", "uniprot_ac": "F1RYG3", "uniprot_id": "F1RYG3_PIG", "mass": { "chemical_mass": 60750.0, "monoisotopic_mass": 60750.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "NTF2 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1RYG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYG3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYG3", "url": "https://www.uniprot.org/uniprotkb/F1RYG3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RYG3", "locus": {} } ], "crossref": [ { "id": "F1RYG3", "url": "https://alphafold.ebi.ac.uk/entry/F1RYG3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026976", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026976", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10662", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10662", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10662:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10662:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09162", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09162", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RYG3", "url": "https://www.uniprot.org/uniprotkb/F1RYG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYG3-1", "url": "https://www.uniprot.org/uniprotkb/F1RYG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "NSLPLHTDQMNPIQRRARCWGIYQRRYNYWSEQVTSQEQKDRNSVGSDAHVDTRVRYTPYGIPPYHRRGNFQMQDLTHVNMDTDKKPPEGKVERIRQDETLGSWFKITIPFGIKYEEKWLLSLIQKHCGVPFTPVEFHYEKMQAQFFVENANIAFALRNVSGKIYNEAKERISVFVDPCDAPRSVQKELRSAKVEQMKLTLNRQNEGSQQFLHIQRLRFDPGLMTSGMGTVQNPGNAMTTCLQLYGENVPKVKSAGQMDKVQRLEPDEMCADRNPVCNTSPDEATSLSSILELFPKLLCLDGQETPPATHRGAEARQCLPTCKGSFFGSNELKSLVLQFLQHYYLIHDYGNRQRLLGAYHDEACFSLTIPFHPEDPDPSSLCEYLEENRNMKKLKDPDLQVQLLKHTKGDIVGALSVLPQTRHDFSSFVVDTWFQTEMMLCFSVNGVFKEVGGWSQGCVRAFTRTFITIPATSSSLCIVNDELFVREASPSETQSAAFFIPVPTASASSVCTLSQEQQEMVQAFSNQSQMKFE", "length": 533, "header": "tr|F1RYG3-1|F1RYG3_PIG Isoform 1 of NTF2 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1RYG3-1" }, "isoforms": [ { "isoform_ac": "F1RYG3-1", "url": "https://www.uniprot.org/uniprotkb/F1RYG3/entry", "sequence": { "sequence": "NSLPLHTDQMNPIQRRARCWGIYQRRYNYWSEQVTSQEQKDRNSVGSDAHVDTRVRYTPYGIPPYHRRGNFQMQDLTHVNMDTDKKPPEGKVERIRQDETLGSWFKITIPFGIKYEEKWLLSLIQKHCGVPFTPVEFHYEKMQAQFFVENANIAFALRNVSGKIYNEAKERISVFVDPCDAPRSVQKELRSAKVEQMKLTLNRQNEGSQQFLHIQRLRFDPGLMTSGMGTVQNPGNAMTTCLQLYGENVPKVKSAGQMDKVQRLEPDEMCADRNPVCNTSPDEATSLSSILELFPKLLCLDGQETPPATHRGAEARQCLPTCKGSFFGSNELKSLVLQFLQHYYLIHDYGNRQRLLGAYHDEACFSLTIPFHPEDPDPSSLCEYLEENRNMKKLKDPDLQVQLLKHTKGDIVGALSVLPQTRHDFSSFVVDTWFQTEMMLCFSVNGVFKEVGGWSQGCVRAFTRTFITIPATSSSLCIVNDELFVREASPSETQSAAFFIPVPTASASSVCTLSQEQQEMVQAFSNQSQMKFE", "length": 533, "header": "tr|F1RYG3-1|F1RYG3_PIG Isoform 1 of NTF2 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1RYG3-1" }, "locus": { "chromosome": "X", "start_pos": 84071882, "end_pos": 84065218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024111.5", "url": "https://www.ensembl.org/id/ENSSSCT00000024111.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025365.5", "url": "https://www.ensembl.org/id/ENSSSCP00000025365.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYG3", "url": "https://www.uniprot.org/uniprotkb/F1RYG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45972:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RYH9", "url": "https://www.uniprot.org/uniprotkb/F1RYH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYH9-1", "url": "https://www.uniprot.org/uniprotkb/F1RYH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLRSHPFPRQERPQGRAPRAALGSSTSRASEDRRAGSPPEEAVPNCEDRRGSARLFTGADAGALAEAGGHSQQSSTEASEAPVTGPPSGPKGVRTEEEHPASLPPAAAVPGALSRPPEQTRSASSSPARRGSLPVPRPRKRSMCEIAQSAEREVSRVAPGQHQGQAPGERPSPAGSGAALTEKQKEARKLMVFLQRPGAWGGVEGPRKLRSPARELASAVALPPWGLDLGSCLDVLAFAQQHGEPRLAQEIYALMSDNLLHVLGDPSLYRQLSGADRERILSLRTGRGQAVLGVLVLPSLYQVSRSGLTRDPGGAGAPGVGPGPLPPCPSLHVLHPGENTWQPLTQVPQEVPLRGCGLCTLHNYLFLAGGIRGSGAKAVCSNEVFCYNPLTNIWSQVRPMLQARAQLKLVALDGLLYAIGGECLYSMERYDPRTDAWTSRAPLPAGSFPVAHEAVACQGDIYVTGGHLFYRLLRYSPEKDVWDECPYSASHRRSSDMVALGGFLYRFDLLRGVGAAVMRYNTVTGSWSRAASLPLPDPAPLRCAVLGNTIYCLNHRVTATFTVSEGTAQFQAKELQPFPLGAKGVLCPFTLTLPAADPLQTAL", "length": 604, "header": "tr|F1RYH9-1|F1RYH9_PIG Isoform 1 of Kelch domain containing 7B OS=Sus scrofa OX=9823 GN=KLHDC7B PE=4 SV=2 CANONICAL=F1RYH9-1" }, "isoforms": [ { "isoform_ac": "F1RYH9-1", "url": "https://www.uniprot.org/uniprotkb/F1RYH9/entry", "sequence": { "sequence": 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"database": "Ensembl Peptide", "id": "ENSSSCP00000001028.2", "url": "https://www.ensembl.org/id/ENSSSCP00000001028.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYH9", "url": "https://www.uniprot.org/uniprotkb/F1RYH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517826", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517826", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1M150-1", "protein_name": "Kelch domain containing 7B", "gene_name": "Klhdc7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"length": 1218 }, "evidence": [ { "id": "F1RYH9", "url": "https://omabrowser.org/oma/group/F1RYH9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RYH9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 604, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RYH9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RYH9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], 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"crossref": [ { "id": "ENSSSCG00000016030", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016030", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16486", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16486", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16494", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16494", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155630", "url": "https://www.ncbi.nlm.nih.gov/gene/100155630", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155630", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155630", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YNPLTWK", "url": "https://omabrowser.org/oma/group/YNPLTWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RYJ1", "url": "https://www.orthodb.org/?gene=F1RYJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21540", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21540", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21540:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21540:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04434", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04434", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930955", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930955", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RYJ1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRGGYKASERRRHLSDRLSRRQDQALSSSIYLLREMGPTAFLLREEEPENKDFRVSLGNPHVCNCSVFLKGGELCKHICWVLLKKFKLPRNHESALQLGLVEGEISNLLRGIPQVQTPQQGTNDENAQIEEDGYIKQKEIGSDDICSICQEVLLEKKLPVTFCRLGCGNNVHIKCMKILANFQDMTSNNSMLKCPLCRKEFAPLKLISEEFKNSSRLVTAAEKQRLDKHLGIPCNNCQQFPIEGKCYKCTECIEYHLCQECFDSSCHLSHSFIFREKRNQRWRSLEKRSDETVKYVDIKTEIEGKMPHFQEKQGQVYTPKHVVKSLPLLLITKNSKLLAPGYQCRLCLKAFHLGQHTRLLPCAHKFHRKCIDSWLFHQCNSCPIDGQVIYNPLIWKDTAVNGHAHQSVSNTDIPHLSKQEELFIPGTGLVLKQNSLGILPSIPQCNSEKLNTTQSPTDTYQNITIDDLYSIKLDDSNSRKSTYDYKVSQHFPRYLHDLPTGSYGKMSSQTFFPSVHHKRLTCLTGMENPCISKTHHTGQSQKMSKDCKCIVHNSKKILGTEIKKDNARSSTLLPDDLNLTVNGGKTNLSLSKRYNHCIGKIRPKCSHLSRRPISYPLKTKSTELSLILEGVQL", "length": 634, "header": "tr|F1RYJ1-1|F1RYJ1_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=ZSWIM2 PE=4 SV=3 CANONICAL=F1RYJ1-1" }, "isoforms": [ { "isoform_ac": "F1RYJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1/entry", "sequence": { "sequence": "MLRGGYKASERRRHLSDRLSRRQDQALSSSIYLLREMGPTAFLLREEEPENKDFRVSLGNPHVCNCSVFLKGGELCKHICWVLLKKFKLPRNHESALQLGLVEGEISNLLRGIPQVQTPQQGTNDENAQIEEDGYIKQKEIGSDDICSICQEVLLEKKLPVTFCRLGCGNNVHIKCMKILANFQDMTSNNSMLKCPLCRKEFAPLKLISEEFKNSSRLVTAAEKQRLDKHLGIPCNNCQQFPIEGKCYKCTECIEYHLCQECFDSSCHLSHSFIFREKRNQRWRSLEKRSDETVKYVDIKTEIEGKMPHFQEKQGQVYTPKHVVKSLPLLLITKNSKLLAPGYQCRLCLKAFHLGQHTRLLPCAHKFHRKCIDSWLFHQCNSCPIDGQVIYNPLIWKDTAVNGHAHQSVSNTDIPHLSKQEELFIPGTGLVLKQNSLGILPSIPQCNSEKLNTTQSPTDTYQNITIDDLYSIKLDDSNSRKSTYDYKVSQHFPRYLHDLPTGSYGKMSSQTFFPSVHHKRLTCLTGMENPCISKTHHTGQSQKMSKDCKCIVHNSKKILGTEIKKDNARSSTLLPDDLNLTVNGGKTNLSLSKRYNHCIGKIRPKCSHLSRRPISYPLKTKSTELSLILEGVQL", "length": 634, "header": "tr|F1RYJ1-1|F1RYJ1_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=ZSWIM2 PE=4 SV=3 CANONICAL=F1RYJ1-1" }, "locus": { "chromosome": "15", "start_pos": 91864130, "end_pos": 91841948, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017455.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017455.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016985.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016985.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYJ1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155630", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BG21-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "ZSWIM2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLRGGCKASERRKHLIDRLSWQQDQALSSSIYLLREMGPTAFLLREEEPENRDFRVSLGNPHVCNCSTFLKGGELCKHICWVLLKKFRLPRNHESALQLGLVEREINGLLQGIHRVQTPQREMNNENAQTEEDGYIKQKEIGSDDICSICQEVLLEKKLPVTFCRFGCGNSVHIKCMKILANYQDVPLNSSMLKCPLCRKDFGPLNLILEEFKNSNKLVTAAEKERLDKHLGIPCNNCQQFPLEGKCYKCTKCIEYHLCQDCFDSCCHLSHSFMFREKRNQKWRSLGKRSDKTVKYVDIKDEIEEKMPHFQEKQDQIYTPKHVVKSLPLFLITKNSKLLAPGYQCRLCLKAFRRGQHTRQLPCTHKFHRKCIDSWLLYKCNSCPIDGQVIYNPLIWNDRAVNGHVHHSVSNTDVTHLPKQEESELFIPGTGLVLKQNKPGILPILPQRNSEKLNTPQSPNDTYQNITIDNLYSIKLDDSNSRKSIYECKSNQHFPSYLQDLPTGSFGKTSSQTLFPSIDHKNIIHLTERKNPCINKKHHTNQSQKMNKSCKGTNHKSKKILGNKVREDNTRSNTLLPDLSLIVSWGTTKLSLSKRYNCMGKIRPKCSHLSRRPVSHPLNTKSPELSLILEGVHL", "length": 634 }, "evidence": [ { "id": "F1RYJ1", "url": "https://omabrowser.org/oma/group/F1RYJ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q68FQ1-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "Zswim2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRGGCKASEKRRHLSESLSWQQDQALSSSIYLLRQIGPTGFLLREEEPENGDFRVLLGNPHECSCPTFLKRGELCKHICWVLLKKFKLPRNHESAFQLGLTEGEINDLLRGIHQVQTPQLRASEETARVEEDGYLKQKDISAGDICPICQEVLLEKRLPVTFCRFGCGNNVHIKCMRILANYQDTVSDTSMLKCPLCREEFAPLKVILEEFKNSNKLMTISEKERLDKHLGIPCNNCTQLPIEGKCYKCTECVEYHLCQECFDSCYHPSHAFVFREKRNQRWRSVEKRSDVVKYLDTKNEGEANMPYFKEKPGSFCLSSLSQFYTPKHVVKSLPLLLITKNSKLLAPGYQCRLCLKSFCLGQYTRLLPCTHKFHRKCIDNWLFHKCNSCPIDRQVIYNPLIWKGAAMDGQAHQLASNKDIAHLSKQQEPKLFIPGTGLVLKQNRTGILPRIPQYNSKVLTTFPNPSDNYQNITMDDLCSVKIDNSDSRKLVFGYKISKPFPTYLQDPAAGPTPSQTFLPSLPHKNVICLTGRESPHIYEKDHTGRSQKTSRGYEHINYNTRKALGTRLRQHKRSSTLSTEDLNLTINWGTTKLSLSKKPNNSTGKVRQKCGRPPRRPAYHPLQTQSAALSLIMEGIQL", "length": 639 }, "evidence": [ { "id": "F1RYJ1", "url": "https://omabrowser.org/oma/group/F1RYJ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NEG5-1", "protein_name": "E3 ubiquitin-protein ligase ZSWIM2", "gene_name": "ZSWIM2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGNPHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQPGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSLEKRADEVVKYIDTKNEIEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVSNRDIIHLSKQKEPDLFIPGTGLVLKQNRLGILPSIPQCNFDELNTPQSPKDAYENTTIDNLCSIKLDNSNSKKLTYDYKISQHFPRYLQDLPTVSFGKIPSQTLLPPIVHKNIVCPTAMESPCISGKFHTSLSRMTKGCKCNNHNLKKTPATKIREDNKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGEITRKCSHLSRQPVSHSVNTKSTELSLIIEGVQL", "length": 633 }, "evidence": [ { "id": "F1RYJ1", "url": "https://omabrowser.org/oma/group/F1RYJ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D9X6-1", "protein_name": "E3 ubiquitin-protein ligase Zswim2", "gene_name": "Zswim2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRGGCKASEKRRHLSESLSWQQDQALSSSIYLLRQIGPTGFLLKEEEPEKGDFRVLLGNPHECSCPTFLKRGELCKHICWVLLKKFKLPRNHESAFQLGLTEGEINDLLRGIHQVQAPQLRASDETAQVEEDGYLKQKDINAGDICPICQEVLLEKKLPVTFCRFGCGNNVHIKCMRILANYQDTGSDSSVLRCPLCREEFAPLKVILEEFKNSNKLITISEKERLDKHLGIPCNNCNQLPIEGRCYKCTECVEYHLCQECFDSCCHSSHAFASREKRNQRWRSVEKRSEVMKYLNTENEGEAKPGCFQEKQGQFYTPKHVVKSLPLLMITKKSKLLAPGYQCRLCLKSFSFGQYTRLLPCTHKFHRKCIDNWLLHKCNSCPIDRQVIYNPLIWKGIATDGQAHQLASSKDIACLSKQQEPKLFIPGTGLVLKGKRMGVLPSIPQYNSKVLTTLQNPSDNYQNITMDDLCSVKLDNSNSRKLVFGYKISKQFPTYLKNPTTGQTPSQTFLPSLPHKNIICLTGRESPHIYEKDHIGQSQKTSRGYEHINYNTRKSLGSRLRQHKRSSALSSEDLNLTINLGTTKLSLSKRQNNSMGKVRQKLGHPPRRPAYPPLQTQNAALSLIMQGIQL", "length": 631 }, "evidence": [ { "id": "F1RYJ1", "url": "https://omabrowser.org/oma/group/F1RYJ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1RYJ1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1RYJ1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1RYJ1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "F1RYJ1", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" }, { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RYJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 147, "end_pos": 199, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RYJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" }, { "id": "PS50966", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50966" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SWIM-type", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 87, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RYJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYJ1" }, { "id": "PS50135", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50135" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZZ-type", "eco_id": "ECO_0000259", "start_pos": 230, "end_pos": 281, "start_aa": "His", "end_aa": "Gln", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 214, "end_pos": 216 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 579, "end_pos": 581 }, { "start_pos": 588, "end_pos": 590 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { 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"url": "https://www.uniprot.org/uniprotkb/F1RYP8" } ] } ], "protein_names": [ { "name": "LysM and putative peptidoglycan-binding domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "F1RYP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYP8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYP8", "url": "https://www.uniprot.org/uniprotkb/F1RYP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LYSMD2", "url": "https://www.uniprot.org/uniprotkb/F1RYP8", "locus": { "chromosome": "1", "start_pos": 120043127, "end_pos": 120026532, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004629", "url": "https://www.ensembl.org/id/ENSSSCG00000004629" } ] } } ], 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20932:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20932:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01476", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01476", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RYP8", "url": "https://www.uniprot.org/uniprotkb/F1RYP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYP8-1", "url": "https://www.uniprot.org/uniprotkb/F1RYP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADSSPARSLRAGGPRTPRPSAPSPPPRSRSSSEAEEAELSLSLARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETVDSGFPHEEELVATGETLSPPSPQESDIQPVQPEEVTARDFLQRLDLQIKLSTQAAKKLKEESRDEDSPYATSLYHS", "length": 215, "header": "tr|F1RYP8-1|F1RYP8_PIG Isoform 1 of LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=LYSMD2 PE=4 SV=2 CANONICAL=F1RYP8-1" }, "isoforms": [ { "isoform_ac": "F1RYP8-1", "url": "https://www.uniprot.org/uniprotkb/F1RYP8/entry", "sequence": { "sequence": "MADSSPARSLRAGGPRTPRPSAPSPPPRSRSSSEAEEAELSLSLARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETVDSGFPHEEELVATGETLSPPSPQESDIQPVQPEEVTARDFLQRLDLQIKLSTQAAKKLKEESRDEDSPYATSLYHS", "length": 215, "header": "tr|F1RYP8-1|F1RYP8_PIG Isoform 1 of LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=LYSMD2 PE=4 SV=2 CANONICAL=F1RYP8-1" }, "locus": { "chromosome": "1", "start_pos": 120042608, "end_pos": 120026532, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005112.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005112.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004988.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004988.3" } ] } } ], 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RYS4-1", "uniprot_ac": "F1RYS4", "uniprot_id": "F1RYS4_PIG", "mass": { "chemical_mass": 42288.0, "monoisotopic_mass": 42288.0 }, "refseq": { "ac": "XP_003129145", "name": "cyclin-I isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129145" }, "gene_names": [ { "name": "CCNI", "type": "recommended", "evidence": [ { "id": "F1RYS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ] }, { "name": "CCNI", "type": "synonym", "evidence": [ { 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Is associated with G2/M phase arrest in response to DNA damage. May be an intermediate by which p53 mediates its role as an inhibitor of cellular proliferation.", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4#function" }, { "database": "UniProtKB", "id": "ARBA00025528", "url": "https://www.uniprot.org/uniprotkb/ARBA00025528#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCNI", "url": "https://www.uniprot.org/uniprotkb/F1RYS4", "locus": { "chromosome": "8", "start_pos": 72686106, "end_pos": 72719065, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008987", "url": "https://www.ensembl.org/id/ENSSSCG00000008987" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008987", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008987", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20526", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20526", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523679", "url": "https://www.ncbi.nlm.nih.gov/gene/100523679", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523679", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523679", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TGCKHAS", "url": "https://omabrowser.org/oma/group/TGCKHAS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RYS4", "url": "https://www.orthodb.org/?gene=F1RYS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129145", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129145", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYS4-1", "url": "https://www.uniprot.org/uniprotkb/F1RYS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFLGPLENQRLSFLLEKAISREAQMWKVNVPKMPTSQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLPLTIELLQKAQMESSQLIHCRELVAHHLSALQSALPLNSVYVYRPLKHTLVTCDKGVFRLHPSSAPGPDFAKDKSKPEVPVRGTAAFYHHLPAASGCKLTSAKRKVEEMEVDDFYDGIKRLYNEDNAAENVGSVCGADLSRQEGHASPCPPLQPVSVM", "length": 377, "header": "tr|F1RYS4-1|F1RYS4_PIG Isoform 1 of Cyclin-G1 OS=Sus scrofa OX=9823 GN=CCNI PE=3 SV=2 CANONICAL=F1RYS4-1" }, "isoforms": [ { "isoform_ac": "F1RYS4-1", "url": "https://www.uniprot.org/uniprotkb/F1RYS4/entry", "sequence": { "sequence": "MKFLGPLENQRLSFLLEKAISREAQMWKVNVPKMPTSQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLPLTIELLQKAQMESSQLIHCRELVAHHLSALQSALPLNSVYVYRPLKHTLVTCDKGVFRLHPSSAPGPDFAKDKSKPEVPVRGTAAFYHHLPAASGCKLTSAKRKVEEMEVDDFYDGIKRLYNEDNAAENVGSVCGADLSRQEGHASPCPPLQPVSVM", "length": 377, "header": "tr|F1RYS4-1|F1RYS4_PIG Isoform 1 of Cyclin-G1 OS=Sus scrofa OX=9823 GN=CCNI PE=3 SV=2 CANONICAL=F1RYS4-1" }, "locus": { "chromosome": "8", "start_pos": 72709879, "end_pos": 72687191, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044847.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044847.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058180.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058180.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523679", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523679", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A5E4-1", "protein_name": "Cyclin-I", "gene_name": "Ccni", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKFPGPLENQRLSSLLERAISREAQMWKVNVPKIPTNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLNCIAISCFFLAAKTVEEDEKIPVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPRLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLPLTIELLQKAQMDSSQLIHCRELVAYHLSALQSSLPLNSVYVYRPLKHTLVTCDKGAFKLHPSSISGPDFSKDNSKPEVPVRGPAAFHLHLPAVSGCKHTSAKRKVEEMEVDDLYDGIKRLYNEDSGSENVGSVCGTDLSRQEGHASPCPPLQPVSVM", "length": 377 }, "evidence": [ { "id": "F1RYS4", "url": "https://omabrowser.org/oma/group/F1RYS4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1P1K0-1", "protein_name": "Cyclin-I", "gene_name": "CCNI", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFSGPVESQRLSLLLEMAISREAQMWKAHVPKIQPNQDVAISPKQRDEVIQWLAKLKYQFHLYPETLALAISLLDRFLAVVKARPKYLNCIAISCFFLAAKTIEEDERIPVLKVLARDSFCGCSPAEIRRMEKIILDKLNWDLHMATPLDFLHIFHAVAVSNRPQLLSILPKLSPSQHVAALTKQLLHCMACYQLLQFKGSMLALAIVSLELEKLLPDWLALIIELLQKAQMDSAQLIHCRELVAHHLSTLQSSLLPNPVYVYSPLQHTLVTCNRGAFKCQPSSVPGPGFSKDNGRPEVPVTATAALYQRLPAPSGCKQASAKRKVEEMEVDDFYDGIKRLYNEDAAPEVVALENMGSVCGADVSRQEGNVSPCPPLQPVSVM", "length": 384 }, "evidence": [ { "id": "F1RYS4", "url": "https://omabrowser.org/oma/group/F1RYS4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q14094-1", "protein_name": "Cyclin-I", "gene_name": "CCNI", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFPGPLENQRLSFLLEKAITREAQMWKVNVRKMPSNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERIPVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHLAVLTKQLLHCMACNQLLQFRGSMLALAMVSLEMEKLIPDWLSLTIELLQKAQMDSSQLIHCRELVAHHLSTLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPVRGTAAFYHHLPAASGCKQTSTKRKVEEMEVDDFYDGIKRLYNEDNVSENVGSVCGTDLSRQEGHASPCPPLQPVSVM", "length": 377 }, "evidence": [ { "id": "F1RYS4", "url": "https://omabrowser.org/oma/group/F1RYS4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z2V9-1", "protein_name": "Cyclin-I", "gene_name": "Ccni", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKFPGPLENQRLSSLLERAISREAQMWKVNVPKIPTNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLNCIAISCFFLAAKTVEEDEKIPVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSARPQLLFSLPKLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLPLTIELLQKAQMDSSQLIHCRELVAYHLSALQSALPLNSVYVYRPLKHTLVTCDKGAFKLHPSSVSGPDFSKDNSKPEVPVRGPAAFHLHLPAASGCKQTSAKRKVEEMEVDDFYDGIKRLYNEDNGPENVGSVCGTDLSRQEGHASPCPPLQPVSVM", "length": 377 }, "evidence": [ { "id": "F1RYS4", "url": "https://omabrowser.org/oma/group/F1RYS4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "pmid": "" }, { "name": "cyclin-dependent protein kinase holoenzyme complex", "id": "GO:0000307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000307", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cyclin-dependent protein serine/threonine kinase regulator activity", "id": "GO:0016538", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016538", "evidence": [ { "database": "UniProtKB", "id": "F1RYS4", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RYS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYS4" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 136, "start_aa": "Gln", "end_aa": "Asp", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 39, "end_pos": 41 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RYS6-1", "uniprot_ac": "F1RYS6", "uniprot_id": "F1RYS6_PIG", "mass": { "chemical_mass": 86228.0, "monoisotopic_mass": 86228.0 }, "refseq": { "ac": "XP_005666837", "name": "ankyrin repeat domain-containing protein SOWAHB", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666837" }, "gene_names": [ { "name": "SOWAHB", "type": "recommended", "evidence": [ { "id": "F1RYS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYS6" } ] }, { "name": "SOWAHB", "type": "synonym", "evidence": [ { "id": "XP_005666837", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666837" } ] } ], "protein_names": [ { "name": "Sosondowah ankyrin repeat domain family member B", "type": "synonym", "evidence": [ { "id": "F1RYS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RYS6/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein SOWAHB", "type": "synonym", "evidence": [ { "id": "XP_005666837", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666837" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RYS6", "url": "https://www.uniprot.org/uniprotkb/F1RYS6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SOWAHB", "url": "https://www.uniprot.org/uniprotkb/F1RYS6", "locus": { "chromosome": "8", "start_pos": 72539307, "end_pos": 72543298, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008985", "url": "https://www.ensembl.org/id/ENSSSCG00000008985" } ] } } ], "crossref": [ { "id": "F1RYS6", "url": "https://alphafold.ebi.ac.uk/entry/F1RYS6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008985", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008985", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523320", "url": "https://www.ncbi.nlm.nih.gov/gene/100523320", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523320", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523320", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WECLQNG", "url": "https://omabrowser.org/oma/group/WECLQNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RYS6", "url": "https://www.orthodb.org/?gene=F1RYS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14491", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14491", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14491:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14491:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25877", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25877", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005666837", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666837", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RYS6", "url": "https://www.uniprot.org/uniprotkb/F1RYS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYS6-1", "url": "https://www.uniprot.org/uniprotkb/F1RYS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARELSQEALLDFLCQAGGRVTNAALLSHFKHFLRDPDAPPGQHQRRRELFKGFVNSVAAVRQDPDGTKYVVLKRRYRDLLGEEGLQRPSDPPATAAPAGGAAPRCPLPACPGESLPPQQPRRRRREKEPEEEPAGAAAAAAVPAAGCNGFPASGVREAPRGGGGRRGSSGPQERVPAAVAAAAQARARCAAAETQGRCCWECLQNGLGGLPGQPLPAALPDPATTTVTACAGEETAQAPPAQDDRRAPRPQREGAPAEPPPVPAASRSRSTTVEAAESWALSPSLLSCSPAPGDPPELVTRGPLLYSTLQQQQQRTREWVARHPQIPEARDRGPIRAWSVLPDDFPRLPPEPGFWVPESKSATPEPPLSSHSVLPAGSESWPGNSPLAVFRSIRCQLSLQDLEDFVDQESHGSEESSSGPKESPGRSDEELHLAPGAPDGRRLRNTAGDPSPKKGSPNGSSQGLGNAGDGHTSQPLPVGADGLEGHPQQPLPWPVPRLRRSLRRSSRAGRARLSSSDEECLEEDLLKRSRRPPRSRKPSKAGAVSSLRVDAALTSKLVDIKAATEQGPPHSPWALGGERPAAFVHHRSSEHKSSLVPLDAREHEWIVKLASGTWNQALTLFWQDPQLALHKDFLTGYTALHWIAKHGDLTALQDLVSGAQKAGIALDVNVKSGCGYTPLHLAAIHGHQAIIRLLVQRLSSRVNVRDSSGKKPWQYLTSNTSGEIWQLLEAPRGKPIFPTQPLVRNSSPTRKAKSREISRSVTRKSSFAALLKSQHNKWKLANQYEKFPTPREREEYSD", "length": 799, "header": "tr|F1RYS6-1|F1RYS6_PIG Isoform 1 of Sosondowah ankyrin repeat domain family member B OS=Sus scrofa OX=9823 GN=SOWAHB PE=3 SV=1 CANONICAL=F1RYS6-1" }, "isoforms": [ { "isoform_ac": "F1RYS6-1", "url": "https://www.uniprot.org/uniprotkb/F1RYS6/entry", "sequence": { "sequence": "MARELSQEALLDFLCQAGGRVTNAALLSHFKHFLRDPDAPPGQHQRRRELFKGFVNSVAAVRQDPDGTKYVVLKRRYRDLLGEEGLQRPSDPPATAAPAGGAAPRCPLPACPGESLPPQQPRRRRREKEPEEEPAGAAAAAAVPAAGCNGFPASGVREAPRGGGGRRGSSGPQERVPAAVAAAAQARARCAAAETQGRCCWECLQNGLGGLPGQPLPAALPDPATTTVTACAGEETAQAPPAQDDRRAPRPQREGAPAEPPPVPAASRSRSTTVEAAESWALSPSLLSCSPAPGDPPELVTRGPLLYSTLQQQQQRTREWVARHPQIPEARDRGPIRAWSVLPDDFPRLPPEPGFWVPESKSATPEPPLSSHSVLPAGSESWPGNSPLAVFRSIRCQLSLQDLEDFVDQESHGSEESSSGPKESPGRSDEELHLAPGAPDGRRLRNTAGDPSPKKGSPNGSSQGLGNAGDGHTSQPLPVGADGLEGHPQQPLPWPVPRLRRSLRRSSRAGRARLSSSDEECLEEDLLKRSRRPPRSRKPSKAGAVSSLRVDAALTSKLVDIKAATEQGPPHSPWALGGERPAAFVHHRSSEHKSSLVPLDAREHEWIVKLASGTWNQALTLFWQDPQLALHKDFLTGYTALHWIAKHGDLTALQDLVSGAQKAGIALDVNVKSGCGYTPLHLAAIHGHQAIIRLLVQRLSSRVNVRDSSGKKPWQYLTSNTSGEIWQLLEAPRGKPIFPTQPLVRNSSPTRKAKSREISRSVTRKSSFAALLKSQHNKWKLANQYEKFPTPREREEYSD", "length": 799, "header": "tr|F1RYS6-1|F1RYS6_PIG Isoform 1 of Sosondowah ankyrin repeat domain family member B OS=Sus scrofa OX=9823 GN=SOWAHB PE=3 SV=1 CANONICAL=F1RYS6-1" }, "locus": { "chromosome": "8", "start_pos": 72543235, "end_pos": 72540839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009842.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009842.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009589.1", "url": "https://www.ensembl.org/id/ENSSSCP00000009589.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 740, "start_aa": "Thr", "end_pos": 740, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr740", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYS6", "url": "https://www.uniprot.org/uniprotkb/F1RYS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523320", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523320", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SV78-1", "protein_name": "Sosondowah ankyrin repeat domain family member B", "gene_name": "SOWAHB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARELSQEALLDFLCQAGGRVTNAALLSHFKSFLRDPDAPPSQQQRRRELFKGYVNSVAAVRQDPDGTKYVVLKRRYRDLVGEEEGLRRPRDPPAGAAPAGGAAPGSPLPERRGEHPPQPQPGRRIRREEAPAGAAAPVADAGCNGLPAGGAREAARGGGRPRGRSGHRAPVPAAAVAAAAQDRARCAAAETQGRCCWECLQNGLGGLPDPATASASAAEKLAQDDRGAPRPQWEGVLAEPPPGPATPRSPPATVEAAAPPAVLSSPSPAGDPPAPVTPGSVHYSTLQQQQQRTREWVARHPQVPETRDHGPVRAWSVLPDDFPRLPSEQGSWVQESESAPAEPPPPSQSLVFPTVSEVWPGDSQLAVFRSIRCQLSLQDLEDFVEQESHGSEESSSGPKESPGGSEDGLRLALGAPDGRRLRNPAGAPPKEARPTRSPQGLRNVGDAHTSQPVSTGADGPAGDPQPLSWPAPKLRRSLRRNSRAGRAKLSSSDEECLQEDLLKRSRRPPRSRKPSRVGAMSSPRVDAALTLAHADIKAAAAAERNHPHSWQVPGGDRLAALVPHRSSEHKSSLVPLDAREHEWIVKLASGSWIRVLSLFWEDPQLALHKDFLTGYTALHWIAKHGALRALQDLASSAQKAGVALDVNVKSSCGYTPLHLAAIHGHQGIIKLLVQRLASRVNIRDSSGKKPWQYLTSNTSGEIWQLLEAPRGKPIFPTYSLVRSSSPTRKVKSQEVSRHVTRKTSLAALLKSQHTKWKLANQYEKCPNLREREEDSA", "length": 777 }, "evidence": [ { "id": "F1RYS6", "url": "https://omabrowser.org/oma/group/F1RYS6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0LBQ6-1", "protein_name": "Sosondowah ankyrin repeat domain family member B", "gene_name": "Sowahb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGELSQEALLDFLCQAGGRVRNAELLSHFKSFLRDPHVPSGQLQERRELFKGFVNSVAAVRQDPDGTKYVVLKRRYRDLLGEEGLQRPAPTDQQPRSHRRLDPEPQKPPAGAGTRVDVGDDELVGSSARKAAGPDPGPGDSPSQRTLGPEAAQARGRCAAVGTRGRCCWECQQNGWGQPTEQPLPEDLGDPAAACEKPERAAPARDDLGAPGWLREGAAAERSPESVTPVWAPAAVEAAGSPTSPPALPPHPAPSREPLELFTAGFPNHSTQQLQQQQQRTREWVARYPLAPEAGIQGPIRAWSVLPDNFLQLPSETAFGVSETNSALPEPALSFHSLLPGVPDESSESWPGNPPLTVFRSIRCQLSLQDLDDFVDQESHGSEESSSGPKESPGTPEEGLQTVLRTSSWGELRDPVEDQFVSPNEGSPCLIPRGLRNRGNVPSFRKAPTVAKSLGDHPQETFPAPKFRRSVRRSSRTGRTKSPSSSDEEHLDEDLLKRSRRPPRSRKPSKAGALPSPRVDVVLIQKLANANAVTGQPHSSWVPGRDGSAALIPHRPSEHRSPLVPLDAREHEWIVRLASGSWFHVQMLFWEDPQLALYRDFLTGYTALHWIAKHGDLNALQDLVSGARKAGVALDVNVRSSCGYTPLHLAAMHGHQGVIKLLVQRLASRVNIRDCSGKKPWQYLNSNVSGETWQLLGAPRGKPIFPVYSLVQSSSPARKVKSREVSRTVTRKTSLAALLKTQHNKWKLASQYEKFHTPKDREEYSD", "length": 767 }, "evidence": [ { "id": "F1RYS6", "url": "https://omabrowser.org/oma/group/F1RYS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NEL2-1", "protein_name": "Ankyrin repeat domain-containing protein SOWAHB", "gene_name": "SOWAHB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738118", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738118", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VKRMKSW", "url": "https://omabrowser.org/oma/group/VKRMKSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RYW2", "url": "https://www.orthodb.org/?gene=F1RYW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23048:SF59", "url": 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"MAEQLSKEQVAKFKEAFDRIDKNKDGTINVQELGAVMRSLGHNPSEAELKELIARVDKDGDGSISFEEFLAAMVTVMQAHGSQGGLRETFRAFDLDGDGHISVDELRQTMAKLGETLSPEELDMMIREADVDQDGRVNYEEFLRVLAQK", "length": 149, "header": "tr|F1RYW2-1|F1RYW2_PIG Isoform 1 of Calmodulin like 5 OS=Sus scrofa OX=9823 GN=CALML5 PE=4 SV=1 CANONICAL=F1RYW2-1" }, "isoforms": [ { "isoform_ac": "F1RYW2-1", "url": "https://www.uniprot.org/uniprotkb/F1RYW2/entry", "sequence": { "sequence": "MAEQLSKEQVAKFKEAFDRIDKNKDGTINVQELGAVMRSLGHNPSEAELKELIARVDKDGDGSISFEEFLAAMVTVMQAHGSQGGLRETFRAFDLDGDGHISVDELRQTMAKLGETLSPEELDMMIREADVDQDGRVNYEEFLRVLAQK", "length": 149, "header": "tr|F1RYW2-1|F1RYW2_PIG Isoform 1 of Calmodulin like 5 OS=Sus scrofa OX=9823 GN=CALML5 PE=4 SV=1 CANONICAL=F1RYW2-1" }, "locus": { "chromosome": "10", "start_pos": 65407079, "end_pos": 65406633, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012193.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012193.3" }, { "database": "Ensembl Peptide", "id": 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"https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738118", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738118", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9JM83-1", "protein_name": "Calmodulin-4", "gene_name": "Calm4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSHGFTKEEVAEFQAAFNRFDKNKDGHISVEELGDVMKQLGKNLPEKDLKALISKLDTDGDGKISFEEFLTAIEKYKKGHRAGELRAVFNVLDQNGDGYITVDELKESLSKLGESLSQEELEDMIRVADVDQDGKVKYEEFVRLHVEN", "length": 148 }, "evidence": [ { "id": "F1RYW2", "url": "https://omabrowser.org/oma/group/F1RYW2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NZT1-1", "protein_name": "Calmodulin-like protein 5", "gene_name": "CALML5", "tax_id": 9606, 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"https://www.uniprot.org/uniprotkb/F1RZ09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLHIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKVEEGAFVKEHFDELCWTLTAKKNYQVDSNGNSMLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKVLSSMSLEVGLGELEELLAQEAQAAQSSGGLSVWQFLELFNSGRCLRGVGRDTLSMAIHEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEDCKEKRGTIPLDAQCCVEVLPDREGKRCMFCVKTASRTYEMSASDTRQRQEWTAAIQMAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEEMLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKKEEAARQQQRIQELEEMQQRLQEALHLEVKARRDEEAVRLAQTRLLEEEEEKLKQLLQLKEEQERYIEQAQQEKQELQQEMELQSRSLQQAQQQLEEVRQNRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQHPLLARRDSSLKRLTRWGSRDNRTPSPSSSEQQKSLNGGEEAPIAASTPQEDKRDPAPEN", "length": 631, "header": "tr|F1RZ09-1|F1RZ09_PIG Isoform 1 of IRF4-binding protein OS=Sus scrofa OX=9823 GN=DEF6 PE=4 SV=2 CANONICAL=F1RZ09-1" }, "isoforms": [ { "isoform_ac": "F1RZ09-1", "url": 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"id": "ENSSSCT00000001713.6", "url": "https://www.ensembl.org/id/ENSSSCT00000001713.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001669.2", "url": "https://www.ensembl.org/id/ENSSSCP00000001669.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZ09", "url": "https://www.uniprot.org/uniprotkb/F1RZ09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154998", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154998", "resource": "KEGG Pathway" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A4D2-1", "protein_name": "DEF6 guanine nucleotide exchange factor", "gene_name": "DEF6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEHLLLAGSSRMVTASKFPTGGKFTCCKVLSHNLYTVLCIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKVEEGAFVKENFDELCWTLTAKKNYKPDRNGNSVVSHQDAFKLWCLFNFLSEDKYPLIMVPDEVEYLLKKICTAMNVELNSCELDDCLSQEPQGQGGLTVWQFLDMVNSGRLLRGIEQEAISMAVEEVYQEVIEDVLKQGYLWKKGQLRRNWSERWFMLKPSALSYYMSEERKEKKGSITLDKHCCVEVLPDRDGKRCMFCVKTSSRTYEMSASDTRQRQEWTLAIQTAIRLQAEGKKSLHKDLKQKRREQREQREQRKAAKEEETQRLKQLQEEKERKLQELELLKEAQRQAEILLQEEEQRRRQQHEEMQRTLEIQLQEAEQARASMQAEMVLKEEEAERQRKRIMELEEMQERLQEALQQEVKARHDEESVRYAQARLLAEEEEKLKQLMKLKEEQEEYIIKTQLEKQVLKQEMENKNKCLEEAQKQLEEVRVNRQRVDQDVMAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRTNMSGGGFAGYPPLMCRRDSSLKLKQKVEDKGSDPMRESSKENVSNGGSSSPLPSSDADTMATEASNQ", "length": 621 }, "evidence": [ { "id": "F1RZ09", "url": "https://omabrowser.org/oma/group/F1RZ09/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { 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"glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7SYB5-1", "protein_name": "Differentially expressed in FDCP 6 homolog", "gene_name": "def6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLKIPHEAAALEEHFRDDDDGPVSSQGYMPYLNKYILDKVVEGTFVKENVDELCWTLTAKKNYRPEGKSILPAKDAFRLWCLFIFLSEDRYPLVMIPDEVEYLLKKFCMAMSVELNYVELEDFISQDSVQQNGFTVWTFLEMMNSGKLTRGIAKETVSMAIEEVYREIVGDVLKEGYLWKKGQLRRNWTERWFTLRPSTLLYFTSEDRKDHKGNIQLDGNCCVEVLPDRDGKRCMFCLKTLTKTYELSASDTKQRQEWTTAIQTAIRLYVEGKTSLHKDLKLKRRDQREQREKRREAKEQELQRLRALQEERERKMAELELLKEAQRQAQAMLEQDEQRRRQQHEQLHQALEIQLKEAEEARASMQAEMALKEAEAEKQRTRIRELEAMQQRLEDALQQEIKARQDEEAFRYAQARLLAEEEEKMKALMGLREEQEEYIQRAQREKQELRQEMESKSRALEEAQRQLEETRANRYRVDQDVVAAQRKLRQASTNVKHWNVQMNRLMHPIGPGEKRSSGGSFSSFRIPSQKDPALRQKQKSEEQDEESKENMESRGGCEADRRLSTNGQMEIP", "length": 612 }, "evidence": [ { "id": "F1RZ09", "url": "https://omabrowser.org/oma/group/F1RZ09/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C2K1-1", "protein_name": "Differentially expressed in FDCP 6", "gene_name": "Def6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLNIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKVEEGAFVKEHFDELCWTLTAKKNYRADGIGSSPLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKLLGSLSLEMGLGELEELLAQDAQSAQTAVGLSVWQFLELFNSGRCLRGVGRDSLSMAIQEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSSLCYFGSEECKEKRGTIPLDAHCCVEVLPDREGKRCMFCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHKELQQALEGQLREAEQARASMQAEMELKKEEAARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEEKLKQLMHLKEEQERYIERAQQEKQELQQEMALQSRSLQHAQQQLEEVRQNRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPTTSSSFTGFQPPPLARRDSSLKRLTRWGSQGNRTLSVNSSEQKSLNGGDETPILALASQEEKLDPAPGN", "length": 630 }, "evidence": [ { "id": "F1RZ09", "url": "https://omabrowser.org/oma/group/F1RZ09/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H4E7-1", "protein_name": "Differentially expressed in FDCP 6 homolog", "gene_name": "DEF6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLHIPHDPVALEEHFRDDDDGPVSSQGYMPYLNKYILDKVEEGAFVKEHFDELCWTLTAKKNYRADSNGNSMLSNQDAFRLWCLFNFLSEDKYPLIMVPDEVEYLLKKVLSSMSLEVSLGELEELLAQEAQVAQTTGGLSVWQFLELFNSGRCLRGVGRDTLSMAIHEVYQELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSCLCYFGSEECKEKRGIIPLDAHCCVEVLPDRDGKRCMFCVKTANRTYEMSASDTRQRQEWTAAIQMAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRLQQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHRELQQALEGQLREAEQARASMQAEMELKEEEAARQRQRIKELEEMQQRLQEALQLEVKARRDEESVRIAQTRLLEEEEEKLKQLMQLKEEQERYIERAQQEKEELQQEMAQQSRSLQQAQQQLEEVRQNRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKRPVTSSSFSGFQPPLLAHRDSSLKRLTRWGSQGNRTPSPNSNEQQKSLNGGDEAPAPASTPQEDKLDPAPEN", "length": 631 }, "evidence": [ { "id": "F1RZ09", "url": "https://omabrowser.org/oma/group/F1RZ09/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1RZ09", "url": "https://www.uniprot.org/uniprotkb/F1RZ09" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RZ09", "url": "https://www.uniprot.org/uniprotkb/F1RZ09" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RZ09", "url": "https://www.uniprot.org/uniprotkb/F1RZ09" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "vesicle-mediated transport to the plasma membrane", "id": "GO:0098876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098876", "evidence": [ { "database": "UniProtKB", "id": "F1RZ09", "url": "https://www.uniprot.org/uniprotkb/F1RZ09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RZ09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZ09" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 216, "end_pos": 312, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 593, "end_pos": 595 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZ35-1", "uniprot_ac": "F1RZ35", "uniprot_id": "F1RZ35_PIG", "mass": { "chemical_mass": 40781.0, "monoisotopic_mass": 40781.0 }, "refseq": { "ac": "XP_003135564", "name": "factor VIII intron 22 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135564" }, "gene_names": [ { "name": "LOC100516587", "type": "synonym", "evidence": [ { "id": "XP_003135564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135564" } ] } ], "protein_names": [ { "name": "40-kDa huntingtin-associated protein", "type": "recommended", "evidence": [ { "id": "F1RZ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZ35/entry#names_and_taxonomy" } ] }, { "name": "Factor VIII intron 22 protein", "type": "synonym", "evidence": [ { "id": "F1RZ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZ35/entry#names_and_taxonomy" } ] }, { "name": "factor VIII intron 22 protein", "type": "synonym", "evidence": [ { "id": "XP_003135564", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135564" } ] } ], "function": [ { "annotation": "RAB5A effector molecule that is involved in vesicular trafficking of early endosomes. Mediates the recruitment of HTT by RAB5A onto early endosomes. The HTT-F8A1/F8A2/F8A3-RAB5A complex stimulates early endosomal interaction with actin filaments and inhibits interaction with microtubules, leading to the reduction of endosome motility.", "evidence": [ { "database": "UniProtKB", "id": "F1RZ35", "url": "https://www.uniprot.org/uniprotkb/F1RZ35#function" }, { "database": "UniProtKB", "id": "ARBA00060010", "url": "https://www.uniprot.org/uniprotkb/ARBA00060010#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RZ35", "url": "https://www.uniprot.org/uniprotkb/F1RZ35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1RZ35", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000031635", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000031635", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516587", "url": "https://www.ncbi.nlm.nih.gov/gene/100516587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100517628", "url": "https://www.ncbi.nlm.nih.gov/gene/100517628", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516587", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:100517628", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517628", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ELWQYAG", "url": "https://omabrowser.org/oma/group/ELWQYAG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZ35", "url": "https://www.orthodb.org/?gene=F1RZ35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16797", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16797", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16797:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16797:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003135564", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135564", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RZ35", "url": "https://www.uniprot.org/uniprotkb/F1RZ35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZ35-1", "url": "https://www.uniprot.org/uniprotkb/F1RZ35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASAAGLGGGAGPGPESGDFLARYRQVSSKLKKRFLRKPNVAEAGEQFGQLGRELRAQECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQERDARQRLACPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLLLPQLPLAALQALGDAASCQLLARDYSGALAVFTRMQRLAWEHGSHPVQVPPPPPPPPPAALSQPQHQPRPPGLQPGSRAAAALPLALPPASAGSAAAPSPAALGAFSDVLVRCEVSRVLLLLLLQPPPAKLLPEHAHTLEKYSWEAFDSHGQESSGQLPEELFLLLQSLVMATHEKDTEAVKSLQVEMWPLLSAEQNHLLHLVLQETIWPSGQGI", "length": 386, "header": "tr|F1RZ35-1|F1RZ35_PIG Isoform 1 of 40-kDa huntingtin-associated protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=F1RZ35-1" }, "isoforms": [ { "isoform_ac": "F1RZ35-1", "url": "https://www.uniprot.org/uniprotkb/F1RZ35/entry", "sequence": { "sequence": "MAASAAGLGGGAGPGPESGDFLARYRQVSSKLKKRFLRKPNVAEAGEQFGQLGRELRAQECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQERDARQRLACPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLLLPQLPLAALQALGDAASCQLLARDYSGALAVFTRMQRLAWEHGSHPVQVPPPPPPPPPAALSQPQHQPRPPGLQPGSRAAAALPLALPPASAGSAAAPSPAALGAFSDVLVRCEVSRVLLLLLLQPPPAKLLPEHAHTLEKYSWEAFDSHGQESSGQLPEELFLLLQSLVMATHEKDTEAVKSLQVEMWPLLSAEQNHLLHLVLQETIWPSGQGI", "length": 386, "header": "tr|F1RZ35-1|F1RZ35_PIG Isoform 1 of 40-kDa huntingtin-associated protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=F1RZ35-1" }, "locus": { "chromosome": "X", "start_pos": 125536459, "end_pos": 125535302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014002.2", "url": "https://www.ensembl.org/id/ENSSSCT00000014002.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013618.1", "url": "https://www.ensembl.org/id/ENSSSCP00000013618.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZ35", "url": "https://www.uniprot.org/uniprotkb/F1RZ35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516587", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516587", "resource": "KEGG Pathway" }, { "id": "ssc:100517628", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517628", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z3P7-1", "protein_name": "Coagulation factor VIII associated 3", "gene_name": "F8A3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLAAAGGSGPGGAGGSGPGPGPGGGDGDFLSRYRLVSAKLRRRFLRKPNVAEAAEQFAALARELRAQESLPYAAWCQLAVARCAQSLFHGPAEAAALGEAARLFLRQERDLRQRLALRGGFGEHLAAAQSCGAFAARLHLERGQPALAAGLCLELAAALRDTGRPARAAAHFQRAAELLAAAKLPLEALRCLTERASCLLLGRDYAGALAALTRAQALAGAGAGIGGSGGAAPGGAFLDALVSCEVSRVLLLLLLQPPPGKLSPEHARTLEQYCWEAPEGGAAGGGLPAAASYLPAELFLLLQSAVLACQEKDAAALRALQAELWPLLSAEQNHLLHLVLQDMLSPAGHGL", "length": 351 }, "evidence": [ { "id": "F1RZ35", "url": "https://omabrowser.org/oma/group/F1RZ35/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2BIC9-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "f8a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAEGDFLMRYRAVSNKLKKRFLRKPNVAEASEQFGQLAKELKQQDCPQYAAFCNLAMARCEQTLFNAPGEALALTDAARLFLASEQETRALRAPGFDENMQAAMNCYSFAIKVYIEMNQPVMAASLSLELGNALKEMNRPGEAIIHFQRAAELQIQMPIEALLSLWEMASCKILTRDYDGALAVLSEMQHMCQERGLQLPGTNTPVGAFMDIIAKCEISRVLLLMLLEPPPQKLLPEHAQTLERYAWESFDSHSQVNFLPENVFLLLQSVVMACQEKDTESLKALQTELWPLLSAEQNHLLHLVVQERITPFGQGI", "length": 317 }, "evidence": [ { "id": "F1RZ35", "url": "https://omabrowser.org/oma/group/F1RZ35/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "M0RDU0-1", "protein_name": "40-kDa huntingtin-associated protein", "gene_name": "F8a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAGSASSLGGGSWPGSEAGDFLARYRQVSNKLKKRFLRKPNVAEAGEQFAQLARELRAQECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQECDARQRLGCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLELAAALRAVGQPAAAAGHFQRAAQLHLPLMPLAALQALGDAASCQLLARDYTGALAVFTRMQRLAREHGGHPVQQPELPQQLPSVPQPSLPGPQPRPVLGSTLPLPLPPDHAPGSVAQSPGTLGAFADVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDGHGQDSSGQLPEELFLLLQSLVMAAHEKDTEGIKKLQVEMWPLLTAEQNHLLHLVLQETISPSGQGV", "length": 381 }, "evidence": [ { "id": "F1RZ35", "url": "https://omabrowser.org/oma/group/F1RZ35/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23610-1", "protein_name": "40-kDa huntingtin-associated protein", "gene_name": "F8A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAAGLGGGGAGPGPEAGDFLARYRLVSNKLKKRFLRKPNVAEAGEQFGQLGRELRAQECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQERDARQRLVCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLELAAALRDLGQPAAAAGHFQRAAQLQLPQLPLAALQALGEAASCQLLARDYTGALAVFTRMQRLAREHGSHPVQSLPPPPPPAPQPGPGATPALPAALLPPNSGSAAPSPAALGAFSDVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDSHGQESSGQLPEELFLLLQSLVMATHEKDTEAIKSLQVEMWPLLTAEQNHLLHLVLQETISPSGQGV", "length": 371 }, "evidence": [ { "id": "F1RZ35", "url": "https://omabrowser.org/oma/group/F1RZ35/", "database": "OMA" }, { "id": "F1RZ35", "url": "https://omabrowser.org/oma/group/F1RZ35/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q00558-1", "protein_name": "40-kDa huntingtin-associated protein", "gene_name": "F8a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGSASSLGGGAWPGSEAGDFLARYRQVSNKLKKRFLRKPNVAEAGEQFAQLARELRAQECLPYAAWCQLAVARCQQALFHGPGEALALTEAARLFLRQECDARQRLGCPAAYGEPLQAAASALGAAVRLHLELGQPAAAAALCLELAAALRAVGQPAAAAGHFQRAAQLHLPLMPLAALQALGDAASCQLLARDYTGALALFTRMQRLAREHGGHPVQQLELLPQPPSGPQPPLSGPQPRPVLGSTLPLPQPPDHAPGSVAPSPGTLGAFADVLVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDGHGQDTSGQLPEELFLLLQSLVMAAQEKDTEGIKKLQVEMWPLLTAEQNHLLHLVLQETISPSGQGV", "length": 381 }, "evidence": [ { "id": "F1RZ35", "url": "https://omabrowser.org/oma/group/F1RZ35/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "F1RZ35", "url": "https://www.uniprot.org/uniprotkb/F1RZ35" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZJ0-1", "uniprot_ac": "F1RZJ0", "uniprot_id": "F1RZJ0_PIG", "mass": { "chemical_mass": 69893.0, "monoisotopic_mass": 69893.0 }, "refseq": {}, "gene_names": [ { "name": "RAB11FIP1", "type": "recommended", "evidence": [ { "id": "F1RZJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0" } ] } ], "protein_names": [ { "name": "Rab11 family-interacting protein 1", "type": "recommended", "evidence": [ { "id": "F1RZJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0/entry#names_and_taxonomy" } ] }, { "name": "Rab-coupling protein", "type": "synonym", "evidence": [ { "id": "F1RZJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "A Rab11 effector protein involved in the endosomal recycling process. Also involved in controlling membrane trafficking along the phagocytic pathway and in phagocytosis. 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"categories": [] }, { "id": "ENSSSCG00000015823", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015823", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08682", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08682", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019018", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019018", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037789", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037789", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15746", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15746", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15746:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15746:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09457", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09457", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AW49", "url": "https://www.uniprot.org/uniprotkb/A0A287AW49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AW49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZJ0", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLAASAGKGRGPVWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEATFELPPLLSAEAVPAAATTLQLTVLHRALLGLDKFLGRAEVDLRELHRDQGRRKTQWYTLKSKPGKKDKERGEIEVDIQFMRNNMTASMFDLSMKDKTRNPFGKLKDKIKGKNKDSVSDTASAIVPSVTPSADSDDESPSKDKKKKSKIKTLFSKSNLQRTPLSQSMSVLPTSKADKVLLRPGDFQSRWEDEDEDESSSASDVSSHKRTASGDPKQLNPINFTLPKKDGLSFLGGLRSKNDVLSRSNVCINGNHVYVEQPEAKSETKDSSPSSSPSPQGLRKKHLFSSTENLATQPWKEPGEGVPLSESSTKASLKSMSLPSYRPVVSGDLRENTSLATLEAAKETKENKKQENKKSSLLSLVTGKKDTAKGSEGESPPAAPGKEREGLASGVKAREDQPGPVDNLVKESEKEPAVISGRGRSWNPFEDVHILEPEADPEPKAAPAPPVASPRAPQTRAVKPRLQPVKPMNTTATKVVNSSLGTATIISENSINEAMMKKYKPSDPAFAYAQLTHDELIQLVLKQKETISTKELQVRQLEDYIDNLLVRVMEETPNILRVPSQVGRKAGKM", "length": 641, "header": "tr|F1RZJ0-1|F1RZJ0_PIG Isoform 1 of Rab11 family-interacting protein 1 OS=Sus scrofa OX=9823 GN=RAB11FIP1 PE=4 SV=4 CANONICAL=F1RZJ0-1" }, "isoforms": [ { "isoform_ac": "A0A287AW49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW49/entry", "sequence": { "sequence": "MVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEATFELPPLLSAEAVPAAATTLQLTVLHRALLGLDKFLGRAEVDLRELHRDQGRRKTQWYTLKSKPGKKDKERGEIEVDIQFMRNNMTASMFDLSMKDKTRNPFGKLKDKIKGKNKDSVSDTASAIVPSVTPSADSDDESPSKDKKKKSKIKTLFSKSNLQRTPLSQSMSVLPTSKADKVLLRPGDFQSRWEDEDEDESSSASDVSSHKRTASGDPKQLNPINFTLPKKDGLSFLGGLRSKNDVLSRSNVCINGNHVYVEQPEAKSETKDSSPSSSPSPQGLRKKHLFSSTENLATQPWKEPGEGVPLSESSTKASLKSMSLPSYRPVVSGDLRENTSLATLEAAKETKENKKQENKKSSLLSLVTGKKDTAKGSEGESPPAAPGKEREGLASGVKAREDQPGPVDNLVKESEKEPAVISGRGRSWNPFEDVHILEPEADPEPKAAPAPPVASPRAPQTRAVKPRLQPVKPMNTTATKVVNSSLGTATIISENSINEAMMKKYKPSDPAFAYAQLTHDELIQLVLKQKETISTKELQVRQLEDYIDNLLVRVMEETPNILRVPSQVGRKAGKM", "length": 621, "header": "tr|A0A287AW49-1|A0A287AW49_PIG Computationally mapped isoform of Rab11 family-interacting protein 1 OS=Sus scrofa OX=9823 GN=RAB11FIP1 PE=4 SV=2 CANONICAL=F1RZJ0-1" }, "locus": { "chromosome": "15", "start_pos": 48558174, "end_pos": 48527463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042318.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042318.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048352.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048352.2" } ] } }, { "isoform_ac": "F1RZJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0/entry", "sequence": { "sequence": "MSLAASAGKGRGPVWSPTHVQVTVLQARGLRAKGPGGTSDAYAVIQVGKEKYATSVSERSLGAPVWREEATFELPPLLSAEAVPAAATTLQLTVLHRALLGLDKFLGRAEVDLRELHRDQGRRKTQWYTLKSKPGKKDKERGEIEVDIQFMRNNMTASMFDLSMKDKTRNPFGKLKDKIKGKNKDSVSDTASAIVPSVTPSADSDDESPSKDKKKKSKIKTLFSKSNLQRTPLSQSMSVLPTSKADKVLLRPGDFQSRWEDEDEDESSSASDVSSHKRTASGDPKQLNPINFTLPKKDGLSFLGGLRSKNDVLSRSNVCINGNHVYVEQPEAKSETKDSSPSSSPSPQGLRKKHLFSSTENLATQPWKEPGEGVPLSESSTKASLKSMSLPSYRPVVSGDLRENTSLATLEAAKETKENKKQENKKSSLLSLVTGKKDTAKGSEGESPPAAPGKEREGLASGVKAREDQPGPVDNLVKESEKEPAVISGRGRSWNPFEDVHILEPEADPEPKAAPAPPVASPRAPQTRAVKPRLQPVKPMNTTATKVVNSSLGTATIISENSINEAMMKKYKPSDPAFAYAQLTHDELIQLVLKQKETISTKELQVRQLEDYIDNLLVRVMEETPNILRVPSQVGRKAGKM", "length": 641, "header": "tr|F1RZJ0-1|F1RZJ0_PIG Isoform 1 of Rab11 family-interacting protein 1 OS=Sus scrofa OX=9823 GN=RAB11FIP1 PE=4 SV=4 CANONICAL=F1RZJ0-1" }, "locus": { "chromosome": "15", "start_pos": 48558174, "end_pos": 48527463, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017231.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017231.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016769.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016769.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZJ0", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1RZJ0", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0" } ], "pmid": "" }, { "name": "regulated exocytosis", "id": "GO:0045055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045055", "evidence": [ { "database": "UniProtKB", "id": "F1RZJ0", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0" } ], "pmid": "" }, { "name": "regulation of hormone levels", "id": "GO:0010817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010817", "evidence": [ { "database": "UniProtKB", "id": "F1RZJ0", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "F1RZJ0", "url": "https://www.uniprot.org/uniprotkb/F1RZJ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, 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"evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004423", "url": "https://www.ensembl.org/id/ENSSSCG00000004423" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004423", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004423", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154975", "url": "https://www.ncbi.nlm.nih.gov/gene/100154975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004057", "database": 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"url": "https://www.uniprot.org/uniprotkb/F1RZM6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKAIYDEAISSFFRNVDTRVADGGSISRGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYQEKILEKLRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSVYPSGEDDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKLNLMVNSGKLGTAIKPKSLVTSSAGAFKKRQEKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPKHSLYLACALMVRGNVQISDLRRNIERLKPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFIELKARFRRLYKKKAHLHHYLQIEGMEESCFTEAMSSLSTLIEEYNQLDATKCMPTEDVPRLSVAI", "length": 474, "header": "tr|F1RZM6-1|F1RZM6_PIG Isoform 1 of Tubulin epsilon chain OS=Sus scrofa OX=9823 GN=TUBE1 PE=3 SV=3 CANONICAL=F1RZM6-1" }, "isoforms": [ { "isoform_ac": "F1RZM6-1", "url": "https://www.uniprot.org/uniprotkb/F1RZM6/entry", "sequence": { "sequence": 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"glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154975", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154975", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LPY5-1", "protein_name": "Tubulin epsilon 1", "gene_name": "TUBE1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTRQRGLAVRRPSRYGNGETQVHLRGLLTENLNLNLERSGATAATCGSGVTYGRPAPLESARWWARNTEAGAGSGPVGWPCRSMTQSVVVQVGQCGNQIGCCFWDLALREHAAVNKKGIYDEAISSFFRNVDTRVVGDGGTISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYQEKILEKLRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGEDDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGAAIKPKSLVTSSTGVFKNRQEKPFDAMNNIVANLLLNLTSSSRFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSRDHQLIRADPRHSLYLACALMVRGNVQISDLRRNIERLKPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFIELRERFLRLYKKKAHLHHYLQIEGMEESCFTEAVSSLSALIQEYNQLDATKSMPVEDLPRLNVAM", "length": 559 }, "evidence": [ { "id": "F1RZM6", "url": "https://omabrowser.org/oma/group/F1RZM6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZRL5-1", "protein_name": "Tubulin, epsilon 1", "gene_name": "Tube1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDCGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGSLYREQILEKLRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSEDDVITSPYNSMLAMKELSEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNTGPVKKRHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKGHQLLQADPRHGLYLACALIVRGEVQISDLRRNIERLKPALQFVSWNQEGWKTSLCSVPPVGHPHSLLALANNTCVKPTFLELRERFMRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDLDATKSMPVPDVPRLSVAS", "length": 475 }, "evidence": [ { "id": "F1RZM6", "url": "https://omabrowser.org/oma/group/F1RZM6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HJH0-1", "protein_name": "Tubulin epsilon chain", "gene_name": "Tube1", "tax_id": 10029, "organism": "Cricetulus 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"MTQSVVVQVGQCGNQVGCRFWDLALREHAHVNQMGVYDDALSSFFRNVDQRRGYGAEATGGKITGLKARAVLVDMEEGVLGGILQGPLRSLFSSAQLISDVSGSGNNWAVGHHTYGLAYREQIVDQVRKAAEHCDCLQCFFLIHSMGGGTGSGLGTFVLKLLEEEFPEVYRIVTSVYPTAEDDVITSPYNSVLAMKELTEHADCVLPVDNQSLVDIVGKIKHMSNTGKPGCAIKKDSTIISGQGGVVKVEKPFDAMNNIVANLLLNITSSARFEGSLNMDLNEIAMNLVPFPRLHYLVSSLTPLYTLADVSVPPRRLDQMFSDAFSKEHQLIRADPKHNLYLACALMLRGNVQLSDLRRNIERLRPTLPFVPWNQEGWKTSLCSVLPVGHSHSLLALANNTCVKSTFSELRERFMKLYRRKAHLHHYLAVDGMEQSGFTEALSSISTLIEDYTHLECPLMPNAPRLTMAT", "length": 470 }, "evidence": [ { "id": "F1RZM6", "url": "https://omabrowser.org/oma/group/F1RZM6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9D6T1-1", "protein_name": "Tubulin epsilon chain", "gene_name": "Tube1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSEDDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKHHKKPFDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDLDATKSLPVPDVPRLSVAL", "length": 475 }, "evidence": [ { "id": "F1RZM6", "url": "https://omabrowser.org/oma/group/F1RZM6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UJT0-1", "protein_name": "Tubulin epsilon chain", "gene_name": "TUBE1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGEDDVITSPYNSILAMKELNEHADCVLPIDNQSLFDIISKIDLMVNSGKLGTTVKPKSLVTSSSGALKKQHKKPFDAMNNIVANLLLNLTSSARFEGSLNMDLNEISMNLVPFPQLHYLVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQLDATKNMPVQDLPRLSIAM", "length": 475 }, "evidence": [ { "id": "F1RZM6", "url": "https://omabrowser.org/oma/group/F1RZM6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" }, { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1RZM6", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RZM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" }, { "id": "SM00865", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00865" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubulin/FtsZ 2-layer sandwich", "eco_id": "ECO_0000259", "start_pos": 278, "end_pos": 413, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1RZM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZM6" }, { "id": "SM00864", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00864" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubulin/FtsZ GTPase", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 276, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 400, "end_pos": 402 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZN1-1", "uniprot_ac": "F1RZN1", "uniprot_id": "F1RZN1_PIG", "mass": { "chemical_mass": 55697.0, "monoisotopic_mass": 55697.0 }, "refseq": { "ac": "XP_013839511", "name": "protein FAM149A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839511" }, "gene_names": [ { "name": "FAM149A", "type": "recommended", "evidence": [ { "id": "F1RZN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZN1" } ] }, { "name": "FAM149A", "type": "synonym", "evidence": [ { "id": "XP_013839511", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839511" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 149 member A", "type": "synonym", "evidence": [ { "id": "F1RZN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZN1/entry#names_and_taxonomy" } ] }, { "name": "protein FAM149A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013839511", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839511" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RZN1", "url": "https://www.uniprot.org/uniprotkb/F1RZN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM149A", "url": "https://www.uniprot.org/uniprotkb/F1RZN1", "locus": {} } ], "crossref": [ { "id": "F1RZN1", "url": "https://alphafold.ebi.ac.uk/entry/F1RZN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015802", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015802", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157674", "url": "https://www.ncbi.nlm.nih.gov/gene/100157674", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157674", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157674", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VPATRNK", "url": "https://omabrowser.org/oma/group/VPATRNK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZN1", "url": "https://www.orthodb.org/?gene=F1RZN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31997", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31997", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31997:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31997:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013839511", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839511", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RZN1", "url": "https://www.uniprot.org/uniprotkb/F1RZN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZN1-1", "url": "https://www.uniprot.org/uniprotkb/F1RZN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFEGKVSPQTQNLLAECSEWARRSLHLRVLGRQLILPTDEGVQHFQGSGPASAVQRPFSDACTHKSNVRELCISGSQIVLASLPAPAPPGPEGTGVADLPACPSLEEEVYGMDGKIEEYFAFDRKEDDEDCLEKRSAHHHSTWRKHGLPPVSPHDCIRDAVAAEVFDHVWTDVVKILETLIRKHWEITLAEGQKPKEKLKAAGNKSPPVFLSHVNTDVSSVPPSRNSQTRSVSLASHLNPLQIHRFSNNFYSDLNGVMTIQAKPLQQRPTYFADRTQNEQEDKALGVGASAFSSAQHRLARISDARGLQMPAKKTLAHRRLPSLTSDAQRIKIPSVYSDEVLRGTKLQTGMDRTASPPVQTSRSRLPPIGSETGEQNMPLPGSHPVAFRGRHPQNRVLSAIPDSVERSPLRERSLTVEQLSRPSTTHTFQSDTPRKSSLTLMEFAGHMWTGQSFLTGSHYPPKSFQRTTLSLRKDSRWPLDVASPEGQTCWNIQSLSTPSSP", "length": 503, "header": "tr|F1RZN1-1|F1RZN1_PIG Isoform 1 of Family with sequence similarity 149 member A OS=Sus scrofa OX=9823 GN=FAM149A PE=3 SV=3 CANONICAL=F1RZN1-1" }, "isoforms": [ { "isoform_ac": "F1RZN1-1", "url": "https://www.uniprot.org/uniprotkb/F1RZN1/entry", "sequence": { "sequence": "MLFEGKVSPQTQNLLAECSEWARRSLHLRVLGRQLILPTDEGVQHFQGSGPASAVQRPFSDACTHKSNVRELCISGSQIVLASLPAPAPPGPEGTGVADLPACPSLEEEVYGMDGKIEEYFAFDRKEDDEDCLEKRSAHHHSTWRKHGLPPVSPHDCIRDAVAAEVFDHVWTDVVKILETLIRKHWEITLAEGQKPKEKLKAAGNKSPPVFLSHVNTDVSSVPPSRNSQTRSVSLASHLNPLQIHRFSNNFYSDLNGVMTIQAKPLQQRPTYFADRTQNEQEDKALGVGASAFSSAQHRLARISDARGLQMPAKKTLAHRRLPSLTSDAQRIKIPSVYSDEVLRGTKLQTGMDRTASPPVQTSRSRLPPIGSETGEQNMPLPGSHPVAFRGRHPQNRVLSAIPDSVERSPLRERSLTVEQLSRPSTTHTFQSDTPRKSSLTLMEFAGHMWTGQSFLTGSHYPPKSFQRTTLSLRKDSRWPLDVASPEGQTCWNIQSLSTPSSP", "length": 503, "header": "tr|F1RZN1-1|F1RZN1_PIG Isoform 1 of Family with sequence similarity 149 member A OS=Sus scrofa OX=9823 GN=FAM149A PE=3 SV=3 CANONICAL=F1RZN1-1" }, "locus": { "chromosome": "15", "start_pos": 47037738, "end_pos": 47020465, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017209.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017209.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016748.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016748.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZN1", "url": "https://www.uniprot.org/uniprotkb/F1RZN1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157674", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157674", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LX80-1", "protein_name": "Family with sequence similarity 149, member A", "gene_name": "Fam149a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EEGCEVLHSSLPFFQESKCYFGEARLEGSGLGKINILEKTVGLSQGGHQKLWSLGSEICDLQKQWPAFPEVGAGEGRKGRGVLATILPTPVAAESGGRRDGRVGGPRCGIQPPLDLRDWSGKPCPEPRDPPRPWAPPARLAASLRARGSWTHRGRSASGARGSGLGRRVAEVPGIRGHAAAFASRGNGAGSHRTVLPRPGGSRPGLWDKSQSLGLIVIGRGLSEGIRKHNSEKNKYPLPTNFTRNVQKAIDKFSSESPSSFSSSGSRTPTEAHNSWPDSSTQSSTTGLSTERSSVSSWRDDEFDKVNAQKVQQLFWEVEELLFEGKVSAQTQNLLTECNEWARRSLHLRVLGRQLIPPTDEGFQHFQGILPSSASQKPHVPNHISSTRELCISGSQIVPEVLSASALTDPDGTEQDLTSCSSLKEEVYHMDGNIEEYFAFDRKQDGDEHLEQNPTLRGKKWRQHGLPPISPVDCIRDAVAAEVFDHVWSNVVEILEDLVRKTWESALTDGKKHKEKLKVAESRSPHVLMSRLNTDVCSVPPSRSSETLQPSLAPHFNPPQFPQPHRFSSNFYRDLSGVMTIQAKPLQQRPTYFADRTQNEQDDKLPGGGVGASSRLRLGRVLDTRGPQTSAKKTPVHRRLPSIASDPQRLKTPTVYSDEILRGTKLQTGIDHLPSPAAAQTSRNRLPPIGSEAGEQNTAASGSRPVSYRGRHPQNRVLSAMPDSMEKSPLRERTIVLEQPSRPSTTHTFLSDTPRKGSLTPVDFAAHTWTGQGILTGSQYLPKSYQRVTLTARKRFQVAS", "length": 800 }, "evidence": [ { "id": "F1RZN1", "url": "https://omabrowser.org/oma/group/F1RZN1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A5PLN7-1", "protein_name": "Protein FAM149A", "gene_name": "FAM149A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKAAVLDLGSLLAKLFETSTAPPAGPSSRPSGGAAAAGSGGSRAGTPLGTAPTLLRALAPDSPSASRRSPAPLLSSPYSRGSAASRAAGAVGTLLSWPSSPRAGKAPPQPPTPSGGGCSPARLVVPARPPSGPGGVWAALPRNPLQPGPGERELGACVAPGAGPRTLFLTLPDIGEEGASDGDSGDGEARGLSEGRRRHGFTVRSKDSLPTHFTRNVQKAIDKYTCKSLSSFSSSGSHTPTGAHTSWSGSATQSSTTGSSTERGSVYSWRDDEFDEASSQSVQRLLWEVEEMLFEGKVNPQTQSLLAECGEWTRRSLHLRVLGRQLILPTDKGVQHFQGSTPASAVHRPPLSACGHSSNIRELCISGSQIVPAALSASALPGPDDTGVADLTARSSLEEEVYHVDGKIEEYFAFDRKEDDDECLEQKPAQPGRKWRKLGLPPVSPRDCVKDAVAAEVFDHVWTNMVELLEELIRKHWETTLTEGKKQRETLKVAGNRFPHVLVPHAHADGASGPPSGHAEAHGISLASRLNPPQIHHFSSSFYSDMNGVMTIQAKPLQRRPAYFADRTQNEKEDKASGGGAGALSSAPHRLGRASDTHGLSPSAKKTPVPWRLPSLASDSQRLKTPNIYSDEVLRGTKLPTGVDHMASPLVQTSRSRFPPLVTETRGQNTAVPGCRLVSYRGRHLQNRVLSAMPDGTERSRLRERTATLERLSRPSTTHTFRQSDTPRKSSLTQMEFAAHTWTGQSILTGSQYVPKSFQRTTLTFKRRFQVTS", "length": 773 }, "evidence": [ { "id": "F1RZN1", "url": "https://omabrowser.org/oma/group/F1RZN1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CFV2-1", "protein_name": "Protein FAM149A", "gene_name": "Fam149a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CNPEADG", "url": "https://omabrowser.org/oma/group/CNPEADG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1RZN8", "url": "https://www.uniprot.org/uniprotkb/F1RZN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZN8-1", "url": "https://www.uniprot.org/uniprotkb/F1RZN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DSGRFCPAGLSFRRSDFLGALAKVDILKQLLETGASVNAPPDPCEQSPVHLAAGGGLSCFLLWQLQTGADLNQQDVFGEAPLHKAAKVGSMECLSLLVASDAQIDLCNKNGQTAEDLAWSCGFPECAKFLTTIKCMQTIKSSEQSNIGHCVPALRQKRNFESEENTNGKRKC", "length": 172, "header": "tr|F1RZN8-1|F1RZN8_PIG Isoform 1 of Ankyrin repeat domain-containing protein 37 OS=Sus scrofa OX=9823 GN=ANKRD37 PE=4 SV=2 CANONICAL=F1RZN8-1" }, "isoforms": [ { "isoform_ac": "F1RZN8-1", "url": "https://www.uniprot.org/uniprotkb/F1RZN8/entry", "sequence": { "sequence": "DSGRFCPAGLSFRRSDFLGALAKVDILKQLLETGASVNAPPDPCEQSPVHLAAGGGLSCFLLWQLQTGADLNQQDVFGEAPLHKAAKVGSMECLSLLVASDAQIDLCNKNGQTAEDLAWSCGFPECAKFLTTIKCMQTIKSSEQSNIGHCVPALRQKRNFESEENTNGKRKC", "length": 172, "header": "tr|F1RZN8-1|F1RZN8_PIG Isoform 1 of Ankyrin repeat domain-containing protein 37 OS=Sus scrofa OX=9823 GN=ANKRD37 PE=4 SV=2 CANONICAL=F1RZN8-1" }, "locus": { "chromosome": "15", "start_pos": 46448386, "end_pos": 46446067, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017202.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017202.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016741.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016741.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZN8", "url": "https://www.uniprot.org/uniprotkb/F1RZN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3I3L6-1", "protein_name": "Ankyrin repeat domain-containing protein 37", "gene_name": "Ankrd37", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLLLNCNLEEGGLKNLLETGASVNAPPDPLEQSPVHLAAGCGLACFLLWQLQTGADLNQQDVLGETPLHKAAKVGSLECLSLLVASDAQIGLCNKNGQTAEDLAWSCGFPECARYLTTIKCMQTTESSGDLCAPVLRQKRSLTSVENRALKRKC", "length": 154 }, "evidence": [ { "id": "F1RZN8", "url": "https://omabrowser.org/oma/group/F1RZN8/", "database": "OMA" } ], 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZV8-1", "uniprot_ac": "F1RZV8", "uniprot_id": "F1RZV8_PIG", "mass": { "chemical_mass": 69966.0, "monoisotopic_mass": 69966.0 }, "refseq": { "ac": "XP_001929666", "name": "kelch-like protein 31", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929666" }, "gene_names": [ { "name": "KLHL31", "type": "recommended", "evidence": [ { "id": "F1RZV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZV8" } ] }, { "name": "KLHL31", "type": "synonym", "evidence": [ { "id": "XP_001929666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929666" } ] } ], "protein_names": [ { "name": "Kelch-like protein 31", "type": "recommended", "evidence": [ { "id": "F1RZV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZV8/entry#names_and_taxonomy" } ] }, { "name": "Kelch repeat and BTB domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1RZV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZV8/entry#names_and_taxonomy" } ] }, { "name": "Kelch-like protein KLHL", "type": "synonym", "evidence": [ { "id": "F1RZV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZV8/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 31", "type": "synonym", "evidence": [ { "id": "XP_001929666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929666" } ] } ], "function": [ { "annotation": "Transcriptional repressor in MAPK/JNK signaling pathway to regulate cellular functions. Overexpression inhibits the transcriptional activities of both the TPA-response element (TRE) and serum response element (SRE).", "evidence": [ { "database": "UniProtKB", "id": "F1RZV8", "url": "https://www.uniprot.org/uniprotkb/F1RZV8#function" }, { "database": "UniProtKB", "id": "ARBA00054209", "url": "https://www.uniprot.org/uniprotkb/ARBA00054209#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RZV8", "url": "https://www.uniprot.org/uniprotkb/F1RZV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL31", "url": "https://www.uniprot.org/uniprotkb/F1RZV8", "locus": { "chromosome": "7", "start_pos": 27106111, "end_pos": 27062044, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001487", "url": "https://www.ensembl.org/id/ENSSSCG00000001487" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001487", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001487", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18260", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18260", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18470", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18470", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152767", "url": "https://www.ncbi.nlm.nih.gov/gene/100152767", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152767", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152767", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FNSWIHL", "url": "https://omabrowser.org/oma/group/FNSWIHL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZV8", "url": "https://www.orthodb.org/?gene=F1RZV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RZV8", "url": "https://www.uniprot.org/uniprotkb/F1RZV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZV8-1", "url": "https://www.uniprot.org/uniprotkb/F1RZV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPKKKTVKKNKGDVNEMTIIVEDSPLHKLNALNGLLEGGNGLSCISSELTDASYGPNLLEGLSKMRQENFLCDLVIGTKTKSFDVHKSVMASCSEYFYNILKKDPSTQRVDLNDISPLGLATVIAYAYTGKLTLSLYTIGSILSAAVYLQIHTLVKMCSDFLIQEMSVENCMYIANIAETYSLRNAKAAAQKFIRDNFLEFAESDQFMKLTFEQINELLIDDDLQLPSEIVAFQIAMKWLESDQKRVKYAADLLSNIRFGTISAQDLVNYVQSVPRMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGCRVLVTVGGRPGLTEKSLSRDVLYRDPEYGWSKLTEMPAKSFNQCVAVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLASMNQKRTHFSLSVFNGLLYAVGGRNAEGSLASLECYVPSANQWQPKAPLEVARCCHASAVADGRVLVTGGYIGGAYSRSVCAYDPARDAWQELPALSTPRGWHCAVALGERVYVMGGSQVGPRGERVDVLTVEGFSPATGQWSYAAPLPVGVSTAGASALHGRAYLVGGWNEGERKYKKCIQCFNPELNEWTEDDELPEATVGVSCCTLAMPNHVTRESRASSVSSVPVSI", "length": 634, "header": "tr|F1RZV8-1|F1RZV8_PIG Isoform 1 of Kelch-like protein 31 OS=Sus scrofa OX=9823 GN=KLHL31 PE=1 SV=1 CANONICAL=F1RZV8-1" }, "isoforms": [ { "isoform_ac": "F1RZV8-1", "url": "https://www.uniprot.org/uniprotkb/F1RZV8/entry", "sequence": { "sequence": "MAPKKKTVKKNKGDVNEMTIIVEDSPLHKLNALNGLLEGGNGLSCISSELTDASYGPNLLEGLSKMRQENFLCDLVIGTKTKSFDVHKSVMASCSEYFYNILKKDPSTQRVDLNDISPLGLATVIAYAYTGKLTLSLYTIGSILSAAVYLQIHTLVKMCSDFLIQEMSVENCMYIANIAETYSLRNAKAAAQKFIRDNFLEFAESDQFMKLTFEQINELLIDDDLQLPSEIVAFQIAMKWLESDQKRVKYAADLLSNIRFGTISAQDLVNYVQSVPRMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGCRVLVTVGGRPGLTEKSLSRDVLYRDPEYGWSKLTEMPAKSFNQCVAVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLASMNQKRTHFSLSVFNGLLYAVGGRNAEGSLASLECYVPSANQWQPKAPLEVARCCHASAVADGRVLVTGGYIGGAYSRSVCAYDPARDAWQELPALSTPRGWHCAVALGERVYVMGGSQVGPRGERVDVLTVEGFSPATGQWSYAAPLPVGVSTAGASALHGRAYLVGGWNEGERKYKKCIQCFNPELNEWTEDDELPEATVGVSCCTLAMPNHVTRESRASSVSSVPVSI", "length": 634, "header": "tr|F1RZV8-1|F1RZV8_PIG Isoform 1 of Kelch-like protein 31 OS=Sus scrofa OX=9823 GN=KLHL31 PE=1 SV=1 CANONICAL=F1RZV8-1" }, "locus": { "chromosome": "7", "start_pos": 27102099, "end_pos": 27098491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001659.3", "url": "https://www.ensembl.org/id/ENSSSCT00000001659.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000001617.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 320, "start_aa": "Thr", "end_pos": 320, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr320", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZV8", "url": "https://www.uniprot.org/uniprotkb/F1RZV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152767", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152767", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X821-1", "protein_name": "Kelch like family member 31", "gene_name": "KLHL31", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPKKKNVKKNKAADISEMTIIVEDGPLSKLNGLNGLLDGGNGFSCVSSEVSDPSYSPNLLEGLSRMRLENFLCDLTISTKTKSFNVHKVVMASISDYFHNILKKDPSTQRVDLNDVSPLGLATVITYAYTGKLTLSLYTIGSIISTAIYLQIHTLVKMCCDFLTQEISVENCMYIANIAETYGLKTTKEAAHKFIRDNFIEFSETDQFLKLTFDQINELLADDDLQLPSEIVAFQIAIKWLEFDQKRVKFAADLLGNIRFGTISAQDLVNYVQTVPRMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGFRVLVTVGGRPALTEKSLSRDILYRDPENGWKKLSEMPAKSFNQCVTVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLANMNQKRTHFSLNVFNGLLFAVGGRNLEGCLSSMECYVPATNQWQMKAPLEVPRCCHASAVVDGRILVTGGYINNAYSRSVCMYDPSNDSWQDKSSLSTPRGWHCAVSLLERVYVMGGSQLGGRGERVDVLPVECYSPYTGQWSYVAPLQTGVSTAGASMLDGKIYLVGGWNEIEKKYKKCIQCYNPDLNEWTEEDELPEATVGVSCCTISMPNTKTRESRASSVSSVPVSI", "length": 635 }, "evidence": [ { "id": "F1RZV8", "url": "https://omabrowser.org/oma/group/F1RZV8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZLT6-1", "protein_name": "Kelch-like protein 31", "gene_name": "Klhl31", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPKKKTLKKNKPEINEMTIIVEDSPLNKLNALNGLLGGENSLSCVSSELTDTSYGPNLLEGLSKMRQESFLCDLVIGTKTKSFDVHKSVMASCSEYFYNILKNDPSTKRVDLNDIAPLGLATVIAYAYTGKLTLSLYTIGSIISAAVYLQIHTLVKMCSDFLIREISVENCMYVVNMAETYCLKNAKATAQKFIRDNFIEFADSEQFMKLTFEQINELLIDDDLQLPSELVAFQIAMKWIEFDQKRVKHAADLLSNIRFGTISAQDLVNYVQTVPRMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGCRVLITVGGRPGLTEKSLSRDVLYRDPENGWSKLTEMPAKSFNQCVAVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLGSMNQKRTHFSLSVFNGLLYAVGGRNAEGSLASLECYVPSTNQWQPKAPLEVARCCHASAVADGRVIVTGGYIGSAYSRSVCAYDPALDAWQELPGLSTPRGWHCSVALGDRVYVMGGSQLGPRGERVDVLTVESFSPVARQWSFVAPLPVGVSTAGVSALHGRAYLVGGWNEGEKKYKKCIQCFNPELNEWMEDDELPEATVGVSCCTLAMPNSVSRESRASSVSSVPVSI", "length": 634 }, "evidence": [ { "id": "F1RZV8", "url": "https://omabrowser.org/oma/group/F1RZV8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3N1Y0-1", "protein_name": "Kelch-like protein 31", "gene_name": "KLHL31", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPKKKTVRKNKADVNEMTIIVEDSPLNKLNALNGLLEGGNGLSCISSELTDASYGPNLLEGLSKMRQEGFLCDLVISTKTKSFDVHKSVMASCSEYFYNILKKDPSTQRVDLNDIAPLGLATVIAYAYTGKLTLSLYTIGSIISAAVYLQIHTLVKMCSDFLIQEMSVENCMYIANIAETYSLRNAKAAAQKFIRDNFLEFAETDHFMKLTFEQINELLIDDDLQLPSEIVAFQIAMKWLEFDQKRVKYAADLLSNIRFGTISAQDLVNYVQSVPRMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGCRVLVTVGGRPGLTEKSLSRDVLYRDPEIGWSKLTEMPAKSFNQCVAVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLANMTQRRTHFSLSVFNGLLYAVGGRNAEGSLASLECYVPSANQWLPKAPLEVARCCHASAVAEGRVLVTGGYIGGAYSRSVCAYDPARDAWQERPALGTPRGWHCAVALGERVFVMGGSQLGPRGERVDVLTVESFCPASGQWSYAAPLPVGVSTAGASVLHGRAYLLGGWNEGERKYKKCIQCFNPELNEWTEDDELPEATVGVSCCALAMPNPVTRESRASSVSSVPVSI", "length": 634 }, "evidence": [ { "id": "F1RZV8", "url": "https://omabrowser.org/oma/group/F1RZV8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6Q7X9-1", "protein_name": "Kelch-like protein 31", "gene_name": "klhl31", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAPKKNKAAKKSKADINEMTIMVEDSPSNKINGLNTLLEGGNGFSCISTEVTDPVYAPNLLEGLGHMRQDSFLCDLTVATKSKSFDVHKVVMASCSEYIQNMLRKDPSLKKIELSDLSPVGLATVITYAYSGKLTLSLYTIGSTISAALLLQIHTLVKMCSDFLMRETSVENCMYVVNIADTYNLKETKEAAQKFMRENFIEFSEMEQFLKLTYEQINEFLTDDSLQLPSELTAFQIAVKWLDFDEKRLKYAPDLLSNIRFGTITPQDLVSHVQNVPRMMQDAECHRLLVDAMNYHLLPFQQNILQSRRTKVRGGLRVLLTVGGRPALTEKSLSKDILYRDEDNVWNKLTEMPAKSFNQCVAVLDGFLYVAGGEDQNDARNQAKHAVSNFSRYDPRFNTWIHLANMIQKRTHFSLNTFNGLLFAVGGRNSDGCQASVECYVPSSNQWQMKAPMEVPRCCHASSVIDGKILVSGGYINNAYSRAVCSYDPSTDSWQDKNSLSSPRGWHCSVTVGDRAYVLGGSQLGGRGERVDVLPVECYNPHSGQWSYVAPLLTGVSTAGAATLNNKIYLLGGWNEIEKKYKKCIQVYNPDLNEWTEDDELPEATVGISCCVVTIPTRKTRESRASSVSSAPVSI", "length": 635 }, "evidence": [ { "id": "F1RZV8", "url": "https://omabrowser.org/oma/group/F1RZV8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BWA5-1", "protein_name": "Kelch-like protein 31", "gene_name": "Klhl31", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPKKKTIKKNKAEINEMTIIVEDSPLSKLNALNGLLEGSNSLSCVSSELTDTSYGPNLLEGLSKMRQESFLCDLVIGTKTKSFDVHKSVMASCSEYFYNILKNDPSTKRVDLNDIAPLGLATVIAYAYTGKLTLSLYTIGSIISAAVYLQIHTLVKMCSDFLIREISVENCMYVVNIAETYSLKNAKATAQKFIRDNFIEFAESEQFMKLTFEQINELLVDDDLQLPSELVAFQIAMKWLEFDQKRVKHAADLLSNIRFGTISAQDLVNYVQTVPRMMQDADCHKLLVDAMNYHLLPYHQNTLQSRRTRIRGGCRVLITVGGRPGLTEKSLSRDILYRDPENGWSKLTEMPAKSFNQCVAVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLGSMNQKRTHFSLSVFNGLLYAVGGRNSEGSLASLECYVPSTNQWQPKAPLEVARCCHASAVADGRVIVTGGYIGSAYSRSVCAYDPALDAWQELPQLSTPRGWHCAVALGDRLYVMGGSQLGPRGERVDVLTVESFSPAARQWSFVAPLPVGVSTAGVSALHGRAYLLGGWNEGDKKYKKCIQCFNPELNEWTEDDELPEATVGVSCCTLAMPNSVSRESRASSVSSVPVSI", "length": 634 }, "evidence": [ { "id": "F1RZV8", "url": "https://omabrowser.org/oma/group/F1RZV8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H511-1", "protein_name": "Kelch-like protein 31", "gene_name": "KLHL31", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPKKKIVKKNKGDINEMTIIVEDSPLNKLNALNGLLEGGNGLSCISSELTDASYGPNLLEGLSKMRQENFLCDLVIGTKTKSFDVHKSVMASCSEYFYNILKKDPSIQRVDLNDISPLGLATVIAYAYTGKLTLSLYTIGSIISAAVYLQIHTLVKMCSDFLIREMSVENCMYVVNIAETYSLKNAKAAAQKFIRDNFLEFAESDQFMKLTFEQINELLIDDDLQLPSEIVAFQIAMKWLEFDQKRVKYAADLLSNIRFGTISAQDLVNYVQSVPRMMQDADCHRLLVDAMNYHLLPYHQNTLQSRRTRIRGGCRVLVTVGGRPGLTEKSLSRDILYRDPENGWSKLTEMPAKSFNQCVAVMDGFLYVAGGEDQNDARNQAKHAVSNFCRYDPRFNTWIHLASMNQKRTHFSLSVFNGLVYAAGGRNAEGSLASLECYVPSTNQWQPKTPLEVARCCHASAVADGRVLVTGGYIANAYSRSVCAYDPASDSWQELPNLSTPRGWHCAVTLSDRVYVMGGSQLGPRGERVDVLTVECYSPATGQWSYAAPLQVGVSTAGVSALHGRAYLVGGWNEGEKKYKKCIQCFSPELNEWTEDDELPEATVGVSCCTLSMPNNVTRESRASSVSSVPVSI", "length": 634 }, "evidence": [ { "id": "F1RZV8", "url": "https://omabrowser.org/oma/group/F1RZV8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": 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"Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521177", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521177", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RKPIESW", "url": "https://omabrowser.org/oma/group/RKPIESW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZX9", "url": "https://www.orthodb.org/?gene=F1RZX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19288:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19288:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122339", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122339", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RZX9", "url": "https://www.uniprot.org/uniprotkb/F1RZX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZX9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRATSVMIRFVTNTTKESKQDLLERLKKLEFDISEDEIFTSLTAARNLVEQKQVRPMLLVDDRALPDFKGIETGDPNAVVIGLAPEHFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDSKATVVGKPEKTFFLEALRGAGCEPEEAVMIGDDCRDDVGGAQNVGMLGILVKTGKYRAADEAKINPPPYLTCESFPHAVDHILQHLL", "length": 259, "header": "tr|F1RZX9-1|F1RZX9_PIG Isoform 1 of Haloacid dehalogenase-like hydrolase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=HDHD2 PE=1 SV=1 CANONICAL=F1RZX9-1" }, "isoforms": [ { "isoform_ac": "F1RZX9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZX9/entry", "sequence": { "sequence": "MAARRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRATSVMIRFVTNTTKESKQDLLERLKKLEFDISEDEIFTSLTAARNLVEQKQVRPMLLVDDRALPDFKGIETGDPNAVVIGLAPEHFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDSKATVVGKPEKTFFLEALRGAGCEPEEAVMIGDDCRDDVGGAQNVGMLGILVKTGKYRAADEAKINPPPYLTCESFPHAVDHILQHLL", "length": 259, "header": "tr|F1RZX9-1|F1RZX9_PIG Isoform 1 of Haloacid dehalogenase-like hydrolase domain-containing protein 2 OS=Sus scrofa OX=9823 GN=HDHD2 PE=1 SV=1 CANONICAL=F1RZX9-1" }, "locus": { "chromosome": "1", "start_pos": 96711935, "end_pos": 96683903, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042174.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042174.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043140.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043140.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZX9", "url": "https://www.uniprot.org/uniprotkb/F1RZX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521177", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521177", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P85007-1", "protein_name": "Immediate early response 3-interacting protein 1", "gene_name": "Ier3ip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFTLYSLMQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLLNLIRSVRTVMRVPLIIVNSITIVLLLLFG", "length": 82 }, "evidence": [ { "id": "F1RZX9", "url": "https://omabrowser.org/oma/group/F1RZX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UGR5-1", "protein_name": "Haloacid dehalogenase-like hydrolase domain-containing protein 2", "gene_name": "Hdhd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKESKKDLLERLKKLEFEISEDEIFTSLTAARNLIEQKQVRPMLLVDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLLNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKAMVVGKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTGKYKAADEEKINPPPYLTCESFPHAVDHILQHLL", "length": 259 }, "evidence": [ { "id": "F1RZX9", "url": "https://omabrowser.org/oma/group/F1RZX9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCH9-1", "protein_name": "Haloacid dehalogenase-like hydrolase domain-containing protein 2", "gene_name": "HDHD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATRRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKESKQDLLERLKKLEFDISEDEIFTSLTAARNLVEQKQVRPMLLVDDRALPDFKGIQTSDPNAVVIGLAPEHFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKATVVGKPEKTFFLEALRGTGCEPEETVMIGDDCRDDVGGAQNAGMRGILVKTGKYRAADEDKINPAPYLTCESFPHAVDHILQHLL", "length": 259 }, "evidence": [ { "id": "F1RZX9", "url": "https://omabrowser.org/oma/group/F1RZX9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYR6-1", "protein_name": "Haloacid dehalogenase-like hydrolase domain-containing protein 2", "gene_name": "Hdhd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAARRVLKAVLVDLSGTLHIEDAAVPGAQEALKRLRAASVMVRFVTNTTKESKRDLLERLRKLEFDISEEEIFTSLTAARNLIEQRQVRPMLLVDDRALPDFTGVQTHDPNAVVIGLAPEHFHYQLLNEAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKAVVVGKPEKTFFLEALRDTDCAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTGKYKAADEEKINPPPYLTCESFPHAVDHILQHLL", "length": 259 }, "evidence": [ { "id": "F1RZX9", "url": "https://omabrowser.org/oma/group/F1RZX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H0R4-1", "protein_name": "Haloacid dehalogenase-like hydrolase domain-containing protein 2", "gene_name": "HDHD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERLRKLEFDISEDEIFTSLTAARSLLERKQVRPMLLVDDRALPDFKGIQTSDPNAVVMGLAPEHFHYQILNQAFRLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYATDTKATVVGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTGKYRASDEEKINPPPYLTCESFPHAVDHILQHLL", "length": 259 }, "evidence": [ { "id": "F1RZX9", "url": "https://omabrowser.org/oma/group/F1RZX9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VLM9-1", "protein_name": "Haloacid dehalogenase-like hydrolase domain-containing protein 2", "gene_name": "15010468", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIKGALIDLSGTLHVEDEPTPNAVEALKRLRDSGVLVKFVTNTTKDSKATLHERLCRIGFQLDASEIYSSLSAAVSYVENERLNPYYILSEDARQDFPPEDTRRYKDSVVIGLAPKAFNYEQLNEAFNVLLENKNHKLIAVHQGKYYKRAEGLALGPGCFVKGLEFATGRTAKVIGKPNPYFFEGALAGRDPASCVMIGDDANDDIVGAMSMGMQGILVKTGKYLPDVKPSPPPTALLENFAEAVDWIIQKNQS", "length": 255 }, "evidence": [ { "id": "F1RZX9", "url": "https://omabrowser.org/oma/group/F1RZX9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1RZX9", "url": "https://www.uniprot.org/uniprotkb/F1RZX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1RZX9", "url": "https://www.uniprot.org/uniprotkb/F1RZX9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1RZX9", "url": "https://www.uniprot.org/uniprotkb/F1RZX9" } ], "pmid": "" }, { "name": "phosphatase activity", "id": "GO:0016791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016791", "evidence": [ { "database": "UniProtKB", "id": "F1RZX9", "url": "https://www.uniprot.org/uniprotkb/F1RZX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1RZX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 259, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1RZX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1RZX9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1RZZ9-1", "uniprot_ac": "F1RZZ9", "uniprot_id": "F1RZZ9_PIG", "mass": { "chemical_mass": 121326.0, "monoisotopic_mass": 121326.0 }, "refseq": { "ac": "XP_005660602", "name": "protein phosphatase 1 regulatory subunit 26", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660602" }, "gene_names": [ { "name": "PPP1R26", "type": "recommended", "evidence": [ { "id": "F1RZZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9" } ] }, { "name": "PPP1R26", "type": "synonym", "evidence": [ { "id": "XP_005660602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660602" } ] } ], "protein_names": [ { "name": "Protein phosphatase 1 regulatory subunit 26", "type": "synonym", "evidence": [ { "id": "F1RZZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9/entry#names_and_taxonomy" } ] }, { "name": "protein phosphatase 1 regulatory subunit 26", "type": "synonym", "evidence": [ { "id": "XP_005660602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660602" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1RZZ9", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP1R26", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000005761", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005761", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519641", "url": "https://www.ncbi.nlm.nih.gov/gene/100519641", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031474", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031474", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519641", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519641", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PWPSRKA", "url": "https://omabrowser.org/oma/group/PWPSRKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1RZZ9", "url": "https://www.orthodb.org/?gene=F1RZZ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15724", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15724", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15724:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15724:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15740", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15740", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1RZZ9", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RZZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLMNAPPVLALQSKWEAFGQPASCRFPRCFSEPKEGIARAAVSAKVHMVISTLQGNGAALGMSGEHARQRSQRAERGHGARLAASPAFAACGLAGLDPKREEGASDLGPLVLDSDSDDSVDRDIEQAIQEYLKAKSGAAPAPGAADGAGGCKSEPPPSSTPAALCAPSLAAGSRGVPSSRRRAGEDRGSASPVSVSSDDSFEQSIRAEIEQFLSEKRQHETQKCDLPADRKPDASNSLAKAACRSGREPTGKAQRQDPAGACKEFVFRKPPRSAKASAQPRGPRSKVTGEPPAIAGRPAEAAPSRGGGRRGAGPGRRGRRVRSATPVREAADSSSDDGIEEAIQLYQLEKRKEAAGDPPQRSPPGEEKGPGPPAHSASLCARSAWPEAHGKAPSRKKPPALKAADLSPDGPDPDQAAQLPKETTAPAPPGNTTANSGRADRSPCRADTSAELMCAEAILDISKTIPPAPLEGGDRALPASPLLSPPNVPSRSDGDSSSVDSDDSIEQEIRTFLALKAQSGSLLARADPCPPPAQSPLPSPGLRAPAKTPDLALSCKRKRGGSGHAVRPCAPKRTRETAVVPEGAQDADRGLGRASETPAREGETQGQPVPGRTGVLGPEHVPADTQGAVSPGPGKVAEARPRDEKESSEDKSSSLDSDEDLDTAIKDLLRSKRRLRKRCRDPRAGCKKKVRFSTTETQFLDKVGAFQKDWRDRSPHLLKSCLSKSRKEGGRPKPDGTTAEDGSPALRPRDRAAGGSLFSSETSAGDPPSPAPSASSLSGDTSSVDSDDSIELEIRKFLAEKAKESVSGLEIQGGGPGALGTGSTARPELPGRKVPPPSPALPPGLSTRSQRGRGPSQPAEGPRGLGRAFPLGGRSSPRAEQACLPAALARCELAPPRSVSGAVSAKGLPAGRRNAHAPKDQSPRGTEPASRESAFGQLPSCTEAGTRAGSQSSLAGALGTERDGGPRPGLALPWSDFAPQSRLPSPWALSSEGRDAAWKGGALGAPRDTGAEGQARGSASLVTDPRRGLPFAGFSPLLPSQLFHFGKSVSWGGKQAGLFSAPLSLPLPGPAFPAFRGAPAGHGPVFGSSHLLVKDSGHWPPRKPRAGLGLHDRRHSGSEDSVLDLRFGRRGRDRDDEDQEALGSDASEFSDTSVEEGGGPVAKGPVLQL", "length": 1170, "header": "tr|F1RZZ9-1|F1RZZ9_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 26 OS=Sus scrofa OX=9823 GN=PPP1R26 PE=4 SV=3 CANONICAL=F1RZZ9-1" }, "isoforms": [ { "isoform_ac": "F1RZZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9/entry", "sequence": { "sequence": "MFLMNAPPVLALQSKWEAFGQPASCRFPRCFSEPKEGIARAAVSAKVHMVISTLQGNGAALGMSGEHARQRSQRAERGHGARLAASPAFAACGLAGLDPKREEGASDLGPLVLDSDSDDSVDRDIEQAIQEYLKAKSGAAPAPGAADGAGGCKSEPPPSSTPAALCAPSLAAGSRGVPSSRRRAGEDRGSASPVSVSSDDSFEQSIRAEIEQFLSEKRQHETQKCDLPADRKPDASNSLAKAACRSGREPTGKAQRQDPAGACKEFVFRKPPRSAKASAQPRGPRSKVTGEPPAIAGRPAEAAPSRGGGRRGAGPGRRGRRVRSATPVREAADSSSDDGIEEAIQLYQLEKRKEAAGDPPQRSPPGEEKGPGPPAHSASLCARSAWPEAHGKAPSRKKPPALKAADLSPDGPDPDQAAQLPKETTAPAPPGNTTANSGRADRSPCRADTSAELMCAEAILDISKTIPPAPLEGGDRALPASPLLSPPNVPSRSDGDSSSVDSDDSIEQEIRTFLALKAQSGSLLARADPCPPPAQSPLPSPGLRAPAKTPDLALSCKRKRGGSGHAVRPCAPKRTRETAVVPEGAQDADRGLGRASETPAREGETQGQPVPGRTGVLGPEHVPADTQGAVSPGPGKVAEARPRDEKESSEDKSSSLDSDEDLDTAIKDLLRSKRRLRKRCRDPRAGCKKKVRFSTTETQFLDKVGAFQKDWRDRSPHLLKSCLSKSRKEGGRPKPDGTTAEDGSPALRPRDRAAGGSLFSSETSAGDPPSPAPSASSLSGDTSSVDSDDSIELEIRKFLAEKAKESVSGLEIQGGGPGALGTGSTARPELPGRKVPPPSPALPPGLSTRSQRGRGPSQPAEGPRGLGRAFPLGGRSSPRAEQACLPAALARCELAPPRSVSGAVSAKGLPAGRRNAHAPKDQSPRGTEPASRESAFGQLPSCTEAGTRAGSQSSLAGALGTERDGGPRPGLALPWSDFAPQSRLPSPWALSSEGRDAAWKGGALGAPRDTGAEGQARGSASLVTDPRRGLPFAGFSPLLPSQLFHFGKSVSWGGKQAGLFSAPLSLPLPGPAFPAFRGAPAGHGPVFGSSHLLVKDSGHWPPRKPRAGLGLHDRRHSGSEDSVLDLRFGRRGRDRDDEDQEALGSDASEFSDTSVEEGGGPVAKGPVLQL", "length": 1170, "header": "tr|F1RZZ9-1|F1RZZ9_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 26 OS=Sus scrofa OX=9823 GN=PPP1R26 PE=4 SV=3 CANONICAL=F1RZZ9-1" }, "locus": { "chromosome": "AEMK02000682.1", "start_pos": 1930592, "end_pos": 1927083, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006337.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006337.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006175.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006175.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 161, "start_aa": "Thr", "end_pos": 161, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr161", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "000000000000000010000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RZZ9", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519641", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519641", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZPW4-1", "protein_name": "Protein phosphatase 1, regulatory subunit 26", "gene_name": "Ppp1r26", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFLMNAPPVVALQSRWEAFGQPRSFCFPDCFSESKEDTSRASVSARVQMLISTLQRDEAALGMNHERVTQRGQRAERSRDTRLAPKPAVCKEQPEFPACGLVANRSTLEKDEAGRHGPLELDSDSDDSVDRDIEEAIQEYLKAKGGASGPVSQGVPSIPEPAHSSALPIPCPSQLTPGSGSVPVGASEDQGSTSPASMSSEDSFEQSIRAEIEQFLHEKRQHEHPKCDGSVDKKSGPNENPARLRGNRETSARAALIGTCKEFIFRKPPRLTKVSTQPRNSQPKLTTEPETPVSTKLAAHRPEAAQSRGGMRRGVPARRSKRIRSSAPVHQTSDSSSDDGIEEAIQLYQLEKTRKEASGDQPLRAQPKEESPGSTQPSALPEAHRRPPSKKKVAVPKVIDTTQGGLHPDPLSKLLTDSRTSVSPGHTAAKSDAVLHQASCLADTSTELMCAEAILDISKTILPAPMEGHDRPPSRNLLFCPQPMPPRSEGDSSNVDSDDSIEQEIRTFLALKAQVGSPQPAQGPLPSPGPSGQPGVPKAKTPDLPLGFKRKRRGGGSTTVPKKIREGRESAQDGDHIQGKVQHGHDGWDPLGQSKITETPGGEAEAKDPPVSSRIVGLSDTHLSQGHGALGKASEKESSEDKSSSLDSDEDLDMAIKDLLRSKRKFRKRGRDPRASCKKVRFGSTETRCGEKLSSLPGDWKDHRQQALRSCLHKCRGDNKDGPGRSPGSTCSSVTERGKLGGIGVEDAIPTFLPRRKSPEGAPPSKDTGASGHPPSASSPTSEDSAVDSDDSIELEIRRFLAEKAKESVRNAEPQGVPAKPEMACRKEPTLGLQPGVCTRSQKARGTPQLAEGRRGPERARTQATSLLSQTGRGALRAEQATHLTSALGRSEPALPKNTSKNSSAKASLPSRKSANVHKDHSPQGIQTAMAESVFGQLPSCATVGTEAGSTKGTFHLNCGSQNLLTPNPGSQADLSLPWSDFAQQSRLSSPWMLNSGQGTVWTGVFRGEKEKGTTPQAGDPPSLSSGPRKGLPFLSTQLFHFGKNVSWGGKQAGFFSPNLGLPLQGPAFSAFRETQPGHNPVFGSPRLLMKDSGNWPSRKAQGTLRQQDRRNSGSEDKVLDLRYRHRVDREQQDQETLGSDASEFSDTSVEDGGSATVSSKGLKL", "length": 1165 }, "evidence": [ { "id": "F1RZZ9", "url": "https://omabrowser.org/oma/group/F1RZZ9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N1P8-1", "protein_name": "Protein phosphatase 1 regulatory subunit 26", "gene_name": "PPP1R26", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFLMNAPPVLALRSAWEAFGPPGSCRFPRCFSEPREGVSRVAASAQVQMAISRLQGDGAALGMSGDHARPGSQRAERGRGSLPTASPAFAAYGLATGLDPKREEEEASNLGPLVPDSDSDDSVDRDIEEAIQEYLRAKSGAAPPPAAGDAARRCGPEPALSGAPAAPCPPNPAAGPSPVQGSASPLSVSSDDSFEQSIQAEIEQFLSEKRLHETQKGDLPADRKADPGDSLARATCRPGREPPLKAPQQDLPGTGKEFVFRKLPRSAKASALPRGLRCKVTAEPAAAATAGPPAEAAPGKGRVRRGAGSARKGRQPRSVALVHEEPDSSSDDGIEEAIRLYQRERRREVRGHQGPLPTEEKGPVAPAHSLRGPWPEALSKTPGKKKPAAPKATDLGPGGPDSEHPPRPPRETTAPVPPGSAAAESLGVDGSPCRADTSAELMCAEAILDISKTILPAPVDGGERPPPTSPLRQGPDGNSSAVDSDDSIEREIRTFLALKAQSGGPLPHTETCARPAHSPPLPPSLSAPAPDTPDPSPGCRRRRSRMPCMPRRPRDTAEMQDAQDAERGQGRVQPGQGRAPEAPRRESESRGPPLPFKTGGPGDELGAPDPLGAAPPGPRQTAEGRRGDVQASSEEKSSSLDSDEDLDTAIKDLLRSKRRLRKRHRDPRASCKKRVRFSTTETQFLDKLGGFQKDWRDRSPHLLKSCLSKSRRDSRETPGRPPHIPSQETSRAKADGSGLEDAPSGPSAPWTRGRAAPRGLFSRESEAREPPGAARSPSSLSDDSSSIDSDDSIELEIRKFLAEKAKESVSGSEIPGGGPATLGTPTGARPELPGRKAPPPGPAAQPGMCTRSQRVRGGLPPGAEGPRGPGRALAPGGGSSPHPEQPCPPAALARCELAPPRSTSGPTPAKGSPAPRRNICAPRDPGPRGPEGVTGEGTFGQLPSHAEAGARVEGHSSLARTPGSQRDGVPRAGLTLPWSDLSPQSRLQSTWVLGPEGRDVAAWRGGLGGQREKGPEGQARGSPSLATDSRRGLPFAGFSPLLSTQLFHFGKSMPWGAKQASLFSPGLGLPLQGPSFSAFREAQATRNPVFGSPRLLVKEGGRWPCRKPRAGLSLSDRRGSGPEESVLDLRFGRRGLDRDDEEPEALGSDASELSDTSVEEGGGPTAQGPVLQL", "length": 1173 }, "evidence": [ { "id": "F1RZZ9", "url": "https://omabrowser.org/oma/group/F1RZZ9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5T8A7-1", "protein_name": "Protein phosphatase 1 regulatory subunit 26", "gene_name": "PPP1R26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLMNASPVVALQSKWEAFGPPGSCRFPRCFSEADEGVESASVSARVQMLISTLQRDGAARGTSDERAAQRGHRAEGCHDARPAAKPTVHKEPPALAVCGLVADFDPMGEEETTDFGPLVLDSDSDDSVDRDIEEAIQEYLKAKSGAAQPGAGGAQPGAAQPSRAAGGGSRCKPEPAHGSAPTALCPPKLVPGSGGGPGSQVGSSKDQGSASPVSVSSDDSFEQSIRAEIEQFLNEKRQHETQKCDGSVEKKPDTNENSAKSLLKSHQEPPTKVVHRQGLLGVQKEFAFRKPPRLAKMNVQPRSLRSKVTTTQENEGSTKPATPCRPSEAAQNKGGIKRSASAARRGKRVMSAAQASEASDSSSDDGIEEAIQLYQLQKTRKEADGDLPQRVQLREERAPDPPAHSTSSATKSALPETHRKTPSKKKLVATKTMDPGPGGLDTDHAPKLLKETKAPPPASPASRSEFVERSSCRADTSAELMCAEAILDISKTILPAPVEGSDGSLSASPLFYSPNVPSRSDGDSSSVDSDDSIEQEIRTFLALKAQSGSLLARGESCPQAAQGPLLPPGLNSQTGGHKTPLSKTPDPLLGCKRKRRGGGHVRPSTPKKMQEVVKDGSQDADHSQGRAEPGHERRDLPIQGKASEALGGEGTARGPGDTRMSQGQGKTDEARRLDEKESSEDKSSSLDSDEDLDTAIKDLLRSKRKLKKRCREPRAACRKKVRFSTAQTHFLEQLGGLRRDWKDRGPPVLKSCLSKSKRDSGEGPGKKPPSVFGSTAERMRQEGAASQDAALAFRVRRPASASASEGNPFPRESQGPAPSPGSLSDDSSSVDSNDSIELEIRKFLAEKAKESVSSSEVQAEGPTALGTGGPARPEVLCRKEPAPPPGVCTRSQRARGVPHLAEGLRGTESAGAQGTAGLFSQGGKGLPAAPARGDPVPPRSTSGGVSAKGLSVSRRNVYVHKDQSPRGAEPAAKSAFGQLPSCATAGTEAGGARGTFHMGCGSPSFLTPSPGAERDAGAQADRTPPWSDFAHQSRLPSPWVLRSEGRDAVWRGGVGSERDKGSEGPARGLPSLPLAGFSPLLSTQLFHFGKGVSWGGRQAGLFSPHLGLPLQGPSFSAFREAQAGPSPVFGSPHLLAKKDGGPWPTRKAQAGLSLHDRRSSGSEESILDLRYRRRVNRDDQEQDALGSDASDFSDTSTEDSGGSSVVKV", "length": 1209 }, "evidence": [ { "id": "F1RZZ9", "url": "https://omabrowser.org/oma/group/F1RZZ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6A025-1", "protein_name": "Protein phosphatase 1 regulatory subunit 26", "gene_name": "Ppp1r26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFLMNAPPVVALQSRWEAFGQPRSFCLPDCFSEAKEDGSRASVSARVQMLISTLQRDEAALGMGHERLTQRGQRAERSRDTRLAPKPAVCKEQPEFPARGLVANCSALEKDEAGRRSPLELDSDSDDSVDRDIEEAIQEYLKARGGASEPMSQGAPSIPEPAHSSTLPIPCPSQLTPGSGSVPVGASEDQGSTSPASMSSEDSFEQSIRAEIEQFLNEKRQHENPKCDGFVDKKSDPNNSPARLRGNRETSARAALMGTCKEFIFRKPPRLTKMSTQQRNFQPKPTTEPETPVSTKLTAHRPEAAQSRGGVRRSMPARRSKRIRSSAPVHQASDSSSDDGIEEAIQLYQLEKTRKEASGDPPLRGQLKEESPGSAQPNALPEAHRRPPSKKKLAVPKVIDTTQGVLHPDPLSRLLTDSRASLPPGHAAAKSEAVCQASRLADTSTELMCAEAILDISKTILPAPMEGSDRPPSRNPLFCPQPMPPRSEGDSSNIDSDDSIEQEIRTFLALKAQVGSPQPAQGPLSSPGPSGQPGIPKVPFAKTLDLPLVCKRKRRGGGGSTTMPKKIREGRESTQDADHIQGKAQPGHDGWDPLGHNKITETPGGEAEAKEQPVISRTVGLSDTHLPQGALGKATEKESSEDKSSSLDSDEDLDMAIKDLLRSKRKFKKRCRDPRASCKKVRFGSTETRCGEKPSNLPGDWKDHRQQALRSCLPKCRGDNKDGPGRSPGSSVAEKAKMGGTGGEDATPAFLLRRKSPEGALPSTDTGASGHPPSASSPTSEDSAVDSDDSIELEIRRFLAEKAKESIRNTEPQGGPAKPEMPCRKDPTLGLQPGVCTRSQKARGTPQLAEGRRGPERARTQATGLLSQSGKGTLRAEQTARLTTALGRSEPALPKNTCRNSSAKASPPSRKSAHVHKDHSPQGSQTATAESVFGQLPSCAKVGAEAGSAGGTFHLNYGSQNLLTPNPGSQADLVLPWSDFAHQSRLSSPWVLNSGQGTVWTGVFRGEKEKGATSQAGAPPSLSSGPRKGLPFLSTQLFHFGKNVSWGGKQTSLFSPNLGLPLQAPAFSAFRETQPGHNPVFGSPHLLMKDSGNWPSRKAQGTLRQQDRRNSASEDKVLDLRYRHRVDREPQDQETLGSDASEFSDTSMEDGGSATVSSKGLKL", "length": 1163 }, "evidence": [ { "id": "F1RZZ9", "url": "https://omabrowser.org/oma/group/F1RZZ9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1RZZ9", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "F1RZZ9", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1RZZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1RZZ9" }, { "id": "PF15740", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15740" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein phosphatase 1 regulatory subunit 26 N-terminal", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 806, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 161 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 432, "end_pos": 434 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, 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"59628", "url": "https://www.rhea-db.org/rhea/59628", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S0E1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPRRGLSEPDVFLGSGFLLAAEGAEHVSGDTLEAGPAAWERVSRELWRQPERTPSACAGAVGREEGGIQPAVPRSADRLAAVGTMRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHGVLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGHACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDAAEHDLIVKYYGKASHAAAYPWEGLNALDAAVLAYNNLSVLRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYLRAPSVKELPVLTKKAEDCFRAAALATGCTVEIKAGAHDYYNVLPNKSLWKAYVENGKKLGIDFISEDAVFNGPSGSTDFGNVTFVVPGIHPYFYIGSQALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEKIREDFKLKLREEEFLNTVE", "length": 519, "header": "tr|F1S0E1-1|F1S0E1_PIG Isoform 1 of Xaa-Arg dipeptidase OS=Sus scrofa OX=9823 GN=PM20D2 PE=1 SV=2 CANONICAL=F1S0E1-1" }, "isoforms": [ { "isoform_ac": "F1S0E1-1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1/entry", "sequence": { "sequence": "MDPRRGLSEPDVFLGSGFLLAAEGAEHVSGDTLEAGPAAWERVSRELWRQPERTPSACAGAVGREEGGIQPAVPRSADRLAAVGTMRPEEERPVEGGACVGVSQLELLKLRAADCIDEAAERLGALSRAIWNKPELAYEEHHAHGVLTRFFESEPPAGSWAVQPHYQLATAFRAEWGPPPRGLAATRPLHLGFLCEYDALPDIGHACGHNLIAEVGAAAALGVKGCLESLPGPPLPVKVVVLGTPAEEDGGGKIDLIEAGAFTNLDVVFMAHPSQENAAYLPDAAEHDLIVKYYGKASHAAAYPWEGLNALDAAVLAYNNLSVLRQQMKPTWRVHGIIKNGGVKPNIIPSYSELIYYLRAPSVKELPVLTKKAEDCFRAAALATGCTVEIKAGAHDYYNVLPNKSLWKAYVENGKKLGIDFISEDAVFNGPSGSTDFGNVTFVVPGIHPYFYIGSQALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLEKIREDFKLKLREEEFLNTVE", "length": 519, "header": "tr|F1S0E1-1|F1S0E1_PIG Isoform 1 of Xaa-Arg dipeptidase OS=Sus scrofa OX=9823 GN=PM20D2 PE=1 SV=2 CANONICAL=F1S0E1-1" }, "locus": { "chromosome": "1", "start_pos": 57214303, "end_pos": 57188535, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004769.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004769.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004658.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004658.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S0E1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157591", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157591", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KG59-1", "protein_name": "Xaa-Arg dipeptidase", "gene_name": "Pm20d2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGPVVERPAEPGTSSAAELELLKRRAAERIDEAAERLGALSRAIWSAPELAYEEHRAHGELTRFFECEPPAASWAVQPHFGLPTAFRAEWAPPESAAGPRALQVAFLCEYDALPALGHACGHNLIAEVGVAAALGLRAALESIAAPPPVKVIVLGTPAEEDGGGKIDLIEAGAFENLDVVFMAHPSQENAAYLPDVAEHDVTVKYYGKASHAAAYPWEGVNALDAAVLAYTNLSVLRQQMKPTWRVHGIIKNGGVKPNIIPSYSELVYYFRAPSMKELQVLTKKAEDCFRAAALATGCTVDIESEAHDYYNVIPNKTLCSAYTENGKKLGMEFISEDAVLNGPSGSTDFGNVSFVVPGIHPYFYIGTDALNHTEQYTEAAGSQAAQLYTLRTAKALAMTALDVIFKPALLEGVRKEFKCKLQEEQLLNTAA", "length": 431 }, "evidence": [ { "id": "F1S0E1", "url": "https://omabrowser.org/oma/group/F1S0E1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4AAB5-1", "protein_name": "Xaa-Arg dipeptidase", "gene_name": "Pm20d2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGPVVERPAERCTSSATELELLKQRAAERIDEAAERLGALSRAIWSAPELAYEEHRAHGELTRFFEREPPAASWAVQPHFGLPTAFRAEWAPPEAAAGPGALQLAFLCEYDALPALGHACGHNLIAEVGAAAALGLRAALESIAAPPPVKVIVLGTPAEEEGGGKIDLIKAGAFENLDVVFMAHPSQENAAYLPDVAEHDVTVKYYGKASHAAAYPWEGVNALDAAVLAYNNLSALRQQMKPTWRVHGIIKNGGVKPNIIPSYSELLYYFRAPSMKELHVLTKKAEDSFRAAALATGCTVEIKSEAHDYYNVIPNKTLCSAYMENGKKLGVEFISEDAVLNGPSGSTDFGNVSFVVPGIHPYFYIGTDALNHTEEYTEAAGSQAAQWYTLRTAKALAMTALDVIFKPQLLEGIRKEFKSKLQEEQLLNTPA", "length": 431 }, "evidence": [ { "id": "F1S0E1", "url": "https://omabrowser.org/oma/group/F1S0E1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X6X9-1", "protein_name": "Xaa-Arg dipeptidase", "gene_name": "PM20D2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPGEERPVEGGACASVSDLELLKLRAAECVDAAAERLGALSRAIWSEPELAYEEHHAHGVLTRFFQSETPAGSWAVQPHYQLATAFRAEWGSPGGWAAPRPLHLGFLCEYDALPGIGHACGHNLIAEVGAAAALGVKGALESLAGLPLPVKVIVLGTPAEEDGGGKIDLIEAGAFKNLDVVFMAHPSQENAAYLPDVAEHDVTVKYYGKASHAAAYPWEGLNALDAAVLAYNNLSVLRQQLKPTWRVHGIIKNGGVKPNIIPSYSELIYYFRAPSMKELPVLTKKAEDCFRAAALATGCTVEINGGAHDYYNVLPNKSLWKAYVENGKKLGIDFISEDAMFSGPSGSTDFGNVSFVVPGIHPYFYIGSNALNHTEQYTEAAGSQEAQFYTLRTAKALAMTALDVIFKPELLARIREDFRLKLEEEKF", "length": 428 }, "evidence": [ { "id": "F1S0E1", "url": "https://omabrowser.org/oma/group/F1S0E1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8IYS1-1", "protein_name": "Xaa-Arg dipeptidase", "gene_name": "PM20D2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": 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"name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1S0E1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1" } ], "pmid": "" }, { "name": "regulation of protein metabolic process", "id": "GO:0051246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051246", "evidence": [ { "database": "UniProtKB", "id": "F1S0E1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1S0E1", "url": "https://www.uniprot.org/uniprotkb/F1S0E1" } ], "pmid": "" }, { "name": "carboxypeptidase activity", "id": "GO:0004180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004180", "evidence": [ { "database": "UniProtKB", "id": "F1S0E1", "url": 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"https://www.rhea-db.org/rhea/59608" } ] }, { "id": "59612", "name": "", "equation": "beta-alanyl-L-ornithine + H2O = beta-alanine + L-ornithine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59612", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59612" } ] }, { "id": "59620", "name": "", "equation": "N(2)-(4-aminobutanoyl)-L-lysine + H2O = 4-aminobutanoate + L-lysine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59620", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59620" } ] }, { "id": "59624", "name": "", "equation": "N(2)-(4-aminobutanoyl)-L-ornithine + H2O = 4-aminobutanoate + L-ornithine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59624", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59624" } ] }, { "id": "59628", "name": "", "equation": "N(2)-(4-aminobutanoyl)-L-arginine + H2O = 4-aminobutanoate + L-arginine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59628", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59628" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S0E1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 519, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S0E1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S0E1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S0E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0E1" }, { "id": "PF07687", "database": "Pfam", "url": 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"GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517621", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517621", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NYTNFVC", "url": "https://omabrowser.org/oma/group/NYTNFVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S0G4", "url": "https://www.orthodb.org/?gene=F1S0G4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34645", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34645", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34645:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34645:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003121330", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121330", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S0G4", "url": "https://www.uniprot.org/uniprotkb/F1S0G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0G4-1", "url": "https://www.uniprot.org/uniprotkb/F1S0G4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGNPNYTSFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILDIGTDILNKEEQFQEAVLKERIAKAEADIWAKADERQRQAVKKALDEANDMHKMKIQILKEHHQKDLQDMAAKTKIELHQNMEDELQRERLAAEQRMVHRIQRVMMECHREKVQAVEEARAEERRKAQEAIQAQRREAMEELLSAGVTVMKDQKKTVSQMIKEKEHEINIYYSMAQRQKQEEVQEVLQEAEKTHQAKLGNVMDKLVNTQGELLTIAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLSPGQADFILPERKKTPSNLIIQENETTLN", "length": 329, "header": "tr|F1S0G4-1|F1S0G4_PIG Isoform 1 of Chromosome 6 open reading frame 163 OS=Sus scrofa OX=9823 GN=C1H6orf163 PE=4 SV=3 CANONICAL=F1S0G4-1" }, "isoforms": [ { "isoform_ac": "F1S0G4-1", "url": "https://www.uniprot.org/uniprotkb/F1S0G4/entry", "sequence": { "sequence": "MIGNPNYTSFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILDIGTDILNKEEQFQEAVLKERIAKAEADIWAKADERQRQAVKKALDEANDMHKMKIQILKEHHQKDLQDMAAKTKIELHQNMEDELQRERLAAEQRMVHRIQRVMMECHREKVQAVEEARAEERRKAQEAIQAQRREAMEELLSAGVTVMKDQKKTVSQMIKEKEHEINIYYSMAQRQKQEEVQEVLQEAEKTHQAKLGNVMDKLVNTQGELLTIAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLSPGQADFILPERKKTPSNLIIQENETTLN", "length": 329, "header": "tr|F1S0G4-1|F1S0G4_PIG Isoform 1 of Chromosome 6 open reading frame 163 OS=Sus scrofa OX=9823 GN=C1H6orf163 PE=4 SV=3 CANONICAL=F1S0G4-1" }, "locus": { "chromosome": "1", "start_pos": 55788278, "end_pos": 55765774, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095132.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095132.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075300.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075300.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S0G4", "url": "https://www.uniprot.org/uniprotkb/F1S0G4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517621", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517621", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XAF1-1", "protein_name": "C6orf163 homolog", "gene_name": "C6orf163", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIRSTDLDSFVCCAVCSKIIPPPPSAASFDRIREYKPFRTRYYTHRDILEIGASIQQEERERKEAEIQERIEKMKAELWSQAEQYKEDAVDKALTEAAANYSAFVQDLKLKLEKEIREAVRKAKAEMKEYMEEEQRREIEATEQRMAHKLRCALLECAKEKMQAVAKARKQEREVALSEAAVQHRKHIEQLKEESMLAEELYRKTIEQLNRGKCNEMNIALSIKQKENEIEMEKQMKELETIHLDELEKVMITLKTAEDQVKALEQKLEKMRAWKDSLETEIQATRQAFQKYIDATFPNLSPGQADFILPLRTTFEPKDIPKEAEGNDNKKPSTESVRVTAMSKQHFK", "length": 348 }, "evidence": [ { "id": "F1S0G4", "url": "https://omabrowser.org/oma/group/F1S0G4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FHA7-1", "protein_name": "Uncharacterized protein C6orf163 homolog", "gene_name": "CUNH6orf163", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIRNPDYKNFVCCSVCNKIIPPAPFGETFKRIYEYKPFKTRFYTHKDILDIGASILNQEEHFQEATLRETIANAEANVWKQANKLQQQAVDKALADANDRHEFEVQVLEEQHQRDLKAVEKKTKMEMFQNMEEELKRENSAAEQRMVHRIQRIMMECHREKMEAVKKAREEERELAQKAVEEETRKVMEELVSSGLTALRDHKTNLGELIKAKEKEMNAYYGLAQRQKQEEVQEVLQEAEKAHQANLDNVKFKLVNTQGELVSVAKQLGIMTNWKDFLEEELQETREAFQKYINYTFPRLSPGHADFILPERKKTPSKLLSDSETSA", "length": 327 }, "evidence": [ { "id": "F1S0G4", "url": "https://omabrowser.org/oma/group/F1S0G4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZAP6-1", "protein_name": "Similar to human chromosome 6 open reading frame 163", "gene_name": "C5h6orf163", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIRNPDFTNFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILEIGDSILNQEEQFQEAALKETIKKAEAKVWEKAETLQRQAVDQALEDADARHKFEIRVLEEQHQKDLKALEAKTKVEMIQQMDDELKREHTAAEQRMVHRIQRIMMECHREKMEAVQKAREEEREIAQKVIEDQRSIVLEELVTTGVTAIKDQKASLGQLIKAKEHEMNVYYGIAQRQKQEEVQEVLQEKEKTHQATLDNVMGKLVNTQGELLSVAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLTPGHADFILPERKKTPSRLAKETDKSTD", "length": 328 }, "evidence": [ { "id": "F1S0G4", "url": "https://omabrowser.org/oma/group/F1S0G4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2TBK0-1", "protein_name": "Uncharacterized protein C6orf163 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIRNPNYTNFVCCAVCNKIIPPAPFGETFKRIHEYKPFKTRFYTHKDILDIGKDILNKEEQFQEDALKERIAQAEADIWAKADERQRQAVKKALEEANDMYKMQIQFLKEEHEKELKEMATRTKMQLHKNLEEELQREHLAAEQRMVHRIQRIMMECHREKVQAVQEAREQERLMAQEEIQSQRRKAMEELMSSGVTVVKDQKKNVNQLIKEKQHEMNLYYCMTQRQKQEEVQEVLQEAEKTHQAKLGSVMDKLVNTQGELLSIAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPKLSPGHADFILPERKKTPSNLIIPENQTTPD", "length": 329 }, "evidence": [ { "id": "F1S0G4", "url": "https://omabrowser.org/oma/group/F1S0G4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3V037-1", "protein_name": "Uncharacterized protein C6orf163 homolog", "gene_name": "Gm136", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIRNPNYTDFVCCAVCNKIIPPAPFGETFKRIYDYKPFKTRFYTHKDILDIGASILNKEEEFRETVFKEQIKKAEAKVWEKAELLQKQAVDQAVEDAEARHKFEIRVLEEQHQKDLKALEDKTKVNMIQQMKEELNREHTAAEQRMVHRIQRIMMECHQEKMEAVKKAREEERRIAQKAIEEEKSKVLEEFVTTGVTVIKDKKTSLGQLIKAKEHEMTIYYGMAQRQKQEEVQEVLQEAEKTHQATLDNMMGKLVNTQGELLSVAKQLGIMTNWKDFLEEELQETRAAFQKYINYTFPRLSPGHADFILPERKKTPSILAKENEPRTD", "length": 328 }, "evidence": [ { "id": "F1S0G4", "url": "https://omabrowser.org/oma/group/F1S0G4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TEZ5-1", "protein_name": "Uncharacterized protein C6orf163", "gene_name": "C6orf163", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIRNSDYKNFVCCAVCNKIIPPAPFGKTFKRIHEYKPLKTRFYTHKDILDIGANILKKEEQFQEDILREHIAKAEAEVWAQANERQKQAVEKALEEANDRHKIEIQILKEEHQKDLQEVTAKTKTEMYQNMDDEMKREHLAAEQRMVHRIQRIMMECHREKVEAVEKARAEERHIAQEAIQAQKSKAVEEIVNTGVTVIKDEKTSVARLMREKEHEMSILYGIAQRQRQEEVQEVLQEAEKTHQATLGNMMDKLANTQGELLSIAKQLGIMTNWKDFLEEELQETRMAFQKYINYTFPKLSPGHADFILPERKKTPSNLVIKENKTTLD", "length": 329 }, "evidence": [ { "id": "F1S0G4", "url": "https://omabrowser.org/oma/group/F1S0G4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S0G4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 329, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S0G4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S0G4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 294, "end_pos": 296 }, { "start_pos": 324, "end_pos": 326 }, { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S0H4-1", "uniprot_ac": "F1S0H4", "uniprot_id": "F1S0H4_PIG", "mass": { "chemical_mass": 42468.0, "monoisotopic_mass": 42468.0 }, "refseq": { "ac": "XP_020930514", "name": "glycosyltransferase-like domain-containing protein 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930514" }, "gene_names": [ { "name": "GTDC1", "type": "recommended", "evidence": [ { "id": "F1S0H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0H4" } ] }, { "name": "GTDC1", "type": "synonym", "evidence": [ { "id": "XP_020930514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930514" } ] } ], "protein_names": [ { "name": "tRNA-queuosine alpha-mannosyltransferase", "type": "recommended", "evidence": [ { "id": "F1S0H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0H4/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.110", "type": "synonym", "evidence": [ { "id": "F1S0H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0H4/entry#names_and_taxonomy" } ] }, { "name": "Glycosyltransferase-like domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1S0H4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0H4/entry#names_and_taxonomy" } ] }, { "name": "glycosyltransferase-like domain-containing protein 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_020930514", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930514" } ] } ], "function": [ { "annotation": "Glycosyltransferase that specifically catalyzes mannosylation of cytoplasmic tRNA(Asp) modified with queuosine at position 34 (queuosine(34)). Mannosylates the cyclopentene moiety of queuosine(34) in tRNA(Asp) to form mannosyl-queuosine(34). Mannosylation of queuosine(34) in tRNA(Asp) is required to slow-down elongation at cognate codons, GAC and GAU, thereby regulating protein translation.", "evidence": [ { "database": "UniProtKB", "id": "F1S0H4", "url": "https://www.uniprot.org/uniprotkb/F1S0H4#function" }, { "database": "UniProtKB", "id": "ARBA00045402", "url": "https://www.uniprot.org/uniprotkb/ARBA00045402#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S0H4", "url": "https://www.uniprot.org/uniprotkb/F1S0H4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GTDC1", "url": "https://www.uniprot.org/uniprotkb/F1S0H4", "locus": { "chromosome": "15", "start_pos": 8051594, "end_pos": 7757935, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015670", "url": 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S0L8-1", "uniprot_ac": "F1S0L8", "uniprot_id": "F1S0L8_PIG", "mass": { "chemical_mass": 63967.0, "monoisotopic_mass": 63967.0 }, "refseq": {}, "gene_names": [ { "name": "MTDH", "type": "recommended", "evidence": [ { "id": "F1S0L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ] } ], "protein_names": [ { "name": "Metadherin", "type": "synonym", "evidence": [ { "id": "F1S0L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0L8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTDH", "url": "https://www.uniprot.org/uniprotkb/F1S0L8", "locus": { "chromosome": "4", "start_pos": 39051537, "end_pos": 39113385, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006084", "url": "https://www.ensembl.org/id/ENSSSCG00000006084" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006084", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006084", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153168", "url": "https://www.ncbi.nlm.nih.gov/gene/100153168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NPVSFSM", "url": "https://omabrowser.org/oma/group/NPVSFSM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZU54", "url": "https://www.orthodb.org/?gene=A0A286ZU54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A287A8V4", "url": "https://www.orthodb.org/?gene=A0A287A8V4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23251:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23251:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZU54", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZU54-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8V4", "url": "https://www.uniprot.org/uniprotkb/A0A287A8V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0N5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0N5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0L8-1", "url": "https://www.uniprot.org/uniprotkb/F1S0L8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARSWQDELAHQAEEGSARLREMLSVGLSFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKQRSPPRKREEAAASPAPAADDLALLKNLRNEEQKKKNRKKLPEKPKPNGRTVEVAEEEVVRTPRNVTAKQPPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVQTDSGSLDSTIPGIENIITVTTEQVTTASFPVGSKKNKGDSHLNVQVSNFKSGKGESTLQVSSGLNENLTVNGGGWNEKSVKLPSQISAGEEKWNSVSPASAGKRKTEPSAWGQDTGEANANGKDWGRSWSDRSIFSGIGSTAEPVSQSTTSDYQWDASGNQPYIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVEEERASLLKSQEPIPDDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSPTQDTEELEKEIREELPVNTSKVRPKQEKAFSLKTISTSDPAEALIRNSQPIKTLPPTISTEPSVTLSKSDSDKSSSQVPPMLQETDKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET", "length": 582, "header": "tr|F1S0L8-1|F1S0L8_PIG Isoform 1 of Metadherin OS=Sus scrofa OX=9823 GN=MTDH PE=1 SV=2 CANONICAL=F1S0L8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZU54-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU54/entry", "sequence": { "sequence": "MAARSWQDELAHQAEEGSARLREMLSVGLSFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKQRSPPRKREEAAASPAPAADDLALLKNLRNEEQKKKNRKKLPEKPKPNGRTVEVAEEEVVRTPRNVTAKQPPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVQTDSGSLDSTIPGIENIITVTTEQVTTASFPVGSKKNKGDSHLNVQVSNFKSGKGESTLQVSSGLNENLTVNGGGWNEKSVKLPSQISAGEEKWNSVSPASAGKRKTEPSAWGQDTGEANANGKDWGRSWSDRSIFSGIAAWSSVDRGMNTSEQNSASFASLTLNSAGSGSTAEPVSQSTTSDYQWDASGNQPYIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVEEERASLLKSQEPIPDDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSPTQDTEELEKEIREELPVNTSKVRPKQEKAFSLKTISTSDPAEALIRNSQPIKTLPPTISTEPSVTLSKSDSDKSSSQVPPMLQETDKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET", "length": 612, "header": "tr|A0A286ZU54-1|A0A286ZU54_PIG Computationally mapped isoform of Metadherin OS=Sus scrofa OX=9823 GN=MTDH PE=1 SV=1 CANONICAL=F1S0L8-1" }, "locus": { "chromosome": "4", "start_pos": 39113032, "end_pos": 39055954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052010.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052010.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035194.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035194.1" } ] } }, { "isoform_ac": "A0A287A8V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8V4/entry", "sequence": { "sequence": "MAARSWQDELAHQAEEGSARLREMLSVGLSFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKQRSPPRKREEAAASPAPAADDLALLKNLRNEEQKKKNRKKLPEKPKPNGRTVEVAEEEVVRTPRNVTAKQPPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVQTDSGSLDSTIPGIENIITVTTEQVTTASFPVGSKKNKGDSHLNVQVSNFKSGKGESTLQVSSGLNENLTVNGGGWNEKSVKLPSQISAGEEKWNSVSPASAGKRKTEPSAWGQDTGEANANGKDWGRSWSDRSIFSGIDGLSSADPSSDWNAPAEEWGNWVEEERASLLKSQEPIPDDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSPTQDTEELEKEIREELPVNTSKVRPKQEKAFSLKTISTSDPAEALIRNSQPIKTLPPTISTEPSVTLSKSDSDKSSSQVPPMLQETDKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET", "length": 549, "header": "tr|A0A287A8V4-1|A0A287A8V4_PIG Computationally mapped isoform of Metadherin OS=Sus scrofa OX=9823 GN=MTDH PE=1 SV=1 CANONICAL=F1S0L8-1" }, "locus": { "chromosome": "4", "start_pos": 39113032, "end_pos": 39055954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040545.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040545.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040368.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040368.1" } ] } }, { "isoform_ac": "A0A5G2R0N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0N5/entry", "sequence": { "sequence": "MAARSWQDELAHQAEEGSARLREMLSVGLSFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKQRSPPRKREEAAASPAPAADDLALLKNLRNEEQKKKNRKKLPEKPKPNGRTVEVAEEEVVRTPRNVTAKQPPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVQTDSGSLDSTIPGIENIITVTTEQVTTASFPVGSKKNKGDSHLNVQVSNFKSGKGESTLQVSSGLNENLTVNGGGWNEKSVKLPSQISAGEEKWNSVSPASAGKRKTEPSAWGQDTGEANANGKDWGRSWSDRSIFSGIAAWSSVDRGMNTSEQNSASFASLTLNSAGSGSTAEPVSQSTTSDYQWDASGNQPYIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVEEERASLLKSQEPIPDDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSPTQDTEELEKEIREELPVNTSKVRPKQEKAFSLKTISTSDPAEALIRNSQPIKTLPPTISTEPSVTLSKSDSDKSSSQVPPMLQETDKSKSNTKQNSVPPSQTAQEMAQKTKKKKKRKEDRKAARE", "length": 613, "header": "tr|A0A5G2R0N5-1|A0A5G2R0N5_PIG Computationally mapped isoform of Metadherin OS=Sus scrofa OX=9823 GN=MTDH PE=1 SV=1 CANONICAL=F1S0L8-1" }, "locus": { "chromosome": "4", "start_pos": 39113032, "end_pos": 39056195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091487.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091487.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064071.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064071.1" } ] } }, { "isoform_ac": "F1S0L8-1", "url": "https://www.uniprot.org/uniprotkb/F1S0L8/entry", "sequence": { "sequence": "MAARSWQDELAHQAEEGSARLREMLSVGLSFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKQRSPPRKREEAAASPAPAADDLALLKNLRNEEQKKKNRKKLPEKPKPNGRTVEVAEEEVVRTPRNVTAKQPPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVQTDSGSLDSTIPGIENIITVTTEQVTTASFPVGSKKNKGDSHLNVQVSNFKSGKGESTLQVSSGLNENLTVNGGGWNEKSVKLPSQISAGEEKWNSVSPASAGKRKTEPSAWGQDTGEANANGKDWGRSWSDRSIFSGIGSTAEPVSQSTTSDYQWDASGNQPYIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVEEERASLLKSQEPIPDDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSPTQDTEELEKEIREELPVNTSKVRPKQEKAFSLKTISTSDPAEALIRNSQPIKTLPPTISTEPSVTLSKSDSDKSSSQVPPMLQETDKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET", "length": 582, "header": "tr|F1S0L8-1|F1S0L8_PIG Isoform 1 of Metadherin OS=Sus scrofa OX=9823 GN=MTDH PE=1 SV=2 CANONICAL=F1S0L8-1" }, "locus": { "chromosome": "4", "start_pos": 39113032, "end_pos": 39055954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006675.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006675.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006496.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006496.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YA02-1", "protein_name": "Metadherin", "gene_name": "MTDH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAGGWQEAAAQQAEETAARVRDVLSGGLGLLRAELGLELGLDPQGLPTWLALALPAALGLALLGLFLAAACGGGLRKKAARSAPERKGDEAAALTAGGGPGRAAGPGPGLLKGDEQKKRNKKKLPEKAARPNGRSFLDVSEDEVIQPVRKENTKQPLDAEKKNEKSKKKKKSKGDAKTVPDASRLDGKEADEGTWETKISNREKRQQRKRDKVMTDGGSGESNLQGTESTATVSIEQLMPPPSLPVGLRKNKGDTLLNVQVSSSKPSKGESSVPQVSPGLNESHTVNGGSWNEKPVKISSQIGVGEEKWTPVSSATAGKRKTETSAWAQDAADANGNGKDWGVSLVSRPWKERSLFTPIDAWKVDARINTSEQNSTSFSSFGLTPGVSGTNSESVSQAGTSDFPWDLSHTQPPVDDEWSGLNGLSSADPSSDWNAPAEEWGNWVDEEKVASVPQPEEALSDVQKALDNEREKAEPVLQSSASGKSKKKKKKKKKQGEEANSPSQDTEELDREAGEEFQEDTSKAKPQQEIAFSLKTISTSEPAKPEEAPSLAVSTEPSVIVSESDSVKIASQVPQMLQETDVSSPSIKQNSVPPPQTKSEESWESPKQVKKKKKARRET", "length": 620 }, "evidence": [ { "id": "F1S0L8", "url": "https://omabrowser.org/oma/group/F1S0L8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q80WJ7-1", "protein_name": "Protein LYRIC", "gene_name": "Mtdh", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAARSWQDELAQQAEEGSARLRELLSVGLGFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKRRSPPRKREEAAPPTPAPDDLAQLKNLRSEEQKKKNRKKLPEKPKPNGRTVEVPEDEVVRNPRSITAKQAPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVLTDSGSLDSTIPGIENIITVTTEQLTTASFPVGSKKNKGDSHLNVQVSNFKSGKGDSTLQVSSRLNENLTVNGGGWSEKSVKLSSQLSEEKWNSVPPASAGKRKTEPSAWTQDTGDTNANGKDWGRNWSDRSIFSGIGSTAEPVSQSTTSDYQWDVSRNQPYIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVDEDRASLLKSQEPISNDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSHTQDTEDLEKDTREELPVNTSKARPKQEKACSLKTMSTSDPAEVLIKNSQPVKTLPPAISAEPSITLSKGDSDNSSSQVPPMLQDTDKPKSNAKQNSVPPSQTKSETNWESPKQIKKKKKARRET", "length": 579 }, "evidence": [ { "id": "F1S0L8", "url": "https://omabrowser.org/oma/group/F1S0L8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UE4-1", "protein_name": "Protein LYRIC", "gene_name": "MTDH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAARSWQDELAQQAEEGSARLREMLSVGLGFLRTELGLDLGLEPKRYPGWVILVGTGALGLLLLFLLGYGWAAACAGARKKRRSPPRKREEAAAVPAAAPDDLALLKNLRSEEQKKKNRKKLSEKPKPNGRTVEVAEGEAVRTPQSVTAKQPPEIDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVLTDSGSLDSTIPGIENTITVTTEQLTTASFPVGSKKNKGDSHLNVQVSNFKSGKGDSTLQVSSGLNENLTVNGGGWNEKSVKLSSQISAGEEKWNSVSPASAGKRKTEPSAWSQDTGDANTNGKDWGRSWSDRSIFSGIGSTAEPVSQSTTSDYQWDVSRNQPYIDDEWSGLNGLSSADPNSDWNAPAEEWGNWVDEERASLLKSQEPIPDDQKVSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSTAQDTEELEKEIREDLPVNTSKTRPKQEKAFSLKTISTSDPAEVLVKNSQPIKTLPPATSTEPSVILSKSDSDKSSSQVPPILQETDKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET", "length": 582 }, "evidence": [ { "id": "F1S0L8", "url": "https://omabrowser.org/oma/group/F1S0L8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1W6-1", "protein_name": "Protein LYRIC", "gene_name": "Mtdh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAARSWQDELAQQAEEGSARLRELLSVGLGFLRTELGLDLGLEPKRYPSWVILVGTGALGLLLLFLLGYGWAAACAGARKKRRSPPRKREEVTPPTPAPEDPAQLKNLRSEEQKKKNRKKLPEKPKPNGRTVEIPEDEVVRTPRSITAKQPPETDKKNEKSKKNKKKSKSDAKAVQNSSRHDGKEVDEGAWETKISHREKRQQRKRDKVLTDSGSLDSTIPGIENTITVTTEQLTTASFPVGSKKNKGDSHLNVQVSNFKSGKGDSTLQVSSGLNENITVNGGGWSEKSVKLSSQLSAGEEKWNSVPPASAGKRKTEQSAWTQDPGDTNANGKDWGRNWSDRSIFSGIGSTAEPVSQSTTSDYQWDGSRNQPHIDDEWSGLNGLSSADPSSDWNAPAEEWGNWVDEDRASLLKSQEPISNDQKDSDDDKEKGEGALPTGKSKKKKKKKKKQGEDNSITQDTEDLEKDTREELPVNTSKARPKQEKACSLKTMSTSDPVEVLIKNSQPIKTLPPAISAEPSVTLSKGDSDKSSSQVPPMLQDTDKPKSNAKQNSVPPSQTKSETNWESPKQIKKKKKARRET", "length": 581 }, "evidence": [ { "id": "F1S0L8", "url": "https://omabrowser.org/oma/group/F1S0L8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ], "pmid": "" }, { "name": "positive regulation of angiogenesis", "id": "GO:0045766", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045766", "evidence": [ { "database": "UniProtKB", "id": "F1S0L8", "url": "https://www.uniprot.org/uniprotkb/F1S0L8" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": 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"https://data.glygen.org/ln2downloads/pdb/current/AF-F1S0Q5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S0Q5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S0Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0Q5" }, { "id": "PS50195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PX", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 109, "start_aa": "Met", "end_aa": "Thr", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 255, "end_pos": 257 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S0S8-1", "uniprot_ac": "F1S0S8", "uniprot_id": "F1S0S8_PIG", "mass": { "chemical_mass": 91550.0, "monoisotopic_mass": 91550.0 }, "refseq": {}, "gene_names": [ { "name": "GTF3C4", "type": "recommended", "evidence": [ { "id": "F1S0S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0S8" } ] } ], "protein_names": [ { "name": "Ral transcription factor IIIC subunit 4", "type": "synonym", "evidence": [ { "id": "F1S0S8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0S8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S0S8", "url": "https://www.uniprot.org/uniprotkb/F1S0S8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GTF3C4", "url": "https://www.uniprot.org/uniprotkb/F1S0S8", "locus": { "chromosome": "1", "start_pos": 272479965, "end_pos": 272454503, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005731", "url": "https://www.ensembl.org/id/ENSSSCG00000005731" } ] } } ], "crossref": [ { "id": "F1S0S8", "url": "https://alphafold.ebi.ac.uk/entry/F1S0S8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005731", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005731", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024764", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024764", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045803", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045803", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NGHVWLR", "url": "https://omabrowser.org/oma/group/NGHVWLR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15496:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15496:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12657", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12657", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12660", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12660", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S0S8", "url": "https://www.uniprot.org/uniprotkb/F1S0S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0S8-1", "url": "https://www.uniprot.org/uniprotkb/F1S0S8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTADKARVGPAADRPAPEEEEGEAGGKGPVADPAPGPSAAFRLLVTRREPAVRLQYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFATSKDPTISQTFMLDRVFNPEGKALPPLRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQANLNRLQWVQLADLTEIYGERLYETSYRFSKSEAPQGSLGDFAEFQRRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESISSCNTIESGITSPSVLFWWEYEHSNRKMSGLIVGSAFGPVKILPVNLKAVKGYFTLRQPVVLWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLADVFGSVRTHGIAVSPCGAYLAVITTEGMVNGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLQEALEKKMESSGATYYWRFKLFLLRILYQSMQKTPEALWKPTHEDSKILLVDSPGMGNAEDEQQDEGTSSKPVNKPGLQERSKEGDAEDAAAAAAESPTQAGDTGGREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEEYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF", "length": 819, "header": "tr|F1S0S8-1|F1S0S8_PIG Isoform 1 of Ral transcription factor IIIC subunit 4 OS=Sus scrofa OX=9823 GN=GTF3C4 PE=1 SV=3 CANONICAL=F1S0S8-1" }, "isoforms": [ { "isoform_ac": "F1S0S8-1", "url": "https://www.uniprot.org/uniprotkb/F1S0S8/entry", "sequence": { "sequence": "MNTADKARVGPAADRPAPEEEEGEAGGKGPVADPAPGPSAAFRLLVTRREPAVRLQYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFATSKDPTISQTFMLDRVFNPEGKALPPLRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQANLNRLQWVQLADLTEIYGERLYETSYRFSKSEAPQGSLGDFAEFQRRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESISSCNTIESGITSPSVLFWWEYEHSNRKMSGLIVGSAFGPVKILPVNLKAVKGYFTLRQPVVLWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLADVFGSVRTHGIAVSPCGAYLAVITTEGMVNGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLQEALEKKMESSGATYYWRFKLFLLRILYQSMQKTPEALWKPTHEDSKILLVDSPGMGNAEDEQQDEGTSSKPVNKPGLQERSKEGDAEDAAAAAAESPTQAGDTGGREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEEYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF", "length": 819, "header": "tr|F1S0S8-1|F1S0S8_PIG Isoform 1 of Ral transcription factor IIIC subunit 4 OS=Sus scrofa OX=9823 GN=GTF3C4 PE=1 SV=3 CANONICAL=F1S0S8-1" }, "locus": { "chromosome": "1", "start_pos": 272474374, "end_pos": 272454614, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006302.6", "url": "https://www.ensembl.org/id/ENSSSCT00000006302.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006140.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006140.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S0S8", "url": "https://www.uniprot.org/uniprotkb/F1S0S8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AGY8-1", "protein_name": "General transcription factor IIIC subunit 4", "gene_name": "Gtf3c4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEADQARVGPKADEPSSPAEEKDEGGGKEAAADAAPGPSASFRLMVTRREPAVKLQYAVSGLEPLSWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQVNLNRLQWVQLVDLTEIYGDRLYETSYRLSKNEAPEGNLGDFAEFQRRHSMQTPVRMEWSSICTTQQVKHNNECRDVSSVLLAVLFENGNIAVWQFQLPFVGKESISSCNTIESGISSPSVLFWWEYEHSNRKMSGLIVGSAFGPVKILPVNLKAVKGYFTLRQPVVLWKEMDKLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLPIVSITADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLAIITTEGMVNGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLHEALEKKIESSGVTYFWRFKLFLLRILYQSMQKSPSEALWKPTHEDSKILLVDSPGMGDGEDEQQEEGTSKQGTKAGLQEKSKEGGDTEETPEDSLTAVGDTGGREPIEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEDYDDRTAQVLIGHISKKMNKQTFPERCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPVPEDPDWIKRLLQSPCPFCDSPVF", "length": 818 }, "evidence": [ { "id": "F1S0S8", "url": "https://omabrowser.org/oma/group/F1S0S8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IFQ2-1", "protein_name": "General transcription factor 3C polypeptide 4", "gene_name": "Gtf3c4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSEADQAPVGPTAEEPSPSPEEEGEGGGKEPATEAAPGPSAAFRLMVTRREPAVKLQYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQVNLNRLQWVQLVDLTEIYGERLYETSYRLSKNEGPGGNLGDFAEFQRRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESISSCNTIESGISSPSVLFWWEYEHNNRKMSGLIVGSAFGPVKILPVNLKAVKGYFTLRQPVVLWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLHEALEKKIESSGVTYFWRFKLFLLRILYQSMQKSPSEALWKPTHEDSKILLVDSPGMGDGEDEQQEEGTSKQGTKAGLQERSKEGDTEEPPEDSLTAMGDTGGREPIEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEEYDDRTARVLIGHISKKMNKQTFPEHCSLCKEVLPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF", "length": 817 }, "evidence": [ { "id": "F1S0S8", "url": "https://omabrowser.org/oma/group/F1S0S8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BMQ2-1", "protein_name": "General transcription factor 3C polypeptide 4", "gene_name": "Gtf3c4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEADQALVGPKADEPSPPAEEKDEGGGKEAAADAAPGPSASFRLMVTRREPAVKLQYAVSGLEPLSWSEDHRVSVSTARSVAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFASSKDPTISQTFMLDRMFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTVQVNLNRLQWVQLVDLTEIYGDRLYETSYRLSKNEAPEGNLGDFAEFQRRHSMQTPVRMEWSSICTTQQVKHNNECRDVSSVLLAVLFENGNIAVWQFQLPFVGKESISSCNTIESGISSPSVLFWWEYEHNNRKMSGLIVGSAFGPVKILPVNLKAVKGYFTLRQPVVLWKEMDKLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLPIVSITADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLAIITTEGMMNGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLHEALEKKIESSGVTYFWRFKLFLLRILYQSMQKSPSEALWKPTHEDSKILLVDSPGMGDGEDEQQEEGTSKQGTKAGLQEKSKEGDTEETPEDSLTAGGDTGGREPVEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEDYDDRTAQVLIGHISKKMNKQTFPERCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPVPEDPDWIKRLLQSPCPFCDSPVF", "length": 817 }, "evidence": [ { "id": "F1S0S8", "url": "https://omabrowser.org/oma/group/F1S0S8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKN8-1", "protein_name": "General transcription factor 3C polypeptide 4", "gene_name": "GTF3C4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKLQYAVSGLEPLAWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFAASKDPTVSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTIQANLNRLQWVQLVDLTEIYGERLYETSYRLSKNEAPEGNLGDFAEFQRRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLFENGNIAVWQFQLPFVGKESISSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAVKGYFTLRQPVILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTGLHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLAIITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLQEALEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPTHEDSKILLVDSPGMGNADDEQQEEGTSSKQVVKQGLQERSKEGDVEEPTDDSLPTTGDAGGREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTWITENTSIPTRGLCNFLMSDEEYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIWLRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF", "length": 822 }, "evidence": [ { "id": "F1S0S8", "url": "https://omabrowser.org/oma/group/F1S0S8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S0T3-1", "uniprot_ac": "F1S0T3", "uniprot_id": "F1S0T3_PIG", "mass": { "chemical_mass": 16880.0, "monoisotopic_mass": 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"https://www.uniprot.org/uniprotkb/F1S0T3", "locus": { "chromosome": "16", "start_pos": 74302047, "end_pos": 74288049, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017098", "url": "https://www.ensembl.org/id/ENSSSCG00000017098" } ] } } ], "crossref": [ { "id": "F1S0T3", "url": "https://alphafold.ebi.ac.uk/entry/F1S0T3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017098", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017098", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RKNGIAC", "url": "https://omabrowser.org/oma/group/RKNGIAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S0T3", "url": "https://www.orthodb.org/?gene=F1S0T3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34444:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34444:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15074", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15074", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S0T3", "url": "https://www.uniprot.org/uniprotkb/F1S0T3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0T3-1", "url": "https://www.uniprot.org/uniprotkb/F1S0T3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDDDEEVTAATLRGKPRPVPISALSAFSYVPPRRQDPKEHSYYYRQGRAGVISLYDCVLKRNPGYNQKLHRDDREHAKSLGLHVNEEERERPVGVLTSSVYGWRIHQPVEPPNRDHRRAGHLKADFYRKNDIPSLKEPGFGHVSPA", "length": 147, "header": "tr|F1S0T3-1|F1S0T3_PIG Isoform 1 of Cilia and flagella associated protein 90 OS=Sus scrofa OX=9823 GN=CFAP90 PE=4 SV=2 CANONICAL=F1S0T3-1" }, "isoforms": [ { "isoform_ac": "F1S0T3-1", "url": "https://www.uniprot.org/uniprotkb/F1S0T3/entry", "sequence": { "sequence": "MEDDDEEVTAATLRGKPRPVPISALSAFSYVPPRRQDPKEHSYYYRQGRAGVISLYDCVLKRNPGYNQKLHRDDREHAKSLGLHVNEEERERPVGVLTSSVYGWRIHQPVEPPNRDHRRAGHLKADFYRKNDIPSLKEPGFGHVSPA", "length": 147, "header": "tr|F1S0T3-1|F1S0T3_PIG Isoform 1 of Cilia and flagella associated protein 90 OS=Sus scrofa OX=9823 GN=CFAP90 PE=4 SV=2 CANONICAL=F1S0T3-1" }, "locus": { "chromosome": "16", "start_pos": 74301855, "end_pos": 74288133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018616.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018616.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018115.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018115.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S0T3", "url": "https://www.uniprot.org/uniprotkb/F1S0T3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A2R8RPL3-1", "protein_name": "Cilia- and flagella-associated protein 90", "gene_name": "cfap90", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEVLSEAKSKPLSTLSVFSFIPPRRTEPKEMRYFNCSIKAPERSLYDCLHQSIEGFDNKLHRDDRKHAKARGLDIFSEESSRPAPVLCSSVYGRFSPLHYDSSRSFARVAHIRSDFYNKNGITWSVEEGYGSVTPV", "length": 136 }, "evidence": [ { "id": "F1S0T3", "url": "https://omabrowser.org/oma/group/F1S0T3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A3Q1LU45-1", "protein_name": "Cilia and flagella associated protein 90", "gene_name": "CFAP90", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEDDEEEITAAALRGKPRPLPISALSAFSYIPPRRQDPKEHSYYYRQGWTGIISLYDCVFKRDPGYNQKLHRDDREHAKSLGLRINEEECERPVGVLSSSVYGRRIDQPVEPLNRDHGRAGHVKADFYRKNDITSIKAPGFGHISPA", "length": 147 }, "evidence": [ { "id": "F1S0T3", "url": "https://omabrowser.org/oma/group/F1S0T3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0X8V5-1", "protein_name": "Cilia and flagella associated protein 90", "gene_name": "C5orf49", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASPATAGAGEQGGDVEDGGSGLGRRRPPPVSSLSAFSYIPPRREGPAELSYFHRVAQTGGVSTYDSIFKRPEGYNEKLHRCDREHARSRGLNVNDEHIFRVLQAIAIHLNFRNPLQGSRCHNIRHNFQAAKKLKNLLRRMEAFQRPEEHLFIHPALTGLSAAPSIATEMHGFIHRKGLHPQLHVVLPTKHIPTFVLGTQHPHGCGTIALGLSPFARGAQTFA", "length": 223 }, "evidence": [ { "id": "F1S0T3", "url": "https://omabrowser.org/oma/group/F1S0T3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4QMS7-1", "protein_name": "Cilia- and flagella-associated protein 90", "gene_name": "CFAP90", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDEEETTASTLRGKPRPPPVSAQSAFSYIPPRRLDPKEHSYYYRPARTGIISLYDCIFKRRLDYDQKLHRDDREHAKSLGLHVNEEEQERPVGVLTSSVYGKRINQPIEPLNRDFGRANHVQADFYRKNDIPSLKEPGFGHIAPS", "length": 147 }, "evidence": [ { "id": "F1S0T3", "url": "https://omabrowser.org/oma/group/F1S0T3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "M0R5R5-1", "protein_name": "Cilia and flagella associated protein 90", "gene_name": "Cfap90", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "KELEGRVKERHKVDAENKAQLLGNDRAQTPGGTQKPDGGTRQEGAASDGPRWREGEGGKGGRGGRRRRGRRGGGGGNYRRNPAGQTPTFAHLSDISFQLHPSTASGPQGAQLLQSRGPGIVSLYDCVFKRRLDYNQKLHRDDREHAKNLGLHINEEEQERTVPVLMSSVYGKRINQPIEPLNRDYGRVNHVRTDFYRKNDIPSIKTPGFGHITPA", "length": 215 }, "evidence": [ { "id": "F1S0T3", "url": "https://omabrowser.org/oma/group/F1S0T3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DAR0-1", "protein_name": "Cilia- and flagella-associated protein 90", "gene_name": "Cfap90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEELAKKERRAMDPGGLKKEGKVEEEAGKEEGREEEGGEEEEVTSETLRGKPRPLPISALPAFSYIPPRHQGPKERSYFSREGQTGIVSLYDCVFKRRLDYNQKLHRDDREHAKNLGLHINEEEQERTVPVLMSSVYGKRINQPIEPLNRDYGHVSHVKTDFYRKNEIPSIKGPGFGHINPA", "length": 182 }, "evidence": [ { "id": "F1S0T3", "url": "https://omabrowser.org/oma/group/F1S0T3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1S0T3", "url": "https://www.uniprot.org/uniprotkb/F1S0T3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1S0T3", "url": "https://www.uniprot.org/uniprotkb/F1S0T3" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1S0T3", "url": 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"id": "PTHR14969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14969:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14969:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926047", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926047", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S0W6", "url": "https://www.uniprot.org/uniprotkb/F1S0W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S0W6-1", "url": "https://www.uniprot.org/uniprotkb/F1S0W6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPASQSRARARDRNNILNRAEFLSLNQPPKGAPEPRGSARKASGPSAQPPPPGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPFESSPSLLDYLTMDVYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHITDVLSGFAIGYFQFRLVELVWMSSNTCQMLISAW", "length": 271, "header": "tr|F1S0W6-1|F1S0W6_PIG Isoform 1 of Phospholipid phosphatase 7 (inactive) OS=Sus scrofa OX=9823 GN=PLPP7 PE=4 SV=4 CANONICAL=F1S0W6-1" }, "isoforms": [ { "isoform_ac": "F1S0W6-1", "url": "https://www.uniprot.org/uniprotkb/F1S0W6/entry", "sequence": { "sequence": "MPASQSRARARDRNNILNRAEFLSLNQPPKGAPEPRGSARKASGPSAQPPPPGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPFESSPSLLDYLTMDVYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHITDVLSGFAIGYFQFRLVELVWMSSNTCQMLISAW", "length": 271, "header": "tr|F1S0W6-1|F1S0W6_PIG Isoform 1 of Phospholipid phosphatase 7 (inactive) OS=Sus scrofa OX=9823 GN=PLPP7 PE=4 SV=4 CANONICAL=F1S0W6-1" }, "locus": { "chromosome": "1", "start_pos": 271282722, "end_pos": 271269413, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006283.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006283.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006121.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006121.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S0W6", "url": "https://www.uniprot.org/uniprotkb/F1S0W6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165958", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165958", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M220-1", "protein_name": "Phospholipid phosphatase 7 (inactive)", "gene_name": "PLPP7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPASQSRARARDRSNVLNRAEFLSLNQTPKGAPEPRSSGRKASGPSTQPPAPGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPFESSPSLLDYLTMDVYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHITDVLFGFAIGYFQFRLVELVWMSSNTCQMLISA", "length": 270 }, "evidence": [ { "id": "F1S0W6", "url": "https://omabrowser.org/oma/group/F1S0W6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IDJ5-1", "protein_name": "Inactive phospholipid phosphatase 7", "gene_name": "Plpp7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPASQSRARARDRNNVLNRAEFLSLNQPPKGTQEPRSSGRKASGPSTQPPPSGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVRSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPYETSPGLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWAFCVGLSRVMIGRHHITDVISGFIIGYFQFRLVELVWMSSNTCQMLISAW", "length": 271 }, "evidence": [ { "id": "F1S0W6", "url": "https://omabrowser.org/oma/group/F1S0W6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5FVJ3-1", "protein_name": "Inactive phospholipid phosphatase 7", "gene_name": "Plpp7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVSQSRARARDRNNVLNRAEFLSLNQPPKGTQEPRSSGRKASGPSTQPPPSSDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITSHGIPWIGGTILCLVRSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPYETSPGLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWAFCVGLSRVMIGRHHITDVISGFIIGYFQFRLVELVWMSSNTCQMLISAW", "length": 271 }, "evidence": [ { "id": "F1S0W6", "url": "https://omabrowser.org/oma/group/F1S0W6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NBV4-1", "protein_name": "Inactive phospholipid phosphatase 7", "gene_name": "PLPP7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEPRSSGRKASGPSAQPPPAGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPYETSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHVTDVLSGFVIGYLQFRLVELVWMPSSTCQMLISAW", "length": 271 }, "evidence": [ { "id": "F1S0W6", "url": "https://omabrowser.org/oma/group/F1S0W6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91WB2-1", "protein_name": "Inactive phospholipid phosphatase 7", "gene_name": "Plpp7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPASQSRARARDRNNVLNRAEFLSLNQPPKGTQEPRSSGRKASGPSTQPPPSSDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVRSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPYETSPGLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWAFCVGLSRVMIGRHHITDVISGFIIGYFQFRLVELVWMSSNTCQMLISAW", "length": 271 }, "evidence": [ { "id": "F1S0W6", "url": "https://omabrowser.org/oma/group/F1S0W6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1S0W6", "url": "https://www.uniprot.org/uniprotkb/F1S0W6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S0W6", "url": "https://www.uniprot.org/uniprotkb/F1S0W6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingosine-1-phosphate phosphatase activity", "id": "GO:0042392", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042392", "evidence": [ { "database": "UniProtKB", "id": "F1S0W6", "url": "https://www.uniprot.org/uniprotkb/F1S0W6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S0W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S0W6" }, { "id": "SM00014", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatidic acid phosphatase type 2/haloperoxidase", "eco_id": "ECO_0000259", "start_pos": 143, "end_pos": 255, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S119-1", "uniprot_ac": "F1S119", "uniprot_id": "F1S119_PIG", "mass": { "chemical_mass": 76778.0, "monoisotopic_mass": 76778.0 }, "refseq": { "ac": "XP_020957370", "name": "glutathione S-transferase C-terminal domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957370" }, "gene_names": [ { "name": "GSTCD", "type": "recommended", "evidence": [ { "id": "F1S119", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S119" } ] }, { "name": "GSTCD", "type": "synonym", "evidence": [ { "id": "XP_020957370", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957370" } ] } ], "protein_names": [ { "name": "Glutathione S-transferase C-terminal domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1S119", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S119/entry#names_and_taxonomy" } ] }, { "name": "glutathione S-transferase C-terminal domain-containing protein", "type": "synonym", "evidence": [ { "id": "XP_020957370", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957370" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S119", "url": "https://www.uniprot.org/uniprotkb/F1S119" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GSTCD", "url": "https://www.uniprot.org/uniprotkb/F1S119", "locus": { "chromosome": "8", "start_pos": 115902994, "end_pos": 116031862, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023548", "url": "https://www.ensembl.org/id/ENSSSCG00000023548" } ] } } ], "crossref": [ { "id": "F1S119", "url": "https://alphafold.ebi.ac.uk/entry/F1S119", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023548", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023548", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624822", "url": 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"id": "F1S119", "url": "https://www.orthodb.org/?gene=F1S119", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13369:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13369:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020957370", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957370", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S119", "url": "https://www.uniprot.org/uniprotkb/F1S119", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S119-1", "url": "https://www.uniprot.org/uniprotkb/F1S119-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNDGRCCCFPGAASVVFFPAAWSCERSAGEDFLKRPRETRLGRGGNALAASVDTFTHPPCLAAPLRPGSQRRKRMKGIKKSLTEEYLYLELSQQIGGYIFPLHTSVTLFLLSYCDCKIFKVCLVLTTESTDVSLLRSVLSKDVEIHITSRQELPPVVQNCRLPAVVERPDSFCRAGLAVVLRHIIQKSYESDPSKKEILELLGFKKTCLKACAEVSQWTRLCELTIPVAIENFLRESSDQPPTIPAEILELEKKLSEPVRVHNDDKLRRQKLKQQKAAGAGPSLAKEKTKNKVHRPETSEAVDSSSASLELQVALSKLLVQEESAPANREPSHIRKTKASDLPPLEHVFAEGLYFTLADIVLLPCIHHFLVIICKKLPEKLVEFPLLAAWYRRIQEVPRVKTAASQCGIQFLHLPELQTSSNEWHPNLDEVPCVEEQNDSSFIGGPRPTMTKLMEKGIEVMFSPHPCPTWTLDWNTLPAAVSPKEGKMSSDRALRKQQQLNNLVYVVTNQAKPGDRIVDFCSGGGHVGIVLAHMLPSCQVILIENKELSLIRAKKRSDELGLSNIWFIQANMEYFTGIFNIGVALHACGVATDMVIEHCIKTRASFVTCPCCYGFIQNTSKFKFPKSEQFKKTLSYKEHMILCRFADQTAVQLPPQRRLIGKQCMCLVDWIEQELQKNVATLFK", "length": 684, "header": "tr|F1S119-1|F1S119_PIG Isoform 1 of Glutathione S-transferase C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=GSTCD PE=3 SV=3 CANONICAL=F1S119-1" }, "isoforms": [ { "isoform_ac": "F1S119-1", "url": "https://www.uniprot.org/uniprotkb/F1S119/entry", "sequence": { "sequence": "MNDGRCCCFPGAASVVFFPAAWSCERSAGEDFLKRPRETRLGRGGNALAASVDTFTHPPCLAAPLRPGSQRRKRMKGIKKSLTEEYLYLELSQQIGGYIFPLHTSVTLFLLSYCDCKIFKVCLVLTTESTDVSLLRSVLSKDVEIHITSRQELPPVVQNCRLPAVVERPDSFCRAGLAVVLRHIIQKSYESDPSKKEILELLGFKKTCLKACAEVSQWTRLCELTIPVAIENFLRESSDQPPTIPAEILELEKKLSEPVRVHNDDKLRRQKLKQQKAAGAGPSLAKEKTKNKVHRPETSEAVDSSSASLELQVALSKLLVQEESAPANREPSHIRKTKASDLPPLEHVFAEGLYFTLADIVLLPCIHHFLVIICKKLPEKLVEFPLLAAWYRRIQEVPRVKTAASQCGIQFLHLPELQTSSNEWHPNLDEVPCVEEQNDSSFIGGPRPTMTKLMEKGIEVMFSPHPCPTWTLDWNTLPAAVSPKEGKMSSDRALRKQQQLNNLVYVVTNQAKPGDRIVDFCSGGGHVGIVLAHMLPSCQVILIENKELSLIRAKKRSDELGLSNIWFIQANMEYFTGIFNIGVALHACGVATDMVIEHCIKTRASFVTCPCCYGFIQNTSKFKFPKSEQFKKTLSYKEHMILCRFADQTAVQLPPQRRLIGKQCMCLVDWIEQELQKNVATLFK", "length": 684, "header": "tr|F1S119-1|F1S119_PIG Isoform 1 of Glutathione S-transferase C-terminal domain-containing protein OS=Sus scrofa OX=9823 GN=GSTCD PE=3 SV=3 CANONICAL=F1S119-1" }, "locus": { "chromosome": "8", "start_pos": 116031831, "end_pos": 115905707, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010025.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010025.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009762.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009762.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S119", "url": "https://www.uniprot.org/uniprotkb/F1S119" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624822", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624822", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AB77-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "Gstcd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKGIKENAVESLYLEYSHQIEGCIFPLHTSVTLFLLSYCECKVFNVYLVPTEEGADTSFLKEALPQDVEAQVLSKQALPPIVQSCCLPAVVNQPDTFCRAGLAVVLRHIIQKSYEAEPSRKEILELLGFKKTCLKACAEVSQWTRLCELTIPLAVENFLQESSDDPPTIPEEILELERKLSEPVRVHNDDKLRRQKLKQQKASSSEPPSGKGKAKTKVRAHKTPKDVAGSSKSLELKVAFSKLTVQEDAEATNREPSHIRKATASELPPLEHVFAEGLYFTLADIVLLPCVHHFLVMICKKFSEKLEQFPLLTSWYQRIQEVPKVKTAAFKCGICFLDLPELLTPESKEPVNSSDTASVDEQSDPLFVGGPRPTMTKLMEKGIEAMFSPHPCPAWTLDWSSLPAAVSPKEAASTTPLKIKELAAENTGNGKMSTDRALRKQQQLNNLAYLVLDRAKPGDRIVDFCSGGGHVGIVLAHVLPLCQVTLIENKEISLIRAKKRSDELGLSNIWFIQANMEYFTGVFDIGVALHACGVATDMVIQRCIQTRASFITCPCCYGFIQNTSKFNFPKSEKFKNTLSYKEHMLLCRFADQTAMQLPPQRRLIGKQCMCLVDLDRATAAEEQGYSVQVISMEPESCSPKNNMIVGVPV", "length": 649 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M1N6W6-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "gstcd", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKQTDPETHKESLYLEVCGANGAVSLPLHSSIVLFLLSYSECSSFHVCLVTDQADVLQSPSALVPAGLSVSALRRDELPGLVKMCRLPAALESDVGFCRAGLAVVLRHIIQRACQLMPDRRDVASLLGFKNTCLKACAEVSQWTRLCELEIPSAVEKHLQNPEDETNRLPPAIINLEKRLGEPVKVHNDDKIRRQKLQQQKKSDSQVKDAEKEPHPNVELSAALARLSTDAVCPPSSREHSDIRKVKSTDLPELEHVFAEGLYFTLTDVVLLPCIHQYLISLRTHSPSTLSHLPLLLRWYQRTQELSGVLRAAKDCGMVFLTLSAADPCLTQQDAPPQASEEPKPKQEPFIGGPRPTLTKLQENGIDAIYSAYPCPLRTVDWESLPAAVNPSEGKMSDSRALRKQQQLDNLLAMVLNQAQPGHTVVDFCSGGGHVGIVLAYMLPKCQVILVENKEESLIRARERSAQLTLTNIGFIQTNLDYFTGNFNIGVALHACGVATDMVLDRCLQARAGFVISPCCYGFIQNTLKFNFPKSARFAETLSYKEHMILCRFADQTAVSLPPERRSIGKRCMGLVDLDRSWAAEAHGYSVRVMTMIPKGCSPKNNMLVGEPTG", "length": 614 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XPU6-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "GSTCD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWQCWSLQFSEELQLRRKMKDSVPEEHLYLGFSHQYQDSIFPLHTSISLFLLSYCDCKSFKIFLVPTNENANDQFVTKNLLGDLEIHLISKCQLPTVVQSCCLPAVVTKDGKFCRAGLSVVLRHIIQKTFEADPSKKNVLELLGFKKTCLKACAEVSQWTRLCEISIPLAVEGFLTASPEHCQTIPADILQLERKLGEPVRVHNDDKIRRQKLQQQKAGAKAAASLLEEEATEEGKAVEVHEHPLPSLELSVAFSKLRVQEVSHAVNREAPLIRRTKTSDLPPLDHVFAEGLYFTLADIVLLPCIHQFLVYSKKQGKDLVNLPLISSWYQRVQQVPGVKKAADKCNMQLLQLPELIPSPEEHREDFFPVPNDFEEEHEDSQFIGGPRPTMTKLMERGIEAKFSPHPCPDWTIDWTILPAAVNPGEGKMSRDRALRKQQQLNNLVAAVKKLAKPGDMIVDFCSGGGHVGIVLAHMMPSCQVVLIENKELSLMRAKDRSDELGLSNISFIQANLDYFNGTFNIGVALHACGVATDMVIEHCIKARAAFVISPCCYGFIQNTMKFKYPRSHQFKEILSYKEHMILCRFADQTAVHLPPERKLIGKQCMGLVDLDRAWAAEECNYSVQVTSMEPESCSPKNNMFVGTPV", "length": 645 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A5PKL6-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "GSTCD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKGIKKSLTEEYLYLDFSHQKEGCIFPLHTSVTLFLLSYCDCTVFKVFLVLPGESTGISLLKNVPSEGVEIQTISRQELPPIVQSCCLPAVVERPDNFCRAGLAVVLRHIIQKSYEADPSKKEILELLGFKKTCLKACAEVSQWTRLCELTVPLAVENFLKESFDQPPTIPAAILELEKKLSEPVRVHNDDKLRRQKLKQQKAAGVGPSLAKEKTKSKGHRQETSEEGDSSSASLELKVAFSKLTIHKEPASANREPSYVRKAKASDLPPLDHVFAEGLYFTLADIVLLPCIHHFLVIICRKLSGKLVEFPLVAAWYQRIQEVPRVQTAASQCGIQFISLPELQTTSSQQPPNLDEAPSAEEQNDPSFIGGPRPTMTKLMEKGIEVMFSPHPCPTWTLDWDTLPAAVSPKEGKMSSDRALRKQQQLNNLVYMVTNQAKPGDRIVDFCSGGGHVGIVLAHVLPSCQVILIENKELSLIRAKKRSDELGLSNIWFIQANMEYFTGMFNIGVALHACGVATDMVIEHCLKTRASFVTCPCCYGFIQNTSKVNFPKSELFKKTLSYKEHMILCRFADQTAVQLPPQRRLIGKQCMCLVDLDRARAAEEHGFSVQVISMEPESCSPKNNMIVGVPI", "length": 631 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RL51-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "Gstcd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGIKKSPTEESLYLEYSHQTEGCIFPLHTSVTLFLLSYCECKVFNVCLVLTEESTDTSDTSFLKEALPQDLEIQVISKQALPPIVQNCCLPAVVDQPDVFCRAGLAVVLRHIIQKSYEAEPSRKEILELLGFKKTCLKACAEVSQWTRLCELTIPLAVENFLQESSEHPPTIPEEILELERKLSEPVRVHNDDKLRRQKLKQQKAAGSEPPSGKGKAKSKASAQKTPKDLAAPSKSLELKVAFSKLTVQEDAAASNREPSHIRKAKAADLPPLEHVFAEGLYFTLADIVLLPCIHHFLVIICKKFSEKLEQFPLLTSWYQRIQEVPKVKTAASKCGIYFLYLPELLNSARKQPVNSDEVAAVDEQSDPLFIGGPRPTMTKLMEKGIEAMFSPHPCPAWTLDWSSLPAAVSPKEGKMSTDRALRKQQQLNNLVYLVLNQAKPGDRIVDFCSGGGHVGIVLAHMLPSCQVTLIENKELSLIRAKKRSDELGLSNIWFIQANMEYFTGMFNIGVALHACGVATDMVIEHCIQTRASFITCPCCYGFIQNTSKFNFPKSEKFKKTLSYKEHMLLCRFADQTAVQLPPERRLIGKQCMGLVDLDRAAAAGEHGYSVQVISMEPESCSPKNNMIVGVPL", "length": 634 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NEC7-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein", "gene_name": "GSTCD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKAIKKSLTEEEYLYLDFSHQTEGCIFPLHTSVTLFLLSYCDCKIFKICLVVTKEVSRDSSLLRDDLIQDVEIQIISRQELPPIVQNCCLPAVVERSDNFCRAGLAVVLRHIIQKSYEADPLKKELLELLGFKKTCLKACAEVSQWTRLCELTIPLAIENFLRESSDQPPTIPVEILQLEKKLSEPVRVHNDDKLRRQKLKQQKADGVGPPLTKGKAKSKVHTQETSEGLDSSSKSLELKVAFSKLTVQEEPATTNREPSHIRKAKASDLPPLEHVFAEGLYFTLADIVLLPCIHHFLVIISRKFSEKLVEFPLLASWYQRIQEVPGVKTAASKCGIQFLHLPKLLTTSTEQHPNLCEVPGVEEQSDPLFIGGPRPTMAKLMEKGIEVMFSPHPCPTWTLDWNVLPAAVSPKEGKMSSDRALRKQQQLNNLVYVVTNQAKPGDRIVDFCSGGGHVGIVLAHMLPSCQVTLIENKELSLIRAKKRSDELGLSNIWFIQANMEYFTGMFNIGVALHACGVATDMVIEHCIKTRASFVTCPCCYGFIQNTSKFNFPKSEQFKKTLSYKEHMILCRFADQTAVQLPPQRRLIGKQCMCLVDLDRARAAEECGYSVQVISMEPESCSPKNNMIVGVPI", "length": 633 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VJ34-1", "protein_name": "Glutathione S-transferase C-terminal domain-containing protein homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDQLYLEIEISTQKETTIYTGVSSFLALFTYKFLKDPKNVRVNFVSTKIEGGKIALRSSQLKKELTDRHITCRDAASLPAIQDLKLPIYEKDGNTFIAGTCAVCRELIARQPNEELKKLLGFKGSCLLAPSEASIWTKFCEVDLVAVVSKLHSGQVLEFVPQEVVRFEQHMNEPVRMHNIYKQAREQANQTENGGKVKRRERVQIKCTTPKEELLIEHRFAEGISFTIADIILYPLLRIVFQHCGQMLPHFPLTSTWFSEIDSFGDKCARVLRDLYVPQAIKTPPGELGIPDCEATSLYKADPKRYKPRNRIYTSQLELEAALSKLSSLQLQFNSDSEHTYGQQLIDWEQIEPTHAKSSALPKERLERKRQQLENLANAVVSLAQPGDRIVDFCSGTGHLAILLALKLPNCTIIVMENKAFSLLQAQKRSNELGLTNCVFYQCNIDYFVGGFKIGASLHACGTATDIVLQQCRRAKAHFVCCPCCYGSLQPMPHISYPLSKAFQKVLDTKDYLYIAHSADQAHEMGTTNCKPETTLQGLHCMSVVDTDRLLQAEEAGYQVILTRLKPEQCTPKNHLLVGRFVKQN", "length": 585 }, "evidence": [ { "id": "F1S119", "url": "https://omabrowser.org/oma/group/F1S119/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1S119", "url": "https://www.uniprot.org/uniprotkb/F1S119" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S119", "url": "https://www.uniprot.org/uniprotkb/F1S119" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 618, "end_pos": 620, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S119-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 684, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S119-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S119" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S119", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S119" }, { "id": "PS50405", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50405" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GST C-terminal", "eco_id": "ECO_0000259", "start_pos": 208, "end_pos": 421, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 438, "end_pos": 440 }, { "start_pos": 618, "end_pos": 620 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { 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"https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16842", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155269", "url": "https://www.ncbi.nlm.nih.gov/gene/100155269", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IEHITWS", "url": "https://omabrowser.org/oma/group/IEHITWS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S173", "url": "https://www.orthodb.org/?gene=F1S173", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125709", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S173-1", "url": "https://www.uniprot.org/uniprotkb/F1S173-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQB5", "url": "https://www.uniprot.org/uniprotkb/K7GQB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQB5-1", "url": "https://www.uniprot.org/uniprotkb/K7GQB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPRRRIYGRALQPSSSKTLKSQPHILSLFLWIPLLFLLMGLGASHSTPTVVRGLLGGSVILPLNISVDMEIEHIAWNDPQNALALVTPRSDIIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSYKAQINQKNSEVTINEEFFLHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQYHWTLRDPRAVKSLDGSTLTISWLPCDPDLPYICTAKNPVSQSSSRPVYAWQFCTGPGASRGEPTGETVMGILGESITLSLALQDSQHIENVVWMFNTSIISKEQGEAATANQLTEFKDPHKNTLWVSNQDYSLKISQLRMEDAGPYHAYVCSNTRVAITKHFNLLVYGRLKKPKVTWSLRHTKDGICRVNLTCSVEDSGHNVTYRWTPLQKGAVRSQGGPHLSVSWRSGEKHPNFTCTASNPVSNNSWQFLSGNICPGPERRSTKLWVWLSLIIFTLLFFGISGWCLWKKKRCSAPVSSSSQEEAPADTPGYEKLDTFPKAVRQQPRHSSDSSSDSNGTTEEDEDRTEMYQPEDGRDQMCDLDSEDQAEYELVTPGGTAPSFVVEGETVYTQVFLDLQGKTPVPQKKESSTTIYCSIQKPQKMVPPSPQNDLESSEVPTYENVT", "length": 631, "header": "tr|F1S173-1|F1S173_PIG Isoform 1 of Lymphocyte antigen 9 OS=Sus scrofa OX=9823 GN=LY9 PE=4 SV=3 CANONICAL=F1S173-1" }, "isoforms": [ { "isoform_ac": "F1S173-1", "url": "https://www.uniprot.org/uniprotkb/F1S173/entry", "sequence": { "sequence": "MASPRRRIYGRALQPSSSKTLKSQPHILSLFLWIPLLFLLMGLGASHSTPTVVRGLLGGSVILPLNISVDMEIEHIAWNDPQNALALVTPRSDIIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSYKAQINQKNSEVTINEEFFLHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQYHWTLRDPRAVKSLDGSTLTISWLPCDPDLPYICTAKNPVSQSSSRPVYAWQFCTGPGASRGEPTGETVMGILGESITLSLALQDSQHIENVVWMFNTSIISKEQGEAATANQLTEFKDPHKNTLWVSNQDYSLKISQLRMEDAGPYHAYVCSNTRVAITKHFNLLVYGRLKKPKVTWSLRHTKDGICRVNLTCSVEDSGHNVTYRWTPLQKGAVRSQGGPHLSVSWRSGEKHPNFTCTASNPVSNNSWQFLSGNICPGPERRSTKLWVWLSLIIFTLLFFGISGWCLWKKKRCSAPVSSSSQEEAPADTPGYEKLDTFPKAVRQQPRHSSDSSSDSNGTTEEDEDRTEMYQPEDGRDQMCDLDSEDQAEYELVTPGGTAPSFVVEGETVYTQVFLDLQGKTPVPQKKESSTTIYCSIQKPQKMVPPSPQNDLESSEVPTYENVT", "length": 631, "header": "tr|F1S173-1|F1S173_PIG Isoform 1 of Lymphocyte antigen 9 OS=Sus scrofa OX=9823 GN=LY9 PE=4 SV=3 CANONICAL=F1S173-1" }, "locus": { "chromosome": "4", "start_pos": 89728750, "end_pos": 89702657, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006986.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006986.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006796.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006796.3" } ] } }, { "isoform_ac": "K7GQB5-1", "url": "https://www.uniprot.org/uniprotkb/K7GQB5/entry", "sequence": { "sequence": "MASPRRRIYGRALQPSSSKTLKSQPHILSLFLWIPLLFLLMGLGASHSTPTVVRGLLGGSVILPLNISVDMEIEHIAWNDPQNALALVTPRSDIIIMDRSYQGRINIFAQNNSLSINKLTWKDAGSYKAQINQKNSEVTINEEFFLHIYEQLQEPQVTMKSVNMSENASCDFTLLCSVEGTGEDVQYHWTLRDPRAVKSLDGSTLTISWLPCDPDLPYICTAKNPVSQSSSRPVYAWQFCTGPGASRGEPTGETVMGILGESITLSLALQDSQHIENVVWMFNTSIISKEQGEAATANQLTEFKDPHKNTLWVSNQDYSLKISQLRMEDAGPYHAYVCSNTRVAITKHFNLLVYGPERRSTKLWVWLSLIIFTLLFFGISGWCLWKKKRCSAPVSSSSQEEAPADTPGYEKLDTFPKAVRQQPRHSSDSSSDSNGTTEEDEDRTEMYQPEDGRDQMCDLDSEDQAEYELVTPGGTAPSFVVEGETVYTQVFLDLQGKTPVPQKKESSTTIYCSIQKPQKMVPPSPQNDLESSEVPTYENVT", "length": 541, "header": "tr|K7GQB5-1|F1S173_PIG Computationally mapped isoform of Lymphocyte antigen 9 OS=Sus scrofa OX=9823 GN=LY9 PE=4 SV=2 CANONICAL=F1S173-1" }, "locus": { "chromosome": "4", "start_pos": 89728750, "end_pos": 89702657, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036000.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036000.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030083.2", "url": "https://www.ensembl.org/id/ENSSSCP00000030083.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GQB5", "url": "https://www.uniprot.org/uniprotkb/K7GQB5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MKN9-1", "protein_name": "Lymphocyte antigen 9", "gene_name": "LY9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASPRRHTDDWAPQPFSNKPPKSQPHVFSPYLWTLLLFLLLGQGASEKDSASTVVKAIVGGSVILSLNISVDAEIEQITWSGPKDALVLAFPSGEILFLDKSYKGRINIPKNNSLSINKLTLKDAGSYKARINQKGSEDFNERFILYIYEQLQEPQVTIQSVNVSENASCTITLVCSVEGAGGDIQYKWTSRDPHASESWGHPTLTISWLPCDADLPYTCTAKNPVSQSSSHPVHVSQFCTDLGASRGGPMGKTVLGVLGESITLSLALLDSQHIDNVVWIFNTSIISKEWREEATANQLIEFKDPDQNTVWVSSQDYSLKIVQLKMEHAGLYQAYLCSNARVASVKHINLRIYQRLKKPNVMRSLRLTKDSICKVSLTCSVEDSVHNVTYGWTPLPKGAVISQGGAHLSMSWRSGEKHPNFTCTASNPVSNSSQQFLSRDLCPGPERSTEFWIGLSLVVLFILLSLGISGWCFWKQQRQWSAPAFSSSQAETSVDTPGYEKLDTFPKTARHASDSSSDSNGTTEEDEERTGMHQPVNGRDQVCDSVTREDAGLDSDSEGQPEYDQVTPDNMAPALAVEGETVYTQVFLHLPGKTPVPQKKENSATVYCSIQKPQKVVPPSQQNDLKSPEIPTYENVP", "length": 638 }, "evidence": [ { "id": "F1S173", "url": "https://omabrowser.org/oma/group/F1S173/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6GJS8-1", "protein_name": "Lymphocyte antigen 9", "gene_name": "Ly9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLKRYWCERALDAFSEKTRKSQQQIFSPILWIPLLFLLMGLGASGKETPPRVISGILGGSVTFPLNISINAEIELITWTYLSKTLVLAITSRSGITILLKEYSGRLNISQDGYSLCMSNLTKSDSGSYQAQIIQKNVDHTVRNEFILHIYEQLQEPQVTVKSMTSSENDSCTVTLICTVNGSKDGVQYSWIQKDTHNKTSHESHILRVSPSACDPDLPYTCTARNPVSQNSSQPVRVRQFCTGTSRKKTTGKTVIGILGEPVTLSLEFPASEETKNVVWVFNTSVISQEPKGAATVDPHRHKSKSSEERRLRISDQDSSLKISQLKMEDTGPYHAYVCSETSRGPSVRHFTLLVYQRLKKPNVTQSPVHMTNGICEVVLTCSVEGGEKDVRYTWMPLQKETVMSQGKSHLNVSWKIGERLPNFTCTTHNPVSNSSRQLSSGSLCSGPERNKRLWILLLLGLFLGMLIGGCFILKKRKLCSSLAIRNSQAKVPAEIPETPAGHIGFSVLSQQYEKLDMPAKTIRHHSTSTSDTSSESSATTEEDDEKTRMHSTVNGRSQVYDLFTQEDIAHDLASEGQAEYEAVSPDDKVAKSMDEEDTAYTQESLIVQGENPLPQKKEGSNTIYCSLQKHKTMVQTPQQDTESPETPTYENFT", "length": 655 }, "evidence": [ { "id": "F1S173", "url": "https://omabrowser.org/oma/group/F1S173/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01965-1", "protein_name": "T-lymphocyte surface antigen Ly-9", "gene_name": "Ly9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADLKRYWCDWALGPLSENPRMSQQQIFSPILWIPLLFLLMGLGASGKETPPTVISGMLGGSVTFSLNISKDAEIEHIIWNCPPKALALVFYKKDITILDKGYNGRLKVSEDGYSLYMSNLTKSDSGSYHAQINQKNVILTTNKEFTLHIYEKLQKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVSQSVCDPDLPYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRATKNVVWVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPYHAYVCSEASRDPSVRHFTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNNVTYTWMPLQNKAVMSQGKSHLNVSWESGEHLPNFTCTAHNPVSNSSSQFSSGTICSGPERNKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQAEVPAEIPETPTGHGQFSVLSQRYEKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRMHSTANSRNQVYDLVTHQDIAHALAYEGQVEYEAITPYDKVDGSMDEEDMAYIQVSLNVQGETPLPQKKEDSNTIYCSVQKPKKTAQTPQQDAESPETPTYENFT", "length": 654 }, "evidence": [ { "id": "F1S173", "url": "https://omabrowser.org/oma/group/F1S173/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBG7-1", "protein_name": "T-lymphocyte surface antigen Ly-9", "gene_name": "LY9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVAPKSHTDDWAPGPFSSKPQRSQLQIFSSVLQTSLLFLLMGLRASGKDSAPTVVSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKENVTIMVKSYLGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVYEQLQEPQVTMKSVKVSENFSCNITLMCSVKGAEKSVLYSWTPREPHASESNGGSILTVSRTPCDPDLPYICTAQNPVSQRSSLPVHVGQFCTDPGASRGGTTGETVVGVLGEPVTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPLIKSRDPYKNRVWVSSQDCSLKISQLKIEDAGPYHAYVCSEASSVTSMTHVTLLIYRRLRKPKITWSLRHSEDGICRISLTCSVEDGGNTVMYTWTPLQKEAVVSQGESHLNVSWRSSENHPNLTCTASNPVSRSSHQFLSENICSGPERNTKLWIGLFLMVCLLCVGIFSWCIWKRKGRCSVPAFCSSQAEAPADTPEPTAGHTLYSVLSQGYEKLDTPLRPARQQPTPTSDSSSDSNLTTEEDEDRPEVHKPISGRYEVFDQVTQEGAGHDPAPEGQADYDPVTPYVTEVESVVGENTMYAQVFNLQGKTPVSQKEESSATIYCSIRKPQVVPPPQQNDLEIPESPTYENFT", "length": 655 }, "evidence": [ { "id": "F1S173", "url": "https://omabrowser.org/oma/group/F1S173/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of interleukin-17 production", "id": "GO:0032740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032740", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" }, { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" }, { "name": "T cell activation", "id": "GO:0042110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042110", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" }, { "name": "T-helper 17 cell lineage commitment", "id": "GO:0072540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072540", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1S173", "url": "https://www.uniprot.org/uniprotkb/F1S173" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 388, "end_pos": 390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 421, "end_pos": 423, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 524, "end_pos": 526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 629, "end_pos": 631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], 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"database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sperm axoneme assembly", "id": "GO:0007288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007288", "evidence": [ { "database": "UniProtKB", "id": "F1S1I7", "url": "https://www.uniprot.org/uniprotkb/F1S1I7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 2, "end_pos": 4 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S1I8-1", "uniprot_ac": "F1S1I8", "uniprot_id": "F1S1I8_PIG", "mass": { "chemical_mass": 66472.0, "monoisotopic_mass": 66472.0 }, "refseq": { "ac": "XP_003483023", "name": "MAGUK p55 subfamily member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483023" }, "gene_names": [ { "name": "MPP3", "type": "recommended", "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ] }, { "name": "MPP3", "type": "synonym", "evidence": [ { "id": "XP_003483023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483023" } ] } ], "protein_names": [ { "name": "MAGUK p55 subfamily member 3", "type": "recommended", "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8/entry#names_and_taxonomy" } ] }, { "name": "Discs large homolog 3", "type": "synonym", "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8/entry#names_and_taxonomy" } ] }, { "name": "MAGUK p55 subfamily member 3", "type": "synonym", "evidence": [ { "id": "XP_003483023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483023" } ] }, { "name": "Protein MPP3", "type": "synonym", "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Participates in cell spreading through the phosphoinositide-3-kinase (PI3K) pathway by connecting CADM1 to DLG1 and the regulatory subunit of phosphoinositide-3-kinase (PI3K). Stabilizes HTR2C at the plasma membrane and prevents its desensitization. May participates in the maintenance of adherens junctions.", "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8#function" }, { "database": "UniProtKB", "id": "ARBA00053289", "url": "https://www.uniprot.org/uniprotkb/ARBA00053289#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MPP3", "url": "https://www.uniprot.org/uniprotkb/F1S1I8", "locus": { "chromosome": "12", "start_pos": 19323692, "end_pos": 19296513, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017372", "url": "https://www.ensembl.org/id/ENSSSCG00000017372" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017372", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017372", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00071", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00071", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06799", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06799", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12039", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12039", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512807", "url": "https://www.ncbi.nlm.nih.gov/gene/100512807", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512807", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512807", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MARNKVC", "url": "https://omabrowser.org/oma/group/MARNKVC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S1I8", "url": "https://www.orthodb.org/?gene=F1S1I8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23122", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23122", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02828", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02828", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483023", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1I8-1", "url": "https://www.uniprot.org/uniprotkb/F1S1I8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVLSEDSGLHETLALLTSQLRPDSNHKEEMGFLRDVFSEKSLSYLMKIHEKLRYYERQSPTPVLHSAVALAEDVMEELQAASVHSDERELLQLLSTPHLRAMLMVHDTVAQKNFDPVLPPLPDHIAEDFDEESVKIVRLVKNKEPLGATIRRDEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGVTVLHKRPDEISQILAQSQGSITLKIIPATQEEDRLKDSKVFMRALFHYDPREDRAIPCQEAGLPFQRRQVLEVVSQDDPTWWQAKRVGDTNLRAGLIPSKQFQERRLSYWRATGTLPSPQSLKKPPYDQPCDKETCDCEGYFKGHYVAGLRRSFRLGRRERLGSPQEGKMSSVAEPLELPTYEEVTRYQHQPGERPRLVVLIGSLGARLHELKQKVVAENPQHFGVAVPHTTRPRKSHEKEGVEYHFISKQAFEADLHHNKFLEHGEYKENLYGTSLEAIQVVMAKNKVCLVDVEPDALQHLRTSEFKPYVIFVKPAIQEKRKTPPMSPACEDAAAPLDAEQQEMAASAAFIDQHYGHWVDAVLVKEDLQTAHSQLRALLEKLSKDTHWVPISWVR", "length": 585, "header": "tr|F1S1I8-1|F1S1I8_PIG Isoform 1 of MAGUK p55 subfamily member 3 OS=Sus scrofa OX=9823 GN=MPP3 PE=3 SV=2 CANONICAL=F1S1I8-1" }, "isoforms": [ { "isoform_ac": "F1S1I8-1", "url": "https://www.uniprot.org/uniprotkb/F1S1I8/entry", "sequence": { "sequence": "MPVLSEDSGLHETLALLTSQLRPDSNHKEEMGFLRDVFSEKSLSYLMKIHEKLRYYERQSPTPVLHSAVALAEDVMEELQAASVHSDERELLQLLSTPHLRAMLMVHDTVAQKNFDPVLPPLPDHIAEDFDEESVKIVRLVKNKEPLGATIRRDEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGVTVLHKRPDEISQILAQSQGSITLKIIPATQEEDRLKDSKVFMRALFHYDPREDRAIPCQEAGLPFQRRQVLEVVSQDDPTWWQAKRVGDTNLRAGLIPSKQFQERRLSYWRATGTLPSPQSLKKPPYDQPCDKETCDCEGYFKGHYVAGLRRSFRLGRRERLGSPQEGKMSSVAEPLELPTYEEVTRYQHQPGERPRLVVLIGSLGARLHELKQKVVAENPQHFGVAVPHTTRPRKSHEKEGVEYHFISKQAFEADLHHNKFLEHGEYKENLYGTSLEAIQVVMAKNKVCLVDVEPDALQHLRTSEFKPYVIFVKPAIQEKRKTPPMSPACEDAAAPLDAEQQEMAASAAFIDQHYGHWVDAVLVKEDLQTAHSQLRALLEKLSKDTHWVPISWVR", "length": 585, "header": "tr|F1S1I8-1|F1S1I8_PIG Isoform 1 of MAGUK p55 subfamily member 3 OS=Sus scrofa OX=9823 GN=MPP3 PE=3 SV=2 CANONICAL=F1S1I8-1" }, "locus": { "chromosome": "12", "start_pos": 19322325, "end_pos": 19297817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018911.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018911.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018407.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018407.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512807", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512807", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BGZ5-1", "protein_name": "MAGUK p55 subfamily member 3", "gene_name": "MPP3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPVLSEDSGLHETLALLTSQLRPDSNHKEEMGFLRDVFSEKSLSYLMKIHEKLRYYERQSPTPVLHSAVALAEDVMEELQAASVHSDERELLQLLSTPHLRAMLMVHDTVAQKNFDPVLPPLPDNIDEDFDEESVKIVRLVKNKEPLGATIRRDEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGITVLHKRPDEISQILAQSQGSITLKIIPATQEEDRLKDSKVFMRALFHYNPREDRAIPCQEAGLPFQRRQVLEVVSQDDPTWWQAKRVGDTNLRAGLIPSKQFQERRLNYRRATGTLPSPQSLKKPPYDEPCDKESCDCEGYFKGYYVAGLRRSFRLGRRERLGSPQEGKTSAVAESPELPTYEEVTRYQHQPGERPRLVVLIGSLGARLHELKQKVVAENPQHFGVAIPHTTRPRKSHEKEGVEYHFVSKQTFEADLHHNKFLEHGEYKENLYGTSLEAIRVVMAKNKVCLVDVEPDALQQLRTSEFKPYVIFVKPAVQEKRKTPPMSPACEDAAAPLDEQQQEMAASASFIDQHYGHLVDAVLVKEDLQSAYSQLRALLERLSKDIHWVPISWVR", "length": 585 }, "evidence": [ { "id": "F1S1I8", "url": "https://omabrowser.org/oma/group/F1S1I8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O88954-1", "protein_name": "MAGUK p55 subfamily member 3", "gene_name": "Mpp3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVLSEDSGLHETLALLTSQLRPDSNHREEMGFLRDVFSEKSLGYLMKIHEKLRYYERQSPTPVLHSAMALAEDVMEELQAASVHSDERELLQLLSTPHLRAVLMVHDTVAQKNFDPVLPPLPDNIDEDFEEESVKIVRLVKNKEPLGATIRRDEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGITVLHKRPDEISQILAQSQGSITLKIIPATQEEDRFKESKVFMRALFHYDPREDRAIPCQEAGLPFQQRQVLEVVSQDDPTWWQAKRVGDTNLRAGLIPSKQFQERRLSYRRTTGTIPSPQNLRKPLYDQPCDKETCDCDGYFKGHYVAGLRRSFRLGCRERLTGSQEVKVPVGAESQVLLTYEEVARYQHQPGERSRLVVLIGSLGAHLHELKQRVVAEDPQHFGVAVPHTTRPRKSHEREGVEYHFVSKQAFEADIQHNKFLEHGEHKENLYGTSLEAIQTVMAKNKVCLVDVEPEALRHLRTPEFKPYVIFVKPAIQEKRKTPPVSPDSEDPATPLDEQQQEMAASAAFIDQHYGHLIDTVLVRQDLQSVCSQLRAVIESLSKDTYWVPISWVR", "length": 585 }, "evidence": [ { "id": "F1S1I8", "url": "https://omabrowser.org/oma/group/F1S1I8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q13368-1", "protein_name": "MAGUK p55 subfamily member 3", "gene_name": "MPP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVLSEDSGLHETLALLTSQLRPDSNHKEEMGFLRDVFSEKSLSYLMKIHEKLRYYERQSPTPVLHSAVALAEDVMEELQAASVHSDERELLQLLSTPHLRAVLMVHDTVAQKNFDPVLPPLPDNIDEDFDEESVKIVRLVKNKEPLGATIRRDEHSGAVVVARIMRGGAADRSGLVHVGDELREVNGIAVLHKRPDEISQILAQSQGSITLKIIPATQEEDRLKESKVFMRALFHYNPREDRAIPCQEAGLPFQRRQVLEVVSQDDPTWWQAKRVGDTNLRAGLIPSKGFQERRLSYRRAAGTLPSPQSLRKPPYDQPCDKETCDCEGYLKGHYVAGLRRSFRLGCRERLGGSQEGKMSSGAESPELLTYEEVARYQHQPGERPRLVVLIGSLGARLHELKQKVVAENPQHFGVAVPHTTRPRKSHEKEGVEYHFVSKQAFEADLHHNKFLEHGEYKENLYGTSLEAIQAVMAKNKVCLVDVEPEALKQLRTSEFKPYIIFVKPAIQEKRKTPPMSPACEDTAAPFDEQQQEMAASAAFIDRHYGHLVDAVLVKEDLQGAYSQLKVVLEKLSKDTHWVPVSWVR", "length": 585 }, "evidence": [ { "id": "F1S1I8", "url": "https://omabrowser.org/oma/group/F1S1I8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WFJ8-1", "protein_name": "MAGUK p55 subfamily member 3 isoform X2", "gene_name": "mpp3a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKEAMPVLSAGGGLHETLALLTSQLRPDANHKEDMVFLRDVFSERSLSCLMKIHEKLRQYEKQSPTPVLHSASTLAEDVAEELQSGPMSVEEKELLHLLTSPHLKAVLSVHDTVAQKNFDPVLPPLPDDFEDELDEESVKIVRLVKNKEPLGATIRRDESTGAVIVARIMKGGAADRSGLVHVGDELREVNGSSVMHKRPDEISQLLSQSQGSITLKIIPAIKEEDKLQENKVYMRALFDYTPLEDKATPCQEAGLPFKRGDVLQVVSQDDQTWWQAKRIGDCNLRAGLVPSKQFQERRLAYRIKMGTLQNSKSPKKAVYDQGCDKEDCDCEGYFNGQYIAGLRRSFRLSRKDRRGSSGEANVSDQNDTDFLTYEEVTRYQQRSNERPRLVVLIGSLGARINELKQKVIAENPHRYAVAVPHTTRPKKSHEKEGVEYHFVTKQAFDADAQNNKFIEYGEYKENLYGTSIEAIRSVQAKNKMCLVDVQPEALKALRTAEFKPYVIFVKPKIPESRRRRSAATSPGGGEHGRITEEDLQEMRLSAQQIDQQYGHLVDRVLIKEDTASASTELRSILERLERETFWVPISWVRP", "length": 591 }, "evidence": [ { "id": "F1S1I8", "url": "https://omabrowser.org/oma/group/F1S1I8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1S1I8", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" }, { "id": "PS50052", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate kinase-like", "eco_id": "ECO_0000259", "start_pos": 385, "end_pos": 570, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" }, { "id": "PS51022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L27", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 60, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 218, "start_aa": "Ile", "end_aa": "Thr", "glycosite_overlap": [] }, { "evidence": [ { "id": "F1S1I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1I8" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 226, "end_pos": 296, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S1J0-1", "uniprot_ac": "F1S1J0", "uniprot_id": "F1S1J0_PIG", "mass": { "chemical_mass": 41737.0, "monoisotopic_mass": 41737.0 }, "refseq": {}, "gene_names": [ { "name": "NAGS", "type": "recommended", "evidence": [ { "id": "F1S1J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ] } ], "protein_names": [ { "name": "N-acetylglutamate synthase, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1S1J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1J0/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.1", "type": "synonym", "evidence": [ { "id": "F1S1J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1J0/entry#names_and_taxonomy" } ] }, { "name": "Amino-acid acetyltransferase", "type": "synonym", "evidence": [ { "id": "F1S1J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1J0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in the regulation of ureagenesis by producing the essential cofactor N-acetylglutamate (NAG), thus modulating carbamoylphosphate synthase I (CPS1) activity.", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0#function" }, { "database": "UniProtKB", "id": "ARBA00058188", "url": "https://www.uniprot.org/uniprotkb/ARBA00058188#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NAGS", "url": "https://www.uniprot.org/uniprotkb/F1S1J0", "locus": { "chromosome": "12", "start_pos": 19169961, "end_pos": 19174747, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024179", "url": "https://www.ensembl.org/id/ENSSSCG00000024179" } ] } } ], "crossref": [ { "id": "F1S1J0", "url": "https://alphafold.ebi.ac.uk/entry/F1S1J0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024179", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024179", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04265", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04265", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FQTCYHS", "url": "https://omabrowser.org/oma/group/FQTCYHS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23342", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23342", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23342:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23342:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70635", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70635", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "24292", "url": "https://www.rhea-db.org/rhea/24292", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1J0-1", "url": "https://www.uniprot.org/uniprotkb/F1S1J0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAQRCKVLVNTLRHNAATAVPFFGGGSVLGAAEPAPHASYSGIVSVETDLLQWCLESGSIPILCPIGETAARRSVLLDSLEVTAALAKALQPTKIIFLNTTGGICDSSHKVLSNVNLPADLDLVTNAEWVSTKERQQMRLIVDVLSRLPHHSSAVITAASTLLTELFSNKGSGTLFKNAERMLRVRSLDSLDQDRLVNLVNASFGKKLRDDYLASLRPRLHSVYVSEGYNAAAILTTEPVLGGTPYLDKFVVSSSRQGQGSGQMLWERLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "length": 381, "header": "tr|F1S1J0-1|F1S1J0_PIG Isoform 1 of N-acetylglutamate synthase, mitochondrial OS=Sus scrofa OX=9823 GN=NAGS PE=3 SV=2 CANONICAL=F1S1J0-1" }, "isoforms": [ { "isoform_ac": "F1S1J0-1", "url": "https://www.uniprot.org/uniprotkb/F1S1J0/entry", "sequence": { "sequence": "MSSLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAQRCKVLVNTLRHNAATAVPFFGGGSVLGAAEPAPHASYSGIVSVETDLLQWCLESGSIPILCPIGETAARRSVLLDSLEVTAALAKALQPTKIIFLNTTGGICDSSHKVLSNVNLPADLDLVTNAEWVSTKERQQMRLIVDVLSRLPHHSSAVITAASTLLTELFSNKGSGTLFKNAERMLRVRSLDSLDQDRLVNLVNASFGKKLRDDYLASLRPRLHSVYVSEGYNAAAILTTEPVLGGTPYLDKFVVSSSRQGQGSGQMLWERLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "length": 381, "header": "tr|F1S1J0-1|F1S1J0_PIG Isoform 1 of N-acetylglutamate synthase, mitochondrial OS=Sus scrofa OX=9823 GN=NAGS PE=3 SV=2 CANONICAL=F1S1J0-1" }, "locus": { "chromosome": "12", "start_pos": 19174007, "end_pos": 19170401, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025040.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025040.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025512.2", "url": "https://www.ensembl.org/id/ENSSSCP00000025512.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-70635", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70635", "resource": "Reactome", "description": "Urea cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A904-1", "protein_name": "N-acetylglutamate synthase, mitochondrial", "gene_name": "Nags", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTCHTPNAPRSHSGPPIPPRPESDPAQLNGKLRTPSVVRSRPTVTCGWGRPVGLVVVMATAWVATALRSAAAARRLRSPGGPGGSRRLSGSARRRGARSASPGRRLSTARAHVEDNEGTKGRVQSPAVEEPPWTPLPTPLESPAPPAGKSLVQRDIQAFLNQCGASPGEARHWLTQFQTCYHSVDKPFAVVEVDEEVFGCPQAVSRLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAQSCKVLVNELRHNAATAVPFFGGGSVLSAAEPAPHASYGGIVAVETDLLQWCLESNSIPILCPIGETAARRSVLLDSLEVTASLAKALQPTKIIFLNNSGGLRDTSQKILSNVNLPADLDLVTNAEWLSTKERQQIRLIVDVLSRLPHYSSAVITAASTLLTELFSNKGCGTLFKNAERMLRVRSLDSLDQGRLVNLVNASFGKKLREDYLESLRPRLHSIYVSEGYNAAAILTVEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "length": 584 }, "evidence": [ { "id": "F1S1J0", "url": "https://omabrowser.org/oma/group/F1S1J0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BMR7-1", "protein_name": "N-acetylglutamate synthase, mitochondrial", "gene_name": "NAGS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATVRMAWALWAAPAGRRLRGPRGTGSARRLSCGARRQATRGTSPGRRLSTAWGPAQLAQEEAEGGKDDVHPSAAEEPLWTPPPAPPVPPDSPGPPAGRSLVQRDIQTFLNQCGASPGEARHWLTQFQACHHSADRPFAVIEVDEEVVKCPKAVSSLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAQRCKVLVDALRHNAAAAVPFFGGGSVLSAAEPAPHASYGGIVSVETDLLQWCLESGSIPILCPIGETAARRSVLLDSLEVTASLAKALRPTKIIFLNTTGGLHDGSHKVLSNVNLPADLDLVTNADWVSTKERQRIRLIVDVLSRLPHHSSAVITAASMLLTELFSNRGSGTLFKTCERTLRVRCLDSLDQGRLVNLVNASFGKKLRDDYLASLRPRLHSVYFSEGYNAAAILTTEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLKTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "length": 534 }, "evidence": [ { "id": "F1S1J0", "url": "https://omabrowser.org/oma/group/F1S1J0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HLI7-1", "protein_name": "N-acetylglutamate synthase, mitochondrial", "gene_name": "Nags", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATAWVATALRSAAAARRLHNPGGPGGSRRLSGSARRRGAKSASPGRRLSTARPRAEDAEGAKGRVQSPAVEEPSWTPPPTPLESPAPPAGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCYHSVDKPFAVMEVDEAVFQCPQAVSSLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAQSCKVLVDELRHNAATAVPFFGGGSVLSAAEPAPHASYGGIVSVETDLLQWCLESNSIPILCPIGETAVRRSVLLDSLEVTASLAKALQPTKIIFLNDSGGLRDTRQKILSNVNLPADLDLVTNAEWLSIKERQQIRLIVDVLSRLPHYSSAVITSASTLLTELFSNKGCGTLFKNAERMLRVSSLDSLDQGRLVNLVNTSFGRKLRDDYLESLRPRLHSIYVSEGYNAAAILTVEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "length": 527 }, "evidence": [ { "id": "F1S1J0", "url": "https://omabrowser.org/oma/group/F1S1J0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8N159-1", "protein_name": "N-acetylglutamate synthase, mitochondrial", "gene_name": "NAGS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATALMAVVLRAAAVAPRLRGRGGTGGARRLSCGARRRAARGTSPGRRLSTAWSQPQPPPEEYAGADDVSQSPVAEEPSWVPSPRPPVPHESPEPPSGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCHHSADKPFAVIEVDEEVLKCQQGVSSLAFALAFLQRMDMKPLVVLGLPAPTAPSGCLSFWEAKAQLAKSCKVLVDALRHNAAAAVPFFGGGSVLRAAEPAPHASYGGIVSVETDLLQWCLESGSIPILCPIGETAARRSVLLDSLEVTASLAKALRPTKIIFLNNTGGLRDSSHKVLSNVNLPADLDLVCNAEWVSTKERQQMRLIVDVLSRLPHHSSAVITAASTLLTELFSNKGSGTLFKNAERMLRVRSLDKLDQGRLVDLVNASFGKKLRDDYLASLRPRLHSIYVSEGYNAAAILTMEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFHKPASDPGS", "length": 534 }, "evidence": [ { "id": "F1S1J0", "url": "https://omabrowser.org/oma/group/F1S1J0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R4H7-1", "protein_name": "N-acetylglutamate synthase, mitochondrial", "gene_name": "Nags", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATAWVATALRSAAAARRLRSPGGPGGSRRLSGSARRRGAKSASPGRRLSTARAHAEDAEGAKGRVQSPAVEEPSWTPLPTPLESPAPPAGRSLVQRDIQAFLNQCGASPGEARHWLTQFQTCYHSVDKPFAVMEVDEEVIRCPQAVSRLAFALAFLQRMDMKPLVVLGLPTPTAPSGCLSFWEAKAQLAQSCKVLVDELRHNAATAVPFFGGGSVLSAAEPAPHASYGGIVAVETDLLQWCLESNSIPILCPIGETAARRSVLLDSLEVTASLAKALQPTKIIFLNNSGGLRNNSQKILSNVNLPADLDLVTNAEWLSIKERQQIRLIVDVLSRLPHYSSAVITAASTLLTELFSNKGCGTLFKNAERMLRVRNLDSLDQGRLVNLVNASFGKKLREDYLESLRPRLHSIYVSEGYNAAAILTVEPVLGGTPYLDKFVVSSSRQGQGSGQMLWECLRRDLQTLFWRSRVTNPINPWYFKHSDGSFSNKQWIFFWFGLADIRDSYELVNHAKGLPDSFCKPASDPGS", "length": 527 }, "evidence": [ { "id": "F1S1J0", "url": "https://omabrowser.org/oma/group/F1S1J0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "L-glutamate N-acetyltransferase activity", "id": "GO:0004042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004042", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "pmid": "" }, { "name": "acetylglutamate kinase activity", "id": "GO:0003991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003991", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "glutamate metabolic process", "id": "GO:0006536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006536", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "pmid": "" }, { "name": "urea cycle", "id": "GO:0000050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000050", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "pmid": "" }, { "name": "L-arginine biosynthetic process", "id": "GO:0006526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006526", "evidence": [ { "database": "UniProtKB", "id": "F1S1J0", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "24292", "name": "", "equation": "L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24292", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24292" } ] }, { "id": "R-SSC-70542", "name": "glutamate + acetyl CoA => N-acetyl glutamate + CoA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [ "R-ALL-30471" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70542", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70542" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-30471", "participant_name": "NAcGlu [mitochondrial matrix]", "crossref": [ { "id": "17533", "database": "ChEBI", "url": "" }, { "id": "C00624", "database": "COMPOUND", "url": "" }, { "id": "HMDB0001138", "database": "HMDB Metabolite", "url": "" }, { "id": "ZINC000001532704", "database": "ZINC", "url": "" }, { "id": "8144112", "database": "PubChem Substance", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S1J0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 381, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S1J0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S1J0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S1J0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1J0" }, { "id": "PS51731", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51731" }, { "id": "PS51186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 222, "end_pos": 373, "start_aa": "Glu", "end_aa": "Cys", "glycosite_overlap": [] } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 243, "end_pos": 245 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S1K2-1", "uniprot_ac": "F1S1K2", "uniprot_id": "F1S1K2_PIG", "mass": { "chemical_mass": 17430.0, "monoisotopic_mass": 17430.0 }, "refseq": { "ac": "XP_003125560", "name": "alanine and arginine-rich domain-containing protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125560" }, "gene_names": [ { "name": "AARD", "type": "recommended", "evidence": [ { "id": "F1S1K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1K2" } ] }, { "name": "AARD", "type": "synonym", "evidence": [ { "id": "XP_003125560", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125560" } ] } ], "protein_names": [ { "name": "Alanine and arginine rich domain containing protein", "type": "synonym", "evidence": [ { "id": "F1S1K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1K2/entry#names_and_taxonomy" } ] }, { "name": "alanine and arginine-rich domain-containing protein", "type": "synonym", "evidence": [ { "id": "XP_003125560", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125560" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S1K2", "url": "https://www.uniprot.org/uniprotkb/F1S1K2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AARD", "url": "https://www.uniprot.org/uniprotkb/F1S1K2", "locus": { "chromosome": "4", "start_pos": 21715819, "end_pos": 21720764, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006013", "url": "https://www.ensembl.org/id/ENSSSCG00000006013" } ] } } ], "crossref": [ { "id": "F1S1K2", "url": "https://alphafold.ebi.ac.uk/entry/F1S1K2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006013", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006013", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522252", "url": "https://www.ncbi.nlm.nih.gov/gene/100522252", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522252", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522252", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ELEMAWE", "url": "https://omabrowser.org/oma/group/ELEMAWE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S1K2", "url": "https://www.orthodb.org/?gene=F1S1K2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32289:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32289:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_003125560", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125560", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S1K2", "url": "https://www.uniprot.org/uniprotkb/F1S1K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1K2-1", "url": "https://www.uniprot.org/uniprotkb/F1S1K2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSGDSCRRREGTSRGSHGFLVGAEFWPPTLRPARVFRGGRKSVAAQEETPAASPLLEDLRRRLVRAFQRAVPRGRSRRSREAAAAREERSRARVESALAGLRAELLEMRFQNRQLARTLLDLDMKMQQLKKEYELEMASESQSSEDNDVNLE", "length": 153, "header": "tr|F1S1K2-1|F1S1K2_PIG Isoform 1 of Alanine and arginine rich domain containing protein OS=Sus scrofa OX=9823 GN=AARD PE=4 SV=1 CANONICAL=F1S1K2-1" }, "isoforms": [ { "isoform_ac": "F1S1K2-1", "url": "https://www.uniprot.org/uniprotkb/F1S1K2/entry", "sequence": { "sequence": "MDSGDSCRRREGTSRGSHGFLVGAEFWPPTLRPARVFRGGRKSVAAQEETPAASPLLEDLRRRLVRAFQRAVPRGRSRRSREAAAAREERSRARVESALAGLRAELLEMRFQNRQLARTLLDLDMKMQQLKKEYELEMASESQSSEDNDVNLE", "length": 153, "header": "tr|F1S1K2-1|F1S1K2_PIG Isoform 1 of Alanine and arginine rich domain containing protein OS=Sus scrofa OX=9823 GN=AARD PE=4 SV=1 CANONICAL=F1S1K2-1" }, "locus": { "chromosome": "4", "start_pos": 21720697, "end_pos": 21716783, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006599.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006599.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006423.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006423.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S1K2", "url": "https://www.uniprot.org/uniprotkb/F1S1K2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522252", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522252", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3MXY2-1", "protein_name": "Alanine and arginine rich domain containing protein", "gene_name": "AARD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGLEDSGRRREGPSRGPHNILHAAGLRSSTLRPSRGFLEGGRGVDGPEEAQAAGPRLDELKRRLVRAFQRAVLRGSSRRLREEAAAREAQSRARVESALAGLRAELLEMRFQNRQLARTLLDLNMKMQQLKKEDEMETALESQSSEDNAQNLE", "length": 153 }, "evidence": [ { "id": "F1S1K2", "url": "https://omabrowser.org/oma/group/F1S1K2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4LEZ3-1", "protein_name": "Alanine- and arginine-rich domain-containing protein", "gene_name": "AARD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGPGDFRRCRERISQGLQGLPGRAELWFPPRPACDFFGDGRSTDIQEEALAASPLLEDLRRRLTRAFQWAVQRAISRRVQEAAAAAAAREEQSWTGVEATLARLRAELVEMHFQNHQLARTLLDLNMKVQQLKKEYELEITSDSQSPKDDAANPE", "length": 155 }, "evidence": [ { "id": "F1S1K2", "url": "https://omabrowser.org/oma/group/F1S1K2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q811W1-1", "protein_name": "Alanine- and arginine-rich domain-containing protein", "gene_name": "Aard", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLGDYSHCRQRMSRGLYGVSGRAALWSPVFHPVHRMPCGTWRIGIEVPEHVRASSPVLEHLRRQLERAFQRAAARGRARRAREAVAAVAAAAAAAREERSRTRMECALARLRAELLELRFQNHQLARTLLDLNMKMQQLKKRQDQELASKPQSPQDKEMNSECGSA", "length": 167 }, "evidence": [ { "id": "F1S1K2", "url": "https://omabrowser.org/oma/group/F1S1K2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": 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], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S1L9", "url": "https://www.uniprot.org/uniprotkb/F1S1L9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CSTF2", "url": "https://www.uniprot.org/uniprotkb/F1S1L9", "locus": { "chromosome": "X", "start_pos": 82540863, "end_pos": 82508736, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012486", "url": "https://www.ensembl.org/id/ENSSSCG00000012486" } ] } } ], "crossref": [ { "id": "F1S1L9", "url": "https://alphafold.ebi.ac.uk/entry/F1S1L9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012486", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012486", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12671", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12671", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515986", "url": "https://www.ncbi.nlm.nih.gov/gene/100515986", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515986", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515986", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NSQSMQM", "url": "https://omabrowser.org/oma/group/NSQSMQM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S1L9", "url": "https://www.orthodb.org/?gene=F1S1L9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LE23", "url": "https://www.orthodb.org/?gene=I3LE23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "K7GS58", "url": "https://www.orthodb.org/?gene=K7GS58", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45735", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45735", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45735:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45735:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14304", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14304", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14327", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14327", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73856", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77595", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003135279", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135279", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S1L9", "url": "https://www.uniprot.org/uniprotkb/F1S1L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S1L9-1", "url": "https://www.uniprot.org/uniprotkb/F1S1L9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE23", "url": "https://www.uniprot.org/uniprotkb/I3LE23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE23-1", "url": "https://www.uniprot.org/uniprotkb/I3LE23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS58", "url": "https://www.uniprot.org/uniprotkb/K7GS58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GS58-1", "url": "https://www.uniprot.org/uniprotkb/K7GS58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGPLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRSYLGPPHQGPPMHHVPGHDSRGPPPHEMRGGPLAEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEVRGMEARSMDTRGPVPGPRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 572, "header": "tr|F1S1L9-1|F1S1L9_PIG Isoform 1 of Cleavage stimulation factor subunit 2 OS=Sus scrofa OX=9823 GN=CSTF2 PE=1 SV=3 CANONICAL=F1S1L9-1" }, "isoforms": [ { "isoform_ac": "F1S1L9-1", "url": "https://www.uniprot.org/uniprotkb/F1S1L9/entry", "sequence": { "sequence": "MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGPLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRSYLGPPHQGPPMHHVPGHDSRGPPPHEMRGGPLAEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEVRGMEARSMDTRGPVPGPRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 572, "header": "tr|F1S1L9-1|F1S1L9_PIG Isoform 1 of Cleavage stimulation factor subunit 2 OS=Sus scrofa OX=9823 GN=CSTF2 PE=1 SV=3 CANONICAL=F1S1L9-1" }, "locus": { "chromosome": "X", "start_pos": 82535114, "end_pos": 82508839, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013653.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013653.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000013281.4", "url": "https://www.ensembl.org/id/ENSSSCP00000013281.4" } ] } }, { "isoform_ac": "I3LE23-1", "url": "https://www.uniprot.org/uniprotkb/I3LE23/entry", "sequence": { "sequence": "MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQGTLQHSPVGPAGPASIERVQVPMQDPRAAMQRGPLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRSYLGPPHQGPPMHHVPGHDSRGPPPHEMRGGPLAEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEVRGMEARSMDTRGPVPGPRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 592, "header": "tr|I3LE23-1|F1S1L9_PIG Computationally mapped isoform of Cleavage stimulation factor subunit 2 OS=Sus scrofa OX=9823 GN=CSTF2 PE=1 SV=1 CANONICAL=F1S1L9-1" }, "locus": { "chromosome": "X", "start_pos": 82535114, "end_pos": 82508839, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027214.5", "url": "https://www.ensembl.org/id/ENSSSCT00000027214.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022308.1", "url": "https://www.ensembl.org/id/ENSSSCP00000022308.1" } ] } }, { "isoform_ac": "K7GS58-1", "url": "https://www.uniprot.org/uniprotkb/K7GS58/entry", "sequence": { "sequence": "MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQTVHSTGPGSGSNVSMNQQNPQAPQAQSLSGMHVNGAPPLMQASLQAGVAAPGQIPATVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEVRGMEARSMDTRGPVPGPRGPMPSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQAGGQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 466, "header": "tr|K7GS58-1|F1S1L9_PIG Computationally mapped isoform of Cleavage stimulation factor subunit 2 OS=Sus scrofa OX=9823 GN=CSTF2 PE=1 SV=2 CANONICAL=F1S1L9-1" }, "locus": { "chromosome": "X", "start_pos": 82535114, "end_pos": 82508839, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034722.4", "url": "https://www.ensembl.org/id/ENSSSCT00000034722.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030738.2", "url": "https://www.ensembl.org/id/ENSSSCP00000030738.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LE23", "url": "https://www.uniprot.org/uniprotkb/I3LE23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515986", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515986", "resource": "KEGG Pathway" }, { "id": "R-SSC-72187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "resource": "Reactome", "description": "mRNA 3'-end processing" }, { "id": "R-SSC-73856", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "resource": "Reactome", "description": "RNA Polymerase II Transcription Termination" }, { "id": "R-SSC-77595", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "resource": "Reactome", "description": "Processing of Intronless Pre-mRNAs" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4I9I2-1", "protein_name": "Cleavage stimulation 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"sequence": "MAGLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGESISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLISGNPQPVHVAGPGSGPNVSMNQQNPQAPQAQSLSGMHVNGAPPMMQASMPGGVPAPVQMAAAVAGPGPGSLAPAGVMQAQVGMQGAGPVPMERGQGTLQHSPVGPAGPASIERVQGQRTWMIWASVRGSTPSLLVSGGLDGIAVLPMQDPRAAMQRGALPANVPTPRGLLGDAPNDPRGGTLMTVTGEVEPRAYLGPPPPPHQGPPMHHVPGHEGRGPPPHDMRGGPLAEPRPLMAEPRGPMLDQRGPPLDARGGRDPRGLDARGMEARAMEARGLEARAMEARAMEARAMEARAMEARAMEARAMEARGMDTRGPVPGPRGPIPSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 624 }, "evidence": [ { "id": "F1S1L9", "url": "https://omabrowser.org/oma/group/F1S1L9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0YX48-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGLSVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPVNPEDAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTSVPPLIPGNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQPIGGMHVNGAPPLMQPPMQGGVPAPGQMAAAVQGPGPGPMAPGGGLQPQVGMPGGGPVPLERGQGTLQLSPVGPARPASIERVQVPMPDPRAPMQRGPLPASGPPPRGLLGDAPNDPRGGTLLSVTGDVEPRGYLGPPHQGAPMHHMPGHDSRGPPHEMRGGPMGEPRPLMGEPRGPLMDARVGRDPRGLEPRGLEPRGLEPRVMEARGLEPRGMEPRVLEPRVLEARAMEARVMESRGLEPRGPGPNPRGPMAGGIQGPGPLNMGASGPQGPRQVPNMAGAGMQGGGIPGAGVQGAGQPGGFSPGQSQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 593 }, "evidence": [ { "id": "F1S1L9", "url": "https://omabrowser.org/oma/group/F1S1L9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP", "length": 577 }, "evidence": [ { "id": "F1S1L9", "url": "https://omabrowser.org/oma/group/F1S1L9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BIQ5-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "Cstf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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"UniProtKB", "id": "F1S1L9", "url": "https://www.uniprot.org/uniprotkb/F1S1L9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA 3'-end processing", "id": "GO:0031124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031124", "evidence": [ { "database": "UniProtKB", "id": "F1S1L9", "url": "https://www.uniprot.org/uniprotkb/F1S1L9" } ], "pmid": "" }, { "name": "regulation of mRNA 3'-end processing", "id": "GO:0031440", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031440", "evidence": [ { "database": "UniProtKB", "id": "F1S1L9", "url": "https://www.uniprot.org/uniprotkb/F1S1L9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S1L9-F1", "pdb_chain": "global", "start_pos": 1, 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"table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S1M5-1", "uniprot_ac": "F1S1M5", "uniprot_id": "F1S1M5_PIG", "mass": { "chemical_mass": 37132.0, "monoisotopic_mass": 37132.0 }, "refseq": {}, "gene_names": [ { "name": "TNMD", "type": "recommended", "evidence": [ { "id": "F1S1M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1M5" } ] } ], "protein_names": [ { "name": "Tenomodulin", "type": "synonym", "evidence": [ { "id": "F1S1M5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S1M5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": 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